DEPDC1-AS2

Summary

DEPDC1-AS2 (DEPDC1 antisense RNA 2, HGNC:58135) is a long non-coding RNA gene on chromosome 1p31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58135
Approved symbol	DEPDC1-AS2
Name	DEPDC1 antisense RNA 2
Location	1p31.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP4-694A7.2
Ensembl gene	ENSG00000233589
Ensembl biotype	lncRNA
Entrez	138842260
RNAcentral	URS00001D8F79 — ncRNA, 960 nt, 2 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000425820

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000425820 — 2 exons

Exon	Start	End
ENSE00001658295	68479129	68479309
ENSE00001775724	68482761	68483539

Expression profiles

Bgee: expression breadth broad, 91 present calls, max score 81.95.

Top tissues by expression

91 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.95	gold quality
bone marrow cell	CL:0002092	66.77	silver quality
ventricular zone	UBERON:0003053	66.48	gold quality
lymph node	UBERON:0000029	63.67	gold quality
ganglionic eminence	UBERON:0004023	62.84	gold quality
myometrium	UBERON:0001296	59.80	gold quality
tonsil	UBERON:0002372	59.79	gold quality
duodenum	UBERON:0002114	59.29	gold quality
bone marrow	UBERON:0002371	58.23	gold quality
endometrium	UBERON:0001295	57.23	gold quality
vermiform appendix	UBERON:0001154	56.97	gold quality
urinary bladder	UBERON:0001255	56.51	gold quality
monocyte	CL:0000576	55.96	silver quality
kidney	UBERON:0002113	55.47	gold quality
placenta	UBERON:0001987	54.74	gold quality
rectum	UBERON:0001052	54.40	gold quality
esophagus mucosa	UBERON:0002469	53.83	gold quality
right adrenal gland cortex	UBERON:0035827	53.65	gold quality
lung	UBERON:0002048	53.21	gold quality
esophagus	UBERON:0001043	53.06	gold quality
prefrontal cortex	UBERON:0000451	51.81	gold quality
lower esophagus mucosa	UBERON:0035834	51.67	gold quality
stromal cell of endometrium	CL:0002255	51.41	silver quality
heart	UBERON:0000948	51.36	gold quality
liver	UBERON:0002107	50.63	silver quality
prostate gland	UBERON:0002367	50.55	gold quality
blood	UBERON:0000178	50.37	gold quality
uterine cervix	UBERON:0000002	49.67	silver quality
body of uterus	UBERON:0009853	49.63	gold quality
transverse colon	UBERON:0001157	49.48	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.