DES
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Also known as CMD1ICSM1CSM2LGMD2R
Summary
DES (desmin, HGNC:2770) is a protein-coding gene on chromosome 2q35, encoding Desmin (P17661). Muscle-specific type III intermediate filament essential for proper muscular structure and function.
This gene encodes a muscle-specific class III intermediate filament. Homopolymers of this protein form a stable intracytoplasmic filamentous network connecting myofibrils to each other and to the plasma membrane. Mutations in this gene are associated with desmin-related myopathy, a familial cardiac and skeletal myopathy (CSM), and with distal myopathies.
Source: NCBI Gene 1674 — RefSeq curated summary.
At a glance
- Gene–disease (curated): dilated cardiomyopathy 1I (Definitive, ClinGen) — +5 more curated relationships
- GWAS associations: 83
- Clinical variants (ClinVar): 1,335 total — 62 pathogenic, 42 likely-pathogenic
- Phenotypes (HPO): 61
- MANE Select transcript:
NM_001927
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2770 |
| Approved symbol | DES |
| Name | desmin |
| Location | 2q35 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CMD1I, CSM1, CSM2, LGMD2R |
| Ensembl gene | ENSG00000175084 |
| Ensembl biotype | protein_coding |
| OMIM | 125660 |
| Entrez | 1674 |
Gene structure
Transcript identifiers
Ensembl transcripts: 35 — 31 protein_coding, 4 retained_intron
ENST00000373960, ENST00000477226, ENST00000483395, ENST00000492726, ENST00000683013, ENST00000868989, ENST00000868990, ENST00000868991, ENST00000868992, ENST00000868993, ENST00000868994, ENST00000868995, ENST00000868996, ENST00000868997, ENST00000868998, ENST00000868999, ENST00000869000, ENST00000869001, ENST00000869002, ENST00000942891, ENST00000942892, ENST00000942893, ENST00000942894, ENST00000942895, ENST00000942896, ENST00000942897, ENST00000942898, ENST00000942899, ENST00000942900, ENST00000942901, ENST00000942902, ENST00000942903, ENST00000942904, ENST00000942905, ENST00000942906
RefSeq mRNA: 7 — MANE Select: NM_001927
NM_001382708, NM_001382709, NM_001382710, NM_001382711, NM_001382712, NM_001382713, NM_001927
CCDS: CCDS33383
Canonical transcript exons
ENST00000373960 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001147285 | 219420095 | 219420155 |
| ENSE00001147439 | 219425663 | 219425745 |
| ENSE00001462010 | 219425949 | 219426734 |
| ENSE00001462013 | 219418377 | 219419040 |
| ENSE00003493309 | 219420251 | 219420346 |
| ENSE00003509416 | 219420828 | 219420953 |
| ENSE00003548407 | 219420495 | 219420656 |
| ENSE00003583585 | 219421340 | 219421560 |
| ENSE00003629786 | 219423777 | 219423820 |
Expression profiles
Bgee: expression breadth ubiquitous, 280 present calls, max score 99.97.
FANTOM5 (CAGE): breadth broad, TPM avg 126.3241 / max 14066.4829, expressed in 640 samples.
FANTOM5 promoters (15 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 25449 | 121.3299 | 503 |
| 25452 | 1.2114 | 204 |
| 25472 | 0.7786 | 99 |
| 25458 | 0.4510 | 84 |
| 25473 | 0.4147 | 81 |
| 25471 | 0.3741 | 80 |
| 25459 | 0.3691 | 79 |
| 25457 | 0.2971 | 68 |
| 25453 | 0.2725 | 103 |
| 25455 | 0.2634 | 65 |
Top tissues by expression
294 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| apex of heart | UBERON:0002098 | 99.97 | gold quality |
| saphenous vein | UBERON:0007318 | 99.97 | gold quality |
| gastrocnemius | UBERON:0001388 | 99.96 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 99.96 | gold quality |
| mucosa of stomach | UBERON:0001199 | 99.95 | gold quality |
| lower esophagus | UBERON:0013473 | 99.95 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 99.95 | gold quality |
| right atrium auricular region | UBERON:0006631 | 99.94 | gold quality |
| cardiac atrium | UBERON:0002081 | 99.93 | gold quality |
| cardiac ventricle | UBERON:0002082 | 99.92 | gold quality |
| heart left ventricle | UBERON:0002084 | 99.92 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 99.91 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 99.90 | gold quality |
| diaphragm | UBERON:0001103 | 99.88 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 99.88 | gold quality |
| body of uterus | UBERON:0009853 | 99.86 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 99.85 | gold quality |
| popliteal artery | UBERON:0002250 | 99.84 | gold quality |
| tibial artery | UBERON:0007610 | 99.84 | gold quality |
| left uterine tube | UBERON:0001303 | 99.82 | gold quality |
| body of tongue | UBERON:0011876 | 99.82 | gold quality |
| gluteal muscle | UBERON:0002000 | 99.79 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 99.79 | gold quality |
| gall bladder | UBERON:0002110 | 99.77 | gold quality |
| urethra | UBERON:0000057 | 99.76 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 99.74 | gold quality |
| tibialis anterior | UBERON:0001385 | 99.74 | gold quality |
| myocardium | UBERON:0002349 | 99.72 | gold quality |
| triceps brachii | UBERON:0001509 | 99.69 | gold quality |
| vena cava | UBERON:0004087 | 99.68 | gold quality |
Single-cell (SCXA)
Detected in 11 experiment(s), a significant marker in 10.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-2 | yes | 18732.24 |
| E-MTAB-8410 | yes | 5781.13 |
| E-MTAB-10287 | yes | 3865.86 |
| E-HCAD-24 | yes | 2572.77 |
| E-HCAD-56 | yes | 1634.58 |
| E-MTAB-10662 | yes | 500.65 |
| E-HCAD-30 | yes | 281.77 |
| E-MTAB-6701 | yes | 62.58 |
| E-HCAD-1 | yes | 30.95 |
| E-MTAB-11268 | no | 1218.07 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): DLX3, FOXC2, MEF2A, MEF2C, MEF2D, MYF5, MYF6, MYOD1, MYOG, RARB, SP7, STAT2, TBP, TBXT, TP63, TRIM16
miRNA regulators (miRDB)
62 targeting DES, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-6845-3P | 99.94 | 66.88 | 1439 |
| HSA-MIR-4753-3P | 99.90 | 71.03 | 3786 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-1343-3P | 99.89 | 66.78 | 1815 |
| HSA-MIR-6783-3P | 99.89 | 67.92 | 2059 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-130B-5P | 99.83 | 68.50 | 1888 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-6817-3P | 99.79 | 68.35 | 2126 |
| HSA-MIR-3150A-3P | 99.76 | 64.44 | 1640 |
| HSA-MIR-6763-5P | 99.76 | 64.68 | 1767 |
| HSA-MIR-1976 | 99.74 | 65.48 | 1127 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-5004-5P | 99.68 | 66.63 | 1294 |
| HSA-MIR-1260A | 99.61 | 66.67 | 1098 |
| HSA-MIR-1260B | 99.61 | 66.67 | 1098 |
| HSA-MIR-1207-5P | 99.49 | 69.11 | 2983 |
| HSA-MIR-1224-5P | 99.48 | 65.59 | 803 |
| HSA-MIR-766-3P | 99.47 | 65.24 | 1811 |
| HSA-MIR-5580-5P | 99.38 | 66.96 | 1139 |
| HSA-MIR-4284 | 99.36 | 65.25 | 1293 |
Literature-anchored findings (GeneRIF, showing 40)
- structural and functional analysis of a new variant causing desmin-related myopathy (PMID:11668632)
- nebulin colocalizes with desmin in a Z-line-associated, striated pattern, thereby forming a lateral linkage system which contributes to maintain adjacent Z-lines in register as shown by immunofluorescence studies (PMID:12064939)
- N-desmin has a role as a dominant-negative inhibitor of filament assembly, both for desmin and the structurally related intermediate filament protein vimentin (PMID:12477713)
- Expression studies demonstrated inability of the N342D mutant desmin to form cellular filamentous network, confirming the pathogenic role of this mutation, but the network was not affected by the tail-domain I451M mutation. (PMID:12609507)
- desmin mutants have a role in biochemical properties of mitochondria in diseased human skeletal muscle (PMID:12620971)
- Desmin appears to increase as the force generating capacity of the muscle increases. (PMID:15468102)
- A novel heterozygous Glu245Asp (E245D) missense mutation in exon 3 of the desmin gene (DES) at 2q35 in patient of restrictive cardiomyopathy. (PMID:15759133)
- A novel desmin R355P mutation has been identified in a patient with familial cardiac and skeletal myopathy. (PMID:16009553)
- data demonstrate a time course for muscular adaptation to resistance training in which desmin increases shortly after strength gains and in conjunction with hypertrophy, but before changes in MHC isoforms, whereas dystrophin remains unchanged (PMID:16439510)
- characterization of a muscle-cell-specific LCR, which is linked to the desmin gene (PMID:16545539)
- We propose that two in-frame deletions of one and three amino acids cause subtle age-dependent structural alterations of desmin IFs that eventually lead to disease. (PMID:17188893)
- Five novel missense DES mutations including the first localized to the highly conserved 1A domain were detected in 6 subjects (1.4%)Mutations in the 1A helical domain, as well as the 2B rod domain, are capable of causing a dilated cardiomyopathy phenotype (PMID:17325244)
- Three novel disease-associated mutations in the desmin gene were identified in unrelated Spanish families affected by cardioskeletal myopathy. (PMID:17418574)
- Desmin plays a role in mechanical, structural and regulatory functions of the cardiomyocyte Disturbances in its activity is associated with worsening of heart failure. (PMID:17436150)
- Desmin mutations should be considered a relatively rare cause of dilated cardiomyopathy in the St. Petersburg area of Russia. (PMID:17626518)
- two distantly related Dutch families with autosomal dominant inheritance of desmin-related myopathy affecting 15 family members (PMID:17720647)
- perinuclear localization of the TRIM-like protein myospryn requires its binding partner desmin (PMID:17872945)
- Removal of antibodies by immunoadsorption modulates myocardial gene expression of desmin in dilated cardiomyopathy patients. (PMID:17924085)
- Desmin myopathy was identified in a Chinese man with complete heart block and mild proximal and distal limb weakness (PMID:18061454)
- demonstration that IL8, DES and ENO1 act as the central elements in colon cancer susceptibility, and protein biosynthesis and the ribosome-associated function categories largely account for the colon cancer tumuorigenesis (PMID:18691435)
- Desmin E245D mutation interferes with the ability of nebulin to precisely regulate thin filament lengths. (PMID:19005210)
- Using shotgun mass spectrometry, we found this protein differentially expressed in the dorsolateral prefrontal cortex from patients with schizophrenia. (PMID:19165527)
- immunohistochemistry, using a panel composed of desmin, smoothelin, and vimentin, may be potentially useful for staging of bladder carcinoma (PMID:19252475)
- Data showed that the elevated expression of desmin was correlated with the severity and differentiation of CRC. (PMID:19460759)
- There are distinct patterns of histone H3 and H4 acetylation and H3 methylation at the promoter and intragenic region of DES. (PMID:19473514)
- The “head” mutations in desmin proteins impacting on intermediate filament assembly properties and their competition for binding to cellular anchoring structures might explain part of the molecular mechanism that causes myhofibrillar myopathy disease. (PMID:19763525)
- A localized effect of desmin on the structure of the cardiac intercalated disks might contribute to disease pathogenesis (PMID:19879535)
- The Uruguayan family with severe cardiomyopathy carries an unusual deletion p.E114del within the 1A rod domain of desmin. (PMID:20133133)
- the “tail” domain is responsible for attractive filament-filament interactions (PMID:20171226)
- Desmin mutations affects the localization of desmoplakin and plakophilin-2 at the intercalated disk suggesting a link between desmosomal cardiomyopathies (mainly affecting the right ventricle) and cardiomyopathies caused by desmin mutations. (PMID:20423733)
- study of aggregation properties of desmin in vitro & aggregation state of desmin in homogenates of transfected cells; detected divergent assembly patterns for 3 different desmin missense mutations (PMID:20448486)
- Novel mutations of desmin gene were linked with cardiomyopathy in patients from 5 Chinese families with desminopathy. (PMID:20654101)
- Six novel mutations and one previously reported mutation in the desmin gene were identified in the patients (PMID:20696008)
- study provides evidence on functional consequences of a novel mutation, N116S, identified in the desmin 1A segment of the rod domain for the development of arrhythmogenic right ventricular cardiomyopathy (PMID:20829228)
- Case Report: present a rare case of desmin-related hypertrophic cardiomyopathy. Cardiac magnetic resonance imaging revealed fibrosis in the lateral wall of the left ventricle. (PMID:21083940)
- mutations in MTM1 disrupted the MTM1-desmin complex, resulting in abnormal intermediate filament assembly and architecture in muscle cells (PMID:21135508)
- the state of desmin-filament assembly is crucial for synemin anchorage and consequently might involve mechanical and functional stability of the cytoskeletal network (PMID:21262226)
- strong down-regulation of MCK activity contributes to F-actin instability and induces post-translational modification of alphaB-crystallin and desmin (PMID:21768101)
- these studies highlight the importance of desmin in maintaining cardiomyocyte structure and illustrate how disrupting this network can be deleterious to the heart–{REVIEW} (PMID:21784990)
- study of patients with heart dilation of various origins; conclude A213V desmin substitution represents a rare polymorphism that plays role as predisposing factor resulting in maladaptive heart remodelling in presence of other pathological factors (PMID:21842594)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | desmb | ENSDARG00000005221 |
| danio_rerio | desma | ENSDARG00000058656 |
| mus_musculus | Des | ENSMUSG00000026208 |
| rattus_norvegicus | Des | ENSRNOG00000019810 |
Paralogs (68): KRT33A (ENSG00000006059), VIM (ENSG00000026025), KRT31 (ENSG00000094796), NEFM (ENSG00000104722), KRT23 (ENSG00000108244), KRT37 (ENSG00000108417), KRT32 (ENSG00000108759), KRT18 (ENSG00000111057), LMNB1 (ENSG00000113368), KRT36 (ENSG00000126337), KRT17 (ENSG00000128422), GFAP (ENSG00000131095), KRT34 (ENSG00000131737), KRT33B (ENSG00000131738), NES (ENSG00000132688), PRPH (ENSG00000135406), KRT85 (ENSG00000135443), KRT7 (ENSG00000135480), KRT71 (ENSG00000139648), INA (ENSG00000148798), LMNTD1 (ENSG00000152936), LMNA (ENSG00000160789), KRT84 (ENSG00000161849), KRT82 (ENSG00000161850), KRT80 (ENSG00000167767), KRT1 (ENSG00000167768), KRT24 (ENSG00000167916), KRT8 (ENSG00000170421), KRT78 (ENSG00000170423), KRT86 (ENSG00000170442), KRT75 (ENSG00000170454), KRT6C (ENSG00000170465), KRT4 (ENSG00000170477), KRT74 (ENSG00000170484), KRT72 (ENSG00000170486), KRT83 (ENSG00000170523), BFSP2 (ENSG00000170819), KRT19 (ENSG00000171345), KRT15 (ENSG00000171346), KRT38 (ENSG00000171360)
Protein
Protein identifiers
Desmin — P17661 (reviewed: P17661)
All UniProt accessions (2): P17661, Q53SB5
UniProt curated annotations — full annotation on UniProt →
Function. Muscle-specific type III intermediate filament essential for proper muscular structure and function. Plays a crucial role in maintaining the structure of sarcomeres, inter-connecting the Z-disks and forming the myofibrils, linking them not only to the sarcolemmal cytoskeleton, but also to the nucleus and mitochondria, thus providing strength for the muscle fiber during activity. In adult striated muscle they form a fibrous network connecting myofibrils to each other and to the plasma membrane from the periphery of the Z-line structures. May act as a sarcomeric microtubule-anchoring protein: specifically associates with detyrosinated tubulin-alpha chains, leading to buckled microtubules and mechanical resistance to contraction. Required for nuclear membrane integrity, via anchoring at the cell tip and nuclear envelope, resulting in maintenance of microtubule-derived intracellular mechanical forces. Contributes to the transcriptional regulation of the NKX2-5 gene in cardiac progenitor cells during a short period of cardiomyogenesis and in cardiac side population stem cells in the adult. Plays a role in maintaining an optimal conformation of nebulette (NEB) on heart muscle sarcomeres to bind and recruit cardiac alpha-actin.
Subunit / interactions. Homomer. Interacts with DST. Interacts with MTM1. Interacts with EPPK1; interaction is dependent of higher-order structure of intermediate filament. Interacts with CRYAB. Interacts with NEB (via nebulin repeats 160-164). Interacts (via rod region) with NEBL (via nebulin repeats 1-5). Interacts with ASB2 isoform 1; the interaction targets DES for proteasomal degradation. Interacts with PLEC isoform 1C. Interacts with PKP1. Interacts with FLII.
Subcellular location. Cytoplasm. Myofibril. Sarcomere. Z line. Cell membrane. Sarcolemma. Nucleus. Cell tip. Nucleus envelope.
Post-translational modifications. ADP-ribosylation prevents ability to form intermediate filaments. Phosphorylation at Ser-7, Ser-28 and Ser-32 by CDK1, phosphorylation at Ser-60 by AURKB and phosphorylation at Thr-76 by ROCK1 contribute to efficient separation of desmin intermediate filaments during mitosis. Ubiquitination by a SCF-like complex containing ASB2 isoform 1 leads to proteasomal degradation.
Disease relevance. Myopathy, myofibrillar, 1 (MFM1) [MIM:601419] A form of myofibrillar myopathy, a group of chronic neuromuscular disorders characterized at ultrastructural level by disintegration of the sarcomeric Z disk and myofibrils, and replacement of the normal myofibrillar markings by small dense granules, or larger hyaline masses, or amorphous material. MFM1 is characterized by skeletal muscle weakness associated with cardiac conduction blocks, arrhythmias, restrictive heart failure, and accumulation of desmin-reactive deposits in cardiac and skeletal muscle cells. The disease is caused by variants affecting the gene represented in this entry. Mutations in the DES gene are associated with a variable clinical phenotype which encompasses isolated myopathies, pure cardiac phenotypes (including dilated cardiomyopathy, restrictive cardiomyopathy and arrhythmogenic right ventricular cardiomyopathy), cardiac conduction disease, and combinations of these disorders. If both cardiologic and neurologic features occur, they can manifest in any order, as cardiologic features can precede, occur simultaneously with, or follow manifestation of generalized neuromuscular disease. Cardiomyopathy, dilated, 1I (CMD1I) [MIM:604765] A disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death. The disease is caused by variants affecting the gene represented in this entry. Neurogenic scapuloperoneal syndrome Kaeser type (Kaeser syndrome) [MIM:181400] Autosomal dominant disorder with a peculiar scapuloperoneal distribution of weakness and atrophy. A large clinical variability is observed ranging from scapuloperoneal, limb grindle and distal phenotypes with variable cardiac or respiratory involvement. Facial weakness, dysphagia and gynaecomastia are frequent additional symptoms. Affected men seemingly bear a higher risk of sudden, cardiac death as compared to affected women. Histological and immunohistochemical examination of muscle biopsy specimens reveal a wide spectrum of findings ranging from near normal or unspecific pathology to typical, myofibrillar changes with accumulation of desmin. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the intermediate filament family.
RefSeq proteins (7): NP_001369637, NP_001369638, NP_001369639, NP_001369640, NP_001369641, NP_001369642, NP_001918* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006821 | Intermed_filament_DNA-bd | Domain |
| IPR018039 | IF_conserved | Conserved_site |
| IPR039008 | IF_rod_dom | Domain |
| IPR050405 | Intermediate_filament | Family |
Pfam: PF00038, PF04732
UniProt features (82 total): sequence variant 41, modified residue 21, region of interest 11, sequence conflict 4, mutagenesis site 2, initiator methionine 1, chain 1, domain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P17661-F1 | 77.73 | 0.56 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (21): 7, 12, 16, 17, 28, 31, 32, 37, 37, 45, 58, 60, 68, 70, 76, 77, 81, 290, 358, 361 …
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 120 | results in impaired filaments formation. |
| 120 | does not result in impaired filaments formation. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-390522 | Striated Muscle Contraction |
MSigDB gene sets: 279 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_DN, GOBP_INTERMEDIATE_FILAMENT_BASED_PROCESS, MYOGENIN_Q6, GOBP_CIRCULATORY_SYSTEM_PROCESS, GOBP_INTERMEDIATE_FILAMENT_ORGANIZATION, MODULE_255, GCANCTGNY_MYOD_Q6, OHASHI_AURKB_TARGETS, MODULE_317, MODULE_128, CAGCTG_AP4_Q5, HUMMERICH_SKIN_CANCER_PROGRESSION_DN, GNF2_MYL3, SP1_Q2_01, GOBP_MUSCLE_STRUCTURE_DEVELOPMENT
GO Biological Process (6): muscle contraction (GO:0006936), nuclear envelope organization (GO:0006998), cytoskeleton organization (GO:0007010), regulation of heart contraction (GO:0008016), intermediate filament organization (GO:0045109), skeletal muscle organ development (GO:0060538)
GO Molecular Function (4): structural constituent of cytoskeleton (GO:0005200), cytoskeletal protein binding (GO:0008092), identical protein binding (GO:0042802), protein binding (GO:0005515)
GO Cellular Component (20): nucleus (GO:0005634), nuclear envelope (GO:0005635), cytosol (GO:0005829), intermediate filament (GO:0005882), cell-cell junction (GO:0005911), fascia adherens (GO:0005916), intercalated disc (GO:0014704), Z disc (GO:0030018), neuromuscular junction (GO:0031594), sarcolemma (GO:0042383), intermediate filament cytoskeleton (GO:0045111), cell tip (GO:0051286), extracellular exosome (GO:0070062), cardiac myofibril (GO:0097512), cytoplasm (GO:0005737), cytoskeleton (GO:0005856), plasma membrane (GO:0005886), membrane (GO:0016020), contractile muscle fiber (GO:0043292), supramolecular fiber (GO:0099512)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Muscle contraction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| cytoskeleton | 2 |
| protein binding | 2 |
| cytoplasm | 2 |
| intracellular membraneless organelle | 2 |
| muscle system process | 1 |
| nucleus organization | 1 |
| endomembrane system organization | 1 |
| membrane organization | 1 |
| organelle organization | 1 |
| heart contraction | 1 |
| regulation of blood circulation | 1 |
| intermediate filament cytoskeleton organization | 1 |
| supramolecular fiber organization | 1 |
| muscle organ development | 1 |
| structural molecule activity | 1 |
| cytoskeleton organization | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| nucleus | 1 |
| endomembrane system | 1 |
| organelle envelope | 1 |
| intermediate filament cytoskeleton | 1 |
| polymeric cytoskeletal fiber | 1 |
| anchoring junction | 1 |
| cell-cell junction | 1 |
| intercalated disc | 1 |
| cell-cell contact zone | 1 |
| I band | 1 |
| synapse | 1 |
| plasma membrane | 1 |
| cell pole | 1 |
| extracellular vesicle | 1 |
| myofibril | 1 |
| intracellular anatomical structure | 1 |
| membrane | 1 |
| cell periphery | 1 |
| supramolecular fiber | 1 |
| supramolecular polymer | 1 |
Protein interactions and networks
STRING
2038 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DES | MAML1 | Q92585 | 855 |
| DES | PLEC | Q15149 | 835 |
| DES | SYNC | Q9H7C4 | 825 |
| DES | FHOD3 | Q2V2M9 | 761 |
| DES | HINT1 | P49773 | 742 |
| DES | DTNA | Q9Y4J8 | 724 |
| DES | TRIM29 | Q14134 | 711 |
| DES | FHOD1 | Q9Y613 | 695 |
| DES | DMD | P11532 | 650 |
| DES | TXNDC9 | O14530 | 643 |
| DES | DSP | P15924 | 618 |
| DES | CDH1 | P12830 | 612 |
| DES | CDC14A | Q9UNH5 | 562 |
| DES | SIRT2 | Q8IXJ6 | 558 |
| DES | FMNL3 | Q8IVF7 | 548 |
IntAct
253 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| VIM | NEFL | psi-mi:“MI:0914”(association) | 0.840 |
| NEFL | DES | psi-mi:“MI:0915”(physical association) | 0.830 |
| DES | VIM | psi-mi:“MI:0915”(physical association) | 0.820 |
| VIM | DES | psi-mi:“MI:0915”(physical association) | 0.820 |
| NEFM | NEFL | psi-mi:“MI:0914”(association) | 0.800 |
| GFAP | DES | psi-mi:“MI:0915”(physical association) | 0.780 |
| DES | PRPH | psi-mi:“MI:0915”(physical association) | 0.780 |
| DES | GFAP | psi-mi:“MI:0915”(physical association) | 0.780 |
| DES | EHHADH | psi-mi:“MI:0915”(physical association) | 0.720 |
| DES | PPP1R18 | psi-mi:“MI:0915”(physical association) | 0.720 |
| PPP1R18 | DES | psi-mi:“MI:0915”(physical association) | 0.720 |
| DES | DES | psi-mi:“MI:0915”(physical association) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| MLH1 | DES | psi-mi:“MI:0915”(physical association) | 0.600 |
| DES | MLH1 | psi-mi:“MI:0915”(physical association) | 0.600 |
BioGRID (195): DES (Two-hybrid), DES (Two-hybrid), EHHADH (Two-hybrid), UBE2I (Two-hybrid), PPP1R18 (Two-hybrid), DES (Affinity Capture-RNA), BRCA1 (Two-hybrid), DES (Two-hybrid), DES (Affinity Capture-MS), DES (Affinity Capture-MS), DES (Affinity Capture-MS), DES (Affinity Capture-MS), DES (Affinity Capture-MS), DES (Affinity Capture-MS), DES (Affinity Capture-MS)
ESM2 similar proteins: A0A125S9M4, A0A125S9M5, A0A125S9M6, A0A8C0N8E3, O62654, P02540, P02541, P02542, P02543, P02544, P02545, P08552, P08670, P09654, P10999, P11048, P14732, P16275, P17661, P20152, P21910, P22488, P23239, P23729, P24789, P24790, P31000, P31001, P31393, P35617, P48616, P48670, P48673, P48674, P48675, P48676, P48678, P48679, P84198, Q03427
Diamond homologs: A0A8C0N8E3, A5A6M8, A5A6N0, A6QQJ3, B4F721, O62654, O77788, O93532, O95678, P02538, P02540, P02541, P02542, P02543, P02544, P02547, P02548, P03995, P04259, P05786, P05787, P07196, P07197, P08551, P08552, P08553, P08670, P08729, P08776, P09654, P11679, P12035, P12036, P12839, P13647, P14136, P15331, P16053, P16878, P16884
SIGNOR signaling
13 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ROCK1 | unknown | DES | phosphorylation |
| CDK1 | “down-regulates quantity by destabilization” | DES | phosphorylation |
| MYF5 | “up-regulates quantity by expression” | DES | “transcriptional regulation” |
| MYF6 | “up-regulates quantity by expression” | DES | “transcriptional regulation” |
| MYOG | “up-regulates quantity by expression” | DES | “transcriptional regulation” |
| MEF2D | “up-regulates quantity by expression” | DES | “transcriptional regulation” |
| MYOD1 | “down-regulates quantity by repression” | DES | “transcriptional regulation” |
| AURKB | down-regulates | DES | phosphorylation |
| ROCK1 | down-regulates | DES | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 80 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| mRNA Splicing | 6 | 12.9× | 9e-04 |
| Formation of the cornified envelope | 7 | 12.1× | 6e-04 |
| Processing of Capped Intron-Containing Pre-mRNA | 6 | 9.7× | 3e-03 |
| mRNA Splicing - Major Pathway | 7 | 7.5× | 3e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| intermediate filament organization | 10 | 34.9× | 1e-10 |
| morphogenesis of an epithelium | 5 | 24.9× | 5e-04 |
| epithelial cell differentiation | 6 | 15.3× | 5e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1335 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 62 |
| Likely pathogenic | 42 |
| Uncertain significance | 686 |
| Likely benign | 360 |
| Benign | 27 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1069497 | NM_001927.4(DES):c.525_526del (p.Val176fs) | Pathogenic |
| 1073348 | NM_001927.4(DES):c.309del (p.Thr104fs) | Pathogenic |
| 1075242 | NM_001927.4(DES):c.194dup (p.Leu66fs) | Pathogenic |
| 1075297 | NM_001927.4(DES):c.452_459del (p.Val151fs) | Pathogenic |
| 1322203 | NM_001927.4(DES):c.720_722del (p.Lys241del) | Pathogenic |
| 1334101 | NM_001927.4(DES):c.700G>T (p.Glu234Ter) | Pathogenic |
| 1425778 | NM_001927.4(DES):c.599T>A (p.Leu200Ter) | Pathogenic |
| 1453500 | NM_001927.4(DES):c.112del (p.Ala38fs) | Pathogenic |
| 1453987 | NM_001927.4(DES):c.1090C>T (p.Gln364Ter) | Pathogenic |
| 1675841 | NM_001927.4(DES):c.1289-741G>A | Pathogenic |
| 16821 | NM_001927.4(DES):c.1078G>C (p.Ala360Pro) | Pathogenic |
| 16823 | NM_001927.4(DES):c.521_541del (p.Ala174_Arg180del) | Pathogenic |
| 16830 | NM_001927.4(DES):c.1166A>C (p.Gln389Pro) | Pathogenic |
| 16834 | NM_001927.4(DES):c.1325C>T (p.Thr442Ile) | Pathogenic |
| 16835 | NM_001927.4(DES):c.1049G>C (p.Arg350Pro) | Pathogenic |
| 180206 | NM_001927.4(DES):c.639+4_639+5del | Pathogenic |
| 1916236 | NM_001927.4(DES):c.343C>T (p.Leu115Phe) | Pathogenic |
| 1988221 | NM_001927.4(DES):c.1171del (p.Leu391fs) | Pathogenic |
| 2091637 | NM_001927.4(DES):c.525_526dup (p.Val176fs) | Pathogenic |
| 2132276 | NM_001927.4(DES):c.300dup (p.Phe101fs) | Pathogenic |
| 2169507 | NM_001927.4(DES):c.343C>A (p.Leu115Ile) | Pathogenic |
| 2171104 | NM_001927.4(DES):c.346_350delinsTAGT (p.Asn116_Asp117delinsTer) | Pathogenic |
| 2424322 | NC_000002.11:g.(?220283185)(220290712_?)del | Pathogenic |
| 2579220 | GRCh38/hg38 2q35(chr2:219420345-219431647)x1 | Pathogenic |
| 265817 | NM_001927.4(DES):c.493_520delinsGCGT (p.Gln165_Ala174delinsAlaSer) | Pathogenic |
| 2663344 | NM_001927.4(DES):c.757C>T (p.Gln253Ter) | Pathogenic |
| 285007 | NM_001927.4(DES):c.373A>T (p.Lys125Ter) | Pathogenic |
| 285337 | NM_001927.4(DES):c.1213del (p.Tyr405fs) | Pathogenic |
| 2882126 | NM_001927.4(DES):c.578+2T>C | Pathogenic |
| 2937905 | NM_001927.4(DES):c.249C>A (p.Tyr83Ter) | Pathogenic |
SpliceAI
1036 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:219419036:GCCAA:G | donor_gain | 1.0000 |
| 2:219419037:CCAAG:C | donor_loss | 1.0000 |
| 2:219419039:AAGT:A | donor_loss | 1.0000 |
| 2:219419040:AG:A | donor_loss | 1.0000 |
| 2:219419041:G:GG | donor_gain | 1.0000 |
| 2:219420079:T:TA | acceptor_gain | 1.0000 |
| 2:219420083:T:TA | acceptor_gain | 1.0000 |
| 2:219420089:A:AG | acceptor_gain | 1.0000 |
| 2:219420093:A:AG | acceptor_gain | 1.0000 |
| 2:219420093:AG:A | acceptor_gain | 1.0000 |
| 2:219420094:G:GT | acceptor_gain | 1.0000 |
| 2:219420094:GG:G | acceptor_gain | 1.0000 |
| 2:219420094:GGCT:G | acceptor_gain | 1.0000 |
| 2:219420151:GAGCG:G | donor_gain | 1.0000 |
| 2:219420152:AGCG:A | donor_gain | 1.0000 |
| 2:219420152:AGCGG:A | donor_loss | 1.0000 |
| 2:219420153:GCG:G | donor_gain | 1.0000 |
| 2:219420153:GCGG:G | donor_gain | 1.0000 |
| 2:219420154:CG:C | donor_gain | 1.0000 |
| 2:219420155:GG:G | donor_gain | 1.0000 |
| 2:219420156:G:C | donor_loss | 1.0000 |
| 2:219420156:G:GG | donor_gain | 1.0000 |
| 2:219420157:T:A | donor_loss | 1.0000 |
| 2:219420238:T:A | acceptor_gain | 1.0000 |
| 2:219420239:G:A | acceptor_gain | 1.0000 |
| 2:219420249:A:AG | acceptor_gain | 1.0000 |
| 2:219420249:AG:A | acceptor_gain | 1.0000 |
| 2:219420249:AGGAC:A | acceptor_gain | 1.0000 |
| 2:219420250:G:GT | acceptor_gain | 1.0000 |
| 2:219420250:GG:G | acceptor_gain | 1.0000 |
AlphaMissense
3055 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:219418797:T:C | L112P | 1.000 |
| 2:219418806:T:C | L115P | 1.000 |
| 2:219418815:G:C | R118P | 1.000 |
| 2:219418818:T:C | F119S | 1.000 |
| 2:219420263:G:C | A218P | 1.000 |
| 2:219420285:T:C | L225P | 1.000 |
| 2:219420323:T:C | F238L | 1.000 |
| 2:219420325:C:A | F238L | 1.000 |
| 2:219420325:C:G | F238L | 1.000 |
| 2:219420580:T:A | L274H | 1.000 |
| 2:219420580:T:C | L274P | 1.000 |
| 2:219420633:G:C | A292P | 1.000 |
| 2:219420838:T:C | L303P | 1.000 |
| 2:219421350:T:C | L345P | 1.000 |
| 2:219421470:T:C | L385P | 1.000 |
| 2:219421488:T:C | L391P | 1.000 |
| 2:219421491:T:C | L392P | 1.000 |
| 2:219421499:A:G | K395E | 1.000 |
| 2:219421501:G:C | K395N | 1.000 |
| 2:219421501:G:T | K395N | 1.000 |
| 2:219421505:G:C | A397P | 1.000 |
| 2:219421509:T:A | L398Q | 1.000 |
| 2:219421509:T:C | L398P | 1.000 |
| 2:219421517:G:A | E401K | 1.000 |
| 2:219421518:A:G | E401G | 1.000 |
| 2:219421518:A:T | E401V | 1.000 |
| 2:219421519:G:C | E401D | 1.000 |
| 2:219421519:G:T | E401D | 1.000 |
| 2:219421521:T:A | I402N | 1.000 |
| 2:219421521:T:C | I402T | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000577982 (2:219419308 T>A), RS1001596075 (2:219421071 A>G), RS1002162616 (2:219419554 C>G,T), RS1002215204 (2:219426764 C>T), RS1002831932 (2:219422740 A>G), RS1003167763 (2:219423079 T>G), RS1003658106 (2:219424661 T>C), RS1004969813 (2:219417829 C>T), RS1005001062 (2:219417610 G>A,C), RS1005101907 (2:219424891 G>A), RS1005542355 (2:219424280 G>A), RS1005587037 (2:219424489 G>A), RS1005654641 (2:219417595 G>A), RS1006008380 (2:219418905 C>T), RS1006665509 (2:219425575 C>A,T)
Disease associations
OMIM: gene MIM:125660 | disease phenotypes: MIM:601419, MIM:615325, MIM:181400, MIM:604765, MIM:113900, MIM:115200, MIM:192600, MIM:613426, MIM:609040, MIM:142340
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| myofibrillar myopathy 1 | Definitive | Semidominant |
| dilated cardiomyopathy 1I | Definitive | Autosomal dominant |
| atrioventricular block | Strong | Autosomal dominant |
| arrhythmogenic right ventricular cardiomyopathy | Strong | Autosomal dominant |
| familial isolated dilated cardiomyopathy | Supportive | Autosomal dominant |
| neurogenic scapuloperoneal syndrome, Kaeser type | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| dilated cardiomyopathy 1I | Definitive | AD |
| arrhythmogenic right ventricular cardiomyopathy | Moderate | AD |
Mondo (20): myofibrillar myopathy 1 (MONDO:0011076), neurogenic scapuloperoneal syndrome, Kaeser type (MONDO:0008407), dilated cardiomyopathy 1I (MONDO:0011482), cardiomyopathy (MONDO:0004994), progressive familial heart block (MONDO:0019490), arrhythmogenic right ventricular cardiomyopathy (MONDO:0016587), limb-girdle muscular dystrophy (MONDO:0016971), dilated cardiomyopathy (MONDO:0005021), familial dilated cardiomyopathy (MONDO:0016333), neuromuscular disease (MONDO:0019056), dilated cardiomyopathy 1A (MONDO:0007269), familial hypertrophic cardiomyopathy (MONDO:0024573), dilated cardiomyopathy 1S (MONDO:0013262), arrhythmogenic right ventricular dysplasia 9 (MONDO:0012180), congenital diaphragmatic hernia (MONDO:0005711)
Orphanet (18): Autosomal recessive limb-girdle muscular dystrophy type 2R (Orphanet:363543), Desminopathy (Orphanet:98909), Familial isolated dilated cardiomyopathy (Orphanet:154), Neurogenic scapuloperoneal syndrome, Kaeser type (Orphanet:85146), Rare cardiomyopathy (Orphanet:167848), Hereditary progressive cardiac conduction defect (Orphanet:871), Inherited arrhythmogenic cardiomyopathy (Orphanet:247), Limb-girdle muscular dystrophy (Orphanet:263), Dilated cardiomyopathy (Orphanet:217604), Familial dilated cardiomyopathy (Orphanet:217607), Neuromuscular disease (Orphanet:68381), Familial dilated cardiomyopathy with conduction defect due to LMNA mutation (Orphanet:300751), Rare familial disorder with hypertrophic cardiomyopathy (Orphanet:99739), Left ventricular noncompaction (Orphanet:54260), Congenital diaphragmatic hernia (Orphanet:2140)
HPO phenotypes
61 total (30 of 61 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000467 | Neck muscle weakness |
| HP:0000771 | Gynecomastia |
| HP:0000969 | Edema |
| HP:0001283 | Bulbar palsy |
| HP:0001288 | Gait disturbance |
| HP:0001635 | Congestive heart failure |
| HP:0001639 | Hypertrophic cardiomyopathy |
| HP:0001640 | Cardiomegaly |
| HP:0001644 | Dilated cardiomyopathy |
| HP:0001645 | Sudden cardiac death |
| HP:0001662 | Bradycardia |
| HP:0001678 | Atrioventricular block |
| HP:0001709 | Third degree atrioventricular block |
| HP:0001723 | Restrictive cardiomyopathy |
| HP:0001727 | Thromboembolic stroke |
| HP:0001762 | Talipes equinovarus |
| HP:0002014 | Diarrhea |
| HP:0002015 | Dysphagia |
| HP:0002019 | Constipation |
| HP:0002460 | Distal muscle weakness |
| HP:0002505 | Loss of ambulation |
| HP:0002522 | Areflexia of lower limbs |
| HP:0002600 | Hyporeflexia of lower limbs |
| HP:0002747 | Respiratory insufficiency due to muscle weakness |
| HP:0002875 | Exertional dyspnea |
| HP:0003198 | Myopathy |
| HP:0003236 | Elevated circulating creatine kinase concentration |
GWAS associations
83 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003818_86 | Resting heart rate | 1.000000e-20 |
| GCST010796_1000 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-20 |
| GCST010796_1050 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-10 |
| GCST010796_1051 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-13 |
| GCST010796_1052 | Electrocardiogram morphology (amplitude at temporal datapoints) | 6.000000e-13 |
| GCST010796_1053 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-10 |
| GCST010796_1054 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-10 |
| GCST010796_1055 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-09 |
| GCST010796_1056 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-08 |
| GCST010796_1057 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-09 |
| GCST010796_1058 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-13 |
| GCST010796_1059 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-14 |
| GCST010796_1060 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-13 |
| GCST010796_1061 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-14 |
| GCST010796_1062 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-14 |
| GCST010796_1063 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-13 |
| GCST010796_1064 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-11 |
| GCST010796_1065 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-12 |
| GCST010796_1066 | Electrocardiogram morphology (amplitude at temporal datapoints) | 6.000000e-16 |
| GCST010796_1067 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-17 |
| GCST010796_1068 | Electrocardiogram morphology (amplitude at temporal datapoints) | 7.000000e-19 |
| GCST010796_1069 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-19 |
| GCST010796_1070 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-17 |
| GCST010796_1071 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-17 |
| GCST010796_1072 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-17 |
| GCST010796_1073 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-16 |
| GCST010796_1075 | Electrocardiogram morphology (amplitude at temporal datapoints) | 7.000000e-21 |
| GCST010796_1126 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-08 |
| GCST010796_1127 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-08 |
| GCST010796_1128 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-08 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004327 | electrocardiography |
MeSH disease descriptors (16)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D019571 | Arrhythmogenic Right Ventricular Dysplasia | C14.240.400.145; C14.280.238.028; C14.280.400.145; C16.131.240.400.145 |
| D054537 | Atrioventricular Block | C14.280.067.558.230; C14.280.123.500.230; C23.550.073.425.062 |
| D009202 | Cardiomyopathies | C14.280.238 |
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
| D002312 | Cardiomyopathy, Hypertrophic | C14.280.238.100; C14.280.484.048.750.070.160 |
| D024741 | Cardiomyopathy, Hypertrophic, Familial | C14.280.238.100.500; C14.280.484.048.750.070.160.500; C16.320.160 |
| D065630 | Hernias, Diaphragmatic, Congenital | C16.131.433; C23.300.707.960.500.116 |
| D008531 | Megacolon | C06.405.469.158.701 |
| D049288 | Muscular Dystrophies, Limb-Girdle | C05.651.534.500.280; C10.668.491.175.500.149; C16.320.577.280 |
| D009468 | Neuromuscular Diseases | C10.668 |
| C563808 | Arrhythmogenic Right Ventricular Dysplasia, Familial, 9 (supp.) | |
| C565752 | Cardiomyopathy, Dilated, 1i (supp.) | |
| C563538 | Cardiomyopathy, Dilated, 1s (supp.) | |
| C580316 | Myofibrillar Myopathy (supp.) | |
| C566695 | Scapuloperoneal Syndrome, Neurogenic, Kaeser Type (supp.) | |
| C536231 | familial dilated cardiomyopathy (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Doxorubicin | decreases expression | 3 |
| Tretinoin | affects expression, decreases expression, increases expression | 3 |
| bisphenol A | affects expression, decreases expression | 2 |
| Benzo(a)pyrene | decreases methylation, increases expression | 2 |
| Estradiol | affects cotreatment, increases expression, decreases expression | 2 |
| Nickel | decreases expression | 2 |
| Progesterone | affects cotreatment, decreases expression | 2 |
| bufotalin | decreases expression | 1 |
| propargylglycine | decreases reaction, decreases expression | 1 |
| trimellitic anhydride | decreases expression | 1 |
| sulforaphane | affects binding | 1 |
| sodium arsenite | increases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| triphenyltin | decreases expression | 1 |
| boric acid | affects expression | 1 |
| diallyl trisulfide | affects cotreatment, decreases expression, decreases reaction | 1 |
| tributyltinisothiocyanate | decreases expression | 1 |
| 2,7-dihydroxynaphthalene | decreases expression | 1 |
| clothianidin | increases expression | 1 |
| incobotulinumtoxinA | decreases expression | 1 |
| Celecoxib | increases expression, affects reaction | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Artesunate | decreases reaction, decreases expression | 1 |
| Azacitidine | increases expression, affects cotreatment | 1 |
| Bleomycin | decreases expression | 1 |
| Cadmium | increases expression | 1 |
| Cuprizone | increases expression | 1 |
| Deferoxamine | decreases expression, decreases reaction, increases expression | 1 |
| Bucladesine | affects cotreatment, increases expression | 1 |
Cellosaurus cell lines
14 cell lines: 14 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_C9DY | INSRMi012-A | Induced pluripotent stem cell | Male |
| CVCL_C9DZ | INSRMi012-B | Induced pluripotent stem cell | Male |
| CVCL_C9E0 | INSRMi012-C | Induced pluripotent stem cell | Male |
| CVCL_C9E1 | INSRMi013-A | Induced pluripotent stem cell | Male |
| CVCL_C9E2 | INSRMi013-B | Induced pluripotent stem cell | Male |
| CVCL_C9E3 | INSRMi013-C | Induced pluripotent stem cell | Male |
| CVCL_D0LM | SHETi004-A | Induced pluripotent stem cell | Female |
| CVCL_D6P3 | INSRMi019-A | Induced pluripotent stem cell | Male |
| CVCL_D6P4 | INSRMi020-A | Induced pluripotent stem cell | Male |
| CVCL_D6P5 | INSRMi021-A | Induced pluripotent stem cell | Female |
Clinical trials (associated diseases)
404 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00292383 | PHASE4 | UNKNOWN | Ventricular Pacing Site Selection (V-PASS) |
| NCT00559143 | PHASE4 | WITHDRAWN | Biventricular Alternative Pacing |
| NCT01019213 | PHASE4 | COMPLETED | Acute and Chronic Effect of His-pacing in Consecutive Patients With AV-block |
| NCT01717469 | PHASE4 | UNKNOWN | Safety and the Effects of Isolated Left Ventricular Pacing in Patients With Bradyarrhythmias |
| NCT00348530 | PHASE4 | UNKNOWN | Carvedilol Versus Verapamil in Chronic Heart Failure Secondary to Non-Ischemic Cardiomyopathy |
| NCT00371891 | PHASE4 | COMPLETED | Ontario Multidetector Computed Tomographic (MDCT) Coronary Angiography Study (OMCAS) |
| NCT00401856 | PHASE4 | COMPLETED | CMR to Assess Fibrosis in Cardiomyopathy Using Eplerenone |
| NCT00559338 | PHASE4 | COMPLETED | Impact of Nesiritide Infusion for Decompensated Heart Failure in the Emergency Department |
| NCT00606775 | PHASE4 | UNKNOWN | The Preventive Efficacy of Carvedilol on Cardiac Dysfunction in Duchenne Muscular Dystrophy |
| NCT00658203 | PHASE4 | COMPLETED | Clinical Evaluation on Advanced Resynchronization |
| NCT00701220 | PHASE4 | COMPLETED | Statin Therapy for Ischemic and Nonischemic Cardiomyopathy |
| NCT00800761 | PHASE4 | COMPLETED | Intensive Combined Chelation Therapy for Iron-Induced Cardiac Disease in Patients With Thalassemia Major |
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| NCT01006473 | PHASE4 | COMPLETED | Exercise Training in Chagas Cardiomyopathy |
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| NCT01345188 | PHASE4 | COMPLETED | Ranolazine in Ischemic Cardiomyopathy |
| NCT01868841 | PHASE4 | COMPLETED | 123-I mIBG (AdreView) Heart-to-Mediastinal (H/M) Ratio and SPECT Imaging on a Small Field of View-High Efficiency Cardiac SPECT System |
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| NCT05034432 | PHASE4 | RECRUITING | The PIVATAL Study -Study of Ventricular Arrhythmia (VTA) Ablation in Left Ventricular Assist Device (LVAD) Patients |
| NCT05718128 | PHASE4 | RECRUITING | Clinical Study of Endocardial Myocardial Biopsy |
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| NCT00925691 | PHASE3 | COMPLETED | Comparison of SEPTal and Apical Pacing Sites in PerManent Right Ventricular Pacing |
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| NCT00321295 | PHASE3 | COMPLETED | Biventricular Pacing In Patients With Left Ventricular Dysfunction After Cardiovascular Surgery |
| NCT00483197 | PHASE3 | UNKNOWN | VentrAssistTM LVAD as a Bridge to Cardiac Transplantation - Pivotal Trial |
| NCT00490321 | PHASE3 | UNKNOWN | VentrAssistTM LVAD for the Treatment of Advanced Heart Failure - Destination Therapy |
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| NCT01013714 | PHASE3 | UNKNOWN | Cardiac Sympathetic Denervation for Prevention of Ventricular Tachyarrhythmias |
| NCT01217827 | PHASE3 | COMPLETED | Implantable Cardioverter-Defibrillator Use in the VA System |
| NCT01648634 | PHASE3 | COMPLETED | Nebivolol for the Prevention of Left Ventricular Systolic Dysfunction in Patients With Duchenne Muscular Dystrophy |
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| NCT03860935 | PHASE3 | COMPLETED | Efficacy and Safety of AG10 in Subjects With Transthyretin Amyloid Cardiomyopathy |
| NCT04166331 | PHASE3 | COMPLETED | Adjunctive DobutAmine in sePtic Cardiomyopathy With Tissue Hypoperfusion |
| NCT05175066 | PHASE3 | COMPLETED | Bisoprolol Administration to Prevent Anthracycline-induced Cardiotoxicity |
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Related Atlas pages
- Associated diseases: myofibrillar myopathy 1, dilated cardiomyopathy 1I, atrioventricular block, familial isolated dilated cardiomyopathy, neurogenic scapuloperoneal syndrome, Kaeser type, arrhythmogenic right ventricular cardiomyopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): arrhythmogenic right ventricular cardiomyopathy, arrhythmogenic right ventricular dysplasia 9, atrioventricular block, cardiomyopathy, congenital diaphragmatic hernia, dilated cardiomyopathy 1A, dilated cardiomyopathy 1I, dilated cardiomyopathy 1S, familial dilated cardiomyopathy, familial hypertrophic cardiomyopathy, limb-girdle muscular dystrophy, megacolon, myofibrillar myopathy, myofibrillar myopathy 1, neurogenic scapuloperoneal syndrome, Kaeser type, neuromuscular disease, progressive familial heart block