DHCR7
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Summary
DHCR7 (7-dehydrocholesterol reductase, HGNC:2860) is a protein-coding gene on chromosome 11q13.4, encoding 7-dehydrocholesterol reductase (Q9UBM7). Oxidoreductase that catalyzes the last step of the cholesterol synthesis pathway, which transforms cholesta-5,7-dien-3beta-ol (7-dehydrocholesterol,7-DHC) into cholesterol by reducing the C7-C8 double bond of its sterol core.
This gene encodes an enzyme that removes the C(7-8) double bond in the B ring of sterols and catalyzes the conversion of 7-dehydrocholesterol to cholesterol. This gene is ubiquitously expressed and its transmembrane protein localizes to the endoplasmic reticulum membrane and nuclear outer membrane. Mutations in this gene cause Smith-Lemli-Opitz syndrome (SLOS); a syndrome that is metabolically characterized by reduced serum cholesterol levels and elevated serum 7-dehydrocholesterol levels and phenotypically characterized by cognitive disability, facial dysmorphism, syndactyly of second and third toes, and holoprosencephaly in severe cases to minimal physical abnormalities and near-normal intelligence in mild cases. Alternative splicing results in multiple transcript variants that encode the same protein.
Source: NCBI Gene 1717 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Smith-Lemli-Opitz syndrome (Definitive, ClinGen)
- GWAS associations: 7
- Clinical variants (ClinVar): 1,171 total — 67 pathogenic, 154 likely-pathogenic
- Phenotypes (HPO): 181
- Druggable target: yes — 2 molecules with ChEMBL bioactivity
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_001360
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2860 |
| Approved symbol | DHCR7 |
| Name | 7-dehydrocholesterol reductase |
| Location | 11q13.4 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000172893 |
| Ensembl biotype | protein_coding |
| OMIM | 602858 |
| Entrez | 1717 |
Gene structure
Transcript identifiers
Ensembl transcripts: 35 — 32 protein_coding, 3 retained_intron
ENST00000355527, ENST00000407721, ENST00000525137, ENST00000525346, ENST00000526780, ENST00000527316, ENST00000527452, ENST00000529990, ENST00000531364, ENST00000533800, ENST00000534701, ENST00000534795, ENST00000682708, ENST00000682880, ENST00000683287, ENST00000683714, ENST00000683874, ENST00000684396, ENST00000685320, ENST00000690257, ENST00000864862, ENST00000864863, ENST00000864864, ENST00000864865, ENST00000864866, ENST00000938772, ENST00000938773, ENST00000938774, ENST00000938775, ENST00000938776, ENST00000956190, ENST00000956191, ENST00000956192, ENST00000956193, ENST00000956194
RefSeq mRNA: 16 — MANE Select: NM_001360
NM_001163817, NM_001360, NM_001425107, NM_001425108, NM_001425109, NM_001425110, NM_001425111, NM_001425112, NM_001425113, NM_001425114, NM_001425116, NM_001425117, NM_001425118, NM_001425119, NM_001425120, NM_001425121
CCDS: CCDS8200
Canonical transcript exons
ENST00000355527 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000000018 | 71434411 | 71435839 |
| ENSE00001199559 | 71437812 | 71437943 |
| ENSE00001199564 | 71438879 | 71439083 |
| ENSE00001199569 | 71441227 | 71441440 |
| ENSE00001199577 | 71442263 | 71442353 |
| ENSE00001199590 | 71447610 | 71447734 |
| ENSE00001417804 | 71448290 | 71448393 |
| ENSE00003507353 | 71444855 | 71444958 |
| ENSE00003785127 | 71443993 | 71444215 |
Expression profiles
Bgee: expression breadth ubiquitous, 257 present calls, max score 98.32.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 37.3553 / max 240.1779, expressed in 1787 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 121113 | 36.7796 | 1785 |
| 121114 | 0.5757 | 335 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| adrenal tissue | UBERON:0018303 | 98.32 | gold quality |
| right lobe of liver | UBERON:0001114 | 96.24 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 95.71 | gold quality |
| oocyte | CL:0000023 | 95.64 | gold quality |
| right adrenal gland | UBERON:0001233 | 95.64 | gold quality |
| islet of Langerhans | UBERON:0000006 | 95.39 | gold quality |
| adrenal cortex | UBERON:0001235 | 95.15 | gold quality |
| adrenal gland | UBERON:0002369 | 95.10 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 94.96 | gold quality |
| left adrenal gland | UBERON:0001234 | 94.87 | gold quality |
| secondary oocyte | CL:0000655 | 94.79 | gold quality |
| skin of leg | UBERON:0001511 | 94.70 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 94.13 | gold quality |
| liver | UBERON:0002107 | 94.06 | gold quality |
| skin of abdomen | UBERON:0001416 | 94.01 | gold quality |
| zone of skin | UBERON:0000014 | 93.12 | gold quality |
| endometrium epithelium | UBERON:0004811 | 93.08 | gold quality |
| spinal cord | UBERON:0002240 | 92.97 | gold quality |
| corpus epididymis | UBERON:0004359 | 92.74 | gold quality |
| ventricular zone | UBERON:0003053 | 92.65 | gold quality |
| left ovary | UBERON:0002119 | 92.64 | gold quality |
| ganglionic eminence | UBERON:0004023 | 92.53 | gold quality |
| upper leg skin | UBERON:0004262 | 92.04 | gold quality |
| upper arm skin | UBERON:0004263 | 91.58 | gold quality |
| embryo | UBERON:0000922 | 91.57 | gold quality |
| right ovary | UBERON:0002118 | 91.25 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 90.85 | gold quality |
| esophagus mucosa | UBERON:0002469 | 90.34 | gold quality |
| prefrontal cortex | UBERON:0000451 | 90.28 | gold quality |
| hypothalamus | UBERON:0001898 | 90.09 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6142 | no | 1249.83 |
| E-MTAB-7008 | no | 980.15 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): RUNX2, SP1, SREBF1, ZNF274
miRNA regulators (miRDB)
31 targeting DHCR7, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-5193 | 100.00 | 67.26 | 1744 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-10401-5P | 99.99 | 65.79 | 948 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-6835-3P | 99.93 | 70.49 | 2904 |
| HSA-MIR-4271 | 99.88 | 68.32 | 2244 |
| HSA-MIR-605-3P | 99.88 | 69.22 | 1833 |
| HSA-MIR-623 | 99.76 | 68.16 | 1170 |
| HSA-MIR-4802-3P | 99.72 | 70.13 | 1273 |
| HSA-MIR-6126 | 99.62 | 68.09 | 996 |
| HSA-MIR-451B | 99.55 | 68.28 | 1380 |
| HSA-MIR-5683 | 99.36 | 68.59 | 2083 |
| HSA-MIR-4758-3P | 99.12 | 63.96 | 869 |
| HSA-MIR-3135B | 98.61 | 65.33 | 1470 |
| HSA-MIR-4780 | 98.57 | 64.75 | 611 |
| HSA-MIR-4290 | 98.51 | 65.17 | 907 |
| HSA-MIR-3944-5P | 98.50 | 67.55 | 997 |
| HSA-MIR-6804-5P | 98.39 | 65.77 | 1084 |
| HSA-MIR-211-3P | 98.14 | 66.77 | 1052 |
| HSA-MIR-6867-3P | 98.12 | 66.07 | 1305 |
| HSA-MIR-6757-5P | 98.08 | 65.50 | 724 |
| HSA-MIR-6730-5P | 98.03 | 68.12 | 1299 |
| HSA-MIR-5681A | 97.99 | 67.17 | 1658 |
| HSA-MIR-9851-5P | 97.57 | 67.49 | 1067 |
| HSA-MIR-2467-5P | 97.36 | 67.71 | 991 |
| HSA-MIR-3194-5P | 96.80 | 64.90 | 1027 |
| HSA-MIR-4680-5P | 96.43 | 67.15 | 893 |
| HSA-MIR-4296 | 96.35 | 63.55 | 1233 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- This protein catalyses the last step of endogenous cholesterol synthesis. SLOS is caused by a biochemical enzymatic defect. (PMID:11767235)
- identified a new mutation in DHCR7 (PMID:11857552)
- Mutation analysis demonstrated a novel mutation in the DHCR7 gene, present in homozygous form in the two affected individuals available for testing, and heterozygous in the parents. (PMID:12116246)
- SLOS is a recessive gene disorder. A fetus was found to have renal agenesis. (PMID:12833423)
- Our identification of a single haplotype associated with the T93M mutation in patients whose ancestors originate in the region of the Mediterranean Sea basin suggests a founder effect. (PMID:14981719)
- DHCR7 mutations have a role in the Smith-Lemli-Opitz syndrome (PMID:15776424)
- identification of nine novel missense mutations of the DHCR7 gene (PMID:15954111)
- Mutational analysis of the DHCR7 gene led to the identification of seven distinct mutations, three of which are new (F174S, H301R, and Q98X) for Smith-Lemli-Opitz syndrome. (PMID:15979035)
- In Polish individuals with SLOS two DHCR7 mutations, c.452G>A (p.Trp151X) and c.976G>T (p.Val326Leu), account for 65.2% of all observed DHCR7 mutations. (PMID:16497572)
- DHCR7 mutation is a rapid and reliable method for prenatal diagnosis of Smith-Lemli-Opitz syndrome. (PMID:17441222)
- DHCR7 gene mutations is associated with Smith-Lemli-Opitz syndrome. (PMID:17595012)
- it appears that a combination of founder effects, recurrent mutations, and drift have shaped the present frequency distribution of DHCR7 mutations in Europe (PMID:17965227)
- The study identified compound heterozygous mutations ([p.Arg352Trp] + [p.Lys376ArgfsX37]) in a Korean girl with clinical and laboratory features typical of Smith-Lemli-Opitz syndrome. (PMID:18006960)
- DHCR7 mutation is associated with Smith-Lemli-Opitz syndrome (PMID:18249054)
- The p.G366V is a novel mutation of the DHCR7 gene with guanine by thymine nucleotide exchange resulting in glycin by valin amino acid exchange in the dehydrocholesterol reductase enzyme. (PMID:19365639)
- study determined the mutational spectrum of DHCR7 gene in 17 Slovak Smith-Lemli-Opitz syndrome patients; 6 different mutations were identified: nonsense mutation W151X and missense mutations V326L, L109P, G410S, R352Q, Y432C (PMID:19390132)
- LBR mutant variants and sterol reductases can severely interfere with the regular organization of the nuclear envelope and the endoplasmic reticulum. (PMID:19940018)
- Mutations of the 7-dehydrocholesterol reductase gene is associated with Smith-Lemli-Opitz syndrome. (PMID:20635399)
- Study confirms that variation in DHCR7 is associated with predisposition to autoimmune disease type 1 diabetes. (PMID:21441443)
- Two previously reported N287K (861 C>A) and R352Q (1055 G>A) and a novel R352L (1055 G>T) mutations were identified in the DHCR7 gene in these patients. (PMID:21696385)
- GC and NADSYN1/DHCR7 loci individually and collectively contribute to variation in plasma vitamin D levels in Chinese Hans. (PMID:21972121)
- ANKRD55 and DHCR7 are novel multiple sclerosis risk loci. (PMID:22130326)
- This study demonistrated that the accumulation of an immediate cholesterol precursor, 7-DHC and its oxysterol metabolite, 3beta,5alpha-dihydroxycholest-7-en-6-one (DHCEO)in DHCR7 knockout mice. (PMID:22182693)
- The p.Thr93Met is the most frequent mutation in Turkish SLOS patients showing that there might be a founder in East Mediterranean regions (PMID:22211794)
- several SNPs related to calcium metabolism are associated with height, in particular rs3829251 at the DHCR7/NADSYN1 gene. (PMID:22390397)
- Our study is the first to confirm the association of variants in DHCR7 and CYP2R1 with 25(OH)-vitamin D levels in patients with chronic liver diseases. Results also showed an association between DHCR7 and liver stiffness. (PMID:22576297)
- we found that the two variant genotypes of DHCR7/NADSYN1 (rs3829251, rs12785878) were both associated with serum 25-hydroxyvitamin D levels. (PMID:22801813)
- Studies suggest DHCR7 mutation for the diagnosis of Smith-Lemli-Opitz Syndrome. (PMID:23321614)
- Genetic variation in DHCR7 associated with lower serum 25(OH)D has a decreased risk of aggressive prostate cancer. (PMID:23377224)
- Data indicate that SNPs in the DHCR7/NADSYN1 locus showed evidence of positive association with rheumatoid arthritis (RA). (PMID:23636220)
- In patients with genotype 1 chronic hepatitis C, GG homozygosis for DHCR7 gene and lower 25-hydroxyvitamin D levels are independently associated with the severity of liver fibrosis. (PMID:23730842)
- Data indicate that the same nucleotide polymorphisms (SNPs) genotypes of CYP2R1, GC and DHCR7 that are associated with reduced 25(OH)D3 serum levels were found to be associated with hepatitis C virus (HCV)-related hepatocellular carcinoma (HCC). (PMID:23734184)
- This study provides evidence that the DHCR7 gene is involved in the susceptibility to ocular Behcet disease. (PMID:24184224)
- NADSYN1/DHCR7 locus (rs12785878 and rs1790349) polymorphisms have an effect on plasma 25-hydroxyvitamin D levels and coronary artery disease incidence (PMID:24642724)
- rs3829251 (DHCR7) influenced progression of subclinical atherosclerosis in a manner dependent on type 2 diabetes status but independent of 25(OH)D levels. The SNP modulates DHCR7 mRNA levels in aortic adventitia. (PMID:24663808)
- In this mendelian randomisation study, we generated an allele score (25[OH]D synthesis score) based on variants of genes that affect 25(OH)D synthesis or substrate availability (CYP2R1 and DHCR7) (PMID:24974252)
- This study shows that Smith-Lemli-Opitz Syndrome patients who are heterozygous/homozygous for one pathogenic mutation and only one parent carrying that mutation are candidates for DHCR7 gene (partial) deletions. (PMID:25040602)
- physical and functional interaction between DHCR24 and DHCR7 (PMID:25637936)
- Allelic variations in CYP2R1 and GC affect vitamin D levels, but variant alleles on VDR and DHCR7 were not correlated with vitamin D deficiency. (PMID:26038244)
- Polymorphisms in CYP2R1-rs10766197 and DHCR7/NADSYN1-rs12785878 are associated with vitamin D deficiency in Uygur and Kazak ethnic populations (PMID:26149120)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | dhcr7 | ENSDARG00000103226 |
| mus_musculus | Dhcr7 | ENSMUSG00000058454 |
| rattus_norvegicus | Dhcr7 | ENSRNOG00000020776 |
| drosophila_melanogaster | LBR | FBGN0034657 |
| caenorhabditis_elegans | WBGENE00007126 |
Paralogs (2): LBR (ENSG00000143815), TM7SF2 (ENSG00000149809)
Protein
Protein identifiers
7-dehydrocholesterol reductase — Q9UBM7 (reviewed: Q9UBM7)
Alternative names: Cholesterol-5,6-epoxide hydrolase subunit DHCR7, Delta7-sterol reductase, Sterol Delta(7)-reductase, Sterol reductase SR-2
All UniProt accessions (17): A0A024R5F7, A0A804HI25, A0A804HJI8, A0A804HJQ7, A0A804HL56, A0A8I5KRR9, B4E1K5, E9PIP9, E9PJ54, E9PLZ2, E9PM00, E9PQ71, E9PRL8, Q9UBM7, H0YCS7, H0YE57, H0YEJ5
UniProt curated annotations — full annotation on UniProt →
Function. Oxidoreductase that catalyzes the last step of the cholesterol synthesis pathway, which transforms cholesta-5,7-dien-3beta-ol (7-dehydrocholesterol,7-DHC) into cholesterol by reducing the C7-C8 double bond of its sterol core. Can also metabolize cholesta-5,7,24-trien-3beta-ol (7-dehydrodemosterol, 7-DHD) to desmosterol, which is then metabolized by the Delta(24)-sterol reductase (DHCR24) to cholesterol. Modulates ferroptosis (a form of regulated cell death driven by iron-dependent lipid peroxidation) through the metabolic breakdown of the anti-ferroptotic metabolites 7-DHC and 7-DHD which, when accumulated, divert the propagation of peroxyl radical-mediated damage from phospholipid components to its sterol core, protecting plasma and mitochondrial membranes from phospholipid autoxidation. Component of the microsomal antiestrogen binding site (AEBS), a multiproteic complex at the ER membrane that consists of an association between cholestenol Delta-isomerase/EBP and DHCR7. This complex is responsible for cholesterol-5,6-epoxide hydrolase (ChEH) activity, which consists in the hydration of cholesterol-5,6-epoxides (5,6-EC) into cholestane-3beta,5alpha,6beta-triol (CT). The precise role of each component of this complex has not been described yet.
Subunit / interactions. Interacts with DHCR24; this interaction regulates DHCR7 activity. Interacts with TMEM147.
Subcellular location. Endoplasmic reticulum membrane.
Tissue specificity. Widely expressed. Most abundant in adrenal gland, liver, testis, and brain.
Disease relevance. Smith-Lemli-Opitz syndrome (SLOS) [MIM:270400] An autosomal recessive frequent inborn disorder of sterol metabolism with characteristic congenital malformations and intellectual disability. Children with SLOS have elevated serum 7-dehydrocholesterol (7-DHC) levels and low serum cholesterol levels. SLOS occurs in relatively high frequency: approximately 1 in 20,000 to 30,000 births in populations of northern and central European background. Historically, a clinical distinction often was made between classic (’type I’) SLOS and the more severely affected (’type II’) patients. There is, in reality, a clinical and biochemical continuum from mild to severe SLOS. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. 7-DHC reductase and cholesterol-5,6-epoxide hydrolase (ChEH) activities are inhibited by tamoxifen and the selective AEBS ligand (4-benzyl-phenoxy)-ethyl-N-pyrrolidine (PBPE). ChEH activity is inhibited by oleic acid.
Pathway. Steroid biosynthesis; cholesterol biosynthesis.
Similarity. Belongs to the ERG4/ERG24 family.
RefSeq proteins (16): NP_001157289, NP_001351, NP_001412036, NP_001412037, NP_001412038, NP_001412039, NP_001412040, NP_001412041, NP_001412042, NP_001412043, NP_001412045, NP_001412046, NP_001412047, NP_001412048, NP_001412049, NP_001412050 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001171 | ERG24_DHCR-like | Family |
| IPR018083 | Sterol_reductase_CS | Conserved_site |
Pfam: PF01222
Enzyme classification (BRENDA):
- EC 1.3.1.21 — 7-dehydrocholesterol reductase (BRENDA: 12 organisms, 52 substrates, 97 inhibitors, 3 Km, 0 kcat entries)
Substrate kinetics (BRENDA)
3 substrates with measured Km, best-characterized 3. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| 7-DEHYDROCHOLESTEROL | 1.14 | 1 |
| ERGOSTEROL | 0.21 | 1 |
| NADPH | 0.28 | 1 |
Catalyzed reactions (Rhea), 4 shown:
- 5,6alpha-epoxy-5alpha-cholestan-3beta-ol + H2O = 5alpha-cholestane-3beta,5,6beta-triol (RHEA:11964)
- 5,6beta-epoxy-5beta-cholestan-3beta-ol + H2O = 5alpha-cholestane-3beta,5,6beta-triol (RHEA:15113)
- cholesterol + NADP(+) = 7-dehydrocholesterol + NADPH + H(+) (RHEA:23984)
- 7-dehydrodesmosterol + NADPH + H(+) = desmosterol + NADP(+) (RHEA:46740)
UniProt features (79 total): sequence variant 56, binding site 8, transmembrane region 7, mutagenesis site 4, chain 1, modified residue 1, sequence conflict 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UBM7-F1 | 91.64 | 0.85 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (8): 362; 395; 400; 407–408; 447; 451–455; 462; 358
Post-translational modifications (1): 14
Mutagenesis-validated functional residues (4):
| Position | Phenotype |
|---|---|
| 24 | no effect on 7-dehydrocholesterol reductase activity. |
| 274 | loss of 7-dehydrocholesterol reductase activity. |
| 306 | loss of 7-dehydrocholesterol reductase activity. |
| 317 | no effect on 7-dehydrocholesterol reductase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-2426168 | Activation of gene expression by SREBF (SREBP) |
| R-HSA-6807047 | Cholesterol biosynthesis via desmosterol (Bloch pathway) |
| R-HSA-9969901 | Cholesterol biosynthesis from zymosterol (modified Kandutsch-Russell pathway) |
| R-HSA-6807062 | Zymostenol biosynthesis via lathosterol (Kandutsch-Russell pathway) |
MSigDB gene sets: 647 (showing top):
GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_THE_CH_CH_GROUP_OF_DONORS, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, chr11q13, SENESE_HDAC1_AND_HDAC2_TARGETS_DN, GOBP_SMALL_MOLECULE_BIOSYNTHETIC_PROCESS, UEDA_PERIFERAL_CLOCK, RUTELLA_RESPONSE_TO_CSF2RB_AND_IL4_UP, RUTELLA_RESPONSE_TO_HGF_VS_CSF2RB_AND_IL4_DN, RANKIN_ANGIOGENIC_TARGETS_OF_VHL_HIF2A_UP, GOBP_STEROID_BIOSYNTHETIC_PROCESS, JEON_SMAD6_TARGETS_DN, GOBP_LIPID_METABOLIC_PROCESS, GOBP_LIPID_BIOSYNTHETIC_PROCESS, TIEN_INTESTINE_PROBIOTICS_24HR_UP, SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP
GO Biological Process (9): cholesterol biosynthetic process (GO:0006695), obsolete cholesterol biosynthetic process via desmosterol (GO:0033489), obsolete cholesterol biosynthetic process via lathosterol (GO:0033490), positive regulation of ferroptosis (GO:0160020), lipid metabolic process (GO:0006629), steroid biosynthetic process (GO:0006694), steroid metabolic process (GO:0008202), cholesterol metabolic process (GO:0008203), sterol biosynthetic process (GO:0016126)
GO Molecular Function (7): cholesterol-5,6-oxide hydrolase activity (GO:0033963), 7-dehydrocholesterol reductase activity (GO:0047598), NADP binding (GO:0050661), protein binding (GO:0005515), oxidoreductase activity (GO:0016491), oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor (GO:0016628), hydrolase activity (GO:0016787)
GO Cellular Component (4): nuclear outer membrane (GO:0005640), endoplasmic reticulum (GO:0005783), endoplasmic reticulum membrane (GO:0005789), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Cholesterol biosynthesis | 3 |
| Regulation of cholesterol biosynthesis by SREBP (SREBF) | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| sterol metabolic process | 2 |
| catalytic activity | 2 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 2 |
| cholesterol metabolic process | 1 |
| sterol biosynthetic process | 1 |
| secondary alcohol biosynthetic process | 1 |
| positive regulation of programmed cell death | 1 |
| ferroptosis | 1 |
| regulation of ferroptosis | 1 |
| primary metabolic process | 1 |
| steroid metabolic process | 1 |
| lipid biosynthetic process | 1 |
| lipid metabolic process | 1 |
| secondary alcohol metabolic process | 1 |
| steroid biosynthetic process | 1 |
| ether hydrolase activity | 1 |
| oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 1 |
| adenyl nucleotide binding | 1 |
| binding | 1 |
| oxidoreductase activity, acting on the CH-CH group of donors | 1 |
| nuclear membrane | 1 |
| organelle outer membrane | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| organelle membrane | 1 |
| endoplasmic reticulum subcompartment | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1974 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DHCR7 | EBP | Q15125 | 940 |
| DHCR7 | FDFT1 | P37268 | 906 |
| DHCR7 | DHCR24 | Q15392 | 906 |
| DHCR7 | CYP2R1 | Q6VVX0 | 886 |
| DHCR7 | HMGCS1 | Q01581 | 880 |
| DHCR7 | HMGCR | P04035 | 851 |
| DHCR7 | NSDHL | Q15738 | 841 |
| DHCR7 | SC5D | O75845 | 830 |
| DHCR7 | SQLE | Q14534 | 829 |
| DHCR7 | NADSYN1 | Q6IA69 | 818 |
| DHCR7 | CYP51A1 | Q16850 | 799 |
| DHCR7 | CYP24A1 | Q07973 | 783 |
| DHCR7 | PAG1 | Q9NWQ8 | 769 |
| DHCR7 | IDI1 | Q13907 | 769 |
| DHCR7 | MSMO1 | Q15800 | 763 |
IntAct
116 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| ERBB2 | NDUFA4 | psi-mi:“MI:0914”(association) | 0.530 |
| NRAS | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.480 |
| DHCR7 | DHCR24 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GPC1 | SNAP23 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GPC1 | GANAB | psi-mi:“MI:0915”(physical association) | 0.400 |
| SDC1 | ILVBL | psi-mi:“MI:0915”(physical association) | 0.400 |
| Cep152 | SH3PXD2B | psi-mi:“MI:0914”(association) | 0.350 |
| Bmpr1a | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| Hspa14 | TDG | psi-mi:“MI:0914”(association) | 0.350 |
| Atp2a2 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| Smn1 | CLNS1A | psi-mi:“MI:0914”(association) | 0.350 |
| LTN1 | KIF2A | psi-mi:“MI:0914”(association) | 0.350 |
| psi-mi:“MI:0914”(association) | 0.350 | ||
| M | PGRMC1 | psi-mi:“MI:0914”(association) | 0.350 |
| M | NPEPPSL1 | psi-mi:“MI:0914”(association) | 0.350 |
| M2 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| PB1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| PLEKHA7 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| RRP1B | ZNF785 | psi-mi:“MI:0914”(association) | 0.350 |
| ISG15 | SURF4 | psi-mi:“MI:0914”(association) | 0.350 |
| TSPO | psi-mi:“MI:0914”(association) | 0.350 | |
| Prdm16 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| PRKCB | HNRNPDL | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (255): DHCR7 (Affinity Capture-MS), DHCR7 (Proximity Label-MS), DHCR7 (Proximity Label-MS), DHCR7 (Affinity Capture-MS), DHCR7 (Affinity Capture-MS), DHCR7 (Affinity Capture-MS), DHCR7 (Affinity Capture-MS), DHCR7 (Affinity Capture-MS), DHCR7 (Affinity Capture-MS), DHCR7 (Affinity Capture-MS), DHCR7 (Affinity Capture-MS), DHCR7 (Affinity Capture-MS), DHCR7 (Affinity Capture-MS), DHCR7 (Affinity Capture-MS), DHCR7 (Affinity Capture-MS)
ESM2 similar proteins: A0A077K9K6, A0A1V0QSF1, A1JHN0, A2Z1F5, A8J0J0, B2WAQ3, B8AIW3, E3Q717, O14735, O64886, O82568, O88455, P32378, P70500, Q0D576, Q0DAK7, Q0WUA3, Q10153, Q10252, Q16QL3, Q1ACB3, Q298G6, Q2N2K1, Q2N2K2, Q2N2K3, Q2N2K4, Q499N4, Q5E9J5, Q5N808, Q66JT7, Q69PA8, Q6C0L2, Q6ETL8, Q75F43, Q7XB13, Q7XB14, Q7XR51, Q7YRU6, Q8N2U9, Q8VDP6
Diamond homologs: A0A1D8PIC7, G4SW86, I1RF79, I1RR90, I1RZZ3, O08984, O13597, O76062, O88455, P23913, P25340, P32462, P36209, P38670, P78575, Q01447, Q09195, Q14739, Q3U9G9, Q4WJ59, Q4WJJ9, Q4WKA5, Q4WW43, Q54PP1, Q5E9J5, Q5R7H4, Q5UQI4, Q6P4M0, Q71KT5, Q7SXF1, Q7ZXH1, Q8WMV1, Q9LDR4, Q9LDU6, Q9UBM7, Q9Z2Z8, A0A1D8PJ25, Q8MLV1
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| DHCR7 | “down-regulates quantity” | cholesta-5,7-dien-3beta-ol | “chemical modification” |
| DHCR7 | “up-regulates quantity” | cholesterol | “chemical modification” |
| DHCR24 | “up-regulates activity” | DHCR7 | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 134 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Signaling by SCF-KIT | 5 | 13.8× | 1e-03 |
| RAF/MAP kinase cascade | 7 | 4.8× | 9e-03 |
| Membrane Trafficking | 9 | 3.7× | 1e-02 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1171 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 67 |
| Likely pathogenic | 154 |
| Uncertain significance | 324 |
| Likely benign | 370 |
| Benign | 36 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1073442 | NC_000011.9:g.(?71146411)(71146895_?)del | Pathogenic |
| 1076651 | NM_001360.3(DHCR7):c.1295A>G (p.Tyr432Cys) | Pathogenic |
| 1361572 | NM_001360.3(DHCR7):c.949del (p.Leu317fs) | Pathogenic |
| 1383040 | NM_001360.3(DHCR7):c.969_970del (p.Tyr324fs) | Pathogenic |
| 1392687 | NM_001360.3(DHCR7):c.1360A>T (p.Lys454Ter) | Pathogenic |
| 1414460 | NM_001360.3(DHCR7):c.644_659del (p.Asn214_Phe215insTer) | Pathogenic |
| 1441328 | NC_000011.9:g.(?71146411)(71156008_?)del | Pathogenic |
| 1455236 | NM_001360.3(DHCR7):c.1220A>G (p.Asn407Ser) | Pathogenic |
| 1457935 | NM_001360.3(DHCR7):c.925G>A (p.Gly309Ser) | Pathogenic |
| 1738885 | NM_001360.3(DHCR7):c.422del (p.Asn141fs) | Pathogenic |
| 188723 | NM_001360.3(DHCR7):c.292C>T (p.Gln98Ter) | Pathogenic |
| 188923 | NM_001360.3(DHCR7):c.461C>T (p.Thr154Met) | Pathogenic |
| 1999612 | NM_001360.3(DHCR7):c.1404C>G (p.Tyr468Ter) | Pathogenic |
| 2030429 | NM_001360.3(DHCR7):c.474G>A (p.Trp158Ter) | Pathogenic |
| 2034234 | NM_001360.3(DHCR7):c.546G>T (p.Trp182Cys) | Pathogenic |
| 2108087 | NM_001360.3(DHCR7):c.1012del (p.Val338fs) | Pathogenic |
| 21272 | NM_001360.3(DHCR7):c.1228G>A (p.Gly410Ser) | Pathogenic |
| 2135337 | NM_001360.3(DHCR7):c.1113G>A (p.Trp371Ter) | Pathogenic |
| 2137192 | NM_001360.3(DHCR7):c.720_735del (p.Asn240fs) | Pathogenic |
| 2424132 | NC_000011.9:g.(?71148848)(71148999_?)del | Pathogenic |
| 2424133 | NC_000011.9:g.(?71146674)(71155299_?)del | Pathogenic |
| 2424134 | NC_000011.9:g.(?71152249)(71153318_?)del | Pathogenic |
| 2705375 | NM_001360.3(DHCR7):c.1031del (p.Gly344fs) | Pathogenic |
| 2707266 | NM_001360.3(DHCR7):c.248C>A (p.Ser83Ter) | Pathogenic |
| 2709156 | NM_001360.3(DHCR7):c.266del (p.Thr89fs) | Pathogenic |
| 2712742 | NM_001360.3(DHCR7):c.322-1_334del | Pathogenic |
| 2734739 | NM_001360.3(DHCR7):c.877A>T (p.Lys293Ter) | Pathogenic |
| 2735694 | NM_001360.3(DHCR7):c.986C>T (p.Pro329Leu) | Pathogenic |
| 2751498 | NM_001360.3(DHCR7):c.543GTG[1] (p.Trp182del) | Pathogenic |
| 2752700 | NM_001360.3(DHCR7):c.1210del (p.Arg404fs) | Pathogenic |
SpliceAI
1512 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:71435838:CC:C | acceptor_gain | 1.0000 |
| 11:71435839:CC:C | acceptor_gain | 1.0000 |
| 11:71437862:A:AC | donor_gain | 1.0000 |
| 11:71437863:C:CG | donor_gain | 1.0000 |
| 11:71437864:C:CT | donor_gain | 1.0000 |
| 11:71437940:TGGC:T | acceptor_gain | 1.0000 |
| 11:71437941:GGCC:G | acceptor_loss | 1.0000 |
| 11:71437942:GCCT:G | acceptor_loss | 1.0000 |
| 11:71437943:CCT:C | acceptor_loss | 1.0000 |
| 11:71437944:C:CC | acceptor_gain | 1.0000 |
| 11:71437945:T:A | acceptor_loss | 1.0000 |
| 11:71439047:CATCA:C | acceptor_gain | 1.0000 |
| 11:71439050:CA:C | acceptor_gain | 1.0000 |
| 11:71439051:A:C | acceptor_gain | 1.0000 |
| 11:71439057:T:C | acceptor_gain | 1.0000 |
| 11:71439057:T:TC | acceptor_gain | 1.0000 |
| 11:71439085:T:C | acceptor_gain | 1.0000 |
| 11:71439085:T:TC | acceptor_gain | 1.0000 |
| 11:71441226:CCAGT:C | donor_gain | 1.0000 |
| 11:71441353:C:CT | acceptor_gain | 1.0000 |
| 11:71443988:CTGAC:C | donor_loss | 1.0000 |
| 11:71443989:TGA:T | donor_loss | 1.0000 |
| 11:71443990:GAC:G | donor_loss | 1.0000 |
| 11:71443991:A:AG | donor_loss | 1.0000 |
| 11:71443992:CC:C | donor_loss | 1.0000 |
| 11:71444031:T:A | donor_loss | 1.0000 |
| 11:71444031:T:TA | donor_gain | 1.0000 |
| 11:71444211:CCTCC:C | acceptor_gain | 1.0000 |
| 11:71444212:CTCC:C | acceptor_gain | 1.0000 |
| 11:71444212:CTCCC:C | acceptor_gain | 1.0000 |
AlphaMissense
3104 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:71437853:A:G | W308R | 1.000 |
| 11:71437853:A:T | W308R | 1.000 |
| 11:71438968:A:G | W248R | 1.000 |
| 11:71438968:A:T | W248R | 1.000 |
| 11:71437838:A:G | W313R | 0.999 |
| 11:71437838:A:T | W313R | 0.999 |
| 11:71437849:C:T | G309D | 0.999 |
| 11:71437851:C:A | W308C | 0.999 |
| 11:71437851:C:G | W308C | 0.999 |
| 11:71437865:A:G | W304R | 0.999 |
| 11:71437865:A:T | W304R | 0.999 |
| 11:71437867:C:T | G303E | 0.999 |
| 11:71437912:T:A | E288V | 0.999 |
| 11:71438980:C:A | G244W | 0.999 |
| 11:71439002:C:A | K236N | 0.999 |
| 11:71439002:C:G | K236N | 0.999 |
| 11:71439046:C:G | G222R | 0.999 |
| 11:71435558:G:C | S415R | 0.998 |
| 11:71435558:G:T | S415R | 0.998 |
| 11:71435560:T:G | S415R | 0.998 |
| 11:71435750:G:C | F351L | 0.998 |
| 11:71435750:G:T | F351L | 0.998 |
| 11:71435752:A:G | F351L | 0.998 |
| 11:71437834:A:G | L314P | 0.998 |
| 11:71437840:A:T | V312D | 0.998 |
| 11:71437850:C:G | G309R | 0.998 |
| 11:71437867:C:A | G303V | 0.998 |
| 11:71437868:C:A | G303W | 0.998 |
| 11:71437868:C:G | G303R | 0.998 |
| 11:71437868:C:T | G303R | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000060515 (11:71434175 G>A), RS1000368645 (11:71449391 C>A), RS1000390692 (11:71448998 G>C,T), RS1000484768 (11:71449138 C>T), RS1000865049 (11:71445225 C>T), RS1001081765 (11:71439935 G>T), RS1001099838 (11:71443997 A>C,G,T), RS1001238766 (11:71434336 C>T), RS1001301126 (11:71437896 C>T), RS1001325672 (11:71437644 C>T), RS1001450142 (11:71438765 G>C,T), RS1001455528 (11:71443072 C>T), RS1001581515 (11:71448266 C>T), RS1001881948 (11:71442734 G>A), RS1001915200 (11:71446999 C>T)
Disease associations
OMIM: gene MIM:602858 | disease phenotypes: MIM:270400
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Smith-Lemli-Opitz syndrome | Definitive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Smith-Lemli-Opitz syndrome | Definitive | AR |
Mondo (4): Smith-Lemli-Opitz syndrome (MONDO:0010035), hepatoblastoma (MONDO:0018666), microcephaly (MONDO:0001149), intellectual disability (MONDO:0001071)
Orphanet (3): Smith-Lemli-Opitz syndrome (Orphanet:818), Hepatoblastoma (Orphanet:449), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
181 total (30 of 181 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000003 | Multicystic kidney dysplasia |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000028 | Cryptorchidism |
| HP:0000046 | Small scrotum |
| HP:0000047 | Hypospadias |
| HP:0000048 | Bifid scrotum |
| HP:0000054 | Micropenis |
| HP:0000062 | Ambiguous genitalia |
| HP:0000074 | Ureteropelvic junction obstruction |
| HP:0000081 | Duplicated collecting system |
| HP:0000089 | Renal hypoplasia |
| HP:0000104 | Renal agenesis |
| HP:0000107 | Renal cyst |
| HP:0000122 | Unilateral renal agenesis |
| HP:0000126 | Hydronephrosis |
| HP:0000154 | Wide mouth |
| HP:0000171 | Microglossia |
| HP:0000175 | Cleft palate |
| HP:0000187 | Broad alveolar ridges |
| HP:0000193 | Bifid uvula |
| HP:0000212 | Gingival overgrowth |
| HP:0000238 | Hydrocephalus |
| HP:0000252 | Microcephaly |
| HP:0000286 | Epicanthus |
| HP:0000308 | Microretrognathia |
| HP:0000316 | Hypertelorism |
| HP:0000341 | Narrow forehead |
| HP:0000343 | Long philtrum |
| HP:0000347 | Micrognathia |
| HP:0000358 | Posteriorly rotated ears |
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000664_2 | Vitamin D levels | 3.000000e-09 |
| GCST000697_1 | Vitamin D insufficiency | 2.000000e-27 |
| GCST003155_13 | Systemic lupus erythematosus | 1.000000e-20 |
| GCST005366_2 | Vitamin D levels (dietary vitamin D intake interaction) | 2.000000e-31 |
| GCST005367_4 | Vitamin D levels | 4.000000e-62 |
| GCST005782_5 | Serum 25-Hydroxyvitamin D levels | 5.000000e-16 |
| GCST011940_3 | Bullous pemphigoid | 4.000000e-29 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0003762 | vitamin D deficiency |
| EFO:0008539 | vitamin D dietary intake measurement |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D018197 | Hepatoblastoma | C04.557.435.380 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
| D019082 | Smith-Lemli-Opitz Syndrome | C16.131.077.860; C16.320.565.398.850; C16.320.565.925.875; C18.452.584.500.937; C18.452.584.563.850; C18.452.648.398.850; C18.452.648.925.875 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL2169735 (SINGLE PROTEIN), CHEMBL612409 (PROTEIN COMPLEX)
Molecules with ChEMBL bioactivity
2 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 485,917 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL53463 | DOXORUBICIN | 4 | 314,282 |
| CHEMBL83 | TAMOXIFEN | 4 | 171,635 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
181 measured of 181 human assays (181 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| 4-((1R,3r,5S,6r)-6-(1-iso- propyl-3-(3-(trifluorometh- yl)phenyl)-1H-pyrazol-5- yl)bicyclo[3.1.0]hexan-3-yl)- morpholine | KI | 6.87 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| (S)-4-((1R,3r,5S,6S)-6-(1- isopropyl-3-(2-(trifluoro- methyl)pyrimidin-4-yl)-1H- pyrazol-5-yl)bicyclo[3.1.0] hexan-3-yl)-3-methylmor- pholine | KI | 7.22 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3r,5S,6r)-6-(3-(2- fluorophenyl)-1-isopropyl- 1H-pyrazol-5-yl)bicyclo [3.1.0]hexan-3-yl)-1,4- oxazepane | KI | 7.29 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3r,5S,6r)-6-(1-iso- propyl-3-(4-(trifluorometh- yl)phenyl)-1H-5-yl)bicyclo [3.1.0]hexan-3-yl)morpholine | KI | 7.81 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 3-(5-((1R,3r,5S,6r)-3-(1,4- oxazepan-4-yl)bicyclo[3.1.0] hexan-6-yl)-1-isopropyl-1H- pyrazol-3-yl)benzonitrile | KI | 8.04 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3r,5S,6r)-6-(3-(3- (difluoromethoxy)phenyl)-1- isopropyl-1H-pyrazol-5-yl)- bicyclo[3.1.0]hexan-3-yl)- 1,4-oxazepane | KI | 8.2 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1S,3R)-3-(1-isopropyl-3- (6-(trifluoromethyl)pyridin- 3-yl)-1H-1,2,4-triazol-5-yl)- cyclopentyl)-1,4-oxazepane | KI | 8.28 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3r,5S,6r)-6-(1-iso- propyl-3-(3-(trifluorometh- yl)phenyl)-1H-pyrazol-5-yl)- bicyclo[3.1.0]hexan-3-yl)- 1,4-oxazepane | KI | 8.64 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| (R)-4-((1R,3r,5S,6S)-6-(1- isopropyl-3-(3-(trifluoro- methyl)phenyl)-1H-1,2,4- triazol-5-yl)bicyclo[3.1.0] hexan-3-yl)-3-methylmor- pholine | KI | 8.76 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1S,3R)-3-(1-isopropyl-3- (6-(trifluoromethyl)pyridin-3- yl)-1H-1,2,4-triazol-5-yl)- cyclopentyl)morpholine | KI | 8.89 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3S)-3-(1-isopropyl-3- (3-(trifluoromethyl)phenyl)- 1H-1,2,4-triazol-5-yl)cyclo- pentyl)morpholine | KI | 8.9 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3r,5S,6r)-6-(1-iso- propyl-3-(3-(trifluorometh- oxy)phenyl)-1H-pyrazol-5- yl)bicyclo[3.1.0]hexan-3-yl)- 1,4-oxazepane | KI | 9.14 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3s,5S,6r)-6-(1-iso- propyl-3-(3-(trifluorometh- oxy)phenyl)-1H-pyrazol-5- yl)bicyclo[3.1.0]hexan-3-yl)- 1,4-oxazepane | KI | 9.63 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1S,3R)-3-(3-(3-fluoro-4- (trifluoromethyl)phenyl)-1- isopropyl-1H-1,2,4-triazol-5- yl)cyclopentyl)morpholine | KI | 9.73 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3r,5S,6r)-6-(1-iso- propyl-3-(o-tolyl)-1H- pyrazol-5-yl)bicyclo[3.1.0] hexan-3-yl)-1,4-oxazepane | KI | 9.87 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3r,5S,6r)-6-(1-iso- propyl-3-(3-(trifluorometh- yl)phenyl)-1H-1,2,4-triazol- 5-yl)bicyclo[3.1.0]hexan-3- yl)morpholine | KI | 9.93 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3r,5S,6r)-6-(1-iso- propyl-3-(4-(trifluorometh- yl)phenyl)-1H-pyrazol-5-yl)- bicyclo[3.1.0]hexan-3-yl)- 1,4-oxazepane | KI | 10.1 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3r,5S,6r)-6-(1-ethyl- 3-(5-(trifluoromethyl)pyr- idin-3-yl)-1H-pyrazol-5-yl)- bicyclo[3.1.0]hexan-3-yl)- 1,4-oxazepane | KI | 10.6 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3r,5S,6r)-6-(3-(4- fluorophenyl)-1-isopropyl- 1H-pyrazol-5-yl)bicyclo [3.1.0]hexan-3-yl)-1,4- oxazepane | KI | 10.6 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1S,3R)-3-(1-isopropyl-3- (3-(trifluoromethyl)phenyl)- 1H-1,2,4-triazol-5-yl)cyclo- pentyl)morpholine | KI | 10.9 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 1-((1S,3R)-3-(1-isopropyl-3- (6-(trifluoromethyl)pyridin- 3-yl)-1H-1,2,4-triazol-5-yl) cyclopentyl)-4-(2-methoxy- ethyl)piperazine | KI | 10.9 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-(5-((1R,3r,5S,6r)-3-(1,4- oxazepan-4-yl)bicyclo[3.1.0] hexan-6-yl)-1-isopropyl-1H- pyrazol-3-yl)benzonitrile | KI | 10.9 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 1-((1R,3R)-3-(1-isopropyl-3- (6-(trifluoromethyl)pyridin- 3-yl)-1H-pyrazol-5-yl)cyclo- pentyl)-4-(2-methoxyethyl)- piperazine | KI | 11 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| (S)-4-((1R,3s,5S,6S)-6-(1- isopropyl-3-(2-(trifluoro- methyl)pyrimidin-4-yl)-1H- pyrazol-5-yl)bicyclo[3.1.0] hexan-3-yl)-3-methylmor- pholine | KI | 11 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3r,5S,6r)-6-(3-(4- (difluoromethoxy)phenyl)-1- isopropyl-1H-pyrazol-5-yl)- bicyclo[3.1.0]hexan-3-yl)- 1,4-oxazepane | KI | 11 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| (R)-2-ethyl-4-((1R,3S)-3-(3- (5-fluoro-6-(trifluoromethyl)- pyridin-3-yl)-1-isopropyl-1H- 1,2,4-triazol-5-yl)cyclopent- yl)morpholine | KI | 11.3 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3s,5S,6r)-6-(3-(3- (difluoromethoxy)phenyl)-1- isopropyl-1H-pyrazol-5-yl)- bicyclo[3.1.0]hexan-3-yl)- 1,4-oxazepane | KI | 11.6 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3s,5S,6r)-6-(1-iso- propyl-3-(2-(trifluorometh- yl)pyrimidin-4-yl)-1H-pyr- azol-5-yl)bicyclo[3.1.0] hexan-3-yl)morpholine | KI | 11.7 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3s,5S,6r)-6-(1-iso- propyl-3-(6-(trifluorometh- yl)pyrazin-2-yl)-1H-pyrazol- 5-yl)bicyclo[3.1.0]hexan-3- yl)morpholine | KI | 11.7 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3r,5S,6r)-6-(3-(3- (difluoromethoxy)phenyl)-1- isopropyl-1H-1,2,4-triazol-5- yl)bicyclo[3.1.0]hexan-3-yl)- 1,4-oxazepane | KI | 12 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3r,5S,6r)-6-(1- isopropyl-3-(4-(trifluoro- methoxy)phenyl)-1H-pyr- azol-5-yl)bicyclo[3.1.0] hexan-3-yl)-1,4-oxazepane | KI | 12 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1S,3S)-3-(3-(6-fluoro-5- (trifluoromethyl)pyridin-3- yl)-1-isopropyl-1H-1,2,4- triazol-5-yl)cyclopentyl)- morpholine | KI | 12.2 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3s,5S,6r)-6-(1-ethyl- 3-(5-(trifluoromethyl)pyridin- 3-yl)-1H-pyrazol-5-yl)bicyclo [3.1.0]hexan-3-yl)-1,4- oxazepane | KI | 12.5 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 3-(5-((1R,3s,5S,6r)-3-(1,4- oxazepan-4-yl)bicyclo[3.1.0] hexan-6-yl)-1-isopropyl-1H- pyrazol-3-yl)benzonitrile | KI | 12.6 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3r,5S,6r)-6-(3-(3- fluorophenyl)-1-isopropyl- 1H-pyrazol-5-yl)bicyclo [3.1.0]hexan-3-yl)-1,4- oxazepane | KI | 12.7 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3s,5S,6r)-6-(3-(3- fluorophenyl)-1-isopropyl- 1H-pyrazol-5-yl)bicyclo [3.1.0]hexan-3-yl)-1,4- oxazepane | KI | 12.7 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 1-((1S,3R)-3-(1-isopropyl-3- (6-(trifluoromethyl)pyridin- 3-yl)-1H-pyrazol-5-yl)cyclo- pentyl)-4-(2-methoxyethyl) piperazine | KI | 12.8 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1S,3S)-3-(1-isopropyl-3- (5-(trifluoromethyl)pyridin- 3-yl)-1H-pyrazol-5-yl)cyclo- pentyl)-1,4-oxazepane | KI | 13.1 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3s,5S,6r)-6-(3-(2- fluorophenyl)-1-isopropyl- 1H-pyrazol-5-yl)bicyclo [3.1.0]hexan-3-yl)-1,4- oxazepane | KI | 13.1 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3r,5S,6r)-6-(1-iso- propyl-3-(2-(trifluorometh- yl)pyridin-4-yl)-1H-pyrazol- 5-yl)bicyclo[3.1.0]hexan-3- yl)morpholine | KI | 13.4 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3s,5S,6r)-6-(1-iso- propyl-3-(3-(trifluorometh- yl)phenyl)-1H-pyrazol-5-yl)- bicyclo[3.1.0]hexan-3-yl)- 1,4-oxazepane | KI | 14.2 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3R)-3-(1-isopropyl-3- (5-(trifluoromethyl)pyridin- 3-yl)-1H-pyrazol-5-yl)cyclo- pentyl)-1,4-oxazepane | KI | 14.4 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3R)-3-(3-(3-fluoro-4- (trifluoromethyl)phenyl)-1- isopropyl-1H-1,2,4-triazol-5- yl)cyclopentyl)morpholine | KI | 14.7 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| (S)-2-ethyl-4-((1R,3S)-3-(1- isopropyl-3-(2-(trifluoro- methyl)pyrimidin-5-yl)-1H- 1,2,4-triazol-5-yl)cyclopent- yl)morpholine | KI | 14.8 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| (R)-4-((1R,3r,5S,6R)-6-(3- (3-(difluoromethoxy)phenyl)- 1-isopropyl-1H-1,2,4-triazol- 5-yl)bicyclo[3.1.0]hexan-3- yl)-3-methylmorpholine | KI | 15 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| (R)-4-((1R,3r,5S,6R)-6-(1- isopropyl-3-(2-(trifluoro- methyl)pyrimidin-5-yl)-1H- pyrazol-5-yl)bicyclo[3.1.0] hexan-3-yl)-3-methylmor- pholine | KI | 15.1 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| (R)-4-((1R,3r,5S,6R)-6-(1- isopropyl-3-(6-(trifluoro- methyl)pyrimidin-4-yl)-1H- pyrazol-5-yl)bicyclo[3.1.0] hexan-3-yl)-3-methylmor- pholine | KI | 15.1 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1S,3S)-3-(1-isopropyl-3- (3-(trifluoromethyl)phenyl)- 1H-1,2,4-triazol-5-yl)cyclo- pentyl)morpholine | KI | 15.5 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3s,5S,6r)-6-(3-(5- chloropyridin-3-yl)-1-iso- propyl-1H-pyrazol-5-yl)- bicyclo[3.1.0]hexan-3-yl)- 1,4-oxazepane | KI | 15.5 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
| 4-((1R,3S)-3-(1-isopropyl-3- (5-(trifluoromethyl)pyridin- 3-yl)-1H-pyrazol-5-yl)cyclo- pentyl)-1,4-oxazepane | KI | 15.6 nM | US-20260008775: AZOLE MODULATORS OF CHOLESTEROL BIOSYNTHESIS AND THEIR USE FOR PROMOTING REMYELINATION |
ChEMBL bioactivities
37 potent at pChembl≥5 of 39 total, top 36 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 10.00 | IC50 | 0.1 | nM | CHEMBL5281526 |
| 9.00 | Kd | 1 | nM | TAMOXIFEN |
| 8.64 | IC50 | 2.3 | nM | CHEMBL2172347 |
| 8.26 | Kd | 5.497 | nM | CHEMBL5653589 |
| 8.26 | ED50 | 5.497 | nM | CHEMBL5653589 |
| 7.92 | IC50 | 12 | nM | TAMOXIFEN |
| 7.85 | Kd | 14.22 | nM | CHEMBL3752910 |
| 7.85 | ED50 | 14.22 | nM | CHEMBL3752910 |
| 7.66 | IC50 | 22 | nM | 3’-METHOXY-4’HYDROXYCLOMIPHENE |
| 7.52 | IC50 | 30 | nM | CHEMBL222694 |
| 7.52 | IC50 | 30 | nM | CHEMBL5284923 |
| 7.50 | IC50 | 32 | nM | CHEMBL292185 |
| 7.40 | IC50 | 40 | nM | CHEMBL222694 |
| 7.30 | IC50 | 50 | nM | CHEMBL266892 |
| 7.22 | IC50 | 60 | nM | CHEMBL222694 |
| 7.16 | IC50 | 70 | nM | CHEMBL266892 |
| 7.10 | IC50 | 80 | nM | CHEMBL266892 |
| 6.92 | IC50 | 120 | nM | CHEMBL2172349 |
| 6.82 | IC50 | 150 | nM | DOXORUBICIN |
| 6.70 | IC50 | 200 | nM | DOXORUBICIN |
| 6.52 | IC50 | 300 | nM | DOXORUBICIN |
| 6.40 | IC50 | 400 | nM | CHEMBL342394 |
| 6.30 | IC50 | 500 | nM | CHEMBL2172263 |
| 6.22 | IC50 | 600 | nM | (+)-PACHYSAMINE B |
| 6.22 | IC50 | 600 | nM | CHEMBL455316 |
| 5.97 | IC50 | 1070 | nM | CHEMBL5285995 |
| 5.86 | IC50 | 1390 | nM | CHEMBL4454956 |
| 5.70 | IC50 | 2000 | nM | CHEMBL266892 |
| 5.69 | IC50 | 2040 | nM | CHEMBL5270628 |
| 5.55 | IC50 | 2800 | nM | CHEMBL457817 |
| 5.46 | IC50 | 3500 | nM | CHEMBL458033 |
| 5.17 | IC50 | 6800 | nM | CHEMBL505436 |
| 5.14 | IC50 | 7300 | nM | CHEMBL2172350 |
| 5.13 | IC50 | 7400 | nM | CHEMBL456512 |
| 5.10 | IC50 | 8000 | nM | CHEMBL335133 |
| 5.00 | IC50 | 1e+04 | nM | DOXORUBICIN |
PubChem BioAssay actives
35 with measured affinity, of 160 total; 25 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-1-[1-[4-(4-methylphenyl)phenyl]sulfonylpiperidin-4-yl]piperidine | 1923762: Inhibition of DHCR7 (unknown origin) | ic50 | 0.0001 | uM |
| Tamoxifen | 38728: Binding affinity towards antiestrogen binding site AEBS | kd | 0.0010 | uM |
| 2-[2-(4-chlorophenyl)ethyl]-7-methoxy-3,4-dihydro-1H-isoquinolin-6-ol | 703606: Inhibition of 7-dehydroxycholesterol reductase-mediated cholesterol biosynthesis in human HL60 cells assessed as inhibition of 2-[13C]acetate after 24 hrs GC/MS analysis | ic50 | 0.0023 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148234: Binding affinity to human DHCR7 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0055 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148234: Binding affinity to human DHCR7 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0142 | uM |
| 4-[(Z)-2-chloro-1-[4-[2-(diethylamino)ethoxy]phenyl]-2-phenylethenyl]-2-methoxyphenol | 38614: Displacement of [3H]tamoxifen from antiestrogen binding site (AEBS) | ic50 | 0.0220 | uM |
| 2-hydroxy-N-[[[(2S,3S,4S,6R)-3-hydroxy-2-methyl-6-[[(1S,3S)-3,5,12-trihydroxy-3-(2-hydroxyacetyl)-10-methoxy-6,11-dioxo-2,4-dihydro-1H-tetracen-1-yl]oxy]oxan-4-yl]amino]methyl]-5-[(E)-2-[2-[2-[2-[4-[(E)-1-(4-hydroxyphenyl)-2-phenylbut-1-enyl]phenoxy]ethyl-methylamino]ethoxy]ethoxy]ethoxyiminomethyl]benzamide | 282019: Growth inhibition of MCF7 cells expressing ER and antiestrogen binding sites | ic50 | 0.0300 | uM |
| 4-methyl-1-[1-(4-propan-2-yloxyphenyl)sulfonylpiperidin-4-yl]piperidine | 1923762: Inhibition of DHCR7 (unknown origin) | ic50 | 0.0300 | uM |
| 4-[(E)-1-chloro-2-[4-[2-(diethylamino)ethoxy]phenyl]-2-phenylethenyl]-2-methoxyphenol | 38614: Displacement of [3H]tamoxifen from antiestrogen binding site (AEBS) | ic50 | 0.0320 | uM |
| 2-hydroxy-N-[[[(2S,3S,4S,6R)-3-hydroxy-2-methyl-6-[[(1S,3S)-3,5,12-trihydroxy-3-(2-hydroxyacetyl)-10-methoxy-6,11-dioxo-2,4-dihydro-1H-tetracen-1-yl]oxy]oxan-4-yl]amino]methyl]benzamide | 282023: Growth inhibition of MDA-MB-435 cells containing antiestrogen binding sites | ic50 | 0.0500 | uM |
| 7-methoxy-2-[2-(3-methoxyphenyl)ethyl]-3,4-dihydro-1H-isoquinolin-6-ol | 703606: Inhibition of 7-dehydroxycholesterol reductase-mediated cholesterol biosynthesis in human HL60 cells assessed as inhibition of 2-[13C]acetate after 24 hrs GC/MS analysis | ic50 | 0.1200 | uM |
| Doxorubicin | 282023: Growth inhibition of MDA-MB-435 cells containing antiestrogen binding sites | ic50 | 0.1500 | uM |
| (1S)-1-[(3S,8S,9S,10R,13S,14S,17S)-3-methoxy-10,13-dimethyl-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-17-yl]-N,N-dimethylethanamine | 402737: Displacement of [3H]tamoxifen from antiestrogen binding site in Sprague-Dawley rat liver by liquid scintillation counting | ic50 | 0.4000 | uM |
| 4-[2-[4-[(E)-3-(4-chlorophenyl)prop-2-enyl]piperazin-1-yl]ethyl]benzoic acid;sulfuric acid | 703606: Inhibition of 7-dehydroxycholesterol reductase-mediated cholesterol biosynthesis in human HL60 cells assessed as inhibition of 2-[13C]acetate after 24 hrs GC/MS analysis | ic50 | 0.5000 | uM |
| N-[(3R,5S,8R,9S,10S,13S,14S,17S)-17-[(1S)-1-(dimethylamino)ethyl]-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-3-yl]-N,3-dimethylbut-2-enamide | 402737: Displacement of [3H]tamoxifen from antiestrogen binding site in Sprague-Dawley rat liver by liquid scintillation counting | ic50 | 0.6000 | uM |
| [(4R,5R,8S,9S,10R,13S,14S,17S)-3-benzamido-17-[(1S)-1-(dimethylamino)ethyl]-10,13-dimethyl-4,5,6,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-4-yl] acetate | 402737: Displacement of [3H]tamoxifen from antiestrogen binding site in Sprague-Dawley rat liver by liquid scintillation counting | ic50 | 0.6000 | uM |
| N-benzyl-1-(2,4,6-trimethylphenyl)sulfonylpiperidin-4-amine | 1923762: Inhibition of DHCR7 (unknown origin) | ic50 | 1.0700 | uM |
| 1-[1-(2,4,6-trimethylphenyl)sulfonylpiperidin-4-yl]azepane | 1923762: Inhibition of DHCR7 (unknown origin) | ic50 | 1.3900 | uM |
| 3-[1-(2,4,6-trimethylphenyl)sulfonylpiperidin-4-yl]-1,3-diazabicyclo[2.2.2]octane | 1923762: Inhibition of DHCR7 (unknown origin) | ic50 | 2.0400 | uM |
| (3R)-1-[(5R,8S,9S,10R,13S,14S,17S)-17-[(1S)-1-(dimethylamino)ethyl]-10,13-dimethyl-4-oxo-1,5,6,7,8,9,11,12,14,15,16,17-dodecahydrocyclopenta[a]phenanthren-3-yl]-3-propan-2-ylazetidin-2-one | 402737: Displacement of [3H]tamoxifen from antiestrogen binding site in Sprague-Dawley rat liver by liquid scintillation counting | ic50 | 2.8000 | uM |
| (3R)-1-[(5R,8R,9S,10R,13S,14S,16S,17S)-17-[(1S)-1-(dimethylamino)ethyl]-16-hydroxy-10,13-dimethyl-4-oxo-1,5,6,7,8,9,11,12,14,15,16,17-dodecahydrocyclopenta[a]phenanthren-3-yl]-3-propan-2-ylazetidin-2-one | 402737: Displacement of [3H]tamoxifen from antiestrogen binding site in Sprague-Dawley rat liver by liquid scintillation counting | ic50 | 3.5000 | uM |
| [(2R,3S,4R,5R,8S,9S,10R,13S,14S,17S)-17-[(1S)-1-(dimethylamino)ethyl]-3-(1,3-dioxoisoindol-2-yl)-2-hydroxy-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-4-yl] acetate | 402737: Displacement of [3H]tamoxifen from antiestrogen binding site in Sprague-Dawley rat liver by liquid scintillation counting | ic50 | 6.8000 | uM |
| 2-[2-(3,4-dimethoxyphenyl)ethyl]-7-methoxy-3,4-dihydro-1H-isoquinolin-6-ol | 703606: Inhibition of 7-dehydroxycholesterol reductase-mediated cholesterol biosynthesis in human HL60 cells assessed as inhibition of 2-[13C]acetate after 24 hrs GC/MS analysis | ic50 | 7.3000 | uM |
| (3R,5S,8R,9S,10S,13S,14S,17S)-17-[(1S)-1-(dimethylamino)ethyl]-2’,10,13-trimethylspiro[1,2,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydrocyclopenta[a]phenanthrene-3,3’-isoindole]-1’-one | 402737: Displacement of [3H]tamoxifen from antiestrogen binding site in Sprague-Dawley rat liver by liquid scintillation counting | ic50 | 7.4000 | uM |
| N-[(5R,8S,9S,10R,13S,14S,17S)-17-[(1S)-1-(dimethylamino)ethyl]-10,13-dimethyl-4-oxo-1,5,6,7,8,9,11,12,14,15,16,17-dodecahydrocyclopenta[a]phenanthren-3-yl]benzamide | 402737: Displacement of [3H]tamoxifen from antiestrogen binding site in Sprague-Dawley rat liver by liquid scintillation counting | ic50 | 8.0000 | uM |
CTD chemical–gene interactions
111 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Cyclosporine | affects cotreatment, affects expression, decreases expression, increases expression | 5 |
| 7-dehydrocholesterol | increases abundance, increases reduction, decreases activity | 4 |
| sodium arsenite | increases expression, decreases expression, increases abundance | 4 |
| Cisplatin | affects expression, affects cotreatment, increases expression, decreases expression | 4 |
| bisphenol A | affects expression, increases expression | 3 |
| perfluorooctane sulfonic acid | decreases expression | 3 |
| Benzo(a)pyrene | decreases expression | 3 |
| Cholesterol | affects response to substance, decreases abundance, increases chemical synthesis, increases reaction | 3 |
| Valproic Acid | affects expression, decreases expression | 3 |
| Simvastatin | affects response to substance, affects expression, affects reaction, increases chemical synthesis, increases reaction | 3 |
| perfluorooctanoic acid | decreases expression, increases expression | 2 |
| cupric chloride | decreases expression | 2 |
| BM 15766 | decreases activity, increases abundance | 2 |
| Acetaminophen | decreases expression | 2 |
| Arsenic | affects methylation, decreases expression, increases abundance | 2 |
| Estradiol | increases expression | 2 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 2 |
| Tretinoin | decreases expression, increases expression | 2 |
| Aflatoxin B1 | affects expression, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| bisphenol F | increases expression | 1 |
| febrifugine | decreases expression | 1 |
| 22-hydroxycholesterol | decreases expression | 1 |
| pirinixic acid | affects binding, increases activity, increases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| isoquercitrin | affects cotreatment, increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
ChEMBL screening assays
43 unique, capped per target: 23 functional, 20 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2175720 | Binding | Ratio of BM15.766 IC50 to compound IC50 for 7-dehydroxycholesterol reductase-mediated cholesterol biosynthesis in human HL60 cells | A new class of selective and potent 7-dehydrocholesterol reductase inhibitors. — J Med Chem |
| CHEMBL646778 | Functional | Relative binding affinity(RBA) against AEBS (Antiestrogen binding site) using EL-4 cells | Synthesis of 2-(p-chlorobenzyl)-3-aryl-6-methoxybenzofurans as selective ligands for antiestrogen-binding sites. Effects on cell proliferation and cholesterol synthesis. — J Med Chem |
Cellosaurus cell lines
5 cell lines: 3 cancer cell line, 1 finite cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_7439 | GM05788 | Finite cell line | Female |
| CVCL_7440 | GM05789 | Transformed cell line | Female |
| CVCL_B1Q3 | Abcam HeLa DHCR7 KO | Cancer cell line | Female |
| CVCL_SK76 | HAP1 DHCR7 (-) 1 | Cancer cell line | Male |
| CVCL_XN23 | HAP1 DHCR7 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
283 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02933333 | PHASE4 | UNKNOWN | G-CSF Alone or Combination With GM-CSF on Prevention and Treatment of Infection in Children With Malignant Tumor |
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT03017326 | PHASE3 | ACTIVE_NOT_RECRUITING | Paediatric Hepatic International Tumour Trial |
| NCT03533582 | PHASE3 | ACTIVE_NOT_RECRUITING | Cisplatin and Combination Chemotherapy in Treating Children and Young Adults With Hepatoblastoma or Liver Cancer After Surgery |
| NCT04478292 | PHASE3 | RECRUITING | A Multi-institutional Study for Treatment of Children With Newly Diagnosed Hepatoblastoma Using a Modified PHITT Strategy |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT00004347 | PHASE2 | UNKNOWN | Phase II Study of Dietary Cholesterol for Smith-Lemli-Opitz Syndrome |
| NCT00064792 | PHASE2 | COMPLETED | Simvastatin Therapy in Smith-Lemli-Opitz Syndrome |
| NCT00114634 | PHASE2 | COMPLETED | Short-term Behavioral Effects of Cholesterol Therapy in Smith-Lemli-Opitz Syndrome |
| NCT01110642 | PHASE2 | WITHDRAWN | Novel Treatment for Syndromic Ichthyoses |
| NCT01773278 | PHASE2 | RECRUITING | Cholesterol and Antioxidant Treatment in Patients With Smith-Lemli-Opitz Syndrome (SLOS) |
| NCT01154816 | PHASE2 | COMPLETED | Alisertib in Treating Young Patients With Recurrent or Refractory Solid Tumors or Leukemia |
| NCT02011126 | PHASE2 | WITHDRAWN | Imetelstat Sodium in Treating Younger Patients With Relapsed or Refractory Solid Tumors |
| NCT02867592 | PHASE2 | ACTIVE_NOT_RECRUITING | Cabozantinib-S-Malate in Treating Younger Patients With Recurrent, Refractory, or Newly Diagnosed Sarcomas, Wilms Tumor, or Other Rare Tumors |
| NCT03155620 | PHASE2 | ACTIVE_NOT_RECRUITING | Targeted Therapy Directed by Genetic Testing in Treating Pediatric Patients With Relapsed or Refractory Advanced Solid Tumors, Non-Hodgkin Lymphomas, or Histiocytic Disorders (The Pediatric MATCH Screening Trial) |
| NCT03210714 | PHASE2 | ACTIVE_NOT_RECRUITING | Erdafitinib in Treating Patients With Relapsed or Refractory Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With FGFR Mutations (A Pediatric MATCH Treatment Trial) |
| NCT03213652 | PHASE2 | ACTIVE_NOT_RECRUITING | Ensartinib in Treating Patients With Relapsed or Refractory Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With ALK or ROS1 Genomic Alterations (A Pediatric MATCH Treatment Trial) |
| NCT03213665 | PHASE2 | COMPLETED | Tazemetostat in Treating Patients With Relapsed or Refractory Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With EZH2, SMARCB1, or SMARCA4 Gene Mutations (A Pediatric MATCH Treatment Trial) |
| NCT03213678 | PHASE2 | COMPLETED | Samotolisib in Treating Patients With Relapsed or Refractory Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With TSC or PI3K/MTOR Mutations (A Pediatric MATCH Treatment Trial) |
| NCT03213704 | PHASE2 | ACTIVE_NOT_RECRUITING | Larotrectinib in Treating Patients With Relapsed or Refractory Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With NTRK Fusions (A Pediatric MATCH Treatment Trial) |
| NCT03220035 | PHASE2 | COMPLETED | Vemurafenib in Treating Patients With Relapsed or Refractory Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With BRAF V600 Mutations (A Pediatric MATCH Treatment Trial) |
| NCT03233204 | PHASE2 | COMPLETED | Olaparib in Treating Patients With Relapsed or Refractory Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With Defects in DNA Damage Repair Genes (A Pediatric MATCH Treatment Trial) |
| NCT03526250 | PHASE2 | COMPLETED | Palbociclib in Treating Patients With Relapsed or Refractory Rb Positive Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With Activating Alterations in Cell Cycle Genes (A Pediatric MATCH Treatment Trial) |
| NCT03698994 | PHASE2 | ACTIVE_NOT_RECRUITING | Ulixertinib in Treating Patients With Advanced Solid Tumors, Non-Hodgkin Lymphoma, or Histiocytic Disorders With MAPK Pathway Mutations (A Pediatric MATCH Treatment Trial) |
| NCT04195555 | PHASE2 | ACTIVE_NOT_RECRUITING | Ivosidenib in Treating Patients With Advanced Solid Tumors, Lymphoma, or Histiocytic Disorders With IDH1 Mutations (A Pediatric MATCH Treatment Trial) |
| NCT04284774 | PHASE2 | ACTIVE_NOT_RECRUITING | Tipifarnib for the Treatment of Advanced Solid Tumors, Lymphoma, or Histiocytic Disorders With HRAS Gene Alterations, a Pediatric MATCH Treatment Trial |
| NCT04320888 | PHASE2 | ACTIVE_NOT_RECRUITING | Selpercatinib for the Treatment of Advanced Solid Tumors, Lymphomas, or Histiocytic Disorders With Activating RET Gene Alterations, a Pediatric MATCH Treatment Trial |
| NCT05302921 | PHASE2 | COMPLETED | Neoadjuvant Dual Checkpoint Inhibition and Cryoablation in Relapsed/Refractory Pediatric Solid Tumors |
| NCT06638931 | PHASE2 | RECRUITING | Agnostic Therapy in Rare Solid Tumors |
| NCT07300449 | PHASE2 | RECRUITING | A Prospective Multicenter Clinical Study of SCCG Protocol and ctDNA 5hmc in Predicting the Chemotherapy Sensitivity and Monitoring the Recurrence and Metastasis of Hepatoblastoma in Children and Adolescents |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT01331135 | PHASE1 | COMPLETED | Aflac ST0901 CHOANOME - Sirolimus in Solid Tumors |
| NCT02390843 | PHASE1 | COMPLETED | Simvastatin With Topotecan and Cyclophosphamide in Relapsed and/or Refractory Pediatric Solid and CNS Tumors |
| NCT03618381 | PHASE1 | ACTIVE_NOT_RECRUITING | EGFR806 CAR T Cell Immunotherapy for Recurrent/Refractory Solid Tumors in Children and Young Adults |
Related Atlas pages
- Associated diseases: Smith-Lemli-Opitz syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): bullous pemphigoid, hepatoblastoma, Smith-Lemli-Opitz syndrome