DHPS
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Also known as MIG13
Summary
DHPS (deoxyhypusine synthase, HGNC:2869) is a protein-coding gene on chromosome 19p13.13, encoding Deoxyhypusine synthase (P49366). Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a critical lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine residue. It is a selective cancer dependency (DepMap: 89.1% of cell lines).
This gene encodes a protein that is required for the formation of hypusine, a unique amino acid formed by the posttranslational modification of only one protein, eukaryotic translation initiation factor 5A. The encoded protein catalyzes the first step in hypusine formation by transferring the butylamine moiety of spermidine to a specific lysine residue of the eukaryotic translation initiation factor 5A precursor, forming an intermediate deoxyhypusine residue. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene.
Source: NCBI Gene 1725 — RefSeq curated summary.
At a glance
- Gene–disease (curated): neurodevelopmental disorder with seizures and speech and walking impairment (Strong, GenCC)
- GWAS associations: 1
- Clinical variants (ClinVar): 119 total — 4 likely-pathogenic
- Phenotypes (HPO): 31
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer dependency (DepMap): dependent in 89.1% of screened cell lines
- MANE Select transcript:
NM_001930
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2869 |
| Approved symbol | DHPS |
| Name | deoxyhypusine synthase |
| Location | 19p13.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MIG13 |
| Ensembl gene | ENSG00000095059 |
| Ensembl biotype | protein_coding |
| OMIM | 600944 |
| Entrez | 1725 |
Gene structure
Transcript identifiers
Ensembl transcripts: 34 — 20 protein_coding, 7 nonsense_mediated_decay, 6 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000210060, ENST00000351660, ENST00000593400, ENST00000593423, ENST00000593432, ENST00000593473, ENST00000594424, ENST00000595100, ENST00000595844, ENST00000595912, ENST00000596162, ENST00000596847, ENST00000597152, ENST00000598246, ENST00000598850, ENST00000599481, ENST00000600451, ENST00000600510, ENST00000600639, ENST00000600864, ENST00000601537, ENST00000601639, ENST00000862636, ENST00000862637, ENST00000862638, ENST00000862639, ENST00000862640, ENST00000917713, ENST00000917714, ENST00000917715, ENST00000917716, ENST00000917717, ENST00000949481, ENST00000949482
RefSeq mRNA: 6 — MANE Select: NM_001930
NM_001206974, NM_001369691, NM_001369692, NM_001369693, NM_001930, NM_013406
CCDS: CCDS12276, CCDS12277, CCDS59354
Canonical transcript exons
ENST00000210060 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002980445 | 12681560 | 12681880 |
| ENSE00003198419 | 12675717 | 12675933 |
| ENSE00003529524 | 12676017 | 12676142 |
| ENSE00003542520 | 12677108 | 12677211 |
| ENSE00003575774 | 12679623 | 12679719 |
| ENSE00003598808 | 12679801 | 12679922 |
| ENSE00003599470 | 12680161 | 12680325 |
| ENSE00003659082 | 12679457 | 12679543 |
| ENSE00003789308 | 12677291 | 12677396 |
Expression profiles
Bgee: expression breadth ubiquitous, 145 present calls, max score 98.31.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 59.1627 / max 320.5754, expressed in 1822 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 179328 | 54.4123 | 1822 |
| 179327 | 2.3779 | 1335 |
| 179329 | 2.0336 | 1278 |
| 179326 | 0.3390 | 148 |
Top tissues by expression
145 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right hemisphere of cerebellum | UBERON:0014890 | 98.31 | gold quality |
| cerebellum | UBERON:0002037 | 98.26 | gold quality |
| cerebellar cortex | UBERON:0002129 | 98.26 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 98.26 | gold quality |
| cortical plate | UBERON:0005343 | 98.18 | gold quality |
| ganglionic eminence | UBERON:0004023 | 98.06 | gold quality |
| embryo | UBERON:0000922 | 98.05 | gold quality |
| primary visual cortex | UBERON:0002436 | 97.72 | gold quality |
| pituitary gland | UBERON:0000007 | 97.66 | gold quality |
| adenohypophysis | UBERON:0002196 | 97.43 | gold quality |
| right uterine tube | UBERON:0001302 | 97.42 | gold quality |
| left ovary | UBERON:0002119 | 97.28 | gold quality |
| prostate gland | UBERON:0002367 | 97.21 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 97.08 | gold quality |
| prefrontal cortex | UBERON:0000451 | 97.07 | gold quality |
| right ovary | UBERON:0002118 | 97.01 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 96.98 | gold quality |
| ovary | UBERON:0000992 | 96.97 | gold quality |
| endocervix | UBERON:0000458 | 96.94 | gold quality |
| body of uterus | UBERON:0009853 | 96.94 | gold quality |
| frontal cortex | UBERON:0001870 | 96.91 | gold quality |
| frontal lobe | UBERON:0016525 | 96.91 | gold quality |
| fundus of stomach | UBERON:0001160 | 96.79 | gold quality |
| right frontal lobe | UBERON:0002810 | 96.76 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 96.72 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 96.71 | gold quality |
| body of stomach | UBERON:0001161 | 96.69 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 96.68 | gold quality |
| uterine cervix | UBERON:0000002 | 96.67 | gold quality |
| thyroid gland | UBERON:0002046 | 96.60 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 9.96 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CTCF, E2F4, E2F6
miRNA regulators (miRDB)
18 targeting DHPS, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-518D-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-518E-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-518F-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-519A-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519B-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519C-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-520C-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-522-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-523-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-526A-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-3121-3P | 99.82 | 71.96 | 3630 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-4527 | 99.66 | 67.43 | 714 |
| HSA-MIR-6503-5P | 99.62 | 66.96 | 597 |
| HSA-MIR-5197-3P | 98.71 | 67.05 | 1905 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 89.1% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 16)
- deoxyhypusine synthase has a role in generating spermidine or homospermidine (PMID:12788913)
- deoxyhypusine synthase and its phosphorylation modification may have other independent cellular functions because of versatile roles of deoxyhypusine synthase (PMID:14749535)
- crystal structure of deoxyhypusine synthase reveals the configuration of the active enzyme and of an enzyme.NAD.inhibitor ternary complex (PMID:15100216)
- Dhps-437 and dhps-540 are strongly associated with SP treatment failure and should be evaluated further as a method for surveillance of SP-based therapy in DRC. (PMID:19055622)
- A novel series of cell movements that orient the polarity of Lrp12/Mig13a-expressing neurons and their axons just prior to cortical plate assembly do not occur in reeler mutant mice. (PMID:20439316)
- DHPS and WDR83 were capable of forming an RNA duplex at overlapping 3’ untranslated regions and this duplex increased their mutual stability, which was required for the bidirectional regulation. (PMID:22491477)
- eIF-5A as well as the hypusine-forming enzymes deoxyhypusine synthase (DHS) and deoxyhypusine hydroxylase (DOHH) are highly overexpressed in glioblastoma patient sample (PMID:22927971)
- Whereas, dhps mutation study revealed that triple mutant haplotype AGEAA (S436A+A437G+K540E) associated with Sulphadoxine resistance was found among 26% of P. falciparum field isolates. (PMID:25511211)
- the use of N1-Guanyl-1,7-diaminoheptane, a DHPS inhibitor, resulted in a significant decrease in tumor formation in vivo. In patients with esophageal squamous cell carcinoma (ESCC), overexpression of DHPS in ESCC tumors was significantly associated with worse recurrence-free survival, and correlated with distant metastasis. (PMID:27041563)
- data suggest that rare biallelic variants in DHPS result in reduced enzyme activity that limits the hypusination of eIF5A and are associated with a neurodevelopmental disorder (PMID:30661771)
- DHPS-dependent hypusination of eIF5A1/2 is necessary for TGFbeta/fibronectin-induced breast cancer metastasis and associates with prognostically unfavorable genomic alterations in TP53 (PMID:31558321)
- Half Way to Hypusine-Structural Basis for Substrate Recognition by Human Deoxyhypusine Synthase. (PMID:32235505)
- eIF5A-Independent Role of DHPS in p21(CIP1) and Cell Fate Regulation. (PMID:34947982)
- Cryo-EM structure of human eIF5A-DHS complex reveals the molecular basis of hypusination-associated neurodegenerative disorders. (PMID:36973244)
- Deoxyhypusine synthase mutations alter the post-translational modification of eukaryotic initiation factor 5A resulting in impaired human and mouse neural homeostasis. (PMID:37333770)
- Clinical significance of mutations in dihydropteroate synthase in Pneumocystis jirovecii pneumonia among non-HIV-infected patients. (PMID:37925109)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | dhps | ENSDARG00000003270 |
| mus_musculus | Dhps | ENSMUSG00000060038 |
| rattus_norvegicus | Dhps | ENSRNOG00000004219 |
| drosophila_melanogaster | Dhps | FBGN0035854 |
| caenorhabditis_elegans | WBGENE00012460 |
Protein
Protein identifiers
Deoxyhypusine synthase — P49366 (reviewed: P49366)
All UniProt accessions (13): P49366, B4E3M2, M0QX43, M0QXT2, M0QYZ7, M0QZT3, M0R0J4, M0R0V2, M0R1T2, M0R1T4, M0R253, M0R264, Q5J8M5
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a critical lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine residue. This is the first step of the post-translational modification of that lysine into an unusual amino acid residue named hypusine. Hypusination is unique to mature eIF-5A factor and is essential for its function.
Subunit / interactions. Homotetramer formed by a dimer of dimers.
Disease relevance. Neurodevelopmental disorder with seizures and speech and walking impairment (NEDSSWI) [MIM:618480] An autosomal recessive disorder characterized by global developmental delay with intellectual disability and poor speech acquisition, and walking difficulties due to hypotonia, hypertonia, spasticity, or poor coordination. Additional features include seizures, mild dysmorphic features, and variable short stature. The disease is caused by variants affecting the gene represented in this entry.
Pathway. Protein modification; eIF5A hypusination.
Miscellaneous. Inactive.
Similarity. Belongs to the deoxyhypusine synthase family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P49366-1 | Long | yes |
| P49366-2 | Short | |
| P49366-3 | 3 |
RefSeq proteins (6): NP_001193903, NP_001356620, NP_001356621, NP_001356622, NP_001921, NP_037538 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002773 | Deoxyhypusine_synthase | Family |
| IPR029035 | DHS-like_NAD/FAD-binding_dom | Homologous_superfamily |
| IPR036982 | Deoxyhypusine_synthase_sf | Homologous_superfamily |
Pfam: PF01916
Enzyme classification (BRENDA):
- EC 2.5.1.46 — deoxyhypusine synthase (BRENDA: 37 organisms, 87 substrates, 98 inhibitors, 39 Km, 9 kcat entries)
Substrate kinetics (BRENDA)
10 substrates with measured Km, best-characterized 10. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| SPERMIDINE | 0.0006–0.37 | 14 |
| NAD+ | 0.0012–0.81 | 7 |
| [EIF5A-PRECURSOR]-L-LYSINE | 0.0001–1.12 | 5 |
| [EIF5A-PRECURSOR]-LYSINE | 0.0007–0.0018 | 3 |
| 1,3-DIAMINOPROPANE | 0.0954–0.1058 | 2 |
| PUTRESCINE | 0.0015–0.203 | 2 |
| [EIF5A-PRECURSOR]-DEOXYHYPUSINE | 0.0066–0.0086 | 2 |
| HOMOSPERMINE | 0.0193 | 1 |
| [EIF5A-1-PRECURSOR]-LYSINE | 0.0015 | 1 |
| [EIF5A-2-PRECURSOR]-LYSINE | 0.0083 | 1 |
Catalyzed reactions (Rhea), 1 shown:
- [eIF5A protein]-L-lysine + spermidine = [eIF5A protein]-deoxyhypusine + propane-1,3-diamine (RHEA:33299)
UniProt features (76 total): helix 20, mutagenesis site 15, binding site 12, sequence conflict 9, strand 7, turn 5, sequence variant 3, splice variant 2, chain 1, active site 1, modified residue 1
Structure
Experimental structures (PDB)
89 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9IEG | X-RAY DIFFRACTION | 1.27 |
| 9IE3 | X-RAY DIFFRACTION | 1.3 |
| 9IEA | X-RAY DIFFRACTION | 1.3 |
| 9IDT | X-RAY DIFFRACTION | 1.33 |
| 9IDV | X-RAY DIFFRACTION | 1.33 |
| 9IDU | X-RAY DIFFRACTION | 1.34 |
| 9IDW | X-RAY DIFFRACTION | 1.34 |
| 9IE4 | X-RAY DIFFRACTION | 1.34 |
| 9IE1 | X-RAY DIFFRACTION | 1.35 |
| 9IDY | X-RAY DIFFRACTION | 1.37 |
| 9IEN | X-RAY DIFFRACTION | 1.37 |
| 9ID3 | X-RAY DIFFRACTION | 1.39 |
| 9IDO | X-RAY DIFFRACTION | 1.39 |
| 9IDQ | X-RAY DIFFRACTION | 1.39 |
| 9IE2 | X-RAY DIFFRACTION | 1.39 |
| 9IE9 | X-RAY DIFFRACTION | 1.39 |
| 9IEM | X-RAY DIFFRACTION | 1.39 |
| 9IED | X-RAY DIFFRACTION | 1.4 |
| 6XXJ | X-RAY DIFFRACTION | 1.41 |
| 9IDA | X-RAY DIFFRACTION | 1.41 |
| 9IEQ | X-RAY DIFFRACTION | 1.41 |
| 9IE7 | X-RAY DIFFRACTION | 1.42 |
| 9IDF | X-RAY DIFFRACTION | 1.43 |
| 9IDM | X-RAY DIFFRACTION | 1.43 |
| 9IDN | X-RAY DIFFRACTION | 1.43 |
| 9IE5 | X-RAY DIFFRACTION | 1.43 |
| 9ID6 | X-RAY DIFFRACTION | 1.44 |
| 9IDR | X-RAY DIFFRACTION | 1.44 |
| 9IDZ | X-RAY DIFFRACTION | 1.44 |
| 9IET | X-RAY DIFFRACTION | 1.44 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P49366-F1 | 93.95 | 0.89 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 329 (nucleophile)
Ligand- & substrate-binding residues (12): 308–309; 314–316; 323–329; 342–343; 105–109; 131–133; 136–137; 137; 238; 243; 283; 288
Post-translational modifications (1): 78
Mutagenesis-validated functional residues (15):
| Position | Phenotype |
|---|---|
| 106 | strongly reduced nad and spermidine binding. reduced activity. |
| 109 | strongly reduced spermidine binding. reduced activity. |
| 137 | strongly reduced nad binding. strongly reduced formation of covalent intermediate. |
| 238 | strongly reduced nad binding. strongly reduced formation of covalent intermediate. |
| 243 | reduces spermidine binding by 98%. strongly reduced formation of covalent intermediate. |
| 287 | reduces covalent intermediate formation and deoxyhypusine synthesis by 99.5%. retains low spermidine cleavage activity. |
| 288 | reduces spermidine binding by 98%. strongly reduced nad binding. strongly reduced formation of covalent intermediate. |
| 305 | strongly reduced nad binding. no effect on enzyme activity. |
| 313 | strongly reduced nad binding. |
| 316 | reduces spermidine binding by 98%. loss of covalent intermediate formation and deoxyhypusine synthesis. |
| 317 | strongly reduced nad binding. no effect on enzyme activity. |
| 323 | reduces spermidine binding by 98%. strongly reduced formation of covalent intermediate. |
| 327 | reduces spermidine binding by 98%. loss of covalent intermediate formation and deoxyhypusine synthesis. |
| 329 | loss of covalent intermediate formation and deoxyhypusine synthesis. |
| 342 | strongly reduced nad binding. strongly reduced activity. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-204626 | Hypusine synthesis from eIF5A-lysine |
MSigDB gene sets: 263 (showing top):
GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_REGULATION_OF_LEUKOCYTE_PROLIFERATION, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN, HSIAO_HOUSEKEEPING_GENES, GOBP_POSITIVE_REGULATION_OF_CELL_ADHESION, GOBP_POSITIVE_REGULATION_OF_LEUKOCYTE_PROLIFERATION, GOBP_TRANSLATION, GCM_PRKCG, GOBP_CELL_CELL_ADHESION, GOBP_POLYAMINE_METABOLIC_PROCESS, GOBP_PROTEIN_MATURATION, GOBP_LEUKOCYTE_PROLIFERATION, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1, GOBP_POSITIVE_REGULATION_OF_CELL_ACTIVATION
GO Biological Process (8): translation (GO:0006412), spermidine metabolic process (GO:0008216), positive regulation of cell population proliferation (GO:0008284), positive regulation of T cell proliferation (GO:0042102), glucose homeostasis (GO:0042593), spermidine catabolic process (GO:0046203), protein maturation (GO:0051604), peptidyl-hypusine biosynthetic process (GO:0008612)
GO Molecular Function (4): deoxyhypusine synthase activity (GO:0034038), identical protein binding (GO:0042802), protein binding (GO:0005515), transferase activity (GO:0016740)
GO Cellular Component (2): cytoplasm (GO:0005737), cytosol (GO:0005829)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Gamma carboxylation, hypusinylation, hydroxylation, and arylsulfatase activation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein metabolic process | 2 |
| cellular anatomical structure | 2 |
| peptidyltransferase activity | 1 |
| translational initiation | 1 |
| translational elongation | 1 |
| translational termination | 1 |
| macromolecule biosynthetic process | 1 |
| protein biosynthetic process | 1 |
| polyamine metabolic process | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| positive regulation of cellular process | 1 |
| T cell proliferation | 1 |
| regulation of T cell proliferation | 1 |
| positive regulation of lymphocyte proliferation | 1 |
| positive regulation of T cell activation | 1 |
| carbohydrate homeostasis | 1 |
| polyamine catabolic process | 1 |
| spermidine metabolic process | 1 |
| gene expression | 1 |
| biosynthetic process | 1 |
| protein maturation | 1 |
| transferase activity, transferring alkyl or aryl (other than methyl) groups | 1 |
| protein binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
1889 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DHPS | DOHH | Q9BU89 | 997 |
| DHPS | EIF5A | P10159 | 994 |
| DHPS | EIF5AL1 | Q6IS14 | 837 |
| DHPS | EIF5A2 | Q9GZV4 | 793 |
| DHPS | DHFR | P00374 | 789 |
| DHPS | ODC1 | P11926 | 698 |
| DHPS | SRM | P19623 | 691 |
| DHPS | SMS | P52788 | 667 |
| DHPS | SH3BP5 | O60239 | 637 |
| DHPS | AGMAT | Q9BSE5 | 544 |
| DHPS | XPO4 | Q9C0E2 | 531 |
| DHPS | PAOX | Q6QHF9 | 527 |
| DHPS | ATP2B4 | P23634 | 526 |
| DHPS | SMOX | Q9NWM0 | 526 |
| DHPS | WDR83 | Q9BRX9 | 518 |
IntAct
160 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MAPK3 | DHPS | psi-mi:“MI:0915”(physical association) | 0.920 |
| RPL9 | DHPS | psi-mi:“MI:0915”(physical association) | 0.870 |
| DHPS | RPL9 | psi-mi:“MI:0915”(physical association) | 0.870 |
| RPL9 | DHPS | psi-mi:“MI:0914”(association) | 0.870 |
| EIF5A2 | DHPS | psi-mi:“MI:0915”(physical association) | 0.830 |
| DHPS | EIF5A2 | psi-mi:“MI:0915”(physical association) | 0.830 |
| EIF5A2 | DHPS | psi-mi:“MI:0914”(association) | 0.830 |
| MAPK1 | MAPK3 | psi-mi:“MI:0914”(association) | 0.770 |
| MAPK3 | MAPK1 | psi-mi:“MI:0914”(association) | 0.770 |
| RAB27B | DHPS | psi-mi:“MI:0915”(physical association) | 0.720 |
| DHPS | EIF5A | psi-mi:“MI:0915”(physical association) | 0.720 |
| DHPS | RAB27B | psi-mi:“MI:0915”(physical association) | 0.720 |
| EIF5A | DHPS | psi-mi:“MI:0915”(physical association) | 0.720 |
| DHPS | DHPS | psi-mi:“MI:0915”(physical association) | 0.670 |
BioGRID (156): DHPS (Two-hybrid), EIF5A (Two-hybrid), PTPRH (Two-hybrid), RAB27B (Two-hybrid), REL (Two-hybrid), RPL9 (Two-hybrid), ZNF138 (Two-hybrid), VASH1 (Two-hybrid), WDYHV1 (Two-hybrid), EIF5A2 (Two-hybrid), BRCA1 (Two-hybrid), DHPS (Affinity Capture-MS), DHPS (Affinity Capture-MS), DHPS (Affinity Capture-MS), DHPS (Affinity Capture-MS)
ESM2 similar proteins: A2RRU1, A7MB78, A8XKV0, G3ISL7, J9VTK7, O06983, O08739, O09178, O31041, O34823, O34872, O93869, P05033, P0A1Z0, P0A1Z1, P0A9H3, P0A9H4, P0ABE9, P0ABF0, P0DUG1, P0DUM8, P10759, P13807, P13834, P17625, P23109, P23337, P27134, P27472, P28345, P45148, P49366, P52095, P54840, P61517, P61518, P9WEN1, Q01432, Q09580, Q22460
Diamond homologs: A3MVC9, A4YHK6, A6URC0, A8AA61, B0R5L2, B5APK2, B6YVB1, C3MPN8, C3MYN2, C3N5B4, C3NDW8, C3NHT5, C4KGY0, C5A5L0, O26230, O27984, O28088, O50105, O94337, P38791, P49365, P49366, P60038, Q38BX0, Q3TXU5, Q4J978, Q54MQ7, Q58224, Q5JEY0, Q6AY53, Q6CG56, Q6CNG7, Q6EWQ6, Q6FRN2, Q6KZL5, Q6RJS2, Q75EW4, Q8PV89, Q8Q051, Q8SQN2
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ERK1/2 | “up-regulates activity” | DHPS | phosphorylation |
| DHPS | “up-regulates activity” | EIF5A | “post translational modification” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
119 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 4 |
| Uncertain significance | 81 |
| Likely benign | 13 |
| Benign | 4 |
Top pathogenic / likely-pathogenic (4)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1331656 | NM_001930.4(DHPS):c.216_217dup (p.Lys73fs) | Likely pathogenic |
| 2506774 | NM_001930.4(DHPS):c.785-1G>C | Likely pathogenic |
| 4526968 | NM_001930.4(DHPS):c.709dup (p.Thr237fs) | Likely pathogenic |
| 560195 | NM_001930.4(DHPS):c.912_917del (p.Tyr305_Ile306del) | Likely pathogenic |
SpliceAI
1514 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:12675513:C:CA | acceptor_gain | 1.0000 |
| 19:12675521:A:AG | acceptor_gain | 1.0000 |
| 19:12675521:AG:A | acceptor_gain | 1.0000 |
| 19:12675522:G:GA | acceptor_loss | 1.0000 |
| 19:12675522:G:GG | acceptor_gain | 1.0000 |
| 19:12675522:GG:G | acceptor_gain | 1.0000 |
| 19:12675522:GGGT:G | acceptor_gain | 1.0000 |
| 19:12675895:C:CT | acceptor_gain | 1.0000 |
| 19:12675929:TAGAC:T | acceptor_gain | 1.0000 |
| 19:12675931:GACCT:G | acceptor_loss | 1.0000 |
| 19:12675934:C:CC | acceptor_gain | 1.0000 |
| 19:12676012:CTTA:C | donor_loss | 1.0000 |
| 19:12676013:TTA:T | donor_loss | 1.0000 |
| 19:12676014:TA:T | donor_loss | 1.0000 |
| 19:12676015:A:AC | donor_gain | 1.0000 |
| 19:12676015:AC:A | donor_gain | 1.0000 |
| 19:12676016:C:CT | donor_gain | 1.0000 |
| 19:12676016:CC:C | donor_gain | 1.0000 |
| 19:12676138:TTCCG:T | acceptor_gain | 1.0000 |
| 19:12676139:TCCG:T | acceptor_gain | 1.0000 |
| 19:12676140:CCG:C | acceptor_gain | 1.0000 |
| 19:12676140:CCGC:C | acceptor_gain | 1.0000 |
| 19:12676141:CG:C | acceptor_gain | 1.0000 |
| 19:12676141:CGC:C | acceptor_gain | 1.0000 |
| 19:12676143:C:CC | acceptor_gain | 1.0000 |
| 19:12676145:G:C | acceptor_gain | 1.0000 |
| 19:12676154:C:CT | acceptor_gain | 1.0000 |
| 19:12677102:ACTC:A | donor_loss | 1.0000 |
| 19:12677103:CTCA:C | donor_loss | 1.0000 |
| 19:12677104:TCACC:T | donor_loss | 1.0000 |
AlphaMissense
2435 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:12676050:C:A | W327C | 0.999 |
| 19:12676050:C:G | W327C | 0.999 |
| 19:12676052:A:G | W327R | 0.999 |
| 19:12676052:A:T | W327R | 0.999 |
| 19:12677348:C:G | D243H | 0.999 |
| 19:12677359:C:T | G239D | 0.999 |
| 19:12677362:T:A | D238V | 0.999 |
| 19:12677363:C:G | D238H | 0.999 |
| 19:12679534:A:G | W201R | 0.999 |
| 19:12679534:A:T | W201R | 0.999 |
| 19:12679719:C:A | R165S | 0.999 |
| 19:12679719:C:G | R165S | 0.999 |
| 19:12679801:C:A | R165M | 0.999 |
| 19:12679882:T:A | D138V | 0.999 |
| 19:12679882:T:G | D138A | 0.999 |
| 19:12679883:C:G | D138H | 0.999 |
| 19:12679885:T:A | E137V | 0.999 |
| 19:12680206:A:C | S109R | 0.999 |
| 19:12680206:A:T | S109R | 0.999 |
| 19:12680208:T:G | S109R | 0.999 |
| 19:12676110:G:C | N307K | 0.998 |
| 19:12676110:G:T | N307K | 0.998 |
| 19:12677134:G:C | H288D | 0.998 |
| 19:12677135:C:A | K287N | 0.998 |
| 19:12677135:C:G | K287N | 0.998 |
| 19:12677291:C:G | D262H | 0.998 |
| 19:12677347:T:A | D243V | 0.998 |
| 19:12677347:T:G | D243A | 0.998 |
| 19:12677350:C:T | G242D | 0.998 |
| 19:12677351:C:G | G242R | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000133427 (19:12678027 T>A,C,G), RS1000217733 (19:12682860 C>G), RS1000308722 (19:12678753 A>G,T), RS1000433971 (19:12682965 A>C), RS1000465152 (19:12683124 T>C), RS1000624419 (19:12673587 T>C), RS1000718066 (19:12677654 T>C), RS1000730248 (19:12672374 T>C), RS1001158984 (19:12675208 C>G), RS1001400495 (19:12674983 G>A,T), RS1001847921 (19:12683797 C>T), RS1001871017 (19:12673542 T>A,C), RS1001883433 (19:12680288 T>C), RS1002165997 (19:12673912 C>G), RS1002400255 (19:12673711 C>T)
Disease associations
OMIM: gene MIM:600944 | disease phenotypes: MIM:618480
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder with seizures and speech and walking impairment | Strong | Autosomal recessive |
Mondo (1): neurodevelopmental disorder with seizures and speech and walking impairment (MONDO:0032775)
Orphanet (0):
HPO phenotypes
31 total (30 of 31 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000218 | High palate |
| HP:0000219 | Thin upper lip vermilion |
| HP:0000319 | Smooth philtrum |
| HP:0000369 | Low-set ears |
| HP:0000426 | Prominent nasal bridge |
| HP:0000490 | Deeply set eye |
| HP:0000750 | Delayed speech and language development |
| HP:0000960 | Sacral dimple |
| HP:0001250 | Seizure |
| HP:0001252 | Hypotonia |
| HP:0001257 | Spasticity |
| HP:0001263 | Global developmental delay |
| HP:0001562 | Oligohydramnios |
| HP:0001622 | Premature birth |
| HP:0002019 | Constipation |
| HP:0002317 | Unsteady gait |
| HP:0002353 | EEG abnormality |
| HP:0002509 | Limb hypertonia |
| HP:0003593 | Infantile onset |
| HP:0004209 | Clinodactyly of the 5th finger |
| HP:0004322 | Short stature |
| HP:0008936 | Axial hypotonia |
| HP:0010880 | Increased nuchal translucency |
| HP:0011856 | Pica |
| HP:0031936 | Delayed ability to walk |
| HP:0034210 | Fetal intraventricular hemorrhage |
| HP:0100023 | Recurrent hand flapping |
| HP:0100602 | Preeclampsia |
| HP:0100876 | Infra-orbital crease |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST90002401_250 | Platelet distribution width | 3.000000e-09 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007984 | platelet component distribution width |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4415 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 16,499 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL957 | BOSENTAN | 4 | 16,499 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
51 potent at pChembl≥5 of 76 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 8.04 | IC50 | 9.2 | nM | CHEMBL5281395 |
| 7.96 | IC50 | 11 | nM | CHEMBL5265996 |
| 7.92 | IC50 | 12 | nM | CHEMBL5288132 |
| 7.85 | IC50 | 14 | nM | CHEMBL5091313 |
| 7.85 | IC50 | 14 | nM | CHEMBL5269564 |
| 7.75 | IC50 | 18 | nM | CHEMBL5274333 |
| 7.58 | IC50 | 26 | nM | CHEMBL5268272 |
| 7.54 | IC50 | 29 | nM | CHEMBL5267547 |
| 7.52 | IC50 | 30 | nM | CHEMBL5278471 |
| 7.40 | IC50 | 40 | nM | CHEMBL5079375 |
| 7.30 | IC50 | 50 | nM | CHEMBL5074971 |
| 7.21 | IC50 | 62 | nM | CHEMBL4555677 |
| 7.16 | IC50 | 69 | nM | CHEMBL5281395 |
| 7.04 | IC50 | 92 | nM | CHEMBL4543218 |
| 7.00 | IC50 | 100 | nM | CHEMBL5075342 |
| 6.96 | IC50 | 110 | nM | CHEMBL5282634 |
| 6.92 | IC50 | 120 | nM | CHEMBL4462702 |
| 6.85 | IC50 | 140 | nM | CHEMBL229457 |
| 6.82 | IC50 | 150 | nM | CHEMBL5281552 |
| 6.80 | IC50 | 160 | nM | CHEMBL5287156 |
| 6.77 | IC50 | 170 | nM | CHEMBL5288132 |
| 6.75 | IC50 | 180 | nM | CHEMBL5084409 |
| 6.75 | IC50 | 180 | nM | CHEMBL5091281 |
| 6.64 | IC50 | 230 | nM | CHEMBL5265996 |
| 6.50 | IC50 | 320 | nM | CHEMBL5090481 |
| 6.48 | IC50 | 330 | nM | CHEMBL5078063 |
| 6.39 | IC50 | 410 | nM | CHEMBL5269564 |
| 6.37 | IC50 | 430 | nM | CHEMBL4442298 |
| 6.36 | IC50 | 440 | nM | CHEMBL5283409 |
| 6.30 | IC50 | 500 | nM | CHEMBL229457 |
| 6.28 | IC50 | 530 | nM | CHEMBL5091279 |
| 6.25 | IC50 | 560 | nM | CHEMBL5070084 |
| 6.24 | IC50 | 580 | nM | CHEMBL5278471 |
| 6.20 | IC50 | 630 | nM | CHEMBL5267547 |
| 6.19 | IC50 | 640 | nM | CHEMBL5081296 |
| 6.10 | IC50 | 790 | nM | CHEMBL5268272 |
| 6.08 | IC50 | 840 | nM | CHEMBL4447948 |
| 5.93 | IC50 | 1170 | nM | CHEMBL5075319 |
| 5.76 | IC50 | 1720 | nM | CHEMBL229457 |
| 5.64 | IC50 | 2300 | nM | CHEMBL4470208 |
| 5.64 | IC50 | 2290 | nM | CHEMBL5089864 |
| 5.62 | IC50 | 2380 | nM | CHEMBL5080635 |
| 5.37 | IC50 | 4310 | nM | CHEMBL5080971 |
| 5.36 | IC50 | 4420 | nM | CHEMBL5073964 |
| 5.27 | IC50 | 5400 | nM | CHEMBL4572958 |
| 5.26 | IC50 | 5430 | nM | CHEMBL5078229 |
| 5.20 | IC50 | 6300 | nM | CHEMBL5269301 |
| 5.16 | IC50 | 6900 | nM | CHEMBL4555677 |
| 5.09 | IC50 | 8200 | nM | CHEMBL5281757 |
| 5.06 | IC50 | 8700 | nM | CHEMBL5274695 |
PubChem BioAssay actives
51 with measured affinity, of 184 total; 40 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 6-[(2R)-1-amino-4-methylpentan-2-yl]-3-pyridin-3-yl-4,5-dihydrothieno[2,3-c]pyridin-7-one | 1943588: Displacement of [3H]spermidine trihydrochloride from N-terminal 6his tagged TEV fused human DHPS expressed in Escherichia coli BL21 (DE3) incubated for 120 mins in the presence of 14 uM NAD+ by radiometric assay | ic50 | 0.0092 | uM |
| 6-[(2R)-1-amino-3,3-dimethylbutan-2-yl]-3-pyridin-3-yl-4,5-dihydrothieno[2,3-c]pyridin-7-one | 1943588: Displacement of [3H]spermidine trihydrochloride from N-terminal 6his tagged TEV fused human DHPS expressed in Escherichia coli BL21 (DE3) incubated for 120 mins in the presence of 14 uM NAD+ by radiometric assay | ic50 | 0.0110 | uM |
| 6-[(1R)-2-amino-1-cyclohexylethyl]-3-pyridin-3-yl-4,5-dihydrothieno[2,3-c]pyridin-7-one | 1943588: Displacement of [3H]spermidine trihydrochloride from N-terminal 6his tagged TEV fused human DHPS expressed in Escherichia coli BL21 (DE3) incubated for 120 mins in the presence of 14 uM NAD+ by radiometric assay | ic50 | 0.0120 | uM |
| 6-[(1R)-2-amino-1-phenylethyl]-3-pyridin-3-yl-4,5-dihydrothieno[2,3-c]pyridin-7-one | 1943588: Displacement of [3H]spermidine trihydrochloride from N-terminal 6his tagged TEV fused human DHPS expressed in Escherichia coli BL21 (DE3) incubated for 120 mins in the presence of 14 uM NAD+ by radiometric assay | ic50 | 0.0140 | uM |
| 2-(4-bromophenyl)-6-chloro-5-(2-methoxyphenoxy)pyrimidin-4-amine | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 0.0140 | uM |
| 6-(2-amino-1-phenylethyl)-3-pyridin-3-yl-4,5-dihydrothieno[2,3-c]pyridin-7-one | 1943588: Displacement of [3H]spermidine trihydrochloride from N-terminal 6his tagged TEV fused human DHPS expressed in Escherichia coli BL21 (DE3) incubated for 120 mins in the presence of 14 uM NAD+ by radiometric assay | ic50 | 0.0180 | uM |
| 6-(1-aminopentan-2-yl)-3-pyridin-3-yl-4,5-dihydrothieno[2,3-c]pyridin-7-one | 1943588: Displacement of [3H]spermidine trihydrochloride from N-terminal 6his tagged TEV fused human DHPS expressed in Escherichia coli BL21 (DE3) incubated for 120 mins in the presence of 14 uM NAD+ by radiometric assay | ic50 | 0.0260 | uM |
| 6-[2-amino-1-(1-benzothiophen-3-yl)ethyl]-3-pyridin-3-yl-4,5-dihydrothieno[2,3-c]pyridin-7-one | 1943588: Displacement of [3H]spermidine trihydrochloride from N-terminal 6his tagged TEV fused human DHPS expressed in Escherichia coli BL21 (DE3) incubated for 120 mins in the presence of 14 uM NAD+ by radiometric assay | ic50 | 0.0290 | uM |
| 6-(1-aminooctan-2-yl)-3-pyridin-3-yl-4,5-dihydrothieno[2,3-c]pyridin-7-one | 1943588: Displacement of [3H]spermidine trihydrochloride from N-terminal 6his tagged TEV fused human DHPS expressed in Escherichia coli BL21 (DE3) incubated for 120 mins in the presence of 14 uM NAD+ by radiometric assay | ic50 | 0.0300 | uM |
| 6-chloro-5-(2-methoxyphenoxy)-2-(3-methoxyphenyl)pyrimidin-4-amine | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 0.0400 | uM |
| 2-benzyl-6-chloro-5-(2-methoxyphenoxy)pyrimidin-4-amine | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 0.0500 | uM |
| 6-bromo-N-(1H-indol-4-yl)-1-benzothiophene-2-carboxamide | 1561253: Inhibition of human N-terminal His6-tagged TEV protease site linked DHPS expressed in Escherichia coli BL21 (DE3) assessed as reduction in radiolabelled amino-butylidene incorporation in eIF5A using [3H]Spermidine trichloride as substrate after 90 to 120 mins in presence of eIF5A and 14 uM NAD+ by Topcount scintillation counting method | ic50 | 0.0620 | uM |
| N-(1H-indol-4-yl)-6-iodo-1-benzothiophene-2-carboxamide | 1561253: Inhibition of human N-terminal His6-tagged TEV protease site linked DHPS expressed in Escherichia coli BL21 (DE3) assessed as reduction in radiolabelled amino-butylidene incorporation in eIF5A using [3H]Spermidine trichloride as substrate after 90 to 120 mins in presence of eIF5A and 14 uM NAD+ by Topcount scintillation counting method | ic50 | 0.0920 | uM |
| 6-chloro-2-(4-chlorophenyl)-5-(2-methoxyphenoxy)pyrimidin-4-amine | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 0.1000 | uM |
| 6-[2-amino-1-(1H-indol-3-yl)ethyl]-3-pyridin-3-yl-4,5-dihydrothieno[2,3-c]pyridin-7-one | 1943588: Displacement of [3H]spermidine trihydrochloride from N-terminal 6his tagged TEV fused human DHPS expressed in Escherichia coli BL21 (DE3) incubated for 120 mins in the presence of 14 uM NAD+ by radiometric assay | ic50 | 0.1100 | uM |
| 6-chloro-N-(1H-indol-4-yl)-1-benzothiophene-2-carboxamide | 1561253: Inhibition of human N-terminal His6-tagged TEV protease site linked DHPS expressed in Escherichia coli BL21 (DE3) assessed as reduction in radiolabelled amino-butylidene incorporation in eIF5A using [3H]Spermidine trichloride as substrate after 90 to 120 mins in presence of eIF5A and 14 uM NAD+ by Topcount scintillation counting method | ic50 | 0.1200 | uM |
| 2-(7-aminoheptyl)guanidine | 1561253: Inhibition of human N-terminal His6-tagged TEV protease site linked DHPS expressed in Escherichia coli BL21 (DE3) assessed as reduction in radiolabelled amino-butylidene incorporation in eIF5A using [3H]Spermidine trichloride as substrate after 90 to 120 mins in presence of eIF5A and 14 uM NAD+ by Topcount scintillation counting method | ic50 | 0.1400 | uM |
| 6-(2-hydroxy-1-phenylethyl)-3-pyridin-3-yl-4,5-dihydrothieno[2,3-c]pyridin-7-one | 1943588: Displacement of [3H]spermidine trihydrochloride from N-terminal 6his tagged TEV fused human DHPS expressed in Escherichia coli BL21 (DE3) incubated for 120 mins in the presence of 14 uM NAD+ by radiometric assay | ic50 | 0.1500 | uM |
| 6-[(1S)-2-amino-1-phenylethyl]-3-pyridin-3-yl-4,5-dihydrothieno[2,3-c]pyridin-7-one | 1943588: Displacement of [3H]spermidine trihydrochloride from N-terminal 6his tagged TEV fused human DHPS expressed in Escherichia coli BL21 (DE3) incubated for 120 mins in the presence of 14 uM NAD+ by radiometric assay | ic50 | 0.1600 | uM |
| 2-[6-amino-5-(2-methoxyphenoxy)-2-(4-methylphenyl)pyrimidin-4-yl]oxyethanol | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 0.1800 | uM |
| 6-chloro-2-(4-iodophenyl)-5-(2-methoxyphenoxy)pyrimidin-4-amine | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 0.1800 | uM |
| 2-[6-amino-2-benzyl-5-(2-methoxyphenoxy)pyrimidin-4-yl]oxyethanol | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 0.3200 | uM |
| 2-[6-amino-2-(3-fluorophenyl)-5-(2-methoxyphenoxy)pyrimidin-4-yl]oxyethanol | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 0.3300 | uM |
| 6-cyano-N-(1H-indol-4-yl)-1-benzothiophene-2-carboxamide | 1561253: Inhibition of human N-terminal His6-tagged TEV protease site linked DHPS expressed in Escherichia coli BL21 (DE3) assessed as reduction in radiolabelled amino-butylidene incorporation in eIF5A using [3H]Spermidine trichloride as substrate after 90 to 120 mins in presence of eIF5A and 14 uM NAD+ by Topcount scintillation counting method | ic50 | 0.4300 | uM |
| 6-(3-amino-1-phenylpropyl)-3-pyridin-3-yl-4,5-dihydrothieno[2,3-c]pyridin-7-one | 1943588: Displacement of [3H]spermidine trihydrochloride from N-terminal 6his tagged TEV fused human DHPS expressed in Escherichia coli BL21 (DE3) incubated for 120 mins in the presence of 14 uM NAD+ by radiometric assay | ic50 | 0.4400 | uM |
| 6-chloro-5-(2-methoxyphenoxy)-2-phenylpyrimidin-4-amine | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 0.5300 | uM |
| 2-[6-amino-2-(3-iodophenyl)-5-(2-methoxyphenoxy)pyrimidin-4-yl]oxyethanol | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 0.5600 | uM |
| 6-chloro-2-(4-fluorophenyl)-5-(2-methoxyphenoxy)pyrimidin-4-amine | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 0.6400 | uM |
| 4-tert-butyl-N-(1H-indol-4-yl)benzamide | 1561253: Inhibition of human N-terminal His6-tagged TEV protease site linked DHPS expressed in Escherichia coli BL21 (DE3) assessed as reduction in radiolabelled amino-butylidene incorporation in eIF5A using [3H]Spermidine trichloride as substrate after 90 to 120 mins in presence of eIF5A and 14 uM NAD+ by Topcount scintillation counting method | ic50 | 0.8400 | uM |
| 2-[6-amino-5-(2-methoxyphenoxy)-2-(3-methylphenyl)pyrimidin-4-yl]oxyethanol | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 1.1700 | uM |
| 2-[6-amino-2-(4-iodophenyl)-5-(2-methoxyphenoxy)pyrimidin-4-yl]oxyethanol | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 2.2900 | uM |
| N-(1H-indol-4-yl)-1-benzothiophene-2-carboxamide | 1561253: Inhibition of human N-terminal His6-tagged TEV protease site linked DHPS expressed in Escherichia coli BL21 (DE3) assessed as reduction in radiolabelled amino-butylidene incorporation in eIF5A using [3H]Spermidine trichloride as substrate after 90 to 120 mins in presence of eIF5A and 14 uM NAD+ by Topcount scintillation counting method | ic50 | 2.3000 | uM |
| 2-[6-amino-2-(4-fluorophenyl)-5-(2-methoxyphenoxy)pyrimidin-4-yl]oxyethanol | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 2.3800 | uM |
| 2-[6-amino-2-(3-bromophenyl)-5-(2-methoxyphenoxy)pyrimidin-4-yl]oxyethanol | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 4.3100 | uM |
| 2-[6-amino-2-(3-chlorophenyl)-5-(2-methoxyphenoxy)pyrimidin-4-yl]oxyethanol | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 4.4200 | uM |
| 6-tert-butyl-N-(1H-indol-4-yl)-1-benzothiophene-2-carboxamide | 1561253: Inhibition of human N-terminal His6-tagged TEV protease site linked DHPS expressed in Escherichia coli BL21 (DE3) assessed as reduction in radiolabelled amino-butylidene incorporation in eIF5A using [3H]Spermidine trichloride as substrate after 90 to 120 mins in presence of eIF5A and 14 uM NAD+ by Topcount scintillation counting method | ic50 | 5.4000 | uM |
| 2-[6-amino-2-(2-fluorophenyl)-5-(2-methoxyphenoxy)pyrimidin-4-yl]oxyethanol | 1820366: Inhibition of DHPS (unknown origin ) incubated for 30 mins by NAD/NADH-Glow assay | ic50 | 5.4300 | uM |
| 6-benzyl-3-pyridin-3-yl-4,5-dihydrothieno[2,3-c]pyridin-7-one | 1943588: Displacement of [3H]spermidine trihydrochloride from N-terminal 6his tagged TEV fused human DHPS expressed in Escherichia coli BL21 (DE3) incubated for 120 mins in the presence of 14 uM NAD+ by radiometric assay | ic50 | 6.3000 | uM |
| 2-benzyl-5-pyridin-3-yl-3,4-dihydroisoquinolin-1-one | 1943588: Displacement of [3H]spermidine trihydrochloride from N-terminal 6his tagged TEV fused human DHPS expressed in Escherichia coli BL21 (DE3) incubated for 120 mins in the presence of 14 uM NAD+ by radiometric assay | ic50 | 8.2000 | uM |
| 2-benzyl-5-pyridin-3-ylisoquinolin-1-one | 1943588: Displacement of [3H]spermidine trihydrochloride from N-terminal 6his tagged TEV fused human DHPS expressed in Escherichia coli BL21 (DE3) incubated for 120 mins in the presence of 14 uM NAD+ by radiometric assay | ic50 | 8.7000 | uM |
CTD chemical–gene interactions
40 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| decabromobiphenyl ether | affects expression, increases expression | 2 |
| Tretinoin | decreases expression, increases expression | 2 |
| Valproic Acid | affects expression, decreases expression | 2 |
| FR900359 | increases phosphorylation | 1 |
| TAK-243 | increases sumoylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases expression, increases abundance | 1 |
| bisphenol A | decreases expression | 1 |
| beta-lapachone | increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases expression, increases abundance | 1 |
| corosolic acid | increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | increases expression | 1 |
| pentabrominated diphenyl ether 100 | increases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Acrolein | affects cotreatment, increases expression, increases abundance | 1 |
| Air Pollutants | affects cotreatment, increases abundance, increases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Carbamazepine | affects expression | 1 |
| Dinitrochlorobenzene | affects binding | 1 |
| Doxorubicin | increases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Lead | decreases expression | 1 |
| Methyl Methanesulfonate | decreases expression | 1 |
| Nicotine | decreases expression | 1 |
| Ozone | affects cotreatment, increases expression, increases abundance | 1 |
| Rotenone | increases expression | 1 |
ChEMBL screening assays
12 unique, capped per target: 7 binding, 5 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4358945 | Binding | Inhibition of human N-terminal His6-tagged TEV protease site linked DHPS expressed in Escherichia coli BL21 (DE3) assessed as reduction in radiolabelled amino-butylidene incorporation in eIF5A using [3H]Spermidine trichloride as substrate a | Discovery of Novel Allosteric Inhibitors of Deoxyhypusine Synthase. — J Med Chem |
| CHEMBL653163 | Functional | Effect on hypusine synthesis in CHO cells at concentration 10 uM. | Diamine and triamine analogs and derivatives as inhibitors of deoxyhypusine synthase: synthesis and biological activity. — J Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: neurodevelopmental disorder with seizures and speech and walking impairment
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): neurodevelopmental disorder with seizures and speech and walking impairment