DHRS7
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Also known as retDSR4SDR34C1
Summary
DHRS7 (dehydrogenase/reductase 7, HGNC:21524) is a protein-coding gene on chromosome 14q23.1, encoding Dehydrogenase/reductase SDR family member 7 (Q9Y394). NADPH-dependent oxidoreductase which catalyzes the reduction of a variety of compounds bearing carbonyl groups including steroids, retinoids and xenobiotics.
This gene encodes a member of the short-chain dehydrogenases/reductases (SDR) family, which has over 46,000 members. Members in this family are enzymes that metabolize many different compounds, such as steroid hormones, prostaglandins, retinoids, lipids and xenobiotics.
Source: NCBI Gene 51635 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 69 total
- MANE Select transcript:
NM_016029
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:21524 |
| Approved symbol | DHRS7 |
| Name | dehydrogenase/reductase 7 |
| Location | 14q23.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | retDSR4, SDR34C1 |
| Ensembl gene | ENSG00000100612 |
| Ensembl biotype | protein_coding |
| OMIM | 612833 |
| Entrez | 51635 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 8 protein_coding, 2 protein_coding_CDS_not_defined, 2 retained_intron
ENST00000216500, ENST00000536410, ENST00000553328, ENST00000553986, ENST00000554101, ENST00000555171, ENST00000556502, ENST00000557137, ENST00000557185, ENST00000557326, ENST00000557751, ENST00000931888
RefSeq mRNA: 4 — MANE Select: NM_016029
NM_001322280, NM_001322281, NM_001322282, NM_016029
CCDS: CCDS81810, CCDS9743
Canonical transcript exons
ENST00000557185 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002437735 | 60144119 | 60145013 |
| ENSE00002513307 | 60165177 | 60165398 |
| ENSE00003532660 | 60153959 | 60154065 |
| ENSE00003556296 | 60152939 | 60153178 |
| ENSE00003592756 | 60156000 | 60156152 |
| ENSE00003894565 | 60150065 | 60150187 |
| ENSE00003895113 | 60149353 | 60149568 |
Expression profiles
Bgee: expression breadth ubiquitous, 297 present calls, max score 99.26.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 47.3612 / max 758.6153, expressed in 1809 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 143497 | 24.0862 | 1800 |
| 143496 | 19.8188 | 1784 |
| 143495 | 2.7837 | 1304 |
| 143498 | 0.6364 | 307 |
| 143501 | 0.0159 | 3 |
| 207242 | 0.0083 | 3 |
| 143499 | 0.0069 | 2 |
| 143500 | 0.0051 | 1 |
Top tissues by expression
301 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| parotid gland | UBERON:0001831 | 99.26 | gold quality |
| gastrocnemius | UBERON:0001388 | 98.97 | gold quality |
| muscle of leg | UBERON:0001383 | 98.67 | gold quality |
| calcaneal tendon | UBERON:0003701 | 98.22 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 98.09 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 98.06 | gold quality |
| left adrenal gland | UBERON:0001234 | 98.05 | gold quality |
| blood | UBERON:0000178 | 97.99 | gold quality |
| granulocyte | CL:0000094 | 97.96 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 97.94 | gold quality |
| seminal vesicle | UBERON:0000998 | 97.89 | gold quality |
| gluteal muscle | UBERON:0002000 | 97.88 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 97.87 | gold quality |
| monocyte | CL:0000576 | 97.86 | gold quality |
| leukocyte | CL:0000738 | 97.86 | gold quality |
| mononuclear cell | CL:0000842 | 97.83 | gold quality |
| body of stomach | UBERON:0001161 | 97.83 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 97.82 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 97.81 | gold quality |
| minor salivary gland | UBERON:0001830 | 97.75 | gold quality |
| right adrenal gland | UBERON:0001233 | 97.71 | gold quality |
| prostate gland | UBERON:0002367 | 97.65 | gold quality |
| islet of Langerhans | UBERON:0000006 | 97.61 | gold quality |
| jejunal mucosa | UBERON:0000399 | 97.57 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 97.51 | gold quality |
| adrenal gland | UBERON:0002369 | 97.49 | gold quality |
| adrenal cortex | UBERON:0001235 | 97.48 | gold quality |
| biceps brachii | UBERON:0001507 | 97.46 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 97.45 | gold quality |
| small intestine | UBERON:0002108 | 97.40 | gold quality |
Single-cell (SCXA)
Detected in 12 experiment(s), a significant marker in 8.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-125970 | yes | 64.39 |
| E-CURD-122 | yes | 38.71 |
| E-HCAD-31 | yes | 34.72 |
| E-MTAB-7316 | yes | 29.53 |
| E-GEOD-81608 | yes | 19.46 |
| E-MTAB-5061 | yes | 16.07 |
| E-CURD-114 | yes | 11.46 |
| E-GEOD-106540 | no | 977.86 |
| E-CURD-89 | no | 404.71 |
| E-MTAB-6524 | no | 170.17 |
| E-ENAD-27 | no | 10.16 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
74 targeting DHRS7, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AK | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AM-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AP-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548AQ-5P | 99.94 | 71.34 | 3426 |
| HSA-MIR-548AR-5P | 99.94 | 71.28 | 3515 |
| HSA-MIR-548AS-5P | 99.94 | 71.22 | 3482 |
| HSA-MIR-548AU-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AY-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548B-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548BB-5P | 99.94 | 71.27 | 3509 |
| HSA-MIR-548C-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548D-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548H-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548I | 99.94 | 71.25 | 3481 |
| HSA-MIR-548J-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548O-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548W | 99.94 | 71.24 | 3488 |
| HSA-MIR-548Y | 99.94 | 71.28 | 3514 |
| HSA-MIR-144-3P | 99.94 | 73.98 | 2698 |
| HSA-MIR-3682-5P | 99.93 | 67.97 | 1163 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
Literature-anchored findings (GeneRIF, showing 7)
- DHRS7 is another enzyme from SDR superfamily that have been proved, at least in vitro, to contribute to the metabolism of xenobiotics with carbonyl group. (PMID:24246760)
- DHRS7 containing TEV-cleavable His10 and FLAG-tag was cloned and expressed in the Sf9 cell line. (PMID:24316191)
- DHRS7 participates in the reductive metabolism of steroids and retinoids.Expression patterns of DHRS7 at the mRNA as well as protein level were determined in a panel of various human tissue samples. (PMID:26466768)
- Data suggest that (1) cortisone is a substrate of DHRS7 and is reduced to 20beta-dihydrocortisone, (2) androstenedione is not a relevant substrate of DHRS7, (3) DHRS7 catalyzes the oxidoreduction of 5alpha-dihydrotestosterone to 3alpha-androstanediol with a suppressive effect on androgen receptor transcriptional activity, and (4) DHRS7 is anchored in endoplasmic reticulum membrane with cytoplasmic orientation. (PMID:28457967)
- identification of new substrates of human DHRS7 (PMID:28687384)
- Single nucleotide polymorphism in DHRS7 gene is associated with smoking in African americans. (PMID:29216386)
- Reduction in Nuclear Size by DHRS7 in Prostate Cancer Cells and by Estradiol Propionate in DHRS7-Depleted Cells. (PMID:38201261)
Cross-species orthologs
14 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | dhrs7 | ENSDARG00000003444 |
| mus_musculus | Dhrs7 | ENSMUSG00000021094 |
| mus_musculus | Dhrs7l | ENSMUSG00000109482 |
| rattus_norvegicus | Dhrs7 | ENSRNOG00000005589 |
| rattus_norvegicus | Dhrs7l1 | ENSRNOG00000025648 |
| rattus_norvegicus | LOC120093108 | ENSRNOG00000067058 |
| drosophila_melanogaster | CG31937 | FBGN0031360 |
| caenorhabditis_elegans | WBGENE00000970 | |
| caenorhabditis_elegans | WBGENE00000975 | |
| caenorhabditis_elegans | WBGENE00000981 | |
| caenorhabditis_elegans | WBGENE00008985 | |
| caenorhabditis_elegans | WBGENE00008986 | |
| caenorhabditis_elegans | WBGENE00011424 | |
| caenorhabditis_elegans | WBGENE00022809 |
Paralogs (13): RDH8 (ENSG00000080511), DHRS2 (ENSG00000100867), DHRS7B (ENSG00000109016), HSD11B1 (ENSG00000117594), HSDL2 (ENSG00000119471), DHRS4 (ENSG00000157326), DHRS1 (ENSG00000157379), CBR1 (ENSG00000159228), CBR3 (ENSG00000159231), HSD11B1L (ENSG00000167733), DHRS7C (ENSG00000184544), DHRS4L2 (ENSG00000187630), DHRS11 (ENSG00000278535)
Protein
Protein identifiers
Dehydrogenase/reductase SDR family member 7 — Q9Y394 (reviewed: Q9Y394)
Alternative names: Retinal short-chain dehydrogenase/reductase 4, Short chain dehydrogenase/reductase family 34C member 1
All UniProt accessions (5): Q9Y394, G3V5J0, H0YJ66, H0YJE4, H0YJR8
UniProt curated annotations — full annotation on UniProt →
Function. NADPH-dependent oxidoreductase which catalyzes the reduction of a variety of compounds bearing carbonyl groups including steroids, retinoids and xenobiotics. Catalyzes the reduction/inactivation of 5alpha-dihydrotestosterone to 3alpha-androstanediol, with a possible role in the modulation of androgen receptor function. Involved in the reduction of all-trans-retinal to all-trans-retinol. Converts cortisone to 20beta-dihydrocortisone in vitro, although the physiological relevance of this activity is questionable. Reduces exogenous compounds such as quinones (1,2-naphtoquinone, 9,10-phenantrenequinone and benzoquinone) and other xenobiotics (alpha-diketones) in vitro, suggesting a role in the biotransformation of xenobiotics with carbonyl group. A dehydrogenase activity has not been detected so far. May play a role as tumor suppressor.
Subcellular location. Endoplasmic reticulum membrane.
Tissue specificity. Found predominantly in the adrenal glands, liver, thyroid, prostate, small intestine, colon, stomach, kidney and brain. Lower levels observed in skeletal muscle, the lung and the spleen.
Similarity. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9Y394-1 | 1 | yes |
| Q9Y394-2 | 2 |
RefSeq proteins (4): NP_001309209, NP_001309210, NP_001309211, NP_057113* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002347 | SDR_fam | Family |
| IPR020904 | Sc_DH/Rdtase_CS | Conserved_site |
| IPR036291 | NAD(P)-bd_dom_sf | Homologous_superfamily |
| IPR053011 | SDR_family_member_7 | Family |
Pfam: PF00106
Catalyzed reactions (Rhea), 2 shown:
- all-trans-retinol + NADP(+) = all-trans-retinal + NADPH + H(+) (RHEA:25033)
- 5alpha-androstane-3alpha,17beta-diol + NADP(+) = 17beta-hydroxy-5alpha-androstan-3-one + NADPH + H(+) (RHEA:42116)
UniProt features (11 total): binding site 6, signal peptide 1, chain 1, sequence variant 1, active site 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9Y394-F1 | 94.21 | 0.86 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 203 (proton acceptor)
Ligand- & substrate-binding residues (6): 60; 62; 190; 203; 207; 239
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 197 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_UP, CHIARADONNA_NEOPLASTIC_TRANSFORMATION_KRAS_DN, MODULE_151, ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_DN, IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR, GOBP_REGULATION_OF_HORMONE_LEVELS, GOBP_RETINOL_METABOLIC_PROCESS, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1, RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_DN, DEURIG_T_CELL_PROLYMPHOCYTIC_LEUKEMIA_DN, LANDIS_ERBB2_BREAST_PRENEOPLASTIC_DN, SCHAEFFER_PROSTATE_DEVELOPMENT_48HR_DN, GOBP_LIPID_METABOLIC_PROCESS, SCHLOSSER_SERUM_RESPONSE_DN, BOYAULT_LIVER_CANCER_SUBCLASS_G1_UP
GO Biological Process (1): retinol metabolic process (GO:0042572)
GO Molecular Function (5): carbonyl reductase (NADPH) activity (GO:0004090), oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), all-trans-retinol dehydrogenase (NADP+) activity (GO:0052650), protein binding (GO:0005515), oxidoreductase activity (GO:0016491)
GO Cellular Component (3): endoplasmic reticulum membrane (GO:0005789), membrane (GO:0016020), endoplasmic reticulum (GO:0005783)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| alcohol dehydrogenase (NADP+) activity | 2 |
| retinoid metabolic process | 1 |
| primary alcohol metabolic process | 1 |
| hormone metabolic process | 1 |
| olefinic compound metabolic process | 1 |
| oxidoreductase activity, acting on CH-OH group of donors | 1 |
| retinol metabolic process | 1 |
| binding | 1 |
| catalytic activity | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| cellular anatomical structure | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
3195 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DHRS7 | TMEM126A | Q9H061 | 540 |
| DHRS7 | TMEM38A | Q9H6F2 | 515 |
| DHRS7 | HECTD3 | Q5T447 | 461 |
| DHRS7 | DHRS1 | Q96LJ7 | 437 |
| DHRS7 | KIAA2013 | Q8IYS2 | 427 |
| DHRS7 | TMEM209 | Q96SK2 | 383 |
| DHRS7 | PCNX4 | Q63HM2 | 374 |
| DHRS7 | SEC61A1 | P38378 | 369 |
| DHRS7 | AIDA | Q96BJ3 | 368 |
| DHRS7 | MIPOL1 | Q8TD10 | 364 |
| DHRS7 | HAO2 | Q9NYQ3 | 364 |
| DHRS7 | TMTC3 | Q6ZXV5 | 363 |
| DHRS7 | CYBC1 | Q9BQA9 | 348 |
| DHRS7 | SDR42E1 | Q8WUS8 | 341 |
| DHRS7 | SLC25A29 | Q8N8R3 | 331 |
IntAct
132 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| ASPH | STXBP3 | psi-mi:“MI:0914”(association) | 0.640 |
| STX12 | SNAP23 | psi-mi:“MI:0914”(association) | 0.640 |
| TRDN | TMEM223 | psi-mi:“MI:0914”(association) | 0.640 |
| FAM234B | ABCD4 | psi-mi:“MI:0914”(association) | 0.620 |
| DHRS7 | TMEM120A | psi-mi:“MI:0915”(physical association) | 0.560 |
| TMEM120A | DHRS7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SACM1L | DHRS7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PCDHAC2 | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| SPINT2 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| MCOLN3 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| EVA1C | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| PLXDC2 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| PTGER3 | PIK3R2 | psi-mi:“MI:0914”(association) | 0.530 |
| CHRNA9 | CHEK1 | psi-mi:“MI:0914”(association) | 0.530 |
| SCN3B | ABCC5 | psi-mi:“MI:0914”(association) | 0.530 |
| CPNE5 | RAD21 | psi-mi:“MI:0914”(association) | 0.530 |
| TLR5 | MAN1A2 | psi-mi:“MI:0914”(association) | 0.530 |
| CHRND | TPST2 | psi-mi:“MI:0914”(association) | 0.530 |
| TREML2 | SNX2 | psi-mi:“MI:0914”(association) | 0.530 |
| SRPRB | CTDNEP1 | psi-mi:“MI:0914”(association) | 0.530 |
| NPTN | TNPO2 | psi-mi:“MI:0914”(association) | 0.530 |
| SIDT2 | AP3D1 | psi-mi:“MI:0914”(association) | 0.530 |
| KCNA2 | FADS1 | psi-mi:“MI:0914”(association) | 0.530 |
| LPAR1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| NRAS | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.480 |
BioGRID (219): DHRS7 (Affinity Capture-MS), DHRS7 (Affinity Capture-MS), DHRS7 (Affinity Capture-MS), DHRS7 (Affinity Capture-MS), DHRS7 (Affinity Capture-MS), DHRS7 (Affinity Capture-MS), DHRS7 (Affinity Capture-MS), DHRS7 (Affinity Capture-MS), DHRS7 (Affinity Capture-MS), DHRS7 (Affinity Capture-MS), DHRS7 (Affinity Capture-MS), DHRS7 (Affinity Capture-MS), DHRS7 (Affinity Capture-MS), DHRS7 (Affinity Capture-MS), DHRS7 (Proximity Label-MS)
ESM2 similar proteins: A0JPE9, A2AJL3, A2VD33, O46504, O75191, P12276, P12785, P13439, P17256, P19096, P31754, Q08D86, Q0IH28, Q0VFE7, Q3MIF4, Q3SYZ6, Q3TNA1, Q4V831, Q4V9P6, Q503J2, Q566S6, Q5M7T9, Q5R979, Q5RFE6, Q5U5V2, Q5XH07, Q5XIG6, Q5ZMJ4, Q64FG0, Q68FH4, Q6DCD1, Q6DH69, Q6GMR7, Q6GP95, Q6NUM9, Q6NUW9, Q6ZS86, Q71SP7, Q7TSQ8, Q80SY6
Diamond homologs: A0A017SEY2, A0A023I4F1, A0A0C6DRT7, A0A1B7YCL6, A0A2P1DP77, A0A345BJN5, A0A482ND39, A0A4P8DJW5, A0A5B8YU33, A0AAW1NHX6, A2RVM0, B2X050, B6H062, B6HLP6, B8M9L2, C8V3Y7, D7UQ42, F4JJR8, G1XTZ5, G3Y422, G4MVZ5, G9N4A1, G9N4A6, I1S2J3, O48741, O75828, O80333, P00335, P0DXW2, P15428, P16232, P19992, P21218, P28845, P42317, P50199, P50203, P51975, P70684, P9WEF8
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 151 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Signaling by SCF-KIT | 5 | 13.8× | 1e-03 |
| Stimuli-sensing channels | 5 | 7.5× | 7e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| membrane depolarization | 5 | 20.8× | 3e-03 |
| monoatomic ion transmembrane transport | 6 | 10.2× | 9e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
69 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 53 |
| Likely benign | 2 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
957 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 14:60150186:CC:C | acceptor_gain | 1.0000 |
| 14:60150187:CC:C | acceptor_gain | 1.0000 |
| 14:60153100:G:C | donor_gain | 1.0000 |
| 14:60154062:TTCT:T | acceptor_gain | 1.0000 |
| 14:60154064:CT:C | acceptor_gain | 1.0000 |
| 14:60154066:C:CC | acceptor_gain | 1.0000 |
| 14:60155994:GCTTA:G | donor_loss | 1.0000 |
| 14:60155995:CTTA:C | donor_loss | 1.0000 |
| 14:60155996:TTACC:T | donor_loss | 1.0000 |
| 14:60155997:TACCT:T | donor_loss | 1.0000 |
| 14:60155998:A:C | donor_loss | 1.0000 |
| 14:60156149:CATT:C | acceptor_gain | 1.0000 |
| 14:60156151:TT:T | acceptor_gain | 1.0000 |
| 14:60156151:TTC:T | acceptor_loss | 1.0000 |
| 14:60156152:TCTA:T | acceptor_loss | 1.0000 |
| 14:60156153:C:CC | acceptor_gain | 1.0000 |
| 14:60156153:CT:C | acceptor_loss | 1.0000 |
| 14:60156164:A:AC | acceptor_gain | 1.0000 |
| 14:60156164:A:C | acceptor_gain | 1.0000 |
| 14:60156166:G:C | acceptor_gain | 1.0000 |
| 14:60145011:ATCC:A | acceptor_loss | 0.9900 |
| 14:60145012:TC:T | acceptor_gain | 0.9900 |
| 14:60145013:CC:C | acceptor_gain | 0.9900 |
| 14:60145015:T:C | acceptor_loss | 0.9900 |
| 14:60149352:CCA:C | donor_gain | 0.9900 |
| 14:60149374:AAT:A | donor_gain | 0.9900 |
| 14:60149477:T:TA | donor_gain | 0.9900 |
| 14:60149569:C:CC | acceptor_gain | 0.9900 |
| 14:60150059:TTTTA:T | donor_loss | 0.9900 |
| 14:60150060:TTTAC:T | donor_loss | 0.9900 |
AlphaMissense
2195 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 14:60152954:G:C | S206R | 0.994 |
| 14:60152954:G:T | S206R | 0.994 |
| 14:60152956:T:G | S206R | 0.994 |
| 14:60149472:A:G | W285R | 0.990 |
| 14:60149472:A:T | W285R | 0.990 |
| 14:60156126:A:G | W54R | 0.988 |
| 14:60156126:A:T | W54R | 0.988 |
| 14:60153002:G:C | S190R | 0.986 |
| 14:60153002:G:T | S190R | 0.986 |
| 14:60153004:T:G | S190R | 0.986 |
| 14:60149510:A:G | L272P | 0.984 |
| 14:60150117:C:T | G235E | 0.984 |
| 14:60150118:C:G | G235R | 0.980 |
| 14:60150118:C:T | G235R | 0.980 |
| 14:60152951:C:A | K207N | 0.980 |
| 14:60152951:C:G | K207N | 0.980 |
| 14:60149520:A:G | C269R | 0.978 |
| 14:60149497:G:C | S276R | 0.974 |
| 14:60149497:G:T | S276R | 0.974 |
| 14:60149499:T:G | S276R | 0.974 |
| 14:60153003:C:A | S190I | 0.973 |
| 14:60152965:A:G | Y203H | 0.972 |
| 14:60152995:C:G | G193R | 0.972 |
| 14:60153005:A:C | N189K | 0.971 |
| 14:60153005:A:T | N189K | 0.971 |
| 14:60156089:A:G | L66P | 0.971 |
| 14:60149522:C:G | R268P | 0.969 |
| 14:60152946:G:T | A209D | 0.969 |
| 14:60153079:C:A | G165W | 0.968 |
| 14:60150117:C:A | G235V | 0.967 |
dbSNP variants (sampled 300 via entrez): RS1000054383 (14:60145203 C>A,T), RS1000163854 (14:60144150 GAAT>G), RS1000438300 (14:60151237 T>C), RS1000444571 (14:60152788 T>C), RS1000505381 (14:60145757 C>T), RS1001079555 (14:60159587 T>A), RS1001522348 (14:60160053 C>A,G,T), RS1001538436 (14:60166657 C>A,T), RS1001568151 (14:60171876 T>C), RS1001642312 (14:60166315 G>A), RS1001908605 (14:60161267 T>A), RS1002123716 (14:60147738 T>C), RS1002177581 (14:60147478 A>T), RS1002324588 (14:60153601 C>A), RS1002364735 (14:60167692 T>C)
Disease associations
OMIM: gene MIM:612833 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001310_6 | Allergic rhinitis | 2.000000e-06 |
| GCST009462_78 | Optic disc size | 3.000000e-27 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
71 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression, decreases methylation | 7 |
| sodium arsenite | affects cotreatment, increases abundance, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tetrachlorodibenzodioxin | increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| dicrotophos | decreases expression | 1 |
| beauvericin | affects cotreatment, increases expression | 1 |
| quinone | increases reduction | 1 |
| 9,10-phenanthrenequinone | increases reduction | 1 |
| triphenyl phosphate | affects expression | 1 |
| benzil | increases reduction | 1 |
| bisphenol A | increases expression | 1 |
| lead acetate | increases expression | 1 |
| sodium arsenate | decreases expression | 1 |
| 4-(N-methyl-N-nitrosamino)-1-(3-pyridyl)-1-butanone | increases reduction | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| zinc chromate | increases abundance, increases expression | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| 4-nitrobenzaldehyde | increases reduction | 1 |
| 1,2-naphthoquinone | increases reduction | 1 |
| chromium hexavalent ion | increases abundance, increases expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| chloropicrin | decreases expression | 1 |
| enniatins | affects cotreatment, increases expression | 1 |
| deguelin | increases expression | 1 |
| monomethylarsonous acid | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| erucylphospho-N,N,N-trimethylpropylammonium | increases expression | 1 |
| nutlin 3 | affects cotreatment, increases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): seasonal allergic rhinitis