DHRSX
gene geneOn this page
Also known as DHRS5XDHRSXYDHRSYDHRS5YSDR46C1SDR7C6
Summary
DHRSX (dehydrogenase/reductase X-linked, HGNC:18399) is a protein-coding gene on chromosome Xp22.33 and Yp11.2, encoding Polyprenol dehydrogenase (Q8N5I4). Oxidoreductase that plays a key role in early steps of protein N-linked glycosylation by mediating two non-consecutive steps in dolichol biosynthesis.
Enables dolichal reductase [NAD(P)+] activity and polyprenol dehydrogenase activity. Involved in dolichol biosynthetic process and positive regulation of autophagy. Located in extracellular region. Is active in lipid droplet.
Source: NCBI Gene 207063 — RefSeq curated summary.
At a glance
- Gene–disease (curated): congenital disorder of glycosylation, type 1DD (Strong, GenCC)
- Clinical variants (ClinVar): 136 total — 3 pathogenic
- Phenotypes (HPO): 31
- MANE Select transcript:
NM_145177
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:18399 |
| Approved symbol | DHRSX |
| Name | dehydrogenase/reductase X-linked |
| Location | Xp22.33 and Yp11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DHRS5X, DHRSXY, DHRSY, DHRS5Y, SDR46C1, SDR7C6 |
| Ensembl gene | ENSG00000169084 |
| Ensembl biotype | protein_coding |
| OMIM | 301034 |
| Entrez | 207063 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 4 protein_coding, 3 protein_coding_CDS_not_defined
ENST00000334651, ENST00000412516, ENST00000430536, ENST00000441131, ENST00000444280, ENST00000464935, ENST00000478825
RefSeq mRNA: 1 — MANE Select: NM_145177
NM_145177
CCDS: CCDS35195
Canonical transcript exons
ENST00000334651 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001487873 | 2219506 | 2221229 |
| ENSE00001679842 | 2500817 | 2500976 |
| ENSE00001761946 | 2266740 | 2266947 |
| ENSE00001931920 | 2243023 | 2243230 |
| ENSE00003532451 | 2291502 | 2291603 |
| ENSE00003549694 | 2425197 | 2425304 |
| ENSE00003638780 | 2408745 | 2408813 |
Expression profiles
Bgee: expression breadth ubiquitous, 200 present calls, max score 91.64.
FANTOM5 (CAGE): breadth broad, TPM avg 2.0096 / max 46.7731, expressed in 530 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 198288 | 7.4608 | 620 |
| 198287 | 1.7910 | 470 |
| 209889 | 0.1991 | 79 |
| 198289 | 0.0993 | 45 |
| 198285 | 0.0896 | 35 |
| 198290 | 0.0297 | 11 |
Top tissues by expression
246 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| stromal cell of endometrium | CL:0002255 | 91.64 | gold quality |
| ventricular zone | UBERON:0003053 | 90.84 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 89.70 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 89.02 | gold quality |
| ganglionic eminence | UBERON:0004023 | 88.67 | gold quality |
| body of pancreas | UBERON:0001150 | 88.47 | gold quality |
| apex of heart | UBERON:0002098 | 88.36 | gold quality |
| right atrium auricular region | UBERON:0006631 | 88.18 | gold quality |
| right lobe of liver | UBERON:0001114 | 87.91 | gold quality |
| gastrocnemius | UBERON:0001388 | 87.68 | gold quality |
| cardiac atrium | UBERON:0002081 | 87.64 | gold quality |
| heart left ventricle | UBERON:0002084 | 87.07 | gold quality |
| monocyte | CL:0000576 | 86.90 | gold quality |
| liver | UBERON:0002107 | 86.80 | gold quality |
| leukocyte | CL:0000738 | 86.76 | gold quality |
| muscle of leg | UBERON:0001383 | 86.76 | gold quality |
| adrenal tissue | UBERON:0018303 | 86.71 | gold quality |
| body of stomach | UBERON:0001161 | 86.62 | gold quality |
| pancreas | UBERON:0001264 | 86.61 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 86.55 | gold quality |
| cardiac ventricle | UBERON:0002082 | 86.42 | gold quality |
| heart | UBERON:0000948 | 85.96 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 85.58 | gold quality |
| left adrenal gland | UBERON:0001234 | 85.57 | gold quality |
| right adrenal gland | UBERON:0001233 | 85.33 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 85.07 | gold quality |
| right uterine tube | UBERON:0001302 | 85.06 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 84.84 | gold quality |
| islet of Langerhans | UBERON:0000006 | 84.69 | gold quality |
| myocardium | UBERON:0002349 | 84.69 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.51 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
108 targeting DHRSX, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AK | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AM-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AP-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548AQ-5P | 99.94 | 71.34 | 3426 |
| HSA-MIR-548AR-5P | 99.94 | 71.28 | 3515 |
| HSA-MIR-548AS-5P | 99.94 | 71.22 | 3482 |
| HSA-MIR-548AU-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AY-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548B-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548BB-5P | 99.94 | 71.27 | 3509 |
| HSA-MIR-548C-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548D-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548H-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548I | 99.94 | 71.25 | 3481 |
| HSA-MIR-548J-5P | 99.94 | 71.14 | 3489 |
Literature-anchored findings (GeneRIF, showing 1)
- these results demonstrate that DHRSX is a novel non-classical secretory protein involved in the positive regulation of starvation induced autophagy and provide a new avenue for research on this protein family and autophagy regulation (PMID:25076851)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | si:dkey-23o4.6 | ENSDARG00000034577 |
| danio_rerio | zgc:153441 | ENSDARG00000054797 |
| drosophila_melanogaster | CG2065 | FBGN0033204 |
| caenorhabditis_elegans | WBGENE00000985 |
Paralogs (4): KDSR (ENSG00000119537), RDH13 (ENSG00000160439), DHRS13 (ENSG00000167536), RDH14 (ENSG00000240857)
Protein
Protein identifiers
Polyprenol dehydrogenase — Q8N5I4 (reviewed: Q8N5I4)
Alternative names: DHRSXY, Dehydrogenase/reductase SDR family member on chromosome X, Dolichal reductase
All UniProt accessions (4): Q8N5I4, C9JB06, C9JRH1, H7C5T6
UniProt curated annotations — full annotation on UniProt →
Function. Oxidoreductase that plays a key role in early steps of protein N-linked glycosylation by mediating two non-consecutive steps in dolichol biosynthesis. Acts both as a NAD(+)-dependent dehydrogenase and as a NADPH-dependent reductase during the conversion of polyprenol into dolichol. First catalyzes the NAD(+)-dependent dehydrogenation of polyprenol into polyprenal; polyprenal is then reduced into dolichal by SRD5A3. It then catalyzes the NADPH-dependent reduction of dolichal into dolichol. May also acts as a positive regulator of starvation-induced autophagy.
Subcellular location. Lipid droplet. Secreted.
Tissue specificity. Widely expressed. Highly expressed in the pancreas.
Disease relevance. Congenital disorder of glycosylation 1DD (CDG1DD) [MIM:301133] A form of congenital disorder of glycosylation, a multisystem disorder caused by a defect in glycoprotein biosynthesis and characterized by under-glycosylated serum glycoproteins. Congenital disorders of glycosylation result in a wide variety of clinical features, such as defects in the nervous system development, psychomotor retardation, dysmorphic features, hypotonia, coagulation disorders, and immunodeficiency. The broad spectrum of features reflects the critical role of N-glycoproteins during embryonic development, differentiation, and maintenance of cell functions. CDG1DD transmission pattern is consistent with pseudoautosomal recessive inheritance. The disease is caused by variants affecting the gene represented in this entry.
Pathway. Protein modification; protein glycosylation.
Miscellaneous. The gene coding for this protein is located in the pseudoautosomal region 1 (PAR1) of X and Y chromosomes.
Similarity. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
RefSeq proteins (1): NP_660160* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002347 | SDR_fam | Family |
| IPR020904 | Sc_DH/Rdtase_CS | Conserved_site |
| IPR036291 | NAD(P)-bd_dom_sf | Homologous_superfamily |
Pfam: PF00106
Catalyzed reactions (Rhea), 4 shown:
- a di-trans,poly-cis-polyprenol + NAD(+) = a di-trans,poly-cis-polyprenal + NADH + H(+) (RHEA:80719)
- a di-trans,poly-cis-polyprenol + NADP(+) = a di-trans,poly-cis-polyprenal + NADPH + H(+) (RHEA:80723)
- a di-trans,poly-cis-dolichol + NADP(+) = a di-trans,poly-cis-dolichal + NADPH + H(+) (RHEA:80731)
- a di-trans,poly-cis-dolichol + NAD(+) = a di-trans,poly-cis-dolichal + NADH + H(+) (RHEA:80735)
UniProt features (13 total): sequence variant 6, binding site 4, initiator methionine 1, chain 1, active site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8N5I4-F1 | 94.90 | 0.85 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 208 (proton acceptor)
Ligand- & substrate-binding residues (4): 55; 208; 212; 245
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-446199 | Synthesis of dolichyl-phosphate |
MSigDB gene sets: 169 (showing top):
GOBP_REGULATION_OF_AUTOPHAGY, GOBP_PHOSPHOLIPID_METABOLIC_PROCESS, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_THE_CH_CH_GROUP_OF_DONORS, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_PHOSPHOLIPID_BIOSYNTHETIC_PROCESS, GOBP_REGULATION_OF_CATABOLIC_PROCESS, GOBP_POSITIVE_REGULATION_OF_CATABOLIC_PROCESS, GOBP_LIPID_METABOLIC_PROCESS, GOBP_LIPID_BIOSYNTHETIC_PROCESS, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_CH_OH_GROUP_OF_DONORS, GOBP_POSITIVE_REGULATION_OF_AUTOPHAGY, GOCC_NUCLEAR_OUTER_MEMBRANE_ENDOPLASMIC_RETICULUM_MEMBRANE_NETWORK, SANSOM_APC_MYC_TARGETS, GOCC_ORGANELLE_SUBCOMPARTMENT
GO Biological Process (3): positive regulation of autophagy (GO:0010508), dolichyl monophosphate biosynthetic process (GO:0043048), obsolete dolichol biosynthetic process (GO:0019408)
GO Molecular Function (5): alcohol dehydrogenase (NADP+) activity (GO:0008106), polyprenol dehydrogenase (NAD+) activity (GO:0160196), dolichal reductase (NADPH) activity (GO:0160197), protein binding (GO:0005515), oxidoreductase activity (GO:0016491)
GO Cellular Component (3): extracellular region (GO:0005576), endoplasmic reticulum membrane (GO:0005789), lipid droplet (GO:0005811)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Synthesis of substrates in N-glycan biosythesis | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 2 |
| autophagy | 1 |
| positive regulation of catabolic process | 1 |
| regulation of autophagy | 1 |
| phospholipid biosynthetic process | 1 |
| alcohol dehydrogenase [NAD(P)+] activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cellular anatomical structure | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| intracellular membraneless organelle | 1 |
Protein interactions and networks
STRING
3055 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DHRSX | ASMTL | O95671 | 740 |
| DHRSX | PLCXD1 | Q9NUJ7 | 721 |
| DHRSX | AKAP17A | Q02040 | 692 |
| DHRSX | ZBED1 | O96006 | 667 |
| DHRSX | GTPBP6 | O43824 | 630 |
| DHRSX | PPP2R3B | Q9Y5P8 | 547 |
| DHRSX | SPRY3 | O43610 | 541 |
| DHRSX | SHOX | O15266 | 514 |
| DHRSX | ASMT | P46597 | 509 |
| DHRSX | ERMARD | Q5T6L9 | 507 |
| DHRSX | PNPLA4 | P41247 | 458 |
| DHRSX | SLC25A6 | P12236 | 454 |
| DHRSX | RAB7B | Q96AH8 | 433 |
| DHRSX | PUDP | Q08623 | 427 |
| DHRSX | LRRC72 | A6NJI9 | 420 |
IntAct
57 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| DHRSX | ZBED1 | psi-mi:“MI:0915”(physical association) | 0.590 |
| DHRSX | psi-mi:“MI:0915”(physical association) | 0.560 | |
| AQP6 | DHRSX | psi-mi:“MI:0915”(physical association) | 0.560 |
| DHRSX | CIDEB | psi-mi:“MI:0915”(physical association) | 0.560 |
| DHRSX | HSD17B11 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ASPH | DHRSX | psi-mi:“MI:0915”(physical association) | 0.560 |
| DHRSX | FADS3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PGRMC2 | DHRSX | psi-mi:“MI:0915”(physical association) | 0.560 |
| DHRSX | TMEM14B | psi-mi:“MI:0915”(physical association) | 0.560 |
| DHRSX | RUSF1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RETREG3 | DHRSX | psi-mi:“MI:0915”(physical association) | 0.560 |
| DHRSX | CMTM5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DHRSX | TLCD4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DHRSX | TMEM143 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DHRSX | ZDHHC15 | psi-mi:“MI:0915”(physical association) | 0.560 |
| APOC1 | DHRSX | psi-mi:“MI:0915”(physical association) | 0.560 |
| DHRSX | TMEM86B | psi-mi:“MI:0915”(physical association) | 0.560 |
| PIGP | DHRSX | psi-mi:“MI:0915”(physical association) | 0.560 |
| DHRSX | GCNT3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ATXN1 | DHRSX | psi-mi:“MI:0915”(physical association) | 0.370 |
| DHRSX | psi-mi:“MI:0915”(physical association) | 0.000 | |
| DHRSX | HSD17B11 | psi-mi:“MI:0915”(physical association) | 0.000 |
| ASPH | DHRSX | psi-mi:“MI:0915”(physical association) | 0.000 |
| DHRSX | FADS3 | psi-mi:“MI:0915”(physical association) | 0.000 |
| DHRSX | PGRMC2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| DHRSX | TMEM14B | psi-mi:“MI:0915”(physical association) | 0.000 |
| DHRSX | RUSF1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| DHRSX | RETREG3 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (25): ZBED1 (Affinity Capture-MS), ZBED1 (Affinity Capture-MS), DHRSX (Affinity Capture-RNA), DHRSX (Two-hybrid), DHRSX (Two-hybrid), DHRSX (Two-hybrid), DHRSX (Two-hybrid), DHRSX (Two-hybrid), DHRSX (Two-hybrid), DHRSX (Two-hybrid), DHRSX (Two-hybrid), DHRSX (Two-hybrid), DHRSX (Two-hybrid), DHRSX (Two-hybrid), TMEM31 (Two-hybrid)
ESM2 similar proteins: A0A078IS66, A0A078ISJ6, A0A0B6VQ48, A0A0U5CNP2, A0A1V0QS34, A0A2H3CNT9, A0A2H3CZZ2, A0A2H3D905, A0A3Q8GLE8, A0A3Q8GYY4, A0AAW1NHX6, A2RVM0, A4UHT7, B2X050, B8A5W4, G7IYC1, G7JEE5, O66148, O70503, O74959, P40579, P40580, P59837, Q071N0, Q53GQ0, Q58NB6, Q59987, Q5E9H7, Q5F389, Q5R9W5, Q6P7R8, Q6QA33, Q6RVV4, Q7Q732, Q7SHI2, Q8BYK4, Q8CEE7, Q8N5I4, Q8NBN7, Q8TC12
Diamond homologs: A0A017SEY2, A0A023I4F1, A0A078IS66, A0A078ISJ6, A0A0U1LQE2, A0A0U5CNP2, A0A1B7YCL6, A0A1V0QS34, A0A1V6PAN1, A0A223HDI5, A0A2H3CNT9, A0A2H3D905, A0A443HJZ3, A0A482ND39, A0A823A767, A0PJE2, A2RVM0, A6QP05, B2X050, B6H062, B8A5W4, C8VI80, D7UTD0, G1XTZ5, I1RL15, O32291, O74959, P0DXW2, P16152, P19871, P21218, P35320, P40747, P47727, P50163, P51657, P59837, Q01289, Q03326, Q08651
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
136 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 3 |
| Likely pathogenic | 0 |
| Uncertain significance | 6 |
| Likely benign | 5 |
| Benign | 11 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 144706 | GRCh38/hg38 Xp22.33-22.31(chrX:10679-9459643)x1 | Pathogenic |
| 3376532 | NM_145177.3(DHRSX):c.541G>T (p.Val181Phe) | Pathogenic |
| 58023 | GRCh38/hg38 Yp11.2(chrY:2210832-2525377)x0 | Pathogenic |
SpliceAI
2796 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| X:2243017:GCTTA:G | donor_loss | 1.0000 |
| X:2243018:CTTA:C | donor_loss | 1.0000 |
| X:2243019:TTA:T | donor_loss | 1.0000 |
| X:2243020:TACC:T | donor_loss | 1.0000 |
| X:2243021:A:AC | donor_gain | 1.0000 |
| X:2243022:C:A | donor_loss | 1.0000 |
| X:2243022:C:CC | donor_gain | 1.0000 |
| X:2243226:AGGCA:A | acceptor_gain | 1.0000 |
| X:2243227:GGCA:G | acceptor_gain | 1.0000 |
| X:2243228:GCA:G | acceptor_gain | 1.0000 |
| X:2243229:CA:C | acceptor_gain | 1.0000 |
| X:2243229:CAC:C | acceptor_gain | 1.0000 |
| X:2243230:ACT:A | acceptor_loss | 1.0000 |
| X:2243231:C:CC | acceptor_gain | 1.0000 |
| X:2243231:CT:C | acceptor_loss | 1.0000 |
| X:2243232:T:C | acceptor_loss | 1.0000 |
| X:2266736:CTA:C | donor_loss | 1.0000 |
| X:2266737:TAC:T | donor_loss | 1.0000 |
| X:2266739:CCTG:C | donor_gain | 1.0000 |
| X:2266943:CCCAG:C | acceptor_gain | 1.0000 |
| X:2266944:CCAG:C | acceptor_gain | 1.0000 |
| X:2266944:CCAGC:C | acceptor_gain | 1.0000 |
| X:2266945:CAG:C | acceptor_gain | 1.0000 |
| X:2266945:CAGC:C | acceptor_gain | 1.0000 |
| X:2266946:AGC:A | acceptor_loss | 1.0000 |
| X:2266947:GCTG:G | acceptor_loss | 1.0000 |
| X:2266948:C:CC | acceptor_gain | 1.0000 |
| X:2291495:GACTC:G | donor_loss | 1.0000 |
| X:2291496:ACT:A | donor_loss | 1.0000 |
| X:2291497:CTC:C | donor_loss | 1.0000 |
AlphaMissense
4274 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| Y:2221077:A:C | S319R | 0.992 |
| Y:2221077:A:T | S319R | 0.992 |
| Y:2221079:T:G | S319R | 0.992 |
| Y:2266868:G:C | F156L | 0.983 |
| Y:2266868:G:T | F156L | 0.983 |
| Y:2266870:A:G | F156L | 0.983 |
| Y:2243194:G:C | S211R | 0.982 |
| Y:2243194:G:T | S211R | 0.982 |
| Y:2243196:T:G | S211R | 0.982 |
| Y:2243195:C:A | S211I | 0.981 |
| Y:2425274:A:T | I47K | 0.981 |
| Y:2266800:A:T | V179D | 0.977 |
| Y:2425277:G:T | A46D | 0.975 |
| Y:2243162:A:G | L222P | 0.972 |
| Y:2243191:C:A | K212N | 0.971 |
| Y:2243191:C:G | K212N | 0.971 |
| Y:2221192:G:T | A281E | 0.970 |
| Y:2243192:T:G | K212T | 0.970 |
| Y:2221193:C:G | A281P | 0.968 |
| Y:2243192:T:A | K212M | 0.968 |
| Y:2425205:A:T | V70D | 0.968 |
| Y:2243023:C:A | K268N | 0.967 |
| Y:2243023:C:G | K268N | 0.967 |
| Y:2425271:A:T | V48E | 0.966 |
| Y:2266876:C:A | G154W | 0.963 |
| Y:2291506:G:C | N128K | 0.963 |
| Y:2291506:G:T | N128K | 0.963 |
| Y:2291596:A:C | F98L | 0.963 |
| Y:2291596:A:T | F98L | 0.963 |
| Y:2291598:A:G | F98L | 0.963 |
dbSNP variants (sampled 300 via entrez): RS1000002895 (X:2369991 T>C), RS1000012343 (X:2388320 A>G), RS1000032695 (X:2429343 T>C), RS1000048346 (X:2342234 G>A), RS1000065975 (X:2220152 TC>T), RS1000079131 (X:2387966 G>A), RS1000101125 (X:2235844 T>G), RS1000105442 (X:2342559 C>A,T), RS1000112800 (X:2418229 A>G), RS1000128663 (X:2256060 T>C), RS1000137561 (X:2355146 C>G), RS1000141877 (X:2316126 T>A,C), RS1000171547 (X:2486377 G>A), RS1000215340 (X:2336295 A>C), RS1000216073 (X:2299792 T>C,G)
Disease associations
OMIM: gene MIM:301034 | disease phenotypes: MIM:301133
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| congenital disorder of glycosylation, type 1DD | Strong | Autosomal recessive |
Mondo (1): congenital disorder of glycosylation, type 1DD (MONDO:0975846)
Orphanet (0):
HPO phenotypes
31 total (30 of 31 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000964 | Eczematoid dermatitis |
| HP:0000998 | Hypertrichosis |
| HP:0001250 | Seizure |
| HP:0001396 | Cholestasis |
| HP:0001508 | Failure to thrive |
| HP:0001643 | Patent ductus arteriosus |
| HP:0001744 | Splenomegaly |
| HP:0001999 | Abnormal facial shape |
| HP:0002020 | Gastroesophageal reflux |
| HP:0002093 | Respiratory insufficiency |
| HP:0002104 | Apnea |
| HP:0002187 | Profound intellectual disability |
| HP:0002240 | Hepatomegaly |
| HP:0002650 | Scoliosis |
| HP:0002870 | Obstructive sleep apnea |
| HP:0003593 | Infantile onset |
| HP:0003642 | Type I transferrin isoform profile |
| HP:0008064 | Ichthyosis |
| HP:0008936 | Axial hypotonia |
| HP:0010307 | Stridor |
| HP:0011344 | Severe global developmental delay |
| HP:0011393 | Aplasia of the vestibular nerve |
| HP:0011471 | Gastrostomy tube feeding in infancy |
| HP:0033725 | Thin corpus callosum |
| HP:0034341 | Pseudoautosomal recessive inheritance |
| HP:0034391 | Elbow contracture |
| HP:0034671 | Knee contracture |
| HP:0034782 | Obstipation |
| HP:0200020 | Corneal erosion |
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
20 total (human), top 20 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression | 6 |
| Benzo(a)pyrene | decreases expression | 4 |
| Aflatoxin B1 | decreases expression | 2 |
| methylmercuric chloride | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | increases expression | 1 |
| trichostatin A | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Air Pollutants | increases abundance, affects expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Ozone | increases abundance, affects expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | decreases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
Cellosaurus cell lines
2 cell lines: 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E1VM | HAP1 DHRSX (-) 1 | Cancer cell line | Male |
| CVCL_E1VN | HAP1 DHRSX (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: congenital disorder of glycosylation, type 1DD
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital disorder of glycosylation, type 1DD