DIAPH1
geneOn this page
Also known as hDIA1LFHL1mDia1
Summary
DIAPH1 (diaphanous related formin 1, HGNC:2876) is a protein-coding gene on chromosome 5q31.3, encoding Protein diaphanous homolog 1 (O60610). Actin nucleation and elongation factor required for the assembly of F-actin structures, such as actin cables and stress fibers.
This gene is a homolog of the Drosophila diaphanous gene, and has been linked to autosomal dominant, fully penetrant, nonsyndromic sensorineural progressive low-frequency hearing loss. Actin polymerization involves proteins known to interact with diaphanous protein in Drosophila and mouse. It has therefore been speculated that this gene may have a role in the regulation of actin polymerization in hair cells of the inner ear. Alternatively spliced transcript variants encoding distinct isoforms have been found for this gene.
Source: NCBI Gene 1729 — RefSeq curated summary.
At a glance
- Gene–disease (curated): progressive microcephaly-seizures-cortical blindness-developmental delay syndrome (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 7
- Clinical variants (ClinVar): 1,897 total — 36 pathogenic, 25 likely-pathogenic
- Phenotypes (HPO): 47
- Druggable target: yes
- MANE Select transcript:
NM_005219
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2876 |
| Approved symbol | DIAPH1 |
| Name | diaphanous related formin 1 |
| Location | 5q31.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | hDIA1, LFHL1, mDia1 |
| Ensembl gene | ENSG00000131504 |
| Ensembl biotype | protein_coding |
| OMIM | 602121 |
| Entrez | 1729 |
Gene structure
Transcript identifiers
Ensembl transcripts: 15 — 6 protein_coding, 4 protein_coding_CDS_not_defined, 3 retained_intron, 2 nonsense_mediated_decay
ENST00000389054, ENST00000448451, ENST00000468119, ENST00000472516, ENST00000476339, ENST00000491754, ENST00000494967, ENST00000518047, ENST00000518484, ENST00000523100, ENST00000524301, ENST00000643312, ENST00000643718, ENST00000647330, ENST00000647433
RefSeq mRNA: 3 — MANE Select: NM_005219
NM_001079812, NM_001314007, NM_005219
CCDS: CCDS43373, CCDS43374, CCDS87331
Canonical transcript exons
ENST00000389054 — 28 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001504786 | 141571926 | 141572040 |
| ENSE00002433803 | 141583485 | 141583615 |
| ENSE00002447549 | 141583206 | 141583292 |
| ENSE00002453535 | 141577475 | 141577591 |
| ENSE00002467863 | 141584124 | 141584225 |
| ENSE00002468421 | 141582312 | 141582375 |
| ENSE00002474822 | 141574967 | 141575146 |
| ENSE00002484253 | 141576756 | 141576871 |
| ENSE00002486835 | 141573492 | 141574208 |
| ENSE00002505979 | 141580744 | 141580883 |
| ENSE00002524976 | 141576230 | 141576294 |
| ENSE00003460486 | 141578515 | 141578625 |
| ENSE00003463207 | 141578225 | 141578343 |
| ENSE00003478221 | 141579088 | 141579196 |
| ENSE00003489171 | 141528453 | 141528582 |
| ENSE00003491307 | 141528702 | 141528941 |
| ENSE00003517610 | 141515021 | 141517008 |
| ENSE00003541262 | 141526038 | 141526173 |
| ENSE00003548898 | 141587042 | 141587197 |
| ENSE00003584222 | 141527573 | 141527697 |
| ENSE00003593301 | 141534335 | 141534433 |
| ENSE00003598560 | 141524143 | 141524229 |
| ENSE00003605990 | 141529603 | 141529697 |
| ENSE00003677015 | 141526297 | 141526461 |
| ENSE00003690253 | 141529172 | 141529273 |
| ENSE00003723728 | 141588224 | 141588250 |
| ENSE00003769475 | 141571428 | 141571436 |
| ENSE00003847922 | 141618798 | 141619000 |
Expression profiles
Bgee: expression breadth ubiquitous, 291 present calls, max score 98.43.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 37.4788 / max 1070.9863, expressed in 1817 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 63852 | 29.6259 | 1812 |
| 63853 | 3.7285 | 1455 |
| 63850 | 1.9398 | 1126 |
| 63854 | 1.1095 | 700 |
| 63851 | 0.6310 | 405 |
| 63845 | 0.2055 | 76 |
| 63855 | 0.1643 | 57 |
| 63843 | 0.0744 | 33 |
Top tissues by expression
294 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| granulocyte | CL:0000094 | 98.43 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 97.96 | gold quality |
| leukocyte | CL:0000738 | 97.38 | gold quality |
| monocyte | CL:0000576 | 97.31 | gold quality |
| mononuclear cell | CL:0000842 | 97.27 | gold quality |
| calcaneal tendon | UBERON:0003701 | 97.14 | gold quality |
| right lobe of liver | UBERON:0001114 | 97.12 | gold quality |
| gastrocnemius | UBERON:0001388 | 97.09 | gold quality |
| muscle of leg | UBERON:0001383 | 96.60 | gold quality |
| esophagus mucosa | UBERON:0002469 | 96.25 | gold quality |
| skin of leg | UBERON:0001511 | 96.05 | gold quality |
| right lung | UBERON:0002167 | 96.03 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 95.96 | gold quality |
| blood | UBERON:0000178 | 95.90 | gold quality |
| amniotic fluid | UBERON:0000173 | 95.83 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 95.40 | gold quality |
| upper lobe of lung | UBERON:0008948 | 95.38 | gold quality |
| islet of Langerhans | UBERON:0000006 | 95.32 | gold quality |
| body of pancreas | UBERON:0001150 | 95.32 | gold quality |
| skin of abdomen | UBERON:0001416 | 95.31 | gold quality |
| tendon | UBERON:0000043 | 95.07 | gold quality |
| liver | UBERON:0002107 | 94.97 | gold quality |
| tonsil | UBERON:0002372 | 94.96 | gold quality |
| lymph node | UBERON:0000029 | 94.94 | gold quality |
| pancreas | UBERON:0001264 | 94.93 | gold quality |
| metanephros cortex | UBERON:0010533 | 94.79 | gold quality |
| gingival epithelium | UBERON:0001949 | 94.76 | gold quality |
| apex of heart | UBERON:0002098 | 94.66 | gold quality |
| colonic epithelium | UBERON:0000397 | 94.65 | gold quality |
| bone marrow cell | CL:0002092 | 94.64 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MITF, TBXT
miRNA regulators (miRDB)
100 targeting DIAPH1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-MIR-4645-5P | 99.98 | 65.81 | 1284 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-450B-5P | 99.92 | 71.48 | 3175 |
| HSA-MIR-4753-3P | 99.90 | 71.03 | 3786 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-3919 | 99.87 | 69.45 | 2489 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-221-5P | 99.86 | 65.45 | 1052 |
| HSA-MIR-8073 | 99.86 | 65.21 | 1118 |
| HSA-MIR-4779 | 99.86 | 66.50 | 1583 |
| HSA-MIR-6817-3P | 99.79 | 68.35 | 2126 |
| HSA-MIR-548AJ-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548F-5P | 99.78 | 71.02 | 3093 |
| HSA-MIR-548G-5P | 99.78 | 71.12 | 3085 |
Literature-anchored findings (GeneRIF, showing 40)
- ROCK and Dia have opposing effects on adherens junctions downstream of Rho. (PMID:11992112)
- mDia influences Pax6-induced transcriptional activity and axonal pathfinding in a way opposite from ROCK (Rho kinase) and that it may act via Pax6 to modulate early neuronal development (PMID:12324464)
- pertains to studies in mouse (PMID:12324464)
- mDia is present in very small amounts in freshly isolated peripheral blood lymphocytes, is induced in vivo and in vitro during T cell activation, and is involved in regulating the F-actin/G-actin balance critical for T cell motility. (PMID:12847276)
- RhoA, mDia, and ROCK have roles in cell shape-dependent control of the Skp2-p27kip1 pathway and the G1/S transition (PMID:15096506)
- Results show that mDia1 and PKD2 interact in native and in transfected cells, and binding is mediated by the cytoplasmic C terminus of PKD2 binding to the mDia1 N terminus. (PMID:15123714)
- findings show that in melanomas invasiveness can be regulated epigenetically by the microphthalmia-associated transcription factor, Mitf, by regulation of the DIAPH1 gene; Mitf, via regulation of Dia1, can both inhibit invasiveness & promote proliferation (PMID:17182868)
- Increases in GTP-bound RHOA and DIAPH1 expression may contribute to the increase in uterine activity in idiopathic preterm labor. (PMID:17301291)
- Data suggest that Dia1 localizes to and controls E-cadherin-mediated junctions in a RhoA-dependent manner. (PMID:17940061)
- Angiopoietin 1 promotes the activation of mDia through RhoA, resulting in the association of mDia with Src. [mD1a] (PMID:18194650)
- mDia1 and Daam1 are platelet actin assembly factors having distinct efficiencies, and they are directly regulated by Rho GTPases (PMID:18218625)
- the interaction of the RAGE cytoplasmic domain with Dia-1 is required to transduce extracellular environmental cues evoked by binding of RAGE ligands to their cell surface receptor, resulting in Rac-1 and Cdc42 activation and cellular migration (PMID:18922799)
- Memo-RhoA-mDia1 signaling coordinates the organization of the lamellipodial actin network, adhesion site formation, and microtubule outgrowth within the cell leading edge to sustain cell motility. (PMID:18955552)
- Flies with mutations affecting the diaphanous,forked, and CG12026/TMHS genes displayed significant reductions in the amplitude of sound-evoked potentials compared to wild-type flies (PMID:19102128)
- These findings uncover a novel link between cadherin-mediated adhesion and the regulation of actin dynamics through the requirement for an Abi/Dia complex for the formation and stability of cell-cell junctions. (PMID:19158278)
- Rho mediates various phenotypes of malignant transformation by Ras and Src through its effectors, ROCK and mDia [review] (PMID:19160018)
- mDia1 was shown to translocate to the platelet cytoskeleton following thrombin stimulation, in a phosphoinositide 3-kinase (PI 3-kinase)-dependent manner. (PMID:19470376)
- loss of hDia1 did not disrupt actin assembly at the lytic synapse. Instead, loss of hDia1 led to perturbations in the microtubule cytoskeleton, including the targeting of microtubules to the lytic synapse (PMID:19913427)
- PI3-kinase regulates the thrombin-induced actin cytoskeleton reconstitution in platelets by the RhoA-mDia1 pathway. (PMID:20030946)
- mDia plays an important role in the development of force-induced transcriptional activation of SMA and myofibroblast differentiation (PMID:20071339)
- Fli-I promotes the GTP-bound active Rho-mediated relief of the autoinhibition of Daam1 and mDia1. Thus, Fli-I is a novel positive regulator of Rho-induced linear actin assembly mediated by DRFs. (PMID:20223827)
- Data show that expression of a dominant-negative RhoA mutant or silencing DIAPH1 impaired mitochondrial trafficking and cortisol biosynthesis. (PMID:20591975)
- mDia1 regulates Golgi architecture and dynamics in a Rho-dependent manner (PMID:21680709)
- mDia1 and WAVE2 are important Src homology 3 domain partners of IRSp53 in forming filopodia. (PMID:22179776)
- a novel mechanism through which an extracellular signal initiated by RAGE ligands regulates RAGE signaling in a manner requiring mDia1. (PMID:22194616)
- Liprin-alpha negatively regulates the activity of mDia in the cell by displacing it from the plasma membrane through binding to the N-terminal Dia-inhibitory domain (DID) and dimerization domain (DD) of mDia (PMID:22266902)
- mDia1 knockdown results in Cav1/caveolae clustering and defective inward trafficking upon loss of cell adhesion. (PMID:22454521)
- findings show that DIAPH1 interacts with multiple proteins in H295R human adrenocortical cells and that cAMP signaling modulates the interaction of a subset of proteins with DIAPH1 (PMID:23325789)
- Depletion of DIAPH1 reduced metastasis 60-fold. (PMID:24105619)
- Recruitment of Syx to the cell membrane, the selective activation of Dia1 signaling, coupled with the suppression of ROCK and actin reorganization, plays a key role in establishing cell polarity during directed cell migration. (PMID:24126053)
- The results revealed that treatment with siRNA-mDRF1 significantly inhibited tumor growth and led to a decrease in the weight of the transplanted tumor. In conclusion, our data demonstrate that mDRF1 is highly expressed in human glioma tissue. (PMID:24317603)
- Dia1, Dia2, and Dia3 are involved in ErbB2-dependent capture of microtubules at the cell leading edge and ErbB2-driven guided migration. (PMID:24403606)
- Patients with a homozygous nonsense DIAPH1 alteration (p.Gln778*) have MCP as well as reduced height and weight. (PMID:24781755)
- Mechanistically, mDia1 deficiency led to a downregulation of membrane-associated genes and a specific upregulation of CD14 messenger RNA in granulocytes, but not in other lineages. (PMID:24891322)
- the RhoA-regulated formin Dia1 is involved in entosis downstream of LPAR2 (PMID:24950964)
- DIAPH1 has a critical role in generating F-actin structures and assisting the microtubule stabilization underlying proplatelet formation and platelet production (PMID:25298036)
- Data indicate that diaphanous homolog 1 (Drosophila) protein (DIAPH1) stabilizes microtubules and reduces microtubule dynamics. (PMID:26124177)
- The Rho-mDia1 signaling pathway is involved in the cytoskeletal rearrangement of human periodontal ligament cells induced by cyclic strain. (PMID:26201082)
- functional complementation experiments and optogenetics to show that mDia1 cooperates with the Arp2/3 complex in initiating lamellipodia and ruffles. (PMID:26349808)
- Loss-of-function variants in DIAPH1 is associated with syndromic microcephaly, blindness, and early onset seizures. (PMID:26463574)
Cross-species orthologs
9 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ENSDARG00000115082 | |
| mus_musculus | Diaph1 | ENSMUSG00000024456 |
| rattus_norvegicus | Diaph1 | ENSRNOG00000019688 |
| drosophila_melanogaster | Frl | FBGN0267795 |
| caenorhabditis_elegans | fhod-1 | WBGENE00016735 |
| caenorhabditis_elegans | WBGENE00018976 | |
| caenorhabditis_elegans | WBGENE00019030 | |
| caenorhabditis_elegans | sydn-1 | WBGENE00021473 |
| caenorhabditis_elegans | WBGENE00021698 |
Paralogs (18): DAAM1 (ENSG00000100592), FNBP4 (ENSG00000109920), FHOD3 (ENSG00000134775), FHOD1 (ENSG00000135723), FHDC1 (ENSG00000137460), DIAPH3 (ENSG00000139734), DAAM2 (ENSG00000146122), DIAPH2 (ENSG00000147202), FMN2 (ENSG00000155816), FMNL2 (ENSG00000157827), FMNL3 (ENSG00000161791), FMNL1 (ENSG00000184922), FAM47A (ENSG00000185448), SHTN1 (ENSG00000187164), FAM47B (ENSG00000189132), FAM47C (ENSG00000198173), INF2 (ENSG00000203485), GRID2IP (ENSG00000215045)
Protein
Protein identifiers
Protein diaphanous homolog 1 — O60610 (reviewed: O60610)
Alternative names: Diaphanous-related formin-1
All UniProt accessions (5): A0A2R8Y5N1, A0A2R8YEF8, B4E2I7, H7C2W8, O60610
UniProt curated annotations — full annotation on UniProt →
Function. Actin nucleation and elongation factor required for the assembly of F-actin structures, such as actin cables and stress fibers. Binds to the barbed end of the actin filament and slows down actin polymerization and depolymerization. Required for cytokinesis, and transcriptional activation of the serum response factor. DFR proteins couple Rho and Src tyrosine kinase during signaling and the regulation of actin dynamics. Functions as a scaffold protein for MAPRE1 and APC to stabilize microtubules and promote cell migration. Has neurite outgrowth promoting activity. Acts in a Rho-dependent manner to recruit PFY1 to the membrane. In hear cells, it may play a role in the regulation of actin polymerization in hair cells. The MEMO1-RHOA-DIAPH1 signaling pathway plays an important role in ERBB2-dependent stabilization of microtubules at the cell cortex. It controls the localization of APC and CLASP2 to the cell membrane, via the regulation of GSK3B activity. In turn, membrane-bound APC allows the localization of the MACF1 to the cell membrane, which is required for microtubule capture and stabilization. Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Plays a role in brain development. Also acts as an actin nucleation and elongation factor in the nucleus by promoting nuclear actin polymerization inside the nucleus to drive serum-dependent SRF-MRTFA activity.
Subunit / interactions. Homodimer. Interacts with the GTP-bound form of RHOA. Interacts with RHOC, PFY1, MAPRE1 and BAIAP2. Interacts with APC; acts as a scaffold protein for MAPRE1 and APC to stabilize microtubules and promote cell migration. Interacts with SCAI. Interacts with DCAF7, via FH2 domain. Interacts with NCDN. Interacts with OSBPL10, OSBPL2, VIM, TUBB and DYN1.
Subcellular location. Cell membrane. Cell projection. Ruffle membrane. Cytoplasm. Cytoskeleton. Microtubule organizing center. Centrosome. Spindle. Nucleus.
Tissue specificity. Expressed in brain, heart, placenta, lung, kidney, pancreas, liver, skeletal muscle and cochlea. Expressed in platelets.
Post-translational modifications. Phosphorylation at Thr-768 is stimulated by cAMP and regulates stability, complex formation and mitochondrial movement.
Disease relevance. Deafness, autosomal dominant 1, with or without thrombocytopenia (DFNA1) [MIM:124900] A form of non-syndromic sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. Patients may have mild thrombocytopenia and enlarged platelets, although most of DFNA1 affected individuals do not have significant bleeding tendencies. The disease is caused by variants affecting the gene represented in this entry. Seizures, cortical blindness, and microcephaly syndrome (SCBMS) [MIM:616632] A severe autosomal recessive neurodevelopmental disorder characterized by microcephaly, early-onset seizures, severely delayed psychomotor development, short stature, and cortical blindness. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The DAD domain regulates activation via by an autoinhibitory interaction with the GBD/FH3 domain. This autoinhibition is released upon competitive binding of an activated GTPase. The release of DAD allows the FH2 domain to then nucleate and elongate nonbranched actin filaments.
Similarity. Belongs to the formin homology family. Diaphanous subfamily.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O60610-1 | 1 | yes |
| O60610-2 | 2 | |
| O60610-3 | 3 |
RefSeq proteins (3): NP_001073280, NP_001300936, NP_005210* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR010465 | Drf_DAD | Domain |
| IPR010472 | FH3_dom | Domain |
| IPR010473 | GTPase-bd | Domain |
| IPR011989 | ARM-like | Homologous_superfamily |
| IPR014767 | DAD_dom | Domain |
| IPR014768 | GBD/FH3_dom | Domain |
| IPR015425 | FH2_Formin | Domain |
| IPR016024 | ARM-type_fold | Homologous_superfamily |
| IPR042201 | FH2_Formin_sf | Homologous_superfamily |
| IPR044933 | DIA_GBD_sf | Homologous_superfamily |
| IPR051412 | Formin_Homology_Diaphanous_sf | Family |
Pfam: PF02181, PF06345, PF06346, PF06367, PF06371
UniProt features (58 total): helix 16, modified residue 10, compositionally biased region 8, domain 4, mutagenesis site 4, sequence conflict 4, splice variant 3, sequence variant 2, turn 2, region of interest 2, coiled-coil region 2, chain 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8FG1 | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O60610-F1 | 74.04 | 0.33 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (10): 1, 7, 22, 36, 768, 1057, 1103, 1121, 1251, 1254
Mutagenesis-validated functional residues (4):
| Position | Phenotype |
|---|---|
| 154 | partial decrease of phosphorylation. |
| 768 | substantial loss of phosphorylation, no increase of phosphorylation in response to camp, increased stability, reduced in |
| 1091 | substantial loss of phosphorylation. |
| 1238 | substantial loss of phosphorylation. |
Function
Pathways and Gene Ontology
Reactome pathways
9 pathways
| ID | Pathway |
|---|---|
| R-HSA-5663220 | RHO GTPases Activate Formins |
| R-HSA-6785631 | ERBB2 Regulates Cell Motility |
| R-HSA-6798695 | Neutrophil degranulation |
| R-HSA-8980692 | RHOA GTPase cycle |
| R-HSA-9013026 | RHOB GTPase cycle |
| R-HSA-9013106 | RHOC GTPase cycle |
| R-HSA-9013405 | RHOD GTPase cycle |
| R-HSA-9035034 | RHOF GTPase cycle |
| R-HSA-9854909 | Regulation of MITF-M dependent genes involved in invasion |
MSigDB gene sets: 461 (showing top):
BIOCARTA_RHO_PATHWAY, RNGTGGGC_UNKNOWN, AGGAAGC_MIR5163P, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_PROTEIN_LOCALIZATION_TO_CYTOSKELETON, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_REGULATION_OF_CELL_MORPHOGENESIS, GOBP_REGULATION_OF_MICROTUBULE_BASED_PROCESS, BIOCARTA_MAL_PATHWAY, GOBP_SENSORY_PERCEPTION_OF_MECHANICAL_STIMULUS, GOCC_SECRETORY_GRANULE, MORF_SNRP70, MORF_HDAC1, ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_DN, AREB6_01
GO Biological Process (11): cytoskeleton organization (GO:0007010), sensory perception of sound (GO:0007605), regulation of cell shape (GO:0008360), actin cytoskeleton organization (GO:0030036), actin filament polymerization (GO:0030041), regulation of microtubule-based process (GO:0032886), protein localization to microtubule (GO:0035372), regulation of release of sequestered calcium ion into cytosol (GO:0051279), regulation of cytoskeleton organization (GO:0051493), cellular response to histamine (GO:0071420), cellular component organization (GO:0016043)
GO Molecular Function (6): RNA binding (GO:0003723), actin binding (GO:0003779), signaling receptor binding (GO:0005102), small GTPase binding (GO:0031267), transmembrane transporter binding (GO:0044325), protein binding (GO:0005515)
GO Cellular Component (14): nucleus (GO:0005634), cytoplasm (GO:0005737), centrosome (GO:0005813), cytosol (GO:0005829), actin filament (GO:0005884), plasma membrane (GO:0005886), secretory granule membrane (GO:0030667), ruffle membrane (GO:0032587), mitotic spindle (GO:0072686), ficolin-1-rich granule membrane (GO:0101003), spindle (GO:0005819), cytoskeleton (GO:0005856), membrane (GO:0016020), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| RHO GTPase cycle | 5 |
| RHO GTPase Effectors | 1 |
| Signaling by ERBB2 | 1 |
| Innate Immune System | 1 |
| MITF-M-dependent gene expression | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| cytoskeleton organization | 2 |
| protein binding | 2 |
| intracellular membraneless organelle | 2 |
| organelle organization | 1 |
| sensory perception of mechanical stimulus | 1 |
| regulation of cell morphogenesis | 1 |
| regulation of biological quality | 1 |
| actin filament-based process | 1 |
| actin polymerization or depolymerization | 1 |
| protein polymerization | 1 |
| microtubule-based process | 1 |
| regulation of cellular process | 1 |
| protein localization to microtubule cytoskeleton | 1 |
| release of sequestered calcium ion into cytosol | 1 |
| regulation of calcium ion transmembrane transport | 1 |
| regulation of organelle organization | 1 |
| response to histamine | 1 |
| cellular response to nitrogen compound | 1 |
| cellular component organization or biogenesis | 1 |
| nucleic acid binding | 1 |
| cytoskeletal protein binding | 1 |
| GTPase binding | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| centriole | 1 |
| microtubule organizing center | 1 |
| cytoplasm | 1 |
| actin cytoskeleton | 1 |
| polymeric cytoskeletal fiber | 1 |
| membrane | 1 |
| cell periphery | 1 |
| secretory granule | 1 |
| cytoplasmic vesicle membrane | 1 |
| bounding membrane of organelle | 1 |
| ruffle | 1 |
| cell projection membrane | 1 |
| leading edge membrane | 1 |
| spindle | 1 |
Protein interactions and networks
STRING
2037 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DIAPH1 | SAV1 | Q9H4B6 | 862 |
| DIAPH1 | RHOC | P08134 | 845 |
| DIAPH1 | RHOA | P06749 | 828 |
| DIAPH1 | EIF3M | Q7L2H7 | 767 |
| DIAPH1 | GFER | P55789 | 747 |
| DIAPH1 | WFS1 | O76024 | 730 |
| DIAPH1 | PFN4 | Q8NHR9 | 714 |
| DIAPH1 | RHOD | O00212 | 705 |
| DIAPH1 | POU4F3 | Q15319 | 674 |
| DIAPH1 | PCSK9 | Q8NBP7 | 668 |
| DIAPH1 | PFN1 | P07737 | 656 |
| DIAPH1 | PFN3 | P60673 | 654 |
| DIAPH1 | LIMK1 | P53667 | 652 |
| DIAPH1 | AGER | Q15109 | 641 |
| DIAPH1 | WAS | P42768 | 628 |
IntAct
84 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| DCAF7 | DIAPH1 | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| RHOD | PLXNB2 | psi-mi:“MI:0914”(association) | 0.640 |
| RHOA | DIAPH1 | psi-mi:“MI:0914”(association) | 0.600 |
| RHOA | DIAPH1 | psi-mi:“MI:0407”(direct interaction) | 0.600 |
| DIAPH1 | RHOA | psi-mi:“MI:0407”(direct interaction) | 0.600 |
| RHOC | DIAPH1 | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| RHOD | DIAPH1 | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| AGER | DIAPH1 | psi-mi:“MI:0915”(physical association) | 0.580 |
| DCAF7 | PFDN6 | psi-mi:“MI:0914”(association) | 0.570 |
| ORF | EIF3D | psi-mi:“MI:0914”(association) | 0.560 |
| DIAPH1 | PPM1F | psi-mi:“MI:0915”(physical association) | 0.540 |
| DIAPH1 | PPM1F | psi-mi:“MI:0407”(direct interaction) | 0.540 |
| GRB2 | SH3PXD2B | psi-mi:“MI:0914”(association) | 0.530 |
| RHOC | ARHGEF11 | psi-mi:“MI:0914”(association) | 0.530 |
| DIAPH1 | PKD2 | psi-mi:“MI:0403”(colocalization) | 0.530 |
| PKD2 | DIAPH1 | psi-mi:“MI:0915”(physical association) | 0.530 |
| ORF | DIAPH1 | psi-mi:“MI:0915”(physical association) | 0.500 |
| CFTR | CNOT1 | psi-mi:“MI:0914”(association) | 0.480 |
| DIAPH1 | DIAPH1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| DIAPH1 | RHOB | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| DIAPH1 | RHOF | psi-mi:“MI:0407”(direct interaction) | 0.440 |
BioGRID (195): DIAPH1 (Affinity Capture-MS), DIAPH1 (Affinity Capture-MS), DIAPH1 (Affinity Capture-MS), DIAPH1 (Co-fractionation), DIAPH1 (Co-fractionation), MTOR (Co-fractionation), TLN2 (Co-fractionation), TTC4 (Co-fractionation), UBL7 (Co-fractionation), DIAPH1 (Affinity Capture-MS), DIAPH1 (Affinity Capture-MS), LRP1 (Affinity Capture-MS), PLXNB1 (Affinity Capture-MS), PABPN1 (Affinity Capture-MS), SLC16A3 (Affinity Capture-MS)
ESM2 similar proteins: A0A1D5P556, A0A3Q1LSX9, A2A5R2, A2APV2, B0DOB5, B2RQE8, D3ZYR1, D4A631, F1LVW7, F1M775, F4IUX6, G3X9K3, O08808, O46382, O60308, O60610, O75674, O95466, Q07139, Q0IHV1, Q0JRZ9, Q3UQN2, Q4S6U8, Q5MIZ7, Q5R807, Q5SP90, Q6DFT3, Q6IN85, Q6INN7, Q6NTV6, Q6NXC0, Q6P2K6, Q6ZPF4, Q7TSU1, Q7ZX60, Q801Q7, Q80U19, Q86T65, Q8BPM0, Q8IVF7
Diamond homologs: A0A1D5P556, A4D2P6, B0DOB5, O08808, O23373, O60610, O70566, Q6MWG9, Q80U19, Q86T65, Q8BPM0, Q9FJX6, Q9Y4D1, A3AB67, F1LVW7, F1M775, O60879, P48608, Q0D519, Q0D5P3, Q10Q99, Q6H7U3, Q8H8K7, Q8S0F0, Q9MA60, Q9NSV4, Q9Z207, O04532, Q10059, Q27J81, Q54N00, Q54WH2, Q69MT2, Q9XIE0, A2XUA1, A2YVG8, O22824, O48682, P0C5K5, Q0DLG0
SIGNOR signaling
6 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| RHOA | “up-regulates activity” | DIAPH1 | |
| DIAPH1 | “up-regulates activity” | CDH4 | |
| ERK1/2 | “up-regulates quantity by stabilization” | DIAPH1 | phosphorylation |
| PKA | “up-regulates quantity by stabilization” | DIAPH1 | phosphorylation |
| CHEK1 | “down-regulates activity” | DIAPH1 | phosphorylation |
| CDK1 | “down-regulates activity” | DIAPH1 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 75 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| RHO GTPases Activate Formins | 7 | 9.7× | 1e-03 |
| mRNA Splicing - Major Pathway | 7 | 6.8× | 8e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| Rho protein signal transduction | 6 | 23.2× | 8e-05 |
| regulation of actin cytoskeleton organization | 7 | 17.2× | 8e-05 |
| mRNA splicing, via spliceosome | 7 | 10.0× | 1e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1897 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 36 |
| Likely pathogenic | 25 |
| Uncertain significance | 974 |
| Likely benign | 704 |
| Benign | 46 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1027661 | NM_005219.5(DIAPH1):c.3490C>T (p.Arg1164Ter) | Pathogenic |
| 1070912 | NM_005219.5(DIAPH1):c.108dup (p.Lys37Ter) | Pathogenic |
| 1076722 | NM_005219.5(DIAPH1):c.3022C>T (p.Arg1008Ter) | Pathogenic |
| 1356050 | NM_005219.5(DIAPH1):c.3166C>T (p.Gln1056Ter) | Pathogenic |
| 1360681 | NM_005219.5(DIAPH1):c.2100dup (p.Pro701fs) | Pathogenic |
| 1395984 | NM_005219.5(DIAPH1):c.2108dup (p.Pro704fs) | Pathogenic |
| 1402630 | NM_005219.5(DIAPH1):c.1016del (p.Met339fs) | Pathogenic |
| 1413320 | NM_005219.5(DIAPH1):c.910dup (p.Ser304fs) | Pathogenic |
| 1923492 | NM_005219.5(DIAPH1):c.626dup (p.Tyr209Ter) | Pathogenic |
| 1949957 | NM_005219.5(DIAPH1):c.1483C>T (p.Arg495Ter) | Pathogenic |
| 1990251 | NM_005219.5(DIAPH1):c.1051C>T (p.Arg351Ter) | Pathogenic |
| 2095210 | NM_005219.5(DIAPH1):c.2350_2351dup (p.Trp784fs) | Pathogenic |
| 2097632 | NM_005219.5(DIAPH1):c.3211_3212insAT (p.Arg1071fs) | Pathogenic |
| 217753 | NM_005219.5(DIAPH1):c.2769del (p.Phe923fs) | Pathogenic |
| 217754 | NM_005219.5(DIAPH1):c.3145C>T (p.Arg1049Ter) | Pathogenic |
| 228577 | NM_005219.5(DIAPH1):c.3637C>T (p.Arg1213Ter) | Pathogenic |
| 2935331 | NM_005219.5(DIAPH1):c.684+1G>A | Pathogenic |
| 2953190 | NM_005219.5(DIAPH1):c.89del (p.Gly30fs) | Pathogenic |
| 2953941 | NM_005219.5(DIAPH1):c.839del (p.Leu280fs) | Pathogenic |
| 3246410 | NC_000005.9:g.(?140998345)(140998481_?)del | Pathogenic |
| 3748740 | NM_005219.5(DIAPH1):c.991C>T (p.Arg331Ter) | Pathogenic |
| 3750274 | NM_005219.5(DIAPH1):c.811C>T (p.Gln271Ter) | Pathogenic |
| 3752601 | NM_005219.5(DIAPH1):c.30del (p.Gly11fs) | Pathogenic |
| 3754264 | NM_005219.5(DIAPH1):c.2108del (p.Pro703fs) | Pathogenic |
| 3756314 | NM_005219.5(DIAPH1):c.1609del (p.Leu537fs) | Pathogenic |
| 3760376 | NM_005219.5(DIAPH1):c.3516del (p.Glu1173fs) | Pathogenic |
| 391928 | NM_005219.5(DIAPH1):c.2794C>T (p.Arg932Ter) | Pathogenic |
| 419689 | NM_005219.5(DIAPH1):c.1971_1972delinsT (p.Leu657fs) | Pathogenic |
| 424874 | NM_005219.5(DIAPH1):c.3624_3625del (p.Ala1210fs) | Pathogenic |
| 504168 | NM_005219.5(DIAPH1):c.2905_2906dup (p.Ser970fs) | Pathogenic |
SpliceAI
4202 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:141524138:CTTA:C | donor_gain | 1.0000 |
| 5:141524139:TTAC:T | donor_loss | 1.0000 |
| 5:141524140:TA:T | donor_loss | 1.0000 |
| 5:141524141:A:AC | donor_gain | 1.0000 |
| 5:141524141:A:AG | donor_loss | 1.0000 |
| 5:141524141:AC:A | donor_gain | 1.0000 |
| 5:141524142:C:CC | donor_gain | 1.0000 |
| 5:141524142:CC:C | donor_gain | 1.0000 |
| 5:141524225:GCCCT:G | acceptor_gain | 1.0000 |
| 5:141524226:CCCT:C | acceptor_gain | 1.0000 |
| 5:141524226:CCCTC:C | acceptor_gain | 1.0000 |
| 5:141524227:CCT:C | acceptor_gain | 1.0000 |
| 5:141524227:CCTC:C | acceptor_gain | 1.0000 |
| 5:141524228:CT:C | acceptor_gain | 1.0000 |
| 5:141524228:CTC:C | acceptor_gain | 1.0000 |
| 5:141524228:CTCTG:C | acceptor_loss | 1.0000 |
| 5:141524229:TCT:T | acceptor_gain | 1.0000 |
| 5:141524229:TCTGT:T | acceptor_loss | 1.0000 |
| 5:141524230:C:CC | acceptor_gain | 1.0000 |
| 5:141524230:CT:C | acceptor_loss | 1.0000 |
| 5:141524231:T:A | acceptor_loss | 1.0000 |
| 5:141524233:T:C | acceptor_gain | 1.0000 |
| 5:141524233:T:TC | acceptor_gain | 1.0000 |
| 5:141526032:CCTCA:C | donor_loss | 1.0000 |
| 5:141526033:CTCAC:C | donor_loss | 1.0000 |
| 5:141526034:TCAC:T | donor_loss | 1.0000 |
| 5:141526035:CACCT:C | donor_loss | 1.0000 |
| 5:141526037:C:CA | donor_loss | 1.0000 |
| 5:141526037:CCTG:C | donor_gain | 1.0000 |
| 5:141526170:CTTG:C | acceptor_gain | 1.0000 |
AlphaMissense
8377 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:141524168:G:C | F1212L | 1.000 |
| 5:141524168:G:T | F1212L | 1.000 |
| 5:141524170:A:G | F1212L | 1.000 |
| 5:141524178:C:T | G1209E | 1.000 |
| 5:141524179:C:A | G1209W | 1.000 |
| 5:141524187:A:G | L1206P | 1.000 |
| 5:141524191:C:G | A1205P | 1.000 |
| 5:141524199:A:G | L1202P | 1.000 |
| 5:141524206:C:G | D1200H | 1.000 |
| 5:141528727:C:T | G998D | 1.000 |
| 5:141528910:A:G | L937P | 1.000 |
| 5:141529269:A:G | L894P | 1.000 |
| 5:141529694:A:G | I862T | 1.000 |
| 5:141529694:A:T | I862N | 1.000 |
| 5:141534337:A:G | L860P | 1.000 |
| 5:141573500:A:G | W784R | 1.000 |
| 5:141573500:A:T | W784R | 1.000 |
| 5:141578546:A:G | L338P | 1.000 |
| 5:141578609:A:G | L317P | 1.000 |
| 5:141580879:C:T | G230E | 1.000 |
| 5:141582318:G:C | N226K | 1.000 |
| 5:141582318:G:T | N226K | 1.000 |
| 5:141582338:A:G | C220R | 1.000 |
| 5:141583289:C:A | W179C | 1.000 |
| 5:141583289:C:G | W179C | 1.000 |
| 5:141583291:A:G | W179R | 1.000 |
| 5:141583291:A:T | W179R | 1.000 |
| 5:141583503:A:G | L172P | 1.000 |
| 5:141583503:A:T | L172H | 1.000 |
| 5:141583515:A:G | L168P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000034300 (5:141569068 A>G), RS1000051509 (5:141524869 A>C,T), RS1000120819 (5:141570597 C>T), RS1000132010 (5:141584623 T>C), RS1000220468 (5:141572325 G>A,C,T), RS1000242019 (5:141606871 G>C), RS1000267776 (5:141523484 T>G), RS1000273476 (5:141575671 A>C), RS1000290688 (5:141619000 A>C,G,T), RS1000366902 (5:141538111 A>G), RS1000367028 (5:141553828 G>A), RS1000374807 (5:141538516 T>G), RS1000407078 (5:141569384 A>C), RS1000427143 (5:141538356 G>A), RS1000434329 (5:141560300 A>C)
Disease associations
OMIM: gene MIM:602121 | disease phenotypes: MIM:124900, MIM:616632, MIM:274600, MIM:248510
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| DIAPH1-related sensorineural hearing loss-thrombocytopenia syndrome | Definitive | Autosomal dominant |
| autosomal dominant nonsyndromic hearing loss 1 | Strong | Autosomal dominant |
| progressive microcephaly-seizures-cortical blindness-developmental delay syndrome | Strong | Autosomal recessive |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| progressive microcephaly-seizures-cortical blindness-developmental delay syndrome | Definitive | AR |
| DIAPH1-related sensorineural hearing loss-thrombocytopenia syndrome | Definitive | AD |
Mondo (10): autosomal dominant nonsyndromic hearing loss 1 (MONDO:0007424), progressive microcephaly-seizures-cortical blindness-developmental delay syndrome (MONDO:0014714), hearing loss disorder (MONDO:0005365), Pendred syndrome (MONDO:0010134), vascular dementia (MONDO:0004648), microcephaly (MONDO:0001149), epilepsy (MONDO:0005027), intellectual disability (MONDO:0001071), beta-mannosidosis (MONDO:0009562), DIAPH1-related sensorineural hearing loss-thrombocytopenia syndrome (MONDO:0044635)
Orphanet (7): Progressive microcephaly-seizures-cortical blindness-developmental delay syndrome (Orphanet:477814), Rare autosomal dominant non-syndromic sensorineural deafness type DFNA (Orphanet:90635), Pendred syndrome (Orphanet:705), Rare genetic deafness (Orphanet:96210), Beta-mannosidosis (Orphanet:118), DIAPH1-related sensorineural hearing loss-thrombocytopenia syndrome (Orphanet:494444), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
47 total (30 of 47 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000132 | Menorrhagia |
| HP:0000252 | Microcephaly |
| HP:0000253 | Progressive microcephaly |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000408 | Progressive sensorineural hearing impairment |
| HP:0000648 | Optic atrophy |
| HP:0000823 | Delayed puberty |
| HP:0001009 | Telangiectasia |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001252 | Hypotonia |
| HP:0001263 | Global developmental delay |
| HP:0001510 | Growth delay |
| HP:0001531 | Failure to thrive in infancy |
| HP:0001873 | Thrombocytopenia |
| HP:0001875 | Decreased total neutrophil count |
| HP:0001891 | Iron deficiency anemia |
| HP:0002079 | Hypoplasia of the corpus callosum |
| HP:0002110 | Bronchiectasis |
| HP:0002119 | Ventriculomegaly |
| HP:0002187 | Profound intellectual disability |
| HP:0002465 | Poor speech |
| HP:0002665 | Lymphoma |
| HP:0002719 | Recurrent infections |
| HP:0003202 | Skeletal muscle atrophy |
| HP:0003540 | Impaired platelet aggregation |
| HP:0003593 | Infantile onset |
| HP:0003621 | Juvenile onset |
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004599_37 | Mean platelet volume | 4.000000e-10 |
| GCST005038_103 | Allergic disease (asthma, hay fever or eczema) | 6.000000e-11 |
| GCST010002_39 | Refractive error | 2.000000e-14 |
| GCST010244_167 | Triglyceride levels | 4.000000e-11 |
| GCST012490_103 | Femur bone mineral density x serum urate levels interaction | 9.000000e-09 |
| GCST90000050_37 | Age at first birth | 1.000000e-08 |
| GCST90002395_465 | Mean platelet volume | 6.000000e-10 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004530 | triglyceride measurement |
| EFO:0004531 | urate measurement |
| EFO:0009101 | age at first birth measurement |
MeSH disease descriptors (8)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D015140 | Dementia, Vascular | C10.228.140.300.400; C10.228.140.300.510.800.500; C10.228.140.380.230; C10.228.140.695.500; C14.907.137.126.372.500; C14.907.253.560.350.500; F03.615.400.350 |
| D004827 | Epilepsy | C10.228.140.490 |
| D034381 | Hearing Loss | C09.218.458.341; C10.597.751.418.341; C23.888.592.763.393.341 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
| D044905 | beta-Mannosidosis | C16.320.565.202.607.750; C16.320.565.595.577.750; C18.452.648.202.607.750; C18.452.648.595.577.750 |
| C565121 | Deafness, Autosomal Dominant 1 (supp.) | |
| C536648 | Pendred syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL4295668 (SINGLE PROTEIN), CHEMBL4523648 (PROTEIN COMPLEX)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
4 potent at pChembl≥5 of 4 total, top 4 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 8.28 | Kd | 5.213 | nM | CHEMBL3752910 |
| 8.28 | ED50 | 5.213 | nM | CHEMBL3752910 |
| 5.84 | Kd | 1440 | nM | CHEMBL5653589 |
| 5.84 | ED50 | 1440 | nM | CHEMBL5653589 |
PubChem BioAssay actives
2 with measured affinity, of 5 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148239: Binding affinity to human DIAPH1 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0052 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148239: Binding affinity to human DIAPH1 incubated for 45 mins by Kinobead based pull down assay | kd | 1.4396 | uM |
CTD chemical–gene interactions
46 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects cotreatment, decreases methylation, decreases expression | 4 |
| sodium arsenite | increases expression, decreases expression, increases abundance | 2 |
| Tobacco Smoke Pollution | affects expression, increases expression | 2 |
| Valproic Acid | increases expression, affects expression | 2 |
| FR900359 | decreases phosphorylation | 1 |
| dicrotophos | increases expression | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| PCB 180 | decreases expression | 1 |
| ICG 001 | decreases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| bisphenol S | decreases expression, affects cotreatment | 1 |
| bisphenol AF | increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Acetaminophen | decreases expression | 1 |
| Arsenic | decreases expression, increases abundance | 1 |
| Atrazine | increases expression | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Cisplatin | decreases expression | 1 |
| Dexamethasone | affects cotreatment, decreases expression | 1 |
| Diethylhexyl Phthalate | increases expression | 1 |
| Dinitrochlorobenzene | affects binding | 1 |
| Endosulfan | decreases expression | 1 |
ChEMBL screening assays
3 unique, capped per target: 3 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4119004 | Binding | Binding affinity to DIAPH1 in human NCI-H358 cells at 1 uM by mass spectrometry based pull down assay | Studies of TAK1-centered polypharmacology with novel covalent TAK1 inhibitors. — Bioorg Med Chem |
Cellosaurus cell lines
5 cell lines: 3 cancer cell line, 2 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1DD | Abcam HCT 116 DIAPH1 KO | Cancer cell line | Male |
| CVCL_B2VW | Abcam HEK293T DIAPH1 KO | Transformed cell line | Female |
| CVCL_E1FP | Abcam HEK293 DIAPH1 KO | Transformed cell line | Female |
| CVCL_SK82 | HAP1 DIAPH1 (-) 1 | Cancer cell line | Male |
| CVCL_SK83 | HAP1 DIAPH1 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00205881 | PHASE4 | COMPLETED | Bilateral Benefit in Adult Users of the HiRes 90K Bionic Ear System |
| NCT00331539 | PHASE4 | UNKNOWN | Relationship Between Auto NRT and Behavioural T & C Levels With the Nucleus Freedom Cochlear Implant |
| NCT00424307 | PHASE4 | UNKNOWN | Bilateral Cochlear Implant Benefit in Young Children |
| NCT00765635 | PHASE4 | COMPLETED | Chlorobutanol, Potassium Carbonate, and Irrigation in Cerumen Removal |
| NCT03321006 | PHASE4 | COMPLETED | Treating Hearing Loss to Improve Mood and Cognition in Older Adults |
| NCT01499901 | PHASE3 | WITHDRAWN | Comparison of the Bilateral Sequential and Simultaneous Cochlear Implantation in the Deaf Children |
| NCT02561091 | PHASE3 | COMPLETED | AM-111 in the Treatment of Acute Inner Ear Hearing Loss |
| NCT03331627 | PHASE3 | COMPLETED | Safety and Efficacy of STR001-IT and STR001-ER in Patients With SSHL |
| NCT05532657 | PHASE3 | ACTIVE_NOT_RECRUITING | ACHIEVE Brain Health Follow-Up Study |
| NCT00013455 | PHASE2 | COMPLETED | Quantifying Auditory Perceptual Learning Following Hearing Aid Fitting |
| NCT00323427 | PHASE2 | COMPLETED | Clinical Trial of the Living Well With Hearing Loss Workshop |
| NCT00552786 | PHASE2 | COMPLETED | Antioxidation Medication for Noise-induced Hearing Loss |
| NCT00802425 | PHASE2 | COMPLETED | Efficacy of AM-111 in Patients With Acute Sensorineural Hearing Loss |
| NCT01139281 | PHASE2 | COMPLETED | The Protective Effect of Ginkgo Biloba Extract on Cisplatin-induced Ototoxicity in Humans |
| NCT01451853 | PHASE2 | UNKNOWN | SPI-1005 for Prevention and Treatment of Chemotherapy Induced Hearing Loss |
| NCT01588925 | PHASE2 | COMPLETED | Hearing Preservation Using Dexamethasone and Hyaluronic Acid for Cochlear Implantation |
| NCT01773278 | PHASE2 | RECRUITING | Cholesterol and Antioxidant Treatment in Patients With Smith-Lemli-Opitz Syndrome (SLOS) |
| NCT02832128 | PHASE2 | COMPLETED | Evaluating Possible Improvement in Speech and Hearing Tests After 28 Days of Dosing of the Study Drug AUT00063 Compared to Placebo (QuicKfire) |
| NCT04915183 | PHASE2 | RECRUITING | Atorvastatin to Reduce Cisplatin-Induced Hearing Loss Among Individuals With Head and Neck Cancer |
| NCT05258773 | PHASE2 | COMPLETED | Evaluation of the Presence of SENS-401 in the Perilymph |
| NCT06340633 | PHASE2 | RECRUITING | SPI-1005 in Adults Receiving Cochlear Implant |
| NCT00582946 | PHASE1 | COMPLETED | Wide-Bandwidth Open Canal Hearing Aid For Better Multitalker Speech Understanding |
| NCT00584155 | PHASE1 | WITHDRAWN | Protection From Cisplatin Ototoxicity by Lactated Ringers |
| NCT01206829 | PHASE1 | UNKNOWN | Hearing Impairment, Cognitive Therapy and Coping |
| NCT01256229 | PHASE1 | COMPLETED | Outcomes In Children With Developmental Delay And Deafness |
| NCT01343394 | PHASE1 | WITHDRAWN | Safety of Autologous Human Umbilical Cord Blood Mononuclear Fraction to Treat Acquired Hearing Loss in Children |
| NCT01452607 | PHASE1 | COMPLETED | Study to Evaluate the Safety and Pharmacokinetics of SPI-1005 |
| NCT02259595 | PHASE1 | COMPLETED | Study to Determine the Safety, Tolerability, and Pharmacokinetic Profile of HPN-07 and HPN-07 Plus NAC |
| NCT04041440 | PHASE1 | COMPLETED | Speech Recognition Training in Children With Hearing Loss |
| NCT07218913 | PHASE1 | RECRUITING | Testing the Addition of Pedmark to Cisplatin Chemotherapy for Reducing Drug-Induced Ear Damage in Men With Stage II-III Metastatic Testicular Germ Cell Tumors |
| NCT00486577 | PHASE2/PHASE3 | COMPLETED | Chronic Electrical Stimulation of the Auditory Cortex for Intractable Tinnitus |
| NCT00789061 | PHASE2/PHASE3 | UNKNOWN | Applying Proton Pump Inhibitor to Prevent and Treat Acute Fluctuating Hearing Loss in Patients With SLC26A4 Mutation |
| NCT01423409 | PHASE2/PHASE3 | COMPLETED | Multicenter Trial Assessing an Innovative VAS of Pain Among Deaf People |
| NCT05786378 | PHASE2/PHASE3 | UNKNOWN | Assessment of The Efficacy of Intratympanic Platelet Rich Plasma for Treatment of Sensorineural Hearing Loss. |
| NCT01108601 | PHASE1/PHASE2 | UNKNOWN | Transtympanic Ringer’s Lactate for the Prevention of Cisplatin Ototoxicity |
| NCT01621256 | PHASE1/PHASE2 | COMPLETED | Efficacy, Safety, and Tolerability of Ancrod in Patients With Sudden Hearing Loss |
| NCT06370351 | PHASE1/PHASE2 | RECRUITING | A Phase I/II Clinical Trial with SENS-501 in Children Suffering from Severe to Profound Hearing Loss Due to Otoferlin (OTOF) Mutations |
| NCT06545175 | PHASE1/PHASE2 | RECRUITING | Intracochlear Application of VSF1.01 for the Reduction of Cochlear Implant Surgery Related Trauma |
| NCT07304024 | PHASE1/PHASE2 | RECRUITING | A Treatment for a Form of Age-Related Central Auditory Processing Disorder Consisting of Clemastine Fumarate Plus Engineered Sound |
| NCT01109576 | EARLY_PHASE1 | COMPLETED | Workshops for Veterans With Vision and Hearing Loss |
Related Atlas pages
- Associated diseases: DIAPH1-related sensorineural hearing loss-thrombocytopenia syndrome, autosomal dominant nonsyndromic hearing loss 1, progressive microcephaly-seizures-cortical blindness-developmental delay syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal dominant nonsyndromic hearing loss 1, beta-mannosidosis, DIAPH1-related sensorineural hearing loss-thrombocytopenia syndrome, Pendred syndrome, progressive microcephaly-seizures-cortical blindness-developmental delay syndrome, vascular dementia