DISP1
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Also known as DISPAMGC13130DKFZP434I0428MGC16796
Summary
DISP1 (dispatched RND transporter family member 1, HGNC:19711) is a protein-coding gene on chromosome 1q41, encoding Protein dispatched homolog 1 (Q96F81). Functions in hedgehog (Hh) signaling.
The pattern of cellular proliferation and differentiation that leads to normal development of embryonic structures often depends upon the localized production of secreted protein signals. Cells surrounding the source of a particular signal respond in a graded manner according to the effective concentration of the signal, and this response produces the pattern of cell types constituting the mature structure. A novel segment-polarity gene known as dispatched has been identified in Drosophila and its protein product is required for normal Hedgehog (Hh) signaling. This gene is one of two human homologs of Drosophila dispatched and, based on sequence identity to its mouse counterpart, the encoded protein may play an essential role in Hh patterning activities in the early embryo.
Source: NCBI Gene 84976 — RefSeq curated summary.
At a glance
- Gene–disease (curated): holoprosencephaly (Strong, GenCC)
- GWAS associations: 2
- Clinical variants (ClinVar): 497 total — 8 pathogenic, 5 likely-pathogenic
- Phenotypes (HPO): 115
- Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_001377229
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:19711 |
| Approved symbol | DISP1 |
| Name | dispatched RND transporter family member 1 |
| Location | 1q41 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DISPA, MGC13130, DKFZP434I0428, MGC16796 |
| Ensembl gene | ENSG00000154309 |
| Ensembl biotype | protein_coding |
| OMIM | 607502 |
| Entrez | 84976 |
Gene structure
Transcript identifiers
Ensembl transcripts: 48 — 27 protein_coding, 16 protein_coding_CDS_not_defined, 3 nonsense_mediated_decay, 2 retained_intron
ENST00000284476, ENST00000360254, ENST00000420335, ENST00000426045, ENST00000434872, ENST00000435378, ENST00000439440, ENST00000442171, ENST00000444858, ENST00000450784, ENST00000457636, ENST00000482856, ENST00000495684, ENST00000654502, ENST00000657452, ENST00000661663, ENST00000663328, ENST00000669958, ENST00000674709, ENST00000674736, ENST00000675039, ENST00000675850, ENST00000675961, ENST00000676139, ENST00000676303, ENST00000676412, ENST00000900733, ENST00000900734, ENST00000900735, ENST00000900736, ENST00000900737, ENST00000900738, ENST00000900739, ENST00000900740, ENST00000900741, ENST00000900742, ENST00000900743, ENST00000900744, ENST00000900745, ENST00000900746, ENST00000900747, ENST00000940100, ENST00000940101, ENST00000940102, ENST00000940103, ENST00000953645, ENST00000953646, ENST00000953647
RefSeq mRNA: 5 — MANE Select: NM_001377229
NM_001350630, NM_001369594, NM_001377228, NM_001377229, NM_032890
CCDS: CCDS1536
Canonical transcript exons
ENST00000675850 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001015181 | 222992013 | 222992110 |
| ENSE00001015183 | 222994885 | 222994982 |
| ENSE00001424783 | 223002385 | 223005995 |
| ENSE00001442890 | 222928430 | 222928570 |
| ENSE00003557580 | 222990625 | 222990748 |
| ENSE00003576158 | 222983080 | 222983109 |
| ENSE00003601824 | 222991520 | 222991647 |
| ENSE00003732619 | 222942807 | 222943332 |
| ENSE00003903145 | 222815039 | 222815078 |
Expression profiles
Bgee: expression breadth ubiquitous, 221 present calls, max score 92.43.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 11.8140 / max 208.6328, expressed in 1741 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 8734 | 5.6153 | 1663 |
| 8735 | 4.1816 | 1527 |
| 8739 | 0.8129 | 312 |
| 8736 | 0.5197 | 277 |
| 8741 | 0.3193 | 183 |
| 8740 | 0.3160 | 167 |
| 8733 | 0.0491 | 12 |
Top tissues by expression
242 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 92.43 | gold quality |
| right testis | UBERON:0004534 | 91.51 | gold quality |
| left testis | UBERON:0004533 | 91.23 | gold quality |
| testis | UBERON:0000473 | 90.51 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 89.48 | silver quality |
| pancreatic ductal cell | CL:0002079 | 88.94 | silver quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 88.11 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 88.08 | gold quality |
| islet of Langerhans | UBERON:0000006 | 88.06 | gold quality |
| calcaneal tendon | UBERON:0003701 | 87.75 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 87.36 | gold quality |
| tibial nerve | UBERON:0001323 | 86.97 | gold quality |
| right lung | UBERON:0002167 | 86.77 | gold quality |
| upper lobe of lung | UBERON:0008948 | 86.30 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 86.19 | gold quality |
| metanephros cortex | UBERON:0010533 | 86.19 | gold quality |
| tendon | UBERON:0000043 | 86.17 | gold quality |
| gall bladder | UBERON:0002110 | 85.80 | gold quality |
| sural nerve | UBERON:0015488 | 85.79 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.34 | gold quality |
| small intestine | UBERON:0002108 | 85.08 | gold quality |
| omental fat pad | UBERON:0010414 | 84.89 | gold quality |
| peritoneum | UBERON:0002358 | 84.81 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 84.67 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 84.61 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 84.59 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 84.57 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 84.49 | gold quality |
| lung | UBERON:0002048 | 84.43 | gold quality |
| oviduct epithelium | UBERON:0004804 | 84.43 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-35 | yes | 30.43 |
| E-ANND-3 | yes | 6.71 |
Regulation
Is transcription factor: no
Functional genomics
ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 10)
- describe two independent families with truncating mutations in DISP1 that resemble the cardinal craniofacial and neuro-developmental features of a recently described microdeletion syndrome that includes this gene (PMID:19184110)
- report of 1st de novo DISP1 point mutation in patient with congenital diaphragmatic hernia (CDH); finding with Disp1 embryonic mouse diaphragm and lung expression and previously reported 1q41q42 aberrations in CDH suggests DISP1 may be CDH candidate gene (PMID:20799323)
- Studies indicate that DISP1 haploinsufficiency may not be solely responsible for the major features of 1q41q42 microdeletion syndrome, and other genes in the SRO likely play a role in the phenotype. (PMID:20951845)
- DISP-1 is required for non-small cell lung carcinoma cells proliferation (PMID:22733134)
- The top single-nucleotide polymorphism (SNP) was rs17162912 (P=1.76 x 10(-8)), which is near the DISP1 gene on 1q41-q42, a microdeletion region implicated in neurological development. (PMID:25824302)
- Genome-wide association study does not support the role of DISP1 in predicting serotonin reuptake inhibitor response in obsessive-compulsive disorder. (PMID:29953682)
- Structure of human Dispatched-1 provides insights into Hedgehog ligand biogenesis. (PMID:32646883)
- Conserved cholesterol-related activities of Dispatched 1 drive Sonic hedgehog shedding from the cell membrane. (PMID:34308968)
- Structural insights into proteolytic activation of the human Dispatched1 transporter for Hedgehog morphogen release. (PMID:34845226)
- DISP1 deficiency: Monoallelic and biallelic variants cause a spectrum of midline craniofacial malformations. (PMID:38529886)
Cross-species orthologs
9 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | disp1 | ENSDARG00000044417 |
| mus_musculus | Disp1 | ENSMUSG00000030768 |
| rattus_norvegicus | Disp1 | ENSRNOG00000003635 |
| drosophila_melanogaster | ptc | FBGN0003892 |
| drosophila_melanogaster | disp | FBGN0029088 |
| drosophila_melanogaster | Ptr | FBGN0262867 |
| caenorhabditis_elegans | WBGENE00004208 | |
| caenorhabditis_elegans | WBGENE00004211 | |
| caenorhabditis_elegans | ptr-17 | WBGENE00004231 |
Paralogs (10): NPC1L1 (ENSG00000015520), SCAP (ENSG00000114650), PTCH2 (ENSG00000117425), DISP2 (ENSG00000140323), NPC1 (ENSG00000141458), PTCHD1 (ENSG00000165186), PTCHD3 (ENSG00000182077), PTCH1 (ENSG00000185920), DISP3 (ENSG00000204624), PTCHD4 (ENSG00000244694)
Protein
Protein identifiers
Protein dispatched homolog 1 — Q96F81 (reviewed: Q96F81)
All UniProt accessions (5): Q96F81, A0A6Q8PFL8, A0A6Q8PG23, A0A6Q8PG27, A0A6Q8PH18
UniProt curated annotations — full annotation on UniProt →
Function. Functions in hedgehog (Hh) signaling. Regulates the release and extracellular accumulation of cholesterol-modified hedgehog proteins and is hence required for effective production of the Hh signal. Synergizes with SCUBE2 to cause an increase in SHH secretion.
Subunit / interactions. Interacts with SHH via the cholesterol anchor of the dually lipid-modified SHH (ShhNp).
Subcellular location. Membrane.
Disease relevance. Holoprosencephaly 10 (HPE10) [MIM:621143] A form of holoprosencephaly, a structural anomaly of the brain in which the developing forebrain fails to correctly separate into right and left hemispheres. It is a genetically and clinically heterogeneous disorder with a wide spectrum of severity, ranging from alobar holoprosencephaly with severe facial abnormalities, such as cyclopia and proboscis, to mild forms that include lobar or microform holoprosencephaly, without cerebral malformations and with mild craniofacial defects. HPE10 inheritance pattern is autosomal recessive. Autosomal dominant inheritance with incomplete penetrance or oligogenic inheritance have been reported in some families. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the dispatched family.
RefSeq proteins (5): NP_001337559, NP_001356523, NP_001364157, NP_001364158, NP_116279 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000731 | SSD | Domain |
| IPR004869 | MMPL_dom | Domain |
| IPR052081 | Dispatched_Hh_regulator | Family |
| IPR053958 | HMGCR/SNAP/NPC1-like_SSD | Domain |
Pfam: PF03176, PF12349
UniProt features (47 total): sequence variant 26, transmembrane region 12, sequence conflict 5, glycosylation site 2, chain 1, domain 1
Structure
Experimental structures (PDB)
4 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7E2G | ELECTRON MICROSCOPY | 3.61 |
| 7E2H | ELECTRON MICROSCOPY | 3.68 |
| 7E2I | ELECTRON MICROSCOPY | 4.07 |
| 6XE6 | ELECTRON MICROSCOPY | 4.53 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96F81-F1 | 65.21 | 0.29 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (2): 59, 582
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 311 (showing top):
GAUSSMANN_MLL_AF4_FUSION_TARGETS_A_UP, GOBP_REGULATION_OF_HORMONE_LEVELS, GOBP_DORSAL_VENTRAL_PATTERN_FORMATION, GOBP_SPECIFICATION_OF_SYMMETRY, GOBP_REGULATION_OF_PROTEIN_SECRETION, GOBP_PROTEIN_MATURATION, GOBP_MUSCLE_STRUCTURE_DEVELOPMENT, GOBP_AMIDE_METABOLIC_PROCESS, GOBP_EMBRYONIC_PATTERN_SPECIFICATION, KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_DN, GOBP_SKELETAL_MUSCLE_ORGAN_DEVELOPMENT, GOBP_SECRETION, GOBP_SMOOTHENED_SIGNALING_PATHWAY, GOBP_RESPIRATORY_SYSTEM_DEVELOPMENT, GOBP_EMBRYO_DEVELOPMENT
GO Biological Process (9): smoothened signaling pathway (GO:0007224), patched ligand maturation (GO:0007225), determination of left/right symmetry (GO:0007368), embryonic pattern specification (GO:0009880), dorsal/ventral pattern formation (GO:0009953), peptide transport (GO:0015833), regulation of protein secretion (GO:0050708), diaphragm development (GO:0060539), protein homotrimerization (GO:0070207)
GO Molecular Function (2): molecular carrier activity (GO:0140104), protein binding (GO:0005515)
GO Cellular Component (2): membrane (GO:0016020), basolateral plasma membrane (GO:0016323)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| binding | 2 |
| cell surface receptor signaling pathway | 1 |
| peptide hormone processing | 1 |
| determination of bilateral symmetry | 1 |
| left/right pattern formation | 1 |
| pattern specification process | 1 |
| embryo development | 1 |
| regionalization | 1 |
| transport | 1 |
| protein secretion | 1 |
| regulation of protein transport | 1 |
| regulation of secretion by cell | 1 |
| skeletal muscle organ development | 1 |
| respiratory system development | 1 |
| protein homooligomerization | 1 |
| protein trimerization | 1 |
| molecular_function | 1 |
| cellular anatomical structure | 1 |
| basal plasma membrane | 1 |
| plasma membrane region | 1 |
Protein interactions and networks
STRING
592 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DISP1 | ZIC2 | O95409 | 919 |
| DISP1 | SIX3 | O95343 | 910 |
| DISP1 | SHH | Q15465 | 861 |
| DISP1 | FOXA2 | Q9Y261 | 805 |
| DISP1 | GAS1 | P54826 | 694 |
| DISP1 | CDON | Q4KMG0 | 644 |
| DISP1 | BPNT1 | O95861 | 636 |
| DISP1 | SCUBE2 | Q9NQ36 | 619 |
| DISP1 | UBIAD1 | Q9Y5Z9 | 598 |
| DISP1 | SMO | Q99835 | 578 |
| DISP1 | PTCH2 | Q9Y6C5 | 561 |
| DISP1 | LEFTY1 | O75610 | 548 |
| DISP1 | LBR | Q14739 | 542 |
| DISP1 | GLI2 | P10070 | 532 |
| DISP1 | DHH | O43323 | 518 |
IntAct
13 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| LAPTM5 | DISP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DISP1 | LAPTM5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DISP1 | WFS1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ADAMTSL4 | DISP1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| IL17RC | C2CD2L | psi-mi:“MI:0914”(association) | 0.350 |
| C15orf32 | NPC1 | psi-mi:“MI:0914”(association) | 0.350 |
| DISP1 | CST4 | psi-mi:“MI:0914”(association) | 0.350 |
| RNF133 | CD14 | psi-mi:“MI:0914”(association) | 0.350 |
| MAGT1 | PES1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (16): DISP1 (Two-hybrid), DISP1 (Affinity Capture-MS), DISP1 (Affinity Capture-MS), DISP1 (Proximity Label-MS), DISP1 (Affinity Capture-RNA), DISP1 (Affinity Capture-MS), DISP1 (Affinity Capture-MS), IGJ (Affinity Capture-MS), DISP1 (Affinity Capture-MS), CST2 (Affinity Capture-MS), CST4 (Affinity Capture-MS), DISP1 (Affinity Capture-MS), DISP1 (Affinity Capture-MS), DISP1 (Co-fractionation), DISP1 (Affinity Capture-MS)
ESM2 similar proteins: A1L272, A2RV80, A4IF30, A6QL92, A6QPI1, O02777, O80605, P17200, P20272, P21554, P47746, P51810, P56971, P70259, Q1LZI2, Q2V4F9, Q3TDN0, Q3UGM2, Q4R794, Q5F383, Q5FVJ3, Q5IS73, Q5R4D7, Q5R6J3, Q5RD30, Q66H88, Q6P0E8, Q6P499, Q6R5J2, Q71SP5, Q8BGN5, Q8BZK4, Q8CBH5, Q8IY50, Q8NA31, Q8NBV4, Q8R314, Q8RWF4, Q8WV83, Q91WB2
Diamond homologs: A7MBM2, Q3TDN0, Q6R5J1, Q6R5J2, Q8CIP5, Q96F81, Q9VNJ5
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| DISP1 | “up-regulates activity” | SHH | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
497 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 8 |
| Likely pathogenic | 5 |
| Uncertain significance | 326 |
| Likely benign | 99 |
| Benign | 40 |
Top pathogenic / likely-pathogenic (13)
| Variant ID | HGVS | Classification |
|---|---|---|
| 2114849 | NM_001377229.1(DISP1):c.472C>T (p.Gln158Ter) | Pathogenic |
| 2819279 | NM_001377229.1(DISP1):c.34_37del (p.Val11_Val12insTer) | Pathogenic |
| 3776742 | DISP1, SER144CYS | Pathogenic |
| 3776743 | DISP1, GLN1320TER | Pathogenic |
| 3776744 | DISP1, SER746PRO | Pathogenic |
| 3776745 | DISP1, PRO189LEU | Pathogenic |
| 3776746 | DISP1, GLY1047SER | Pathogenic |
| 3776747 | DISP1, 1-BP DEL, NT4408 | Pathogenic |
| 2836390 | NM_001377229.1(DISP1):c.664-2A>G | Likely pathogenic |
| 3390848 | NM_001377229.1(DISP1):c.431C>G (p.Ser144Cys) | Likely pathogenic |
| 4057294 | NM_001377229.1(DISP1):c.2064C>A (p.Cys688Ter) | Likely pathogenic |
| 4845551 | NM_001377229.1(DISP1):c.2839G>A (p.Val947Met) | Likely pathogenic |
| 4849370 | NM_001377229.1(DISP1):c.3765del (p.Glu1257fs) | Likely pathogenic |
SpliceAI
1929 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:222928567:AAAGG:A | donor_loss | 1.0000 |
| 1:222928568:AAGGT:A | donor_loss | 1.0000 |
| 1:222928569:AGG:A | donor_loss | 1.0000 |
| 1:222928570:GGTA:G | donor_loss | 1.0000 |
| 1:222928571:G:C | donor_loss | 1.0000 |
| 1:222928572:T:G | donor_loss | 1.0000 |
| 1:222983078:A:AG | acceptor_gain | 1.0000 |
| 1:222983079:G:GG | acceptor_gain | 1.0000 |
| 1:222983109:GGTAA:G | donor_loss | 1.0000 |
| 1:222983110:GTA:G | donor_loss | 1.0000 |
| 1:222990623:A:AG | acceptor_gain | 1.0000 |
| 1:222990624:G:GA | acceptor_gain | 1.0000 |
| 1:222990624:GTT:G | acceptor_gain | 1.0000 |
| 1:222990624:GTTAT:G | acceptor_gain | 1.0000 |
| 1:222990702:TTG:T | donor_gain | 1.0000 |
| 1:222990746:CTGG:C | donor_loss | 1.0000 |
| 1:222990747:TGGT:T | donor_loss | 1.0000 |
| 1:222990748:GGTA:G | donor_loss | 1.0000 |
| 1:222990749:G:GC | donor_loss | 1.0000 |
| 1:222990750:T:G | donor_loss | 1.0000 |
| 1:222991514:CCTTA:C | acceptor_loss | 1.0000 |
| 1:222991515:CTTA:C | acceptor_loss | 1.0000 |
| 1:222991516:TTAG:T | acceptor_loss | 1.0000 |
| 1:222991517:TAG:T | acceptor_loss | 1.0000 |
| 1:222991518:A:AG | acceptor_gain | 1.0000 |
| 1:222991518:A:C | acceptor_loss | 1.0000 |
| 1:222991518:AG:A | acceptor_gain | 1.0000 |
| 1:222991519:G:A | acceptor_gain | 1.0000 |
| 1:222991519:G:GG | acceptor_gain | 1.0000 |
| 1:222992012:GCC:G | acceptor_gain | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000007481 (1:222835921 C>G,T), RS1000015616 (1:222886127 A>G), RS1000021399 (1:222933901 T>A), RS1000032941 (1:222883280 T>C), RS1000046299 (1:222976154 G>A), RS1000059953 (1:222835296 T>C), RS1000077583 (1:222975964 A>C,G), RS1000088733 (1:222885870 A>G), RS1000090981 (1:222930758 A>G), RS1000117581 (1:222913294 A>T), RS1000139134 (1:222923327 T>C), RS1000169492 (1:222876186 T>C), RS1000183390 (1:222829180 G>C), RS1000187227 (1:222873328 T>A,G), RS1000195111 (1:222875769 G>A,C,T)
Disease associations
OMIM: gene MIM:607502 | disease phenotypes: MIM:621143, MIM:610828, MIM:236100
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| holoprosencephaly | Strong | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| holoprosencephaly | Limited | AD |
Mondo (6): microform holoprosencephaly (MONDO:0017219), esophageal atresia (MONDO:0001044), holoprosencephaly 10 (MONDO:0976262), holoprosencephaly 7 (MONDO:0012562), lobar holoprosencephaly (MONDO:0019756), holoprosencephaly (MONDO:0016296)
Orphanet (3): Microform holoprosencephaly (Orphanet:280200), Holoprosencephaly (Orphanet:2162), Lobar holoprosencephaly (Orphanet:93924)
HPO phenotypes
115 total (30 of 115 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000062 | Ambiguous genitalia |
| HP:0000104 | Renal agenesis |
| HP:0000119 | Abnormality of the genitourinary system |
| HP:0000161 | Median cleft upper lip |
| HP:0000175 | Cleft palate |
| HP:0000193 | Bifid uvula |
| HP:0000202 | Orofacial cleft |
| HP:0000218 | High palate |
| HP:0000238 | Hydrocephalus |
| HP:0000252 | Microcephaly |
| HP:0000256 | Macrocephaly |
| HP:0000322 | Short philtrum |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000446 | Narrow nasal bridge |
| HP:0000453 | Choanal atresia |
| HP:0000457 | Depressed nasal ridge |
| HP:0000463 | Anteverted nares |
| HP:0000478 | Abnormality of the eye |
| HP:0000486 | Strabismus |
| HP:0000601 | Hypotelorism |
| HP:0000612 | Iris coloboma |
| HP:0000708 | Atypical behavior |
| HP:0000716 | Depression |
| HP:0000736 | Short attention span |
| HP:0000737 | Irritability |
| HP:0000739 | Anxiety |
| HP:0000741 | Apathy |
| HP:0000772 | Abnormal rib morphology |
| HP:0000818 | Abnormality of the endocrine system |
| HP:0000821 | Hypothyroidism |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006979_902 | Heel bone mineral density | 5.000000e-13 |
| GCST010579_3 | Response to antiepileptic mood-stabilizing treatment in bipolar disorder | 2.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009270 | heel bone mineral density |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D004933 | Esophageal Atresia | C06.198.330; C06.405.117.260; C16.131.314.330 |
| D016142 | Holoprosencephaly | C05.660.207.410; C10.500.034.875; C16.131.077.410; C16.131.260.380; C16.131.621.207.410; C16.131.666.034.875; C16.320.180.380 |
| C563660 | Holoprosencephaly 7 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
2 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs17535305 | DISP1 | 0.00 | 0 | ||
| rs61840266 | DISP1 | 0.00 | 0 |
CTD chemical–gene interactions
29 total (human), top 29 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, affects cotreatment | 5 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| Benzo(a)pyrene | affects methylation, increases methylation, increases mutagenesis | 2 |
| Nickel | decreases expression | 2 |
| Aflatoxin B1 | decreases methylation, increases methylation | 2 |
| FR900359 | increases phosphorylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | increases expression | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| ferrous chloride | decreases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| entinostat | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| ICG 001 | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| PCI 5002 | affects cotreatment, increases expression | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Carbamazepine | affects expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Ethyl Methanesulfonate | increases expression | 1 |
| Formaldehyde | increases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Testosterone | affects cotreatment, increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Urethane | increases expression | 1 |
| Zinc | affects cotreatment, increases expression | 1 |
| Cyclosporine | increases expression | 1 |
| Gold Compounds | increases expression | 1 |
Clinical trials (associated diseases)
36 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00226044 | PHASE3 | COMPLETED | Rectal and Oral Omeprazole Treatment of Reflux Disease in Infants. |
| NCT03127345 | PHASE2 | WITHDRAWN | Omega 3 Fatty Acid Treatment for Pediatric Musculoskeletal Health |
| NCT00005016 | Not specified | COMPLETED | Study of the Experiences and Needs of Parents Continuing a Pregnancy Following a Prenatal Diagnosis of Holopresencephaly |
| NCT00088426 | Not specified | COMPLETED | Clinical and Genetic Studies on Holoprosencephaly |
| NCT00645645 | Not specified | COMPLETED | A Study of the Genetic Analysis of Brain Disorders |
| NCT04691414 | Not specified | COMPLETED | Retrospective Study Using Next Generation Sequencing (NGS) on Biological Samples to Improve Genetic Counseling for Patients With Previously Explored Craniofacial Midline Defects. |
| NCT02033772 | Not specified | COMPLETED | Prospective Data Collection of Patients < 6 Months of Age Undergoing Thoracoscopic Surgery |
| NCT02466451 | Not specified | COMPLETED | Study in Children With the Diagnosis of Congenital Diaphragmatic Hernia (CDH) and Oesophageal Atresia (EA) |
| NCT02525705 | Not specified | COMPLETED | Dumping Syndrome After Operation of Esophageal Atresia Type III |
| NCT02883725 | Not specified | COMPLETED | National Register of Oesophageal Atresia |
| NCT03023865 | Not specified | UNKNOWN | Individualized Management for Long Gap Esophageal Atresia |
| NCT03415893 | Not specified | COMPLETED | High-resolution Esophageal Manometry |
| NCT03455881 | Not specified | UNKNOWN | Phenotypic and Genetic Assessment of Tracheal and Esophageal Birth Defects in Patients |
| NCT03615495 | Not specified | COMPLETED | Flourish™ Pediatric Esophageal Atresia |
| NCT03619408 | Not specified | UNKNOWN | Management of Esophagitis Following Repair of Esophageal Atresia |
| NCT03666767 | Not specified | COMPLETED | Management and Outcomes of Congenital Anomalies in Low-, Middle- and High-Income Countries |
| NCT03730454 | Not specified | ACTIVE_NOT_RECRUITING | Transanastomotic Tube for Proximal Esophageal Atresia With Distal Tracheoesophageal Fistula Repair |
| NCT03767673 | Not specified | UNKNOWN | Cardiorespiratory Performance and Pulmonary Microbiome in Patients After Repair of Esophageal Atresia |
| NCT03999008 | Not specified | UNKNOWN | Oral Viscous Budesonide in Anastomotic Stricture After Esophageal Atresia Repair (OVB in EA) |
| NCT04072419 | Not specified | UNKNOWN | Application of Enhanced Recovery After Surgery for Congenital Esophageal Atresia During Perioperative Period |
| NCT04136795 | Not specified | UNKNOWN | Evaluation of the Respiratory Impact After Conventional or Minimally Invasive Esophageal Atresia Surgery |
| NCT04259528 | Not specified | UNKNOWN | Endoscopic Ultrasound Findings in Esophageal Atresia Following Surgical Repair |
| NCT04522193 | Not specified | RECRUITING | Dumping Syndrome and Esophageal Atresia |
| NCT04901546 | Not specified | COMPLETED | Esophageal Atresia: a Natural Experiment of the Effects of Oral Inoculation on the Gut Microbiome |
| NCT04932746 | Not specified | COMPLETED | The Effect of Dexmedetomidine on Oxygen During One Lung Ventilation in Pediatric Surgery. |
| NCT05129930 | Not specified | COMPLETED | Fluid Overload and Pulmonary Function |
| NCT05527873 | Not specified | COMPLETED | Respiratory Complications of Operated Esophageal Atresia in Children |
| NCT05995171 | Not specified | RECRUITING | Long Term Outcome of Easophageal Atresia : Transmics Profiles in Adolescence |
| NCT06073158 | Not specified | COMPLETED | Molecular Signatures of Esophageal Atresia |
| NCT06208449 | Not specified | UNKNOWN | Robotic Versus Thoracoscopy Versus Thoracotomy Repair for Congenital Esophageal Atresia |
| NCT06335862 | Not specified | ENROLLING_BY_INVITATION | Primary Posterior Tracheopexy Prevents Tracheal Collapse |
| NCT06731855 | Not specified | RECRUITING | An Exploratory Physiological Study of Post-operative Recovery in Surgical Neonates and Dimethylarginine:Arginine Levels |
| NCT06860919 | Not specified | RECRUITING | Prospective Evaluation of the Results of Multidisciplinary Follow-up After a Transitional Consultation for Esophageal Atresia |
| NCT06975982 | Not specified | RECRUITING | Symptoms, Pulmonary Function, Muscle Strength, Exercise Capacity, and Frailty in Esophageal Atresia vs. Healthy Peers |
| NCT07100379 | Not specified | RECRUITING | Balloon Inflation Time for Esophageal Strictures (BITES): A Randomized Multi-Center Study |
| NCT07210736 | Not specified | NOT_YET_RECRUITING | Brazilian Multicenter Study on Esophageal Atresia |
Related Atlas pages
- Associated diseases: holoprosencephaly
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): esophageal atresia, holoprosencephaly, holoprosencephaly 10, holoprosencephaly 7, lobar holoprosencephaly, microform holoprosencephaly