DLD
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Also known as DLDHE3OGDC-E3
Summary
DLD (dihydrolipoamide dehydrogenase, HGNC:2898) is a protein-coding gene on chromosome 7q31.1, encoding Dihydrolipoyl dehydrogenase, mitochondrial (P09622). Lipoamide dehydrogenase is a component of the glycine cleavage system as well as an E3 component of three alpha-ketoacid dehydrogenase complexes (pyruvate-, alpha-ketoglutarate-, and branched-chain amino acid-dehydrogenase complex). It is a selective cancer dependency (DepMap: 22.4% of cell lines).
This gene encodes a member of the class-I pyridine nucleotide-disulfide oxidoreductase family. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct functions. In homodimeric form, the encoded protein functions as a dehydrogenase and is found in several multi-enzyme complexes that regulate energy metabolism. However, as a monomer, this protein can function as a protease. Mutations in this gene have been identified in patients with E3-deficient maple syrup urine disease and lipoamide dehydrogenase deficiency. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 1738 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Leigh syndrome (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 9
- Clinical variants (ClinVar): 746 total — 39 pathogenic, 87 likely-pathogenic
- Phenotypes (HPO): 43
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 22.4% of screened cell lines
- MANE Select transcript:
NM_000108
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2898 |
| Approved symbol | DLD |
| Name | dihydrolipoamide dehydrogenase |
| Location | 7q31.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DLDH, E3, OGDC-E3 |
| Ensembl gene | ENSG00000091140 |
| Ensembl biotype | protein_coding |
| OMIM | 238331 |
| Entrez | 1738 |
Gene structure
Transcript identifiers
Ensembl transcripts: 23 — 13 protein_coding, 4 nonsense_mediated_decay, 4 retained_intron, 2 protein_coding_CDS_not_defined
ENST00000205402, ENST00000415325, ENST00000417551, ENST00000437604, ENST00000440410, ENST00000450038, ENST00000451081, ENST00000453354, ENST00000460577, ENST00000478414, ENST00000485066, ENST00000489184, ENST00000494441, ENST00000880447, ENST00000880448, ENST00000880449, ENST00000880450, ENST00000880451, ENST00000880452, ENST00000924908, ENST00000924909, ENST00000924910, ENST00000957323
RefSeq mRNA: 4 — MANE Select: NM_000108
NM_000108, NM_001289750, NM_001289751, NM_001289752
CCDS: CCDS5749, CCDS78268, CCDS78269
Canonical transcript exons
ENST00000205402 — 14 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001876887 | 107891183 | 107891289 |
| ENSE00003490343 | 107906267 | 107906368 |
| ENSE00003503135 | 107904958 | 107905058 |
| ENSE00003506893 | 107915506 | 107915696 |
| ENSE00003517425 | 107916794 | 107916964 |
| ENSE00003528162 | 107917273 | 107917462 |
| ENSE00003533170 | 107905361 | 107905504 |
| ENSE00003556190 | 107919010 | 107919099 |
| ENSE00003594323 | 107917924 | 107918061 |
| ENSE00003603060 | 107901738 | 107901817 |
| ENSE00003619167 | 107893200 | 107893278 |
| ENSE00003623156 | 107902325 | 107902393 |
| ENSE00003624603 | 107903478 | 107903547 |
| ENSE00003643561 | 107919194 | 107921198 |
Expression profiles
Bgee: expression breadth ubiquitous, 301 present calls, max score 99.46.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 38.5458 / max 1130.1496, expressed in 1810 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 80477 | 38.5458 | 1810 |
Top tissues by expression
301 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| heart right ventricle | UBERON:0002080 | 99.46 | gold quality |
| biceps brachii | UBERON:0001507 | 98.95 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 98.79 | gold quality |
| diaphragm | UBERON:0001103 | 98.76 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 98.69 | gold quality |
| vastus lateralis | UBERON:0001379 | 98.52 | gold quality |
| body of tongue | UBERON:0011876 | 98.43 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 98.35 | gold quality |
| jejunal mucosa | UBERON:0000399 | 98.26 | gold quality |
| colonic mucosa | UBERON:0000317 | 98.25 | gold quality |
| rectum | UBERON:0001052 | 98.24 | gold quality |
| adrenal tissue | UBERON:0018303 | 98.23 | gold quality |
| quadriceps femoris | UBERON:0001377 | 98.13 | gold quality |
| cardiac ventricle | UBERON:0002082 | 98.10 | gold quality |
| heart left ventricle | UBERON:0002084 | 98.07 | gold quality |
| triceps brachii | UBERON:0001509 | 97.91 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 97.84 | gold quality |
| muscle organ | UBERON:0001630 | 97.83 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 97.83 | gold quality |
| right adrenal gland | UBERON:0001233 | 97.82 | gold quality |
| gastrocnemius | UBERON:0001388 | 97.78 | gold quality |
| muscle of leg | UBERON:0001383 | 97.74 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 97.64 | gold quality |
| jejunum | UBERON:0002115 | 97.62 | gold quality |
| apex of heart | UBERON:0002098 | 97.60 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 97.40 | gold quality |
| left adrenal gland | UBERON:0001234 | 97.35 | gold quality |
| duodenum | UBERON:0002114 | 97.31 | gold quality |
| gluteal muscle | UBERON:0002000 | 97.22 | gold quality |
| adrenal gland | UBERON:0002369 | 97.20 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-53 | no | 65.77 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AP1, EGR1, ETS1, FOS, GABPA, GLI3, HIF1A, HR, MYOD1, NEUROD1, NEUROG3, PAX1, RNF2, TBX15, TCF3, ZFPM1, ZFPM2
miRNA regulators (miRDB)
110 targeting DLD, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-4650-5P | 99.98 | 64.69 | 999 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548AH-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AM-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AQ-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-515-5P | 99.92 | 69.82 | 2343 |
| HSA-MIR-519E-5P | 99.92 | 69.62 | 2358 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 22.4% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 26)
- the E3 binding protein component of the pyruvate dehydrogenase complex appear to be a rare cause of pyruvate dehydrogenase deficiency (PMID:11935326)
- Activity of human dihydrolipoamide dehydrogenase is reduced by mutation at threonine-44 of FAD-binding region to valine. (PMID:12297006)
- model of the pyruvate dehydrogenase complex formed by E2 and E2 plus the E3-binding protein and binding of the E1 and E3 components (PMID:14638692)
- A c.1444A>G substitution in E3 exon 13, predictive of a p.R482G (or R447G in the processed gene product) substitution in a highly conserved domain of the protein was found. (PMID:15712224)
- Asparagine-473 residue is important for the catalytic function of dihydrolipoamide dehydrogenase. (PMID:15826505)
- the disease-causing mutations of E3 occur at three locations in the human enzyme: the dimer interface, the active site, and the FAD and NAD(+)-binding sites (PMID:15946682)
- specificity of pairing for human E3BP with E3 from its subcomplex structure to be most likely due to conformational rigidity of the binding fragment of the E3-binding domain of E3BP and its exquisite amino acid match with the E3 target interface (PMID:16263718)
- dihydrolipoamide dehydrogenase (PMID:16442803)
- The conservation of the Ile-51 residue with Ala using site-directed mutagenesis in human Dihydrolipoamide dehydrogenase(E3) was very important to the efficient catalytic function of the enzyme. (PMID:16584639)
- These results suggest that N286 and D320 play a role in the catalytic function of the E3. (PMID:17171578)
- Certain DLD mutations can simultaneously induce the loss of a primary metabolic activity and the gain of a moonlighting proteolytic activity thus contributing to the metabolic derangement associated with DLD deficiency. (PMID:17404228)
- Human, mouse, and pig Dld has moonlighting function as a protease in addition to its canonical function as a a dehydrogenase. (PMID:17404228)
- kinetic studies suggest that T148 is not important to E3 catalytic function and R281 plays a role in the catalytic function of E3 (PMID:17960497)
- This protein has been found differentially expressed in the Wernicke’s Area from patients with schizophrenia. (PMID:19405953)
- Case Report: novel mutation in the DLD interface giving rise to DLD deficiency. (PMID:20652410)
- Structural and thermodynamic basis for weak interactions between dihydrolipoamide dehydrogenase and subunit-binding domain of the branched-chain alpha-ketoacid dehydrogenase complex. (PMID:21543315)
- the cryptic activities of DLD promote oxidative damage to neighboring molecules and thus contribute to the clinical severity of DLD mutations (PMID:21930696)
- ATP consumption is demonstrated in respiration-impaired isolated and in situ neuronal somal mitochondria from transgenic mice that exhibit a 20-48% decrease in alpha-ketoglutarate dehydrogenase activity. (PMID:23475850)
- This molecular dynamics study proposes the structural changes that may lead to the modulation in reactive oxygen species generation by pathogenic mutants of human dihydrolipoamide dehydrogenase. (PMID:24012808)
- IgA autoantibody against DLD could be a novel diagnostic marker for endometrial cancer. (PMID:25202086)
- Mitochondrial dihydrolipoamide dehydrogenase is upregulated in response to the brain intermittent hypoxic preconditioning. (PMID:26078703)
- study found that individuals infected with HBV withwith basal core promoter (BCP) double mutations (A1762T, G1764A)have lower concentrations of serum DLD than those with the wild-type BCP (PMID:27303803)
- Molecular characterization of dihydrolipoamide dehydrogenase binding sites to titanium dioxide has been reported. (PMID:28247484)
- Dihydrolipoamide dehydrogenase regulates cystine deprivation-induced ferroptosis in head and neck cancer. (PMID:31931284)
- Lipoamide dehydrogenase (LADH) deficiency: medical perspectives of the structural and functional characterization of LADH and its pathogenic variants. (PMID:36842090)
- Pan-Cancer Analysis of the Cuproptosis-Related Gene DLD. (PMID:38077227)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | dldh | ENSDARG00000008785 |
| mus_musculus | Dld | ENSMUSG00000020664 |
| rattus_norvegicus | Dld | ENSRNOG00000006364 |
| drosophila_melanogaster | CG7430 | FBGN0036762 |
| caenorhabditis_elegans | WBGENE00010794 |
Paralogs (7): GSR (ENSG00000104687), PYROXD1 (ENSG00000121350), AIFM1 (ENSG00000156709), AIFM3 (ENSG00000183773), TXNRD2 (ENSG00000184470), TXNRD3 (ENSG00000197763), TXNRD1 (ENSG00000198431)
Protein
Protein identifiers
Dihydrolipoyl dehydrogenase, mitochondrial — P09622 (reviewed: P09622)
Alternative names: Dihydrolipoamide dehydrogenase, Glycine cleavage system L protein
All UniProt accessions (6): P09622, A0A024R713, E9PEX6, F2Z2E3, F8WDM5, F8WDY5
UniProt curated annotations — full annotation on UniProt →
Function. Lipoamide dehydrogenase is a component of the glycine cleavage system as well as an E3 component of three alpha-ketoacid dehydrogenase complexes (pyruvate-, alpha-ketoglutarate-, and branched-chain amino acid-dehydrogenase complex). The 2-oxoglutarate dehydrogenase complex is mainly active in the mitochondrion. A fraction of the 2-oxoglutarate dehydrogenase complex also localizes in the nucleus and is required for lysine succinylation of histones: associates with KAT2A on chromatin and provides succinyl-CoA to histone succinyltransferase KAT2A. In monomeric form may have additional moonlighting function as serine protease. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction. The pyruvate dehydrogenase (PDH) complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2), and thereby links cytoplasmic glycolysis and the mitochondrial tricarboxylic acid (TCA) cycle. It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and dihydrolipoamide dehydrogenase (E3). The E3 subunit catalyzes reoxidation of the dihydrolipoyl moiety on lipoyl-bearing domains (LBDs) of E2 with NAD+ as the ultimate electron acceptor.
Subunit / interactions. Homodimer. Part of the multimeric pyruvate dehydrogenase (PDH) complex that contains multiple copies of pyruvate dehydrogenase (subunits PDHA (PDHA1 or PDHA2) and PDHB, E1), dihydrolipoamide acetyltransferase (DLAT, E2) and lipoamide dehydrogenase (DLD, E3). These subunits are bound to an inner core composed of about 48 DLAT and 12 PDHX molecules (by non covalent bonds). The 2-oxoglutarate dehydrogenase complex is composed of OGDH (2-oxoglutarate dehydrogenase; E1), DLST (dihydrolipoamide succinyltransferase; E2), DLD (dihydrolipoamide dehydrogenase; E3) and the assembly factor KGD4. It contains multiple copies of the three enzymatic components (E1, E2 and E3). In the nucleus, the 2-oxoglutarate dehydrogenase complex associates with KAT2A. Interacts with PDHX.
Subcellular location. Mitochondrion matrix. Nucleus. Cell projection. Cilium. Flagellum. Cytoplasmic vesicle. Secretory vesicle. Acrosome.
Post-translational modifications. Tyrosine phosphorylated.
Disease relevance. Dihydrolipoamide dehydrogenase deficiency (DLDD) [MIM:246900] An autosomal recessive metabolic disorder characterized biochemically by a combined deficiency of the branched-chain alpha-keto acid dehydrogenase complex (BCKDC), pyruvate dehydrogenase complex (PDC), and alpha-ketoglutarate dehydrogenase complex (KGDC). Clinically, affected individuals have lactic acidosis and neurologic deterioration due to sensitivity of the central nervous system to defects in oxidative metabolism. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Disruption of native heterodimer state inhibits primary dihydrolipoamide dehydrogenase activity and induces serine protease activity.
Cofactor. Binds 1 FAD per subunit.
Miscellaneous. The active site is a redox-active disulfide bond.
Similarity. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P09622-1 | 1 | yes |
| P09622-2 | 2 | |
| P09622-3 | 3 |
RefSeq proteins (4): NP_000099, NP_001276679, NP_001276680, NP_001276681 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001100 | Pyr_nuc-diS_OxRdtase | Family |
| IPR004099 | Pyr_nucl-diS_OxRdtase_dimer | Domain |
| IPR006258 | Lipoamide_DH | Family |
| IPR012999 | Pyr_OxRdtase_I_AS | Active_site |
| IPR016156 | FAD/NAD-linked_Rdtase_dimer_sf | Homologous_superfamily |
| IPR023753 | FAD/NAD-binding_dom | Domain |
| IPR036188 | FAD/NAD-bd_sf | Homologous_superfamily |
| IPR050151 | Class-I_Pyr_Nuc-Dis_Oxidored | Family |
Pfam: PF02852, PF07992
Enzyme classification (BRENDA):
- EC 1.2.1.104 — pyruvate dehydrogenase system (BRENDA: 46 organisms, 32 substrates, 100 inhibitors, 83 Km, 12 kcat entries)
- EC 1.2.1.105 — 2-oxoglutarate dehydrogenase system (BRENDA: 28 organisms, 44 substrates, 119 inhibitors, 83 Km, 16 kcat entries)
- EC 1.4.1.27 — glycine cleavage system (BRENDA: 15 organisms, 4 substrates, 5 inhibitors, 6 Km, 0 kcat entries)
- EC 1.8.1.4 — dihydrolipoyl dehydrogenase (BRENDA: 77 organisms, 163 substrates, 92 inhibitors, 268 Km, 86 kcat entries)
Substrate kinetics (BRENDA)
57 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| NAD+ | 0.024–4.1 | 76 |
| DIHYDROLIPOAMIDE | 0.0107–43.6 | 73 |
| 2-OXOGLUTARATE | 0.0025–10.1 | 50 |
| PYRUVATE | 0.0002–1 | 44 |
| NADH | 0.0032–84 | 37 |
| LIPOAMIDE | 0.05–16 | 26 |
| NAD+ | 0.01–0.27 | 14 |
| COA | 0.0005–0.61 | 12 |
| COA | 0.0032–0.075 | 11 |
| NAD+ | 0.0249–0.3 | 11 |
| 2-OXOVALERATE | 0.0063–0.0163 | 5 |
| FORMALDOXIME | 2.73–17.82 | 4 |
| GLYCEROL TRINITRATE | 0.9–16.93 | 4 |
| THIAMINE DIPHOSPHATE | 0.0016–0.05 | 3 |
| 2,6-DICHLOROPHENOLINDOPHENOL | 0.015–0.12 | 3 |
Catalyzed reactions (Rhea), 1 shown:
- N(6)-[(R)-dihydrolipoyl]-L-lysyl-[protein] + NAD(+) = N(6)-[(R)-lipoyl]-L-lysyl-[protein] + NADH + H(+) (RHEA:15045)
UniProt features (118 total): strand 25, modified residue 25, helix 18, mutagenesis site 15, sequence variant 13, binding site 10, sequence conflict 3, site 2, splice variant 2, transit peptide 1, chain 1, turn 1, active site 1, disulfide bond 1
Structure
Experimental structures (PDB)
17 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6I4R | X-RAY DIFFRACTION | 1.44 |
| 6I4P | X-RAY DIFFRACTION | 1.6 |
| 6I4Q | X-RAY DIFFRACTION | 1.75 |
| 6I4S | X-RAY DIFFRACTION | 1.75 |
| 6HG8 | X-RAY DIFFRACTION | 1.76 |
| 6I4T | X-RAY DIFFRACTION | 1.82 |
| 5J5Z | X-RAY DIFFRACTION | 1.84 |
| 6I4U | X-RAY DIFFRACTION | 1.84 |
| 1ZMD | X-RAY DIFFRACTION | 2.08 |
| 2F5Z | X-RAY DIFFRACTION | 2.18 |
| 5NHG | X-RAY DIFFRACTION | 2.27 |
| 6I4Z | X-RAY DIFFRACTION | 2.34 |
| 3RNM | X-RAY DIFFRACTION | 2.4 |
| 7PSC | X-RAY DIFFRACTION | 2.44 |
| 1ZMC | X-RAY DIFFRACTION | 2.53 |
| 1ZY8 | X-RAY DIFFRACTION | 2.59 |
| 7ZYT | X-RAY DIFFRACTION | 2.89 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P09622-F1 | 93.69 | 0.92 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 448 (important for interaction with pdhx and activity of multienzyme pyruvate dehydrogenase complex); 473 (important for interaction with pdhx and activity of multienzyme pyruvate dehydrogenase complex); 487 (proton acceptor)
Ligand- & substrate-binding residues (10): 314; 355; 361–364; 71–80; 89; 154; 183–185; 220–227; 243; 278
Post-translational modifications (25): 66, 66, 104, 104, 122, 122, 132, 132, 143, 143, 159, 166, 273, 277, 285, 297, 346, 410, 410, 417 …
Disulfide bonds (1): 80–85
Mutagenesis-validated functional residues (15):
| Position | Phenotype |
|---|---|
| 89 | abolishes dihydrolipoyl dehydrogenase activity. does not affect interaction with pdhx. |
| 383 | reduces dihydrolipoyl dehydrogenase activity. |
| 448 | reduces interaction with pdhx. inhibits multienzyme pyruvate dehydrogenase complex activity. does not affect dihydrolipo |
| 448 | does not affect dihydrolipoyl dehydrogenase activity. |
| 466 | decreases dehydrogenase activity. loss of proteolytic activity. |
| 473 | reduces interaction with pdhx. inhibits multienzyme pyruvate dehydrogenase complex activity. does not affect dihydrolipo |
| 473 | does not affect dihydrolipoyl dehydrogenase activity. |
| 482 | does not affect dihydrolipoyl dehydrogenase activity. |
| 482 | does not affect interaction with pdhx. |
| 485 | loss of dehydrogenase activity. increases proteolytic activity. |
| 491 | loss of proteolytic activity. does not affect dehydrogenase activity. |
| 492 | reduces dihydrolipoyl dehydrogenase activity. does not affect interaction with pdhx. |
| 505 | reduces dihydrolipoyl dehydrogenase activity. does not affect interaction with pdhx. |
Function
Pathways and Gene Ontology
Reactome pathways
13 pathways
| ID | Pathway |
|---|---|
| R-HSA-204174 | Regulation of pyruvate dehydrogenase (PDH) complex |
| R-HSA-5362517 | Signaling by Retinoic Acid |
| R-HSA-6783984 | Glycine degradation |
| R-HSA-70895 | Branched-chain amino acid catabolism |
| R-HSA-9837999 | Mitochondrial protein degradation |
| R-HSA-9853506 | OGDH complex synthesizes succinyl-CoA from 2-OG |
| R-HSA-9858328 | OADH complex synthesizes glutaryl-CoA from 2-OA |
| R-HSA-9859138 | BCKDH synthesizes BCAA-CoA from KIC, KMVA, KIV |
| R-HSA-9861559 | PDH complex synthesizes acetyl-CoA from PYR |
| R-HSA-9865113 | Loss-of-function mutations in DBT cause MSUD2 |
| R-HSA-9907570 | Loss-of-function mutations in DLD cause MSUD3/DLDD |
| R-HSA-9912481 | Branched-chain ketoacid dehydrogenase kinase deficiency |
| R-HSA-9912529 | H139Hfs13* PPM1K causes a mild variant of MSUD |
MSigDB gene sets: 342 (showing top):
TGCGCANK_UNKNOWN, GOCC_SECRETORY_GRANULE, GOBP_ALPHA_AMINO_ACID_METABOLIC_PROCESS, MORF_RAD21, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, MORF_HDAC2, GOBP_NUCLEOSIDE_PHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_MALE_GAMETE_GENERATION, KEGG_GLYCOLYSIS_GLUCONEOGENESIS, GOBP_MONOCARBOXYLIC_ACID_METABOLIC_PROCESS, GOBP_ACETYL_COA_METABOLIC_PROCESS, MORF_PSMC2, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, KEGG_VALINE_LEUCINE_AND_ISOLEUCINE_DEGRADATION, GOBP_DICARBOXYLIC_ACID_METABOLIC_PROCESS
GO Biological Process (12): pyruvate decarboxylation to acetyl-CoA (GO:0006086), 2-oxoglutarate metabolic process (GO:0006103), mitochondrial electron transport, NADH to ubiquinone (GO:0006120), proteolysis (GO:0006508), gastrulation (GO:0007369), branched-chain amino acid catabolic process (GO:0009083), obsolete L-lysine catabolic process to acetyl-CoA (GO:0019474), regulation of membrane potential (GO:0042391), sperm capacitation (GO:0048240), 2-oxoglutarate decarboxylation to succinyl-CoA (GO:0120551), branched-chain alpha-keto acid decarboxylation to branched-chain acyl-CoA (GO:0120552), tricarboxylic acid cycle (GO:0006099)
GO Molecular Function (6): dihydrolipoyl dehydrogenase (NADH) activity (GO:0004148), flavin adenine dinucleotide binding (GO:0050660), nucleotide binding (GO:0000166), protein binding (GO:0005515), oxidoreductase activity (GO:0016491), oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor (GO:0016668)
GO Cellular Component (14): nucleus (GO:0005634), mitochondrion (GO:0005739), mitochondrial matrix (GO:0005759), motile cilium (GO:0031514), acrosomal matrix (GO:0043159), oxoglutarate dehydrogenase complex (GO:0045252), pyruvate dehydrogenase complex (GO:0045254), branched-chain alpha-ketoacid dehydrogenase complex (GO:0160157), oxoadipate dehydrogenase complex (GO:0160167), acrosomal vesicle (GO:0001669), cytoplasm (GO:0005737), cilium (GO:0005929), cytoplasmic vesicle (GO:0031410), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-11 pathways:
| Category | Pathways |
|---|---|
| Maple Syrup Urine Disease | 3 |
| Regulation of pyruvate metabolism | 1 |
| Signaling by Nuclear Receptors | 1 |
| Glyoxylate metabolism and glycine degradation | 1 |
| Metabolism of amino acids and derivatives | 1 |
| Metabolism of proteins | 1 |
| Citric acid cycle (TCA cycle) | 1 |
| Lysine catabolism | 1 |
| Branched-chain amino acid catabolism | 1 |
| Pyruvate metabolism | 1 |
| Diseases of branched-chain amino acid catabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| alpha-ketoacid dehydrogenase complex | 4 |
| cellular anatomical structure | 3 |
| transferase complex | 3 |
| aerobic respiration | 2 |
| intracellular membrane-bounded organelle | 2 |
| cytoplasm | 2 |
| dihydrolipoyl dehydrogenase (NADH) activity | 1 |
| pyruvate dehydrogenase (acetyl-transferring) activity | 1 |
| dihydrolipoyllysine-residue acetyltransferase activity | 1 |
| acetyl-CoA biosynthetic process | 1 |
| pyruvate metabolic process | 1 |
| dicarboxylic acid metabolic process | 1 |
| aerobic electron transport chain | 1 |
| mitochondrial ATP synthesis coupled electron transport | 1 |
| protein metabolic process | 1 |
| ectoderm formation | 1 |
| endoderm formation | 1 |
| mesoderm formation | 1 |
| embryonic morphogenesis | 1 |
| amino acid catabolic process | 1 |
| branched-chain amino acid metabolic process | 1 |
| carboxylic acid catabolic process | 1 |
| monoatomic ion transmembrane transport | 1 |
| regulation of biological quality | 1 |
| developmental process involved in reproduction | 1 |
| spermatid development | 1 |
| cellular process involved in reproduction in multicellular organism | 1 |
| cell maturation | 1 |
| tricarboxylic acid cycle | 1 |
| 2-oxoglutarate metabolic process | 1 |
| succinyl-CoA biosynthetic process | 1 |
| branched-chain amino acid catabolic process | 1 |
| carboxylic acid metabolic process | 1 |
| fatty-acyl-CoA metabolic process | 1 |
| primary metabolic process | 1 |
| oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor | 1 |
| nucleotide binding | 1 |
| anion binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
Protein interactions and networks
STRING
4304 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DLD | PDHX | O00330 | 995 |
| DLD | OGDH | Q02218 | 995 |
| DLD | PDHA1 | P08559 | 991 |
| DLD | DLAT | P10515 | 987 |
| DLD | DLST | P36957 | 980 |
| DLD | BCKDHA | P12694 | 971 |
| DLD | BCKDHB | P21953 | 949 |
| DLD | AMT | P48728 | 900 |
| DLD | PDHB | P11177 | 891 |
| DLD | DBT | P11182 | 861 |
| DLD | GCSH | P23434 | 860 |
| DLD | AASDHPPT | Q9NRN7 | 814 |
| DLD | PDHA2 | P29803 | 798 |
| DLD | GLDC | P23378 | 792 |
| DLD | DHTKD1 | Q96HY7 | 759 |
IntAct
104 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PDHX | DLD | psi-mi:“MI:0407”(direct interaction) | 0.880 |
| DLD | PDHX | psi-mi:“MI:0914”(association) | 0.880 |
| PDHX | DLD | psi-mi:“MI:0915”(physical association) | 0.880 |
| DLD | PDHX | psi-mi:“MI:0407”(direct interaction) | 0.880 |
| PPP6C | ANKRD28 | psi-mi:“MI:0914”(association) | 0.870 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| KGD4 | DLD | psi-mi:“MI:0914”(association) | 0.640 |
| ITGB1BP1 | DLD | psi-mi:“MI:0915”(physical association) | 0.560 |
| DLD | HTT | psi-mi:“MI:0915”(physical association) | 0.560 |
| DLD | PDHB | psi-mi:“MI:0914”(association) | 0.530 |
| GATA2 | BANF1 | psi-mi:“MI:0914”(association) | 0.530 |
| DLD | PRDX6 | psi-mi:“MI:0915”(physical association) | 0.500 |
| DLD | YWHAE | psi-mi:“MI:0915”(physical association) | 0.500 |
| NDUFAB1 | MIEF1 | psi-mi:“MI:0915”(physical association) | 0.490 |
| BMP2K | DLD | psi-mi:“MI:0915”(physical association) | 0.490 |
| sseJ | AGPS | psi-mi:“MI:0914”(association) | 0.460 |
| CDK1 | DLD | psi-mi:“MI:0403”(colocalization) | 0.430 |
| DLD | Nfkbie | psi-mi:“MI:0915”(physical association) | 0.400 |
| TXNDC16 | DLD | psi-mi:“MI:0915”(physical association) | 0.400 |
| TAF1 | DLD | psi-mi:“MI:0915”(physical association) | 0.400 |
| CALD1 | DLD | psi-mi:“MI:0915”(physical association) | 0.400 |
| SIRT4 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (633): DLD (Affinity Capture-MS), DLD (Affinity Capture-MS), DLD (Affinity Capture-MS), DLD (Affinity Capture-MS), DLST (Affinity Capture-MS), OGDHL (Affinity Capture-MS), OGDH (Affinity Capture-MS), HLTF (Affinity Capture-MS), PDK3 (Affinity Capture-MS), DLAT (Affinity Capture-MS), SORL1 (Affinity Capture-MS), PARS2 (Affinity Capture-MS), PDHA1 (Affinity Capture-MS), NFS1 (Affinity Capture-MS), FBXO21 (Affinity Capture-MS)
ESM2 similar proteins: B9A1H3, F1N206, O04955, O08749, O62768, O89049, P00390, P09622, P09623, P13110, P27456, P28593, P30635, P39040, P39050, P39051, P41921, P47791, P48640, P48641, P48642, P49819, P70619, P78965, P91938, Q16881, Q41219, Q43154, Q5NVA2, Q5R4B1, Q60HG3, Q6BPI1, Q6C5H4, Q6FRV2, Q6HA23, Q6P6R2, Q74ZK4, Q811C4, Q873E8, Q8CIZ7
Diamond homologs: A6V3A6, A7FD10, A8MS68, B2JZF3, B7UZU5, D0VWY5, D9J041, F1N206, F4JLP5, G0SB20, O00087, O05139, O05940, O08749, O17953, O18480, O34324, O50286, O50311, O84561, P09063, P09622, P09623, P09624, P0A0E4, P0A0E5, P0A0E6, P0A0E7, P0A0E8, P0A9P0, P0A9P1, P0A9P2, P0A9P3, P11959, P14218, P16171, P18925, P21880, P23189, P27456
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| DLD | “form complex” | OGDC | binding |
| DLD | “form complex” | PDH | binding |
| DLD | “form complex” | “Glycine cleavage system” | binding |
| RIPK3 | “up-regulates activity” | DLD | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
746 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 39 |
| Likely pathogenic | 87 |
| Uncertain significance | 178 |
| Likely benign | 338 |
| Benign | 38 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1072157 | NM_000108.5(DLD):c.1396G>T (p.Glu466Ter) | Pathogenic |
| 11966 | NM_000108.5(DLD):c.685G>T (p.Gly229Cys) | Pathogenic |
| 1353559 | NM_000108.5(DLD):c.459T>G (p.Tyr153Ter) | Pathogenic |
| 1359450 | NM_000108.5(DLD):c.783del (p.Gln262fs) | Pathogenic |
| 1392784 | NM_000108.5(DLD):c.24C>G (p.Tyr8Ter) | Pathogenic |
| 1398789 | NC_000007.13:g.(?107556049)(107558012_?)del | Pathogenic |
| 1424970 | NM_000108.5(DLD):c.1245_1249del (p.Tyr416fs) | Pathogenic |
| 1454310 | NM_000108.5(DLD):c.362del (p.Asp121fs) | Pathogenic |
| 2017211 | NM_000108.5(DLD):c.647del (p.Met216fs) | Pathogenic |
| 2028124 | NM_000108.5(DLD):c.987dup (p.Glu330Ter) | Pathogenic |
| 2030397 | NM_000108.5(DLD):c.1232_1233del (p.Glu411fs) | Pathogenic |
| 2057359 | NM_000108.5(DLD):c.1116_1117del (p.Ile372fs) | Pathogenic |
| 2069354 | NM_000108.5(DLD):c.1158C>G (p.Tyr386Ter) | Pathogenic |
| 2113162 | NM_000108.5(DLD):c.1139del (p.Gly380fs) | Pathogenic |
| 2422364 | NC_000007.13:g.(?107412489)(107559714_?)del | Pathogenic |
| 2674859 | NM_000108.5(DLD):c.184C>T (p.Gln62Ter) | Pathogenic |
| 2707325 | NM_000108.5(DLD):c.813del (p.Lys271fs) | Pathogenic |
| 2715363 | NM_000108.5(DLD):c.104del (p.Tyr35fs) | Pathogenic |
| 2744285 | NM_000108.5(DLD):c.988G>T (p.Glu330Ter) | Pathogenic |
| 2752254 | NM_000108.5(DLD):c.854C>G (p.Ser285Ter) | Pathogenic |
| 2793857 | NM_000108.5(DLD):c.529A>T (p.Lys177Ter) | Pathogenic |
| 2865401 | NM_000108.5(DLD):c.3G>A (p.Met1Ile) | Pathogenic |
| 2914891 | NM_000108.5(DLD):c.105C>A (p.Tyr35Ter) | Pathogenic |
| 2976179 | NM_000108.5(DLD):c.380del (p.Lys127fs) | Pathogenic |
| 3245827 | NC_000007.13:g.(?107531696)(107533743_?)del | Pathogenic |
| 3245828 | NC_000007.13:g.(?107542163)(107559704_?)del | Pathogenic |
| 3594235 | NM_000108.5(DLD):c.1A>C (p.Met1Leu) | Pathogenic |
| 370072 | NM_000108.5(DLD):c.104dup (p.Tyr35Ter) | Pathogenic |
| 370700 | NM_000108.5(DLD):c.112C>T (p.Gln38Ter) | Pathogenic |
| 40187 | NM_000108.5(DLD):c.1444A>G (p.Arg482Gly) | Pathogenic |
SpliceAI
2631 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:107893196:CTA:C | acceptor_loss | 1.0000 |
| 7:107893198:A:AG | acceptor_gain | 1.0000 |
| 7:107893199:G:GG | acceptor_gain | 1.0000 |
| 7:107893199:GA:G | acceptor_gain | 1.0000 |
| 7:107893199:GAGA:G | acceptor_gain | 1.0000 |
| 7:107893274:GCCGA:G | donor_gain | 1.0000 |
| 7:107893275:CCGA:C | donor_gain | 1.0000 |
| 7:107893275:CCGAG:C | donor_loss | 1.0000 |
| 7:107893276:CGA:C | donor_gain | 1.0000 |
| 7:107893276:CGAG:C | donor_loss | 1.0000 |
| 7:107893277:GA:G | donor_gain | 1.0000 |
| 7:107893277:GAG:G | donor_gain | 1.0000 |
| 7:107893277:GAGT:G | donor_loss | 1.0000 |
| 7:107893278:AG:A | donor_loss | 1.0000 |
| 7:107893279:G:C | donor_loss | 1.0000 |
| 7:107893279:G:GG | donor_gain | 1.0000 |
| 7:107893280:T:A | donor_loss | 1.0000 |
| 7:107893281:AA:A | donor_loss | 1.0000 |
| 7:107893282:AGT:A | donor_loss | 1.0000 |
| 7:107901736:A:AG | acceptor_gain | 1.0000 |
| 7:107901736:AGTT:A | acceptor_gain | 1.0000 |
| 7:107901737:G:GG | acceptor_gain | 1.0000 |
| 7:107901737:GTT:G | acceptor_gain | 1.0000 |
| 7:107901737:GTTG:G | acceptor_gain | 1.0000 |
| 7:107902323:A:AG | acceptor_gain | 1.0000 |
| 7:107902324:G:GG | acceptor_gain | 1.0000 |
| 7:107902324:GACA:G | acceptor_gain | 1.0000 |
| 7:107903466:A:AG | acceptor_gain | 1.0000 |
| 7:107903467:A:AG | acceptor_gain | 1.0000 |
| 7:107903472:CTTTA:C | acceptor_loss | 1.0000 |
AlphaMissense
3305 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:107902364:T:C | C80R | 1.000 |
| 7:107902379:T:C | C85R | 1.000 |
| 7:107902393:G:C | K89N | 1.000 |
| 7:107902393:G:T | K89N | 1.000 |
| 7:107916854:C:G | C312W | 1.000 |
| 7:107901756:T:A | V46D | 0.999 |
| 7:107901762:G:A | G48D | 0.999 |
| 7:107901768:G:A | G50D | 0.999 |
| 7:107901777:G:A | G53E | 0.999 |
| 7:107901786:C:A | A56D | 0.999 |
| 7:107901788:G:C | A57P | 0.999 |
| 7:107901789:C:A | A57D | 0.999 |
| 7:107902333:C:G | C69W | 0.999 |
| 7:107902355:G:C | G77R | 0.999 |
| 7:107902356:G:A | G77D | 0.999 |
| 7:107902356:G:T | G77V | 0.999 |
| 7:107902359:G:A | G78E | 0.999 |
| 7:107902359:G:T | G78V | 0.999 |
| 7:107902365:G:A | C80Y | 0.999 |
| 7:107902366:C:G | C80W | 0.999 |
| 7:107902368:T:G | L81W | 0.999 |
| 7:107902376:G:C | G84R | 0.999 |
| 7:107902377:G:A | G84D | 0.999 |
| 7:107902380:G:A | C85Y | 0.999 |
| 7:107902381:T:G | C85W | 0.999 |
| 7:107902386:C:A | P87H | 0.999 |
| 7:107902389:C:A | S88Y | 0.999 |
| 7:107902389:C:T | S88F | 0.999 |
| 7:107902391:A:G | K89E | 0.999 |
| 7:107903485:T:C | L92S | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000057822 (7:107897060 C>T), RS1000108310 (7:107896898 G>A), RS1000165051 (7:107912046 GTT>G,GT,GTTT,GTTTT), RS1000267401 (7:107921170 C>T), RS1000344536 (7:107914338 T>C), RS1000494779 (7:107908567 T>C), RS1000804050 (7:107896235 G>A), RS1000842625 (7:107914669 CTT>C,CT), RS1001072632 (7:107916777 C>T), RS1001090914 (7:107910168 T>G), RS1001099600 (7:107902270 G>A,T), RS1001172755 (7:107911567 T>G), RS1001173763 (7:107896403 C>A,T), RS1001316927 (7:107890920 A>G), RS1001361356 (7:107905183 C>T)
Disease associations
OMIM: gene MIM:238331 | disease phenotypes: MIM:246900, MIM:256000, MIM:312170
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| pyruvate dehydrogenase E3 deficiency | Definitive | Autosomal recessive |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Leigh syndrome | Definitive | AR |
| pyruvate dehydrogenase E3 deficiency | Definitive | AR |
Mondo (4): pyruvate dehydrogenase E3 deficiency (MONDO:0009529), Leigh syndrome (MONDO:0009723), pyruvate dehydrogenase deficiency (MONDO:0019169), lactic acidosis (MONDO:0006040)
Orphanet (4): Pyruvate dehydrogenase E3 deficiency (Orphanet:2394), Pyruvate dehydrogenase deficiency (Orphanet:765), Leigh syndrome (Orphanet:506), Pyruvate dehydrogenase E1-alpha deficiency (Orphanet:79243)
HPO phenotypes
43 total (30 of 43 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000252 | Microcephaly |
| HP:0000708 | Atypical behavior |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001254 | Lethargy |
| HP:0001257 | Spasticity |
| HP:0001263 | Global developmental delay |
| HP:0001290 | Generalized hypotonia |
| HP:0001298 | Encephalopathy |
| HP:0001332 | Dystonia |
| HP:0001399 | Hepatic failure |
| HP:0001410 | Decreased liver function |
| HP:0001508 | Failure to thrive |
| HP:0001638 | Cardiomyopathy |
| HP:0001639 | Hypertrophic cardiomyopathy |
| HP:0001942 | Metabolic acidosis |
| HP:0001943 | Hypoglycemia |
| HP:0001987 | Hyperammonemia |
| HP:0001993 | Ketoacidosis |
| HP:0002013 | Vomiting |
| HP:0002151 | Increased circulating lactate concentration |
| HP:0002240 | Hepatomegaly |
| HP:0002480 | Hepatic encephalopathy |
| HP:0002910 | Elevated circulating hepatic transaminase concentration |
| HP:0003128 | Lactic acidosis |
| HP:0003234 | Decreased circulating carnitine concentration |
| HP:0003394 | Muscle spasm |
| HP:0003542 | Increased circulating pyruvate concentration |
GWAS associations
9 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000311_10 | Ulcerative colitis | 7.000000e-06 |
| GCST000311_5 | Ulcerative colitis | 1.000000e-06 |
| GCST000311_6 | Ulcerative colitis | 9.000000e-06 |
| GCST000624_19 | Ulcerative colitis | 8.000000e-08 |
| GCST001728_4 | Ulcerative colitis | 2.000000e-26 |
| GCST004131_45 | Inflammatory bowel disease | 8.000000e-16 |
| GCST004133_10 | Ulcerative colitis | 9.000000e-21 |
| GCST005956_26 | Waist-to-hip ratio adjusted for BMI | 2.000000e-08 |
| GCST005962_48 | Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test) | 2.000000e-06 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0008007 | age at assessment |
| EFO:0008343 | sex interaction measurement |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000140 | Acidosis, Lactic | C18.452.076.176.180 |
| D007888 | Leigh Disease | C10.228.140.163.100.412; C16.320.565.189.412; C16.320.565.202.810.444; C18.452.132.100.412; C18.452.648.189.412; C18.452.648.202.810.444; C18.452.660.520 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6066969 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
57 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | increases expression, affects cotreatment, increases methylation, decreases expression | 3 |
| Resveratrol | affects cotreatment, increases expression, affects secretion | 3 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 3 |
| methacrylaldehyde | increases expression, increases abundance, affects cotreatment | 2 |
| Acrolein | affects cotreatment, increases expression, increases abundance | 2 |
| Air Pollutants | affects cotreatment, increases abundance, increases expression, decreases expression | 2 |
| Vehicle Emissions | increases methylation, decreases expression, increases abundance | 2 |
| Cadmium | decreases expression, increases abundance, increases expression | 2 |
| Ozone | affects cotreatment, increases expression, increases abundance | 2 |
| Tobacco Smoke Pollution | affects expression, decreases expression, increases expression | 2 |
| Particulate Matter | increases abundance, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| bisphenol F | increases expression | 1 |
| dicrotophos | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| oxybenzone | increases expression | 1 |
| alpha-pinene | increases abundance, affects cotreatment, increases expression | 1 |
| sodium arsenate | decreases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, increases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| ochratoxin A | increases expression | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| chromium hexavalent ion | affects expression | 1 |
| bisphenol B | increases expression | 1 |
| 3-(2-hydroxy-4-(2-methylnonan-2-yl)phenyl)cyclohexan-1-ol | increases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Acetaminophen | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5651286 | Binding | Binding affinity to human DLD incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1Q5 | Abcam HeLa DLD KO | Cancer cell line | Female |
Clinical trials (associated diseases)
41 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00202228 | PHASE4 | COMPLETED | Lactate Metabolism Study in HIV Infected Persons |
| NCT01354652 | PHASE4 | TERMINATED | Lactic Acidosis During Entecavir(ETV)Treatment |
| NCT02616484 | PHASE3 | ACTIVE_NOT_RECRUITING | Trial of Dichloroacetate in Pyruvate Dehydrogenase Complex Deficiency: |
| NCT00004490 | PHASE3 | COMPLETED | Phase III Randomized Study of Sodium Dichloroacetate in Children With Congenital Lactic Acidosis |
| NCT01721733 | PHASE2 | COMPLETED | Safety and Efficacy Study of EPI-743 in Children With Leigh Syndrome |
| NCT02352896 | PHASE2 | COMPLETED | Long-Term Safety and Efficacy Evaluation of EPI-743 in Children With Leigh Syndrome |
| NCT03747328 | PHASE2 | WITHDRAWN | ABI-009 (Nab-sirolimus) in Patients With Genetically-confirmed Leigh or Leigh-like Syndrome |
| NCT06843811 | PHASE2 | ENROLLING_BY_INVITATION | Sirolimus for Leigh Syndrome |
| NCT06990984 | PHASE2 | NOT_YET_RECRUITING | A Dose-ranging Study of TTI-0102 in Adults and Children With Leigh Syndrome Spectrum (LSS) |
| NCT03734263 | PHASE2 | COMPLETED | Use of Phenylbutyrate Therapy for Patients With Pyruvate Dehydrogenase Complex Deficiency. |
| NCT00004493 | PHASE2 | COMPLETED | Phase II Pilot Randomized Study of Sodium Dichloroacetate in Patients With Congenital Lactic Acidemia |
| NCT01973504 | PHASE2 | WITHDRAWN | Phase 2c Dose Comparison Study of MP4OX in Trauma |
| NCT02974257 | PHASE2 | TERMINATED | Thiamine vs. Placebo to Increase Oxygen Consumption After Cardiac Arrest |
| NCT02544217 | PHASE1 | COMPLETED | A Dose-escalating Clinical Trial With KH176 |
| NCT06340685 | PHASE1 | RECRUITING | Triheptanoin for Children With Primary-Specific Pyruvate Dehydrogenase Complex (PDC) Deficiency |
| NCT03122678 | PHASE1 | WITHDRAWN | Thiamine Supplementation in Patients With Septic Shock |
| NCT04378075 | PHASE2/PHASE3 | TERMINATED | A Study to Evaluate Efficacy and Safety of Vatiquinone for Treating Mitochondrial Disease in Participants With Refractory Epilepsy |
| NCT01780168 | Not specified | RECRUITING | The NIH MINI Study: Metabolism, Infection, and Immunity in Inborn Errors of Metabolism |
| NCT01793168 | Not specified | RECRUITING | Rare Disease Patient Registry & Natural History Study - Coordination of Rare Diseases at Sanford |
| NCT01803906 | Not specified | ENROLLING_BY_INVITATION | Tissue Sample Study for Mitochondrial Disorders |
| NCT03137355 | Not specified | RECRUITING | The International Registry for Leigh Syndrome |
| NCT05277363 | Not specified | WITHDRAWN | A Study of the Natural Course of SURF1 Deficiency |
| NCT05554835 | Not specified | RECRUITING | Global Registry and Natural History Study for Mitochondrial Disorders |
| NCT06967831 | Not specified | RECRUITING | Drug Repurposing for Mitochondrial Disorders Using iPSCs Derived Neural Cells |
| NCT05257005 | Not specified | UNKNOWN | Natural History Study of Pyruvate Dehydrogenase Deficiency |
| NCT06931262 | Not specified | AVAILABLE | Expanded Access Treatment Protocol With DCA for Patients With PDCD |
| NCT03466528 | PHASE2/PHASE3 | COMPLETED | Alcohol: Thiamine and or Magnesium 1 |
| NCT00004353 | Not specified | COMPLETED | Study of the Metabolism of Pyruvate and Related Problems in Patients With Lactic Acidemia |
| NCT00015015 | Not specified | COMPLETED | Dichloroacetate Kinetics, Metabolism and Toxicology |
| NCT00638040 | Not specified | WITHDRAWN | The Gene Expression Studies of the Role of Tumor Microenvironments in Tumor Progression |
| NCT00874276 | Not specified | COMPLETED | Pharmacotoxicology of Trichloroethylene Metabolites |
| NCT00942123 | Not specified | COMPLETED | Study On the Role of Mitochondrial Dysfunction in the Pathogenesis of Metformin-associated Lactic Acidosis |
| NCT01139463 | Not specified | COMPLETED | Study of Blood Lactate Levels in Patients Treated With Antipsychotics |
| NCT01873859 | Not specified | COMPLETED | Safety of Continuing Metformin in Diabetic Patients With Normal Kidney Function Receiving Contrast Media |
| NCT01901419 | Not specified | COMPLETED | Nitroglycerin Infusion During Cardiac Surgery |
| NCT03126890 | Not specified | UNKNOWN | Investigation of the Correlation Between Plasma Concentration of Linezolid Antibiotic and Treatment Response and Adverse Reactions |
| NCT03723993 | Not specified | WITHDRAWN | Remote Ischemic Preconditioning During Cardiopulmonary Bypass |
| NCT04975906 | Not specified | COMPLETED | The Threshold of Serum Anion Gap as a Screening Tool for Organic Acidosis |
| NCT05984186 | Not specified | COMPLETED | Effect of High Velocity/Hyperoxic Breathing Therapy on Blood Lactate Decline |
| NCT06727318 | Not specified | COMPLETED | Comparison of Peripheral Perfusion Indicators and Lactate Levels |
Related Atlas pages
- Associated diseases: pyruvate dehydrogenase E3 deficiency, Leigh syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): lactic acidosis, Leigh syndrome, pyruvate dehydrogenase deficiency, pyruvate dehydrogenase E3 deficiency