DLGAP1-AS4

Summary

DLGAP1-AS4 (DLGAP1 antisense RNA 4, HGNC:44333) is a long non-coding RNA gene on chromosome 18p11.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:44333
Approved symbol	DLGAP1-AS4
Name	DLGAP1 antisense RNA 4
Location	18p11.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000263878
Ensembl biotype	lncRNA
Entrez	101410534
RNAcentral	URS00005527E9 — lncRNA, 757 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000582054, ENST00000652891, ENST00000661068, ENST00000662697, ENST00000662752, ENST00000662868, ENST00000667972, ENST00000668864, ENST00000767594, ENST00000767595, ENST00000767596, ENST00000767597, ENST00000767598, ENST00000767599, ENST00000767600, ENST00000767601

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000582054 — 4 exons

Exon	Start	End
ENSE00002701536	3995217	3995349
ENSE00002720997	3995608	3995716
ENSE00002724911	3993091	3993202
ENSE00004127186	4013624	4014065

Expression profiles

Bgee: expression breadth ubiquitous, 104 present calls, max score 90.58.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 1.1471 / max 258.3651, expressed in 65 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
169234	0.7598	51
169233	0.3203	51
169231	0.0447	6
169232	0.0223	1

Top tissues by expression

104 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
superior frontal gyrus	UBERON:0002661	90.58	gold quality
primary visual cortex	UBERON:0002436	90.55	gold quality
prefrontal cortex	UBERON:0000451	87.90	gold quality
frontal cortex	UBERON:0001870	87.48	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	87.35	gold quality
right frontal lobe	UBERON:0002810	86.69	gold quality
Brodmann (1909) area 9	UBERON:0013540	86.20	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	85.71	gold quality
anterior cingulate cortex	UBERON:0009835	83.95	gold quality
cerebral cortex	UBERON:0000956	83.29	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.19	gold quality
temporal lobe	UBERON:0001871	70.98	gold quality
amygdala	UBERON:0001876	70.79	gold quality
corpus callosum	UBERON:0002336	70.14	gold quality
brain	UBERON:0000955	67.76	gold quality
ventricular zone	UBERON:0003053	62.92	gold quality
Ammon’s horn	UBERON:0001954	62.43	gold quality
skeletal muscle tissue	UBERON:0001134	60.69	silver quality
muscle tissue	UBERON:0002385	60.60	silver quality
tonsil	UBERON:0002372	60.31	silver quality
multicellular organism	UBERON:0000468	57.09	gold quality
lymph node	UBERON:0000029	56.78	gold quality
omental fat pad	UBERON:0010414	55.74	gold quality
adipose tissue	UBERON:0001013	54.13	gold quality
testis	UBERON:0000473	52.41	gold quality
right testis	UBERON:0004534	52.21	gold quality
stromal cell of endometrium	CL:0002255	51.93	silver quality
blood	UBERON:0000178	51.90	gold quality
calcaneal tendon	UBERON:0003701	51.89	silver quality
nucleus accumbens	UBERON:0001882	51.14	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.