DLGAP4-AS1

Summary

DLGAP4-AS1 (DLGAP4 antisense RNA 1, HGNC:51223) is a long non-coding RNA gene on chromosome 20q11.23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51223
Approved symbol	DLGAP4-AS1
Name	DLGAP4 antisense RNA 1
Location	20q11.23
Locus type	RNA, long non-coding
Status	Approved
Aliases	CCAT7
Ensembl gene	ENSG00000232907
Ensembl biotype	lncRNA
Entrez	101926987
RNAcentral	URS000075AB8D — lncRNA, 1241 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000425233, ENST00000433238, ENST00000439595, ENST00000559455, ENST00000559804, ENST00000656949, ENST00000793269, ENST00000793270, ENST00000793271, ENST00000793272, ENST00000793273, ENST00000793274, ENST00000793275

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000425233 — 7 exons

Exon	Start	End
ENSE00001611134	36510880	36511032
ENSE00001701841	36571441	36571543
ENSE00003706338	36525501	36525566
ENSE00003924594	36507705	36508274
ENSE00003934548	36512485	36512725
ENSE00004175984	36527724	36527924
ENSE00004175986	36572912	36573410

Expression profiles

Bgee: expression breadth ubiquitous, 161 present calls, max score 82.14.

FANTOM5 (CAGE): breadth broad, TPM avg 0.6767 / max 13.5156, expressed in 343 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
187121	0.6085	327
187120	0.0682	32

Top tissues by expression

246 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.14	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.12	gold quality
left testis	UBERON:0004533	77.11	gold quality
right testis	UBERON:0004534	76.51	gold quality
sural nerve	UBERON:0015488	75.60	gold quality
testis	UBERON:0000473	75.35	gold quality
buccal mucosa cell	CL:0002336	72.64	gold quality
bone marrow cell	CL:0002092	71.59	silver quality
granulocyte	CL:0000094	71.06	gold quality
colonic epithelium	UBERON:0000397	69.91	gold quality
apex of heart	UBERON:0002098	68.40	gold quality
mucosa of stomach	UBERON:0001199	68.19	gold quality
right lobe of liver	UBERON:0001114	67.82	gold quality
sperm	CL:0000019	67.67	silver quality
hindlimb stylopod muscle	UBERON:0004252	67.51	gold quality
left lobe of thyroid gland	UBERON:0001120	67.13	gold quality
thyroid gland	UBERON:0002046	66.84	gold quality
adrenal tissue	UBERON:0018303	66.72	gold quality
spleen	UBERON:0002106	66.67	gold quality
lower esophagus mucosa	UBERON:0035834	66.64	gold quality
right lobe of thyroid gland	UBERON:0001119	66.47	gold quality
ganglionic eminence	UBERON:0004023	66.25	gold quality
popliteal artery	UBERON:0002250	65.53	gold quality
tibial artery	UBERON:0007610	65.51	gold quality
aorta	UBERON:0000947	64.85	gold quality
ascending aorta	UBERON:0001496	64.53	gold quality
muscle layer of sigmoid colon	UBERON:0035805	64.34	gold quality
thoracic aorta	UBERON:0001515	64.29	gold quality
tendon of biceps brachii	UBERON:0008188	63.76	gold quality
stromal cell of endometrium	CL:0002255	63.63	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.58

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.