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DMAC2

gene
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Also known as FLJ10241

Summary

DMAC2 (distal membrane arm assembly component 2, HGNC:25496) is a protein-coding gene on chromosome 19q13.2, encoding Distal membrane-arm assembly complex protein 2 (Q9NW81). Required for the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Involved in mitochondrial respiratory chain complex I assembly. Located in mitochondrion.

Source: NCBI Gene 55101 — automated summary from GO annotations (Alliance of Genome Resources).

At a glance

  • GWAS associations: 7
  • Clinical variants (ClinVar): 65 total
  • GTEx eGene: eQTL in 42 tissues, sQTL in 50 (q < 0.05)
  • Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 1.32 (unconstrained)
  • MANE Select transcript: NM_018035
  • Notable: 65 clinical variants but no curated precision-oncology (CIViC) evidence yet

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:25496
Approved symbolDMAC2
Namedistal membrane arm assembly component 2
Location19q13.2
Locus typegene with protein product
StatusApproved
AliasesFLJ10241
Ensembl geneENSG00000105341
Ensembl biotypeprotein_coding
OMIM617262
Entrez55101

Gene structure

Transcript identifiers

Ensembl transcripts: 31 — 16 protein_coding, 12 nonsense_mediated_decay, 3 retained_intron

MANE Select: ENST00000221943

Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 1, TSL 2: 10, TSL 3: 1, TSL 4: 2, TSL 5: 1

ENST00000221943, ENST00000301183, ENST00000417807, ENST00000438807, ENST00000586786, ENST00000589102, ENST00000589503, ENST00000589970, ENST00000590641, ENST00000592922, ENST00000594339, ENST00000594660, ENST00000595407, ENST00000595425, ENST00000597457, ENST00000597608, ENST00000979866, ENST00000979867, ENST00000979868, ENST00001048567, ENST00001048568, ENST00001048569, ENST00001048570, ENST00001048571, ENST00001048572, ENST00001048573, ENST00001048574, ENST00001048575, ENST00001060043, ENST00001127015, ENST00001142358

RefSeq mRNA: 11 — MANE Select: NM_018035 NM_001167867, NM_001167868, NM_001167869, NM_001167870, NM_001167871, NM_001320838, NM_001320839, NM_001320840, NM_001320841, NM_001320844, NM_018035

CCDS: CCDS33032, CCDS54269, CCDS54270, CCDS54271, CCDS59389, CCDS59390, CCDS82353, CCDS82354

Canonical transcript exons

ENST00000221943 — 6 exons

ExonStartEnd
ENSE000007084574143327241433434
ENSE000027489634143131841432408
ENSE000034952504143821841438414
ENSE000035748084143353741433673
ENSE000035937214143639241436472
ENSE000038999424143988241439912

Expression profiles

Bgee: expression breadth ubiquitous, 290 present calls, max score 97.58.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 15.9457 / max 175.6751, expressed in 1811 samples.

Highest expression (Bgee): apex of heart, heart left ventricle, cardiac ventricle, jejunal mucosa, parotid gland.

Genetic regulation across tissues (GTEx eQTL / sQTL)

DMAC2 is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 42 tissues and its splicing (sQTL) in 50 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.

showing 20 of 92 significant tissue × QTL associations:

TissueQTLq-valueSlopeLead variant
Cells Cultured fibroblastssqtl6.0e-263-1.3119:41433392:C:G
Muscle Skeletalsqtl1.3e-247-1.2819:41433392:C:G
Thyroidsqtl4.1e-218-1.2719:41433392:C:G
Artery Tibialsqtl5.6e-217-1.2919:41433392:C:G
Esophagus Mucosasqtl5.1e-205-1.3419:41433392:C:G
Skin Sun Exposed Lower legsqtl2.9e-187-1.1919:41433392:C:G
Nerve Tibialsqtl6.6e-175-1.1819:41433392:C:G
Adipose Subcutaneoussqtl3.1e-169-1.1319:41433392:C:G
Adipose Visceral Omentumsqtl1.1e-166-1.1819:41433392:C:G
Esophagus Muscularissqtl2.2e-160-1.3119:41433392:C:G
Heart Atrial Appendagesqtl4.7e-160-1.4019:41433392:C:G
Skin Not Sun Exposed Suprapubicsqtl3.9e-155-1.2219:41433392:C:G
Whole Bloodsqtl1.1e-145-1.1819:41433392:C:G
Lungsqtl1.3e-145-1.1519:41433392:C:G
Cells EBV-transformed lymphocytessqtl8.0e-134-1.5019:41433392:C:G
Breast Mammary Tissuesqtl2.9e-133-1.1919:41433392:C:G
Colon Transversesqtl4.7e-132-1.2619:41433392:C:G
Testissqtl3.7e-127-1.3519:41433392:C:G
Artery Aortasqtl4.0e-127-1.2319:41433392:C:G
Esophagus Gastroesophageal Junctionsqtl2.4e-111-1.3319:41433392:C:G

FANTOM5 promoters

3 alternative TSS:

Promoter IDTPM avgSamples expressed
18106815.37241811
1810670.5408283
1810660.03259

Top tissues by expression

showing 100 of 292 tissues by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
apex of heartUBERON:000209897.58gold quality
heart left ventricleUBERON:000208497.01gold quality
cardiac ventricleUBERON:000208296.95gold quality
jejunal mucosaUBERON:000039995.91gold quality
parotid glandUBERON:000183195.88gold quality
heartUBERON:000094895.45gold quality
right atrium auricular regionUBERON:000663194.84gold quality
left ventricle myocardiumUBERON:000656694.78gold quality
heart right ventricleUBERON:000208094.76gold quality
duodenumUBERON:000211494.70gold quality
cardiac atriumUBERON:000208194.64gold quality
diaphragmUBERON:000110394.38gold quality
hindlimb stylopod muscleUBERON:000425294.26gold quality
gastrocnemiusUBERON:000138894.22gold quality
lower esophagus muscularis layerUBERON:003583394.17gold quality
lower esophagusUBERON:001347394.16gold quality
biceps brachiiUBERON:000150793.98gold quality
vastus lateralisUBERON:000137993.83gold quality
muscle of legUBERON:000138393.80gold quality
quadriceps femorisUBERON:000137793.75gold quality
muscle organUBERON:000163093.70gold quality
skeletal muscle organUBERON:001489293.70gold quality
jejunumUBERON:000211593.46gold quality
skeletal muscle tissue of biceps brachiiUBERON:000450293.46gold quality
esophagogastric junction muscularis propriaUBERON:003584193.45gold quality
embryoUBERON:000092293.40gold quality
mucosa of transverse colonUBERON:000499193.29gold quality
myocardiumUBERON:000234993.26gold quality
muscle layer of sigmoid colonUBERON:003580593.15gold quality
ganglionic eminenceUBERON:000402393.14gold quality
body of stomachUBERON:000116193.03gold quality
adult mammalian kidneyUBERON:000008292.80gold quality
skeletal muscle tissueUBERON:000113492.75gold quality
adult organismUBERON:000702392.70gold quality
esophagusUBERON:000104392.62gold quality
small intestineUBERON:000210892.60gold quality
metanephros cortexUBERON:001053392.49gold quality
small intestine Peyer’s patchUBERON:000345492.48gold quality
right lungUBERON:000216792.42gold quality
muscle tissueUBERON:000238592.39gold quality
upper lobe of left lungUBERON:000895292.39gold quality
upper lobe of lungUBERON:000894892.28gold quality
prefrontal cortexUBERON:000045192.22gold quality
right adrenal glandUBERON:000123392.15gold quality
lower esophagus mucosaUBERON:003583492.12gold quality
transverse colonUBERON:000115792.03gold quality
metanephrosUBERON:000008191.97gold quality
left coronary arteryUBERON:000162691.90gold quality
cardiac muscle of right atriumUBERON:000337991.85gold quality
triceps brachiiUBERON:000150991.84gold quality
left adrenal glandUBERON:000123491.82gold quality
right adrenal gland cortexUBERON:003582791.79gold quality
nephron tubuleUBERON:000123191.78gold quality
popliteal arteryUBERON:000225091.77gold quality
coronary arteryUBERON:000162191.76gold quality
tibial arteryUBERON:000761091.75gold quality
tongue squamous epitheliumUBERON:000691991.74gold quality
deltoidUBERON:000147691.68gold quality
left adrenal gland cortexUBERON:003582591.68gold quality
intestineUBERON:000016091.64gold quality
skeletal muscle tissue of rectus abdominisUBERON:000451191.64gold quality
esophagus mucosaUBERON:000246991.59gold quality
colonUBERON:000115591.56gold quality
kidneyUBERON:000211391.55gold quality
large intestineUBERON:000005991.53gold quality
body of uterusUBERON:000985391.53gold quality
cortex of kidneyUBERON:000122591.50gold quality
palpebral conjunctivaUBERON:000181291.43gold quality
ileal mucosaUBERON:000033191.36gold quality
ventricular zoneUBERON:000305391.35gold quality
fundus of stomachUBERON:000116091.31gold quality
aortaUBERON:000094791.30gold quality
stomachUBERON:000094591.29gold quality
adrenal cortexUBERON:000123591.22gold quality
descending thoracic aortaUBERON:000234591.22gold quality
cervix squamous epitheliumUBERON:000692291.21silver quality
gluteal muscleUBERON:000200091.18gold quality
right frontal lobeUBERON:000281091.17gold quality
islet of LangerhansUBERON:000000691.15gold quality
left uterine tubeUBERON:000130391.14gold quality
mucosa of stomachUBERON:000119991.11gold quality
right coronary arteryUBERON:000162591.11gold quality
eyeUBERON:000097091.03gold quality
body of pancreasUBERON:000115091.01gold quality
kidney epitheliumUBERON:000481990.97gold quality
frontal cortexUBERON:000187090.94gold quality
pancreasUBERON:000126490.88gold quality
esophagus squamous epitheliumUBERON:000692090.84gold quality
neocortexUBERON:000195090.82gold quality
squamous epitheliumUBERON:000691490.80gold quality
ectocervixUBERON:001224990.79gold quality
lungUBERON:000204890.77gold quality
anterior cingulate cortexUBERON:000983590.76gold quality
cingulate cortexUBERON:000302790.75gold quality
thoracic aortaUBERON:000151590.74gold quality
amniotic fluidUBERON:000017390.70gold quality
right lobe of thyroid glandUBERON:000111990.63gold quality
epithelium of esophagusUBERON:000197690.63gold quality
ascending aortaUBERON:000149690.62gold quality
saliva-secreting glandUBERON:000104490.61gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes10.07

HPA expression

RNA tissue specificity: Low tissue specificity

showing 60 of 80 HPA tissues / cells by nTPM:

Tissue / cellAxisnTPMProtein (IHC)
Tonguetissue74.8
Heart muscletissue72.8low
Skeletal muscletissue64.1medium
Corpus callosumtissue49.9
Spinal cordtissue46.5
Thalamustissue43.9
Cerebral cortextissue43.0medium
Somatosensory cortextissue43.0
Midbraintissue42.4
Motor cortextissue42.3
Duodenumtissue42.3medium
Superior colliculitissue42.1
Frontal cortextissue41.5
Caudate putamentissue40.9
Medulla oblongatatissue40.8
Occipital cortextissue40.3
Small intestinetissue40.1medium
Insular cortextissue38.7
Prefrontal cortextissue38.1
Ponstissue37.4
Retrosplenial cortextissue37.3
Substantia nigratissue37.2
Retrosplenial and cingulate cortextissue36.4
Temporal cortextissue36.2
Hippocampal formationtissue36.1
Entorhinal cortextissue36.1
Putamentissue35.4
Olfactory bulbtissue34.9
Ventral forebraintissue33.8
Cerebellumtissue33.5medium
Amygdalatissue32.4
Periaqueductal graytissue31.8
Parathyroid glandtissue31.2medium
Basal gangliatissue30.5medium
Septumtissue29.4
Hypothalamustissue28.9
Locus coeruleustissue28.0
Salivary glandtissue24.9medium
Vaginatissue24.6high
Thymustissue23.9
Kidneytissue22.5medium
Pancreastissue22.4medium
Esophagustissue22.2high
Ovarytissue21.7medium
Lungtissue21.5high
Postcentral gyrustissue21.1
Hippocampustissue21.0low
Smooth muscletissue20.8not detected
Colontissue20.1medium
Urinary bladdertissue20.1high
Lymph nodetissue19.2not detected
Adipose tissuetissue19.2high
Seminal vesicletissue19.1high
Adrenal glandtissue18.9high
Livertissue18.8medium
Thyroid glandtissue18.4medium
Fallopian tubetissue18.2medium
Nucleus accumbenstissue18.1
Placentatissue17.7medium
Retinatissue17.4

Brain sub-regions (HPA Brain Atlas): detected in 192; highest nTPM — White matter (49.9), Ventral spinal cord (46.5), Dorsal spinal cord (40.1), Blood vessel (34.8), Dorsal hippocampus (34.7).

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

Targeting DMAC2 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).

showing 30 of 37 miRNAs:

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-4481100.0066.421669
HSA-MIR-4745-5P99.9865.951028
HSA-MIR-4731-5P99.8967.232537
HSA-MIR-808099.8267.521342
HSA-MIR-6739-5P99.8067.872806
HSA-MIR-320A-3P99.7769.732107
HSA-MIR-320B99.7769.732107
HSA-MIR-320C99.7769.732107
HSA-MIR-320D99.7769.732107
HSA-MIR-442999.7769.622111
HSA-MIR-6733-5P99.7467.942759
HSA-MIR-561-3P99.6470.903647
HSA-MIR-315399.5567.592337
HSA-MIR-671-5P99.5267.111277
HSA-MIR-312399.4767.152693
HSA-MIR-4786-3P99.3668.351390
HSA-MIR-612899.3367.831581
HSA-MIR-6828-5P99.3169.211433
HSA-MIR-472199.2666.05818
HSA-MIR-5589-5P98.3464.821148
HSA-MIR-653-3P98.3167.711542
HSA-MIR-4664-5P98.1765.071020
HSA-MIR-892B98.0067.11821
HSA-MIR-6819-5P97.9666.591071
HSA-MIR-4446-3P97.9164.29991
HSA-MIR-146B-3P97.8365.29782
HSA-MIR-6737-5P97.7566.541044
HSA-MIR-63497.7467.11818
HSA-MIR-6812-5P97.5665.391059
HSA-MIR-342-5P97.2564.10817

Functional genomics

gnomAD constraint: pLI 9.74e-12, LOEUF 1.32, missense Z 0.669 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD

Regional missense constraint (gnomAD RMC): no regional variation along ENST00000221943 — one region, missense o/e 0.94.

Cross-species orthologs

5 orthologs

OrganismSymbolGene ID
danio_reriodmac2ENSDARG00000096597
mus_musculusDmac2ENSMUSG00000057229
rattus_norvegicusDmac2ENSRNOG00000020596
drosophila_melanogasterCG4042FBGN0037018
caenorhabditis_elegansWBGENE00021815

Mouse-model phenotypes

Observed phenotypes of the mouse ortholog (MGI:1913599) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 2 distinct phenotype terms.

Mouse phenotype (MP)Records
abnormal locomotor behavior1
preweaning lethality, complete penetrance1

Additional cross-species homologs

Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.

OrganismUniProtIdentityMethod
Pongo abeliiQ5R9E699.0%Diamond
Macaca fascicularisQ4R5F985.2%Diamond
Bos taurusA6QNS974.4%Diamond

Genomic neighbors (locus context)

Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).

SymbolTypeEntrez
PCAT19ncRNA100505495
B3GNT8protein-coding374907
ERICH4protein-coding100170765
BCKDHAprotein-coding593
EXOSC5protein-coding56915
TMEM91protein-coding641649
TGFB1protein-coding7040
B9D2protein-coding80776

Protein

Protein identifiers

Distal membrane-arm assembly complex protein 2 — Q9NW81 (reviewed: Q9NW81)

Alternative names: ATP synthase subunit s-like protein

All UniProt accessions (8): B4DFT4, Q9NW81, K7EIV4, K7ESN5, M0QX81, M0QZC4, M0QZP7, M0R078

UniProt curated annotations — full annotation on UniProt →

Function. Required for the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I). Involved in the assembly of the distal region of complex I.

Subunit / interactions. Interacts with incompletely assembled mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Subcellular location. Mitochondrion.

Similarity. Belongs to the ATP synthase subunit s family.

Isoforms (6)

UniProt IDNamesCanonical?
Q9NW81-11yes
Q9NW81-22
Q9NW81-33
Q9NW81-44
Q9NW81-55
Q9NW81-66

RefSeq proteins (11): NP_001161339, NP_001161340, NP_001161341, NP_001161342, NP_001161343, NP_001307767, NP_001307768, NP_001307769, NP_001307770, NP_001307773, NP_060505* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR032675LRR_dom_sfHomologous_superfamily

UniProt features (11 total): sequence variant 5, splice variant 3, chain 1, modified residue 1, sequence conflict 1

Structure

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q9NW81-F179.560.63

Human Protein Atlas

Protein class: Predicted intracellular proteins

Protein evidence: Evidence at protein level

Subcellular location (HPA, imaging): mitochondria

Antibody reliability (HPA): IH approved · IF approved

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (1)

TypePositions
Phosphoserine253

Function

Pathways and Gene Ontology

Reactome pathways

1 curated (TAS) of 4; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).

4 pathways:

IDPathwayEvidence
R-HSA-6799198Complex I biogenesiscurated
R-HSA-1428517Aerobic respiration and respiratory electron transport—
R-HSA-1430728Metabolism—
R-HSA-611105Respiratory electron transport—

MSigDB gene sets: 107 (showing top): GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN, GOBP_MITOCHONDRIAL_RESPIRATORY_CHAIN_COMPLEX_ASSEMBLY, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_DN, MCBRYAN_PUBERTAL_BREAST_4_5WK_DN, MCBRYAN_PUBERTAL_BREAST_5_6WK_UP, GOBP_SCF_DEPENDENT_PROTEASOMAL_UBIQUITIN_DEPENDENT_PROTEIN_CATABOLIC_PROCESS, NOUZOVA_TRETINOIN_AND_H4_ACETYLATION, GOBP_PROTEASOMAL_PROTEIN_CATABOLIC_PROCESS, IVANOVA_HEMATOPOIESIS_EARLY_PROGENITOR, GOBP_PROTEIN_CATABOLIC_PROCESS, SENESE_HDAC3_TARGETS_DN, GOCC_SCF_UBIQUITIN_LIGASE_COMPLEX, NUYTTEN_EZH2_TARGETS_DN

GO Biological Process (2): SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (GO:0031146), mitochondrial respiratory chain complex I assembly (GO:0032981)

GO Molecular Function (1): protein binding (GO:0005515)

GO Cellular Component (2): mitochondrion (GO:0005739), SCF ubiquitin ligase complex (GO:0019005)

Reactome top-level categories

3 top-level categories:

CategoryPathways
Respiratory electron transport1
Metabolism1
Aerobic respiration and respiratory electron transport1

GO top-level categories

7 GO namespaces:

CategoryTerms
proteasome-mediated ubiquitin-dependent protein catabolic process1
NADH dehydrogenase complex assembly1
mitochondrial respiratory chain complex assembly1
binding1
cytoplasm1
intracellular membrane-bounded organelle1
cullin-RING ubiquitin ligase complex1

Experimentally-supported GO annotations

GO terms backed by direct experimental evidence (ECO experimental codes) — 2 of 5 annotations. The rest are phylogenetic / computational / electronic (IEA).

2 experimentally-supported GO terms:

GO termNSEvidence
mitochondrial respiratory chain complex I assemblyBPmutant phenotype
mitochondrionCChigh-throughput

Protein interactions and networks

STRING

showing 15 of 628 interactions by confidence (×1000):

Protein AProtein BPartner UniProtScore
DMAC2TMEM186Q96B77667
DMAC2TMEM70Q9BUB7646
DMAC2FOXRED1Q96CU9639
DMAC2TTC9BQ8N6N2593
DMAC2DMAC1Q96GE9584
DMAC2NDUFAF1Q9Y375518
DMAC2IRGQQ8WZA9494
DMAC2TMEM126BQ8IUX1491
DMAC2NDUFAF4Q9P032482
DMAC2TIMMDC1Q9NPL8463
DMAC2LRFN3Q9BTN0462
DMAC2NDUFAF6Q330K2429
DMAC2ACAD9Q9H845428
DMAC2TULP2O00295417
DMAC2ABRACLQ9P1F3413

Disease & clinical

Genetic variants

Variant evidence for DMAC2: 65 ClinVar records (0 pathogenic / likely pathogenic); 7 GWAS associations.

ClinVar

65 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance45
Likely benign12
Benign0

SpliceAI

Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 12 predictions of 497):

Position(s)EffectΔscoreSites
19:41433674acceptor_gain1.0000
19:41433674–41433675acceptor_loss1.00003
19:41433682acceptor_gain1.0000
19:41436382donor_gain1.0000
19:41436404donor_gain1.0000
19:41432945donor_gain0.9900
19:41432969donor_gain0.9900
19:41433207donor_gain0.9900
19:41433259donor_gain0.9900
19:41433532donor_loss0.9900

AlphaMissense

322 missense substitutions predicted likely pathogenic (of 1,673 scored), across 106 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:

ResidueLikely-pathogenic substitutionsMean am_pathogenicityMax am_pathogenicity
N7180.8420.902
F10070.9410.985
W10570.9090.975
D16370.8910.937
C18470.8750.969
D16270.8700.936
F9070.8580.967
W16470.8300.920
C22960.9060.967
G19160.8440.957
G14060.8160.952
M22560.8070.839
C15860.7810.940
I18750.8170.924
K9950.8000.914
E22450.7570.842
V9850.6980.976
D20550.6830.749
L20140.8980.958
L17940.8920.971

HPA cancer prognostics

RNA cancer specificity: Low cancer specificity

Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.

3 prognostic cancer types:

CancerPrognosticp-value
Kidney Renal Clear Cell Carcinoma (TCGA)favorable8.64e-08
Kidney Renal Clear Cell Carcinoma (validation)favorable0.000224
Liver Hepatocellular Carcinoma (TCGA)unfavorable0.000302

Disease associations

OMIM: gene MIM:617262 | disease phenotypes:

GWAS associations

7 associations:

StudyTraitp-value
GCST000817_58Height5e-16
GCST001714_2Prostate cancer2e-12
GCST012227_28Hip circumference adjusted for BMI6e-11
GCST008163_96Height4e-10
GCST90020028_1950Hip circumference adjusted for BMI4e-10
GCST001714_1Prostate cancer1e-8
GCST001119_2Schizophrenia1e-7

EFO canonical traits (from GWAS)

1 canonical traits:

EFO IDTrait name
EFO:0008039BMI-adjusted hip circumference

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (CPIC guideline: no)

CTD chemical–gene interactions

11 total (human), top 11 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidaffects expression, decreases expression2
arseniteaffects binding, increases reaction1
di-n-butylphosphoric acidaffects expression1
Sunitinibdecreases expression1
Acetaminophenincreases expression1
Benzo(a)pyreneincreases methylation1
Cadmiumdecreases expression, increases abundance1
Leadaffects splicing1
Smokedecreases expression1
Tretinoindecreases expression1
Cadmium Chloridedecreases expression, increases abundance1

Cellosaurus cell lines

1 cell lines: 1 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_B1Q6Abcam HeLa DMAC2 KOCancer cell lineFemale

Clinical trials (associated diseases)

Via MONDO — disease-level, not drug-specific.

No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.