DNAH14
gene geneOn this page
Also known as Dnahc14HL-18HL18DKFZp781B1548MGC27277
Summary
DNAH14 (dynein axonemal heavy chain 14, HGNC:2945) is a protein-coding gene on chromosome 1q42.12, encoding Dynein axonemal heavy chain 14 (Q0VDD8). Force generating protein of respiratory cilia.
Dyneins are microtubule-associated motor protein complexes composed of several heavy, light, and intermediate chains. Two major classes of dyneins, axonemal and cytoplasmic, have been identified. DNAH14 is an axonemal dynein heavy chain (DHC) (Vaughan et al., 1996 [PubMed 8812413]).
Source: NCBI Gene 127602 — RefSeq curated summary.
At a glance
- Gene–disease (curated): neurodevelopmental disorder (Limited, GenCC) — +1 more curated relationship
- GWAS associations: 10
- Clinical variants (ClinVar): 991 total — 1 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 1
- MANE Select transcript:
NM_001367479
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2945 |
| Approved symbol | DNAH14 |
| Name | dynein axonemal heavy chain 14 |
| Location | 1q42.12 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | Dnahc14, HL-18, HL18, DKFZp781B1548, MGC27277 |
| Ensembl gene | ENSG00000185842 |
| Ensembl biotype | protein_coding |
| OMIM | 603341 |
| Entrez | 127602 |
Gene structure
Transcript identifiers
Ensembl transcripts: 20 — 14 protein_coding, 2 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined, 2 retained_intron
ENST00000327794, ENST00000328556, ENST00000366848, ENST00000366849, ENST00000366850, ENST00000400952, ENST00000428003, ENST00000430092, ENST00000433124, ENST00000439375, ENST00000445597, ENST00000450490, ENST00000453375, ENST00000474127, ENST00000474801, ENST00000486657, ENST00000495456, ENST00000498360, ENST00000638635, ENST00000682510
RefSeq mRNA: 6 — MANE Select: NM_001367479
NM_001145154, NM_001349911, NM_001349912, NM_001367479, NM_001367481, NM_144989
CCDS: CCDS41472, CCDS44322, CCDS86053, CCDS91163
Canonical transcript exons
ENST00000682510 — 86 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001291490 | 225304908 | 225305089 |
| ENSE00001291590 | 225324222 | 225324353 |
| ENSE00001292793 | 225308285 | 225308410 |
| ENSE00001294493 | 225322664 | 225322823 |
| ENSE00001298711 | 225333291 | 225333506 |
| ENSE00001298981 | 225277410 | 225277502 |
| ENSE00001309607 | 225318583 | 225318677 |
| ENSE00001311369 | 225275914 | 225276081 |
| ENSE00001312350 | 225307461 | 225307569 |
| ENSE00001316648 | 225324737 | 225324832 |
| ENSE00001370047 | 225337266 | 225337496 |
| ENSE00001373449 | 225338061 | 225338182 |
| ENSE00001442749 | 225331437 | 225331577 |
| ENSE00001551911 | 225123527 | 225123614 |
| ENSE00001612056 | 225340457 | 225340701 |
| ENSE00001622120 | 225159314 | 225159485 |
| ENSE00001694013 | 225140768 | 225141021 |
| ENSE00002204337 | 225204183 | 225204273 |
| ENSE00002206457 | 225097118 | 225097239 |
| ENSE00002210816 | 225240593 | 225240822 |
| ENSE00002212321 | 225042835 | 225043114 |
| ENSE00002215599 | 225353803 | 225353888 |
| ENSE00002218793 | 225289885 | 225290082 |
| ENSE00002221312 | 225266641 | 225266769 |
| ENSE00002230531 | 225303156 | 225303347 |
| ENSE00002238484 | 225051451 | 225051795 |
| ENSE00002239538 | 225043744 | 225043789 |
| ENSE00002243004 | 225345962 | 225346380 |
| ENSE00002248392 | 225082549 | 225082739 |
| ENSE00002248456 | 225117881 | 225117999 |
| ENSE00002249637 | 224967431 | 224967583 |
| ENSE00002250055 | 225100713 | 225100884 |
| ENSE00002258577 | 225398520 | 225398666 |
| ENSE00002260099 | 225206968 | 225207220 |
| ENSE00002261161 | 225265182 | 225265369 |
| ENSE00002264774 | 225007413 | 225007544 |
| ENSE00002265129 | 225264197 | 225264261 |
| ENSE00002266462 | 225152697 | 225152883 |
| ENSE00002268510 | 225023615 | 225023865 |
| ENSE00002272629 | 225271906 | 225272073 |
| ENSE00002275146 | 225367805 | 225368032 |
| ENSE00002280652 | 225259121 | 225259253 |
| ENSE00002281506 | 225117684 | 225117788 |
| ENSE00002282889 | 225002783 | 225002927 |
| ENSE00002285699 | 225038694 | 225038823 |
| ENSE00002286252 | 225205971 | 225206179 |
| ENSE00002288978 | 224974091 | 224974153 |
| ENSE00002293521 | 225043886 | 225043983 |
| ENSE00002293599 | 225152005 | 225152073 |
| ENSE00002296121 | 225050210 | 225050376 |
| ENSE00002297883 | 225167939 | 225168028 |
| ENSE00002300027 | 225185291 | 225185425 |
| ENSE00002300061 | 225231073 | 225231151 |
| ENSE00002300802 | 225257960 | 225258118 |
| ENSE00002303079 | 225147104 | 225147249 |
| ENSE00002303899 | 225351647 | 225351883 |
| ENSE00002305815 | 225270735 | 225270866 |
| ENSE00002308947 | 225079207 | 225079548 |
| ENSE00002311786 | 225272955 | 225273125 |
| ENSE00002311891 | 225080379 | 225080748 |
| ENSE00002312665 | 225153750 | 225153826 |
| ENSE00002313056 | 225252301 | 225252417 |
| ENSE00002316026 | 225346456 | 225346654 |
| ENSE00002319871 | 225192696 | 225192911 |
| ENSE00002320138 | 225300869 | 225301030 |
| ENSE00002322086 | 225119220 | 225119294 |
| ENSE00002324419 | 225085544 | 225085789 |
| ENSE00003467275 | 225380159 | 225380322 |
| ENSE00003476119 | 224952670 | 224952779 |
| ENSE00003504090 | 224954959 | 224955098 |
| ENSE00003521560 | 225358496 | 225358652 |
| ENSE00003531733 | 224964479 | 224964609 |
| ENSE00003566641 | 225389734 | 225389873 |
| ENSE00003566713 | 225381383 | 225381579 |
| ENSE00003570764 | 224960153 | 224960302 |
| ENSE00003581183 | 225144397 | 225144628 |
| ENSE00003596361 | 225145326 | 225145379 |
| ENSE00003601139 | 225392291 | 225392451 |
| ENSE00003654369 | 225364792 | 225364894 |
| ENSE00003675132 | 225388379 | 225388491 |
| ENSE00003680539 | 224968759 | 224968874 |
| ENSE00003681209 | 225360681 | 225360891 |
| ENSE00003917016 | 225374688 | 225374885 |
| ENSE00003918793 | 225399054 | 225399286 |
| ENSE00003919613 | 225377237 | 225377436 |
| ENSE00003921705 | 224929675 | 224929835 |
Expression profiles
Bgee: expression breadth ubiquitous, 172 present calls, max score 89.75.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 14.8865 / max 240.6436, expressed in 1551 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 8813 | 10.4078 | 1454 |
| 8816 | 2.2169 | 958 |
| 8812 | 0.6647 | 331 |
| 8815 | 0.5581 | 330 |
| 8817 | 0.4084 | 246 |
| 8814 | 0.3319 | 166 |
| 8818 | 0.2986 | 131 |
Top tissues by expression
253 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| left testis | UBERON:0004533 | 89.75 | gold quality |
| right testis | UBERON:0004534 | 89.53 | gold quality |
| adrenal tissue | UBERON:0018303 | 88.21 | gold quality |
| testis | UBERON:0000473 | 86.80 | gold quality |
| body of pancreas | UBERON:0001150 | 86.73 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 86.41 | gold quality |
| adenohypophysis | UBERON:0002196 | 85.54 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.48 | gold quality |
| buccal mucosa cell | CL:0002336 | 84.69 | gold quality |
| pancreas | UBERON:0001264 | 84.09 | gold quality |
| pituitary gland | UBERON:0000007 | 82.97 | gold quality |
| islet of Langerhans | UBERON:0000006 | 82.85 | gold quality |
| ventricular zone | UBERON:0003053 | 82.70 | gold quality |
| colonic epithelium | UBERON:0000397 | 82.66 | gold quality |
| right lobe of liver | UBERON:0001114 | 81.71 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 81.64 | gold quality |
| left ovary | UBERON:0002119 | 80.94 | gold quality |
| right uterine tube | UBERON:0001302 | 80.69 | gold quality |
| metanephros cortex | UBERON:0010533 | 80.37 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 80.01 | gold quality |
| right ovary | UBERON:0002118 | 79.54 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 79.27 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 78.81 | gold quality |
| left adrenal gland | UBERON:0001234 | 78.67 | gold quality |
| right adrenal gland | UBERON:0001233 | 78.64 | gold quality |
| thyroid gland | UBERON:0002046 | 78.52 | gold quality |
| ganglionic eminence | UBERON:0004023 | 78.26 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 77.99 | gold quality |
| spinal cord | UBERON:0002240 | 77.90 | gold quality |
| adrenal gland | UBERON:0002369 | 77.81 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-25 | yes | 9.86 |
| E-ANND-3 | yes | 8.99 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 4)
- Genetic variants within DNAH6, DNAH14, and DNAAF3 are associated with variation in lung function among persons with cystic fibrosis. (PMID:29323929)
- Clinical and Genetic Spectrum of Children With Primary Ciliary Dyskinesia in China. (PMID:33577779)
- DNAH14 variants are associated with neurodevelopmental disorders. (PMID:35438214)
- Circular RNA DNAH14 molecular mechanism in an experimental model of hepatocellular carcinoma treated with Cobalt chloride to mimic the hypoxia-like response of transcatheter arterial chemoembolization. (PMID:38263208)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Dnah14 | ENSMUSG00000047369 |
| rattus_norvegicus | Dnah14 | ENSRNOG00000070092 |
Paralogs (15): DNAH9 (ENSG00000007174), DNAH5 (ENSG00000039139), DNAH11 (ENSG00000105877), DNAH1 (ENSG00000114841), DNAH6 (ENSG00000115423), DNAH7 (ENSG00000118997), DNAH8 (ENSG00000124721), DNAH3 (ENSG00000158486), DNAH12 (ENSG00000174844), DNHD1 (ENSG00000179532), DNAH2 (ENSG00000183914), DYNC2H1 (ENSG00000187240), DNAH17 (ENSG00000187775), DYNC1H1 (ENSG00000197102), DNAH10 (ENSG00000197653)
Protein
Protein identifiers
Dynein axonemal heavy chain 14 — Q0VDD8 (reviewed: Q0VDD8)
Alternative names: Axonemal beta dynein heavy chain 14, Ciliary dynein heavy chain 14
All UniProt accessions (11): A0A1W2PR53, A0A804HLD3, Q0VDD8, H0YBB1, H0YBI3, H7BXS7, H7C164, H7C374, H7C3Z3, H9KV43, M9MMK7
UniProt curated annotations — full annotation on UniProt →
Function. Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.
Subunit / interactions. Consists of at least two heavy chains and a number of intermediate and light chains.
Subcellular location. Cytoplasm. Cytoskeleton. Cilium axoneme.
Domain organisation. Dynein heavy chains probably consist of an N-terminal stem (which binds cargo and interacts with other dynein components), and the head or motor domain. The motor contains six tandemly-linked AAA domains in the head, which form a ring. A stalk-like structure (formed by two of the coiled coil domains) protrudes between AAA 4 and AAA 5 and terminates in a microtubule-binding site. A seventh domain may also contribute to this ring; it is not clear whether the N-terminus or the C-terminus forms this extra domain. There are four well-conserved and two non-conserved ATPase sites, one per AAA domain. Probably only one of these (within AAA 1) actually hydrolyzes ATP, the others may serve a regulatory function.
Similarity. Belongs to the dynein heavy chain family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q0VDD8-1 | 1 | yes |
| Q0VDD8-2 | 2 | |
| Q0VDD8-3 | 3 | |
| Q0VDD8-4 | 4 |
RefSeq proteins (6): NP_001138626, NP_001336840, NP_001336841, NP_001354408, NP_001354410, NP_659426 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR024317 | Dhc_D4 | Domain |
| IPR024743 | Dynein_HC_stalk | Domain |
| IPR026983 | DHC | Family |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR035699 | Dhc_AAA | Domain |
| IPR035706 | AAA_9 | Domain |
| IPR041228 | Dhc_C | Domain |
| IPR041466 | Dhc_AAA5_ext | Domain |
| IPR043157 | Dynein_AAA1S | Homologous_superfamily |
| IPR043160 | Dynein_C_barrel | Homologous_superfamily |
Pfam: PF12774, PF12775, PF12777, PF12780, PF12781, PF17852, PF18199
UniProt features (30 total): splice variant 19, sequence variant 3, binding site 2, chain 1, region of interest 1, coiled-coil region 1, sequence conflict 1, short sequence motif 1, glycosylation site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
No AlphaFold model available for Q0VDD8 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (2): 1164–1171; 1427–1434
Glycosylation sites (1): 1818
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 82 (showing top):
GOCC_MICROTUBULE_ORGANIZING_CENTER, GOBP_CILIUM_MOVEMENT, GOMF_CYTOSKELETAL_MOTOR_ACTIVITY, GOCC_CENTROSOME, GOBP_CILIUM_OR_FLAGELLUM_DEPENDENT_CELL_MOTILITY, GOCC_CYTOPLASMIC_REGION, GOCC_MOTILE_CILIUM, GOCC_DYNEIN_COMPLEX, GOCC_CILIUM, GOCC_CILIARY_BASAL_BODY, GOMF_MICROTUBULE_MOTOR_ACTIVITY, GOMF_ADENYL_NUCLEOTIDE_BINDING, GOMF_ISOMERASE_ACTIVITY, RAO_BOUND_BY_SALL4_ISOFORM_B, GOCC_9PLUS2_MOTILE_CILIUM
GO Biological Process (2): cilium movement involved in cell motility (GO:0060294), microtubule-based movement (GO:0007018)
GO Molecular Function (6): ATP binding (GO:0005524), minus-end-directed microtubule motor activity (GO:0008569), dynein intermediate chain binding (GO:0045505), dynein light intermediate chain binding (GO:0051959), nucleotide binding (GO:0000166), ATP hydrolysis activity (GO:0016887)
GO Cellular Component (9): microtubule (GO:0005874), axoneme (GO:0005930), dynein complex (GO:0030286), 9+2 motile cilium (GO:0097729), cytoplasm (GO:0005737), cytoskeleton (GO:0005856), axonemal dynein complex (GO:0005858), cilium (GO:0005929), cell projection (GO:0042995)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| protein binding | 2 |
| cilium movement | 1 |
| cell motility | 1 |
| cilium-dependent cell motility | 1 |
| microtubule-based process | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| microtubule motor activity | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| ATP-dependent activity | 1 |
| microtubule cytoskeleton | 1 |
| polymeric cytoskeletal fiber | 1 |
| cytoskeleton | 1 |
| microtubule | 1 |
| ciliary plasm | 1 |
| microtubule associated complex | 1 |
| catalytic complex | 1 |
| radial spoke | 1 |
| motile cilium | 1 |
| inner dynein arm | 1 |
| outer dynein arm | 1 |
| axonemal central pair | 1 |
| axonemal doublet microtubule | 1 |
| intracellular anatomical structure | 1 |
| intracellular membraneless organelle | 1 |
| axoneme | 1 |
| dynein complex | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane bounded cell projection | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
27 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RELL2 | OXSR1 | psi-mi:“MI:0914”(association) | 0.830 |
| CETN1 | SFI1 | psi-mi:“MI:0914”(association) | 0.640 |
| SLC31A1 | C2orf72 | psi-mi:“MI:0914”(association) | 0.530 |
| DLK1 | TCAF2 | psi-mi:“MI:0914”(association) | 0.530 |
| IGSF8 | CLGN | psi-mi:“MI:0914”(association) | 0.530 |
| IMPDH1 | BCAT2 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNRD2 | CCDC85C | psi-mi:“MI:0914”(association) | 0.530 |
| DNAH14 | PDIA3 | psi-mi:“MI:0915”(physical association) | 0.400 |
| P | psi-mi:“MI:0914”(association) | 0.350 | |
| CTLA4 | TMEM120B | psi-mi:“MI:0914”(association) | 0.350 |
| PIPSL | C1orf226 | psi-mi:“MI:0914”(association) | 0.350 |
| FTL | SH3PXD2B | psi-mi:“MI:0914”(association) | 0.350 |
| ZNRD2 | KRBA1 | psi-mi:“MI:0914”(association) | 0.350 |
| CAMK2A | SMCHD1 | psi-mi:“MI:0914”(association) | 0.350 |
| MICB | TNFRSF10B | psi-mi:“MI:0914”(association) | 0.350 |
| CAMK2D | SETD1A | psi-mi:“MI:0914”(association) | 0.350 |
| TNFRSF1B | MAP3K7 | psi-mi:“MI:0914”(association) | 0.350 |
| IKZF5 | PEX14 | psi-mi:“MI:0914”(association) | 0.350 |
| LHFPL2 | SRC | psi-mi:“MI:0914”(association) | 0.350 |
| DNAH14 | CETN2 | psi-mi:“MI:0914”(association) | 0.350 |
| CAMK2A | MAP3K7 | psi-mi:“MI:0914”(association) | 0.350 |
| CAMK2D | PPM1D | psi-mi:“MI:0914”(association) | 0.350 |
| FTL | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (44): DNAH14 (Affinity Capture-MS), DNAH14 (Affinity Capture-MS), CETN2 (Affinity Capture-MS), DNAH14 (Affinity Capture-MS), DNAH14 (Affinity Capture-MS), DNAH14 (Affinity Capture-MS), DNAH14 (Affinity Capture-MS), DNAH14 (Affinity Capture-MS), CETN2 (Affinity Capture-MS), DNAH14 (Affinity Capture-MS), GFAP (Affinity Capture-MS), DNAH14 (Affinity Capture-MS), DNAH14 (Affinity Capture-RNA), DNAH14 (Biochemical Activity), DNAH14 (Affinity Capture-MS)
ESM2 similar proteins: A2AKX3, A4IJ27, A4QNW7, A5WUT8, A5WWB6, A6H7E2, A6QM04, A9CB91, B1WBT0, C9JQI7, E1BC15, F1MF21, F5H4B4, O08648, O36397, O75969, P0C137, P0C139, P0C142, Q02484, Q0P4G8, Q0VDD8, Q12912, Q3TTJ4, Q4R7D5, Q5CZC0, Q5GJ75, Q5K6N0, Q63164, Q641I1, Q66HB6, Q67402, Q6AXP3, Q6IRT3, Q6NRW0, Q6NS59, Q7Z333, Q810N5, Q8BJS8, Q8C4J0
Diamond homologs: Q0VDD8, Q3V0Q1, Q6ZR08, Q923J6, E9Q8T7, M0R8U1, P37276, P38650, Q19020, Q27171, Q27802, Q39610, Q63164, Q63170, Q8BW94, Q8TD57, Q8WXX0, Q9JHU4, Q9P2D7, Q9SMH5, P78716, Q14204, Q9C0G6, P34036, P45444
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
991 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 1 |
| Uncertain significance | 821 |
| Likely benign | 68 |
| Benign | 29 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1678644 | NM_001367479.1(DNAH14):c.6166C>T (p.Arg2056Ter) | Pathogenic |
| 2683757 | NM_001367479.1(DNAH14):c.3697C>T (p.Gln1233Ter) | Likely pathogenic |
SpliceAI
15360 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:224952669:GCCA:G | acceptor_gain | 1.0000 |
| 1:224952786:G:GG | donor_gain | 1.0000 |
| 1:224954957:A:AG | acceptor_gain | 1.0000 |
| 1:224954958:G:GC | acceptor_gain | 1.0000 |
| 1:224954958:GA:G | acceptor_gain | 1.0000 |
| 1:224954958:GAC:G | acceptor_gain | 1.0000 |
| 1:224954958:GACT:G | acceptor_gain | 1.0000 |
| 1:224954958:GACTT:G | acceptor_gain | 1.0000 |
| 1:224955095:GAAG:G | donor_gain | 1.0000 |
| 1:224955096:AAGG:A | donor_loss | 1.0000 |
| 1:224955099:G:GA | donor_loss | 1.0000 |
| 1:224967423:A:AG | acceptor_gain | 1.0000 |
| 1:224967424:A:AG | acceptor_gain | 1.0000 |
| 1:224967425:T:G | acceptor_gain | 1.0000 |
| 1:224967426:CTCAG:C | acceptor_loss | 1.0000 |
| 1:224967428:CAGAA:C | acceptor_loss | 1.0000 |
| 1:224967429:A:AG | acceptor_gain | 1.0000 |
| 1:224967430:G:GG | acceptor_gain | 1.0000 |
| 1:224967430:GA:G | acceptor_gain | 1.0000 |
| 1:224967430:GAA:G | acceptor_gain | 1.0000 |
| 1:224967430:GAAA:G | acceptor_gain | 1.0000 |
| 1:224967430:GAAAC:G | acceptor_gain | 1.0000 |
| 1:225023861:ATCAG:A | donor_loss | 1.0000 |
| 1:225023862:TCAG:T | donor_loss | 1.0000 |
| 1:225023863:CAG:C | donor_loss | 1.0000 |
| 1:225023864:AGG:A | donor_loss | 1.0000 |
| 1:225023865:GGT:G | donor_loss | 1.0000 |
| 1:225023866:G:A | donor_loss | 1.0000 |
| 1:225023867:T:A | donor_loss | 1.0000 |
| 1:225038687:A:AG | acceptor_gain | 1.0000 |
AlphaMissense
30671 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:225192795:T:A | W1497R | 0.995 |
| 1:225192795:T:C | W1497R | 0.995 |
| 1:225205985:T:A | W1571R | 0.995 |
| 1:225205985:T:C | W1571R | 0.995 |
| 1:225324315:T:A | W2451R | 0.995 |
| 1:225324315:T:C | W2451R | 0.995 |
| 1:225240675:T:A | W1774R | 0.993 |
| 1:225240675:T:C | W1774R | 0.993 |
| 1:225381574:T:A | W3248R | 0.993 |
| 1:225381574:T:C | W3248R | 0.993 |
| 1:225388457:T:A | W3276R | 0.993 |
| 1:225388457:T:C | W3276R | 0.993 |
| 1:224967455:T:C | F302L | 0.990 |
| 1:224967457:T:A | F302L | 0.990 |
| 1:224967457:T:G | F302L | 0.990 |
| 1:225388428:T:C | L3266P | 0.990 |
| 1:225207173:T:C | L1704P | 0.989 |
| 1:225252375:T:A | W1848R | 0.989 |
| 1:225252375:T:C | W1848R | 0.989 |
| 1:225303276:T:A | W2172R | 0.988 |
| 1:225303276:T:C | W2172R | 0.988 |
| 1:225240667:C:A | A1771D | 0.987 |
| 1:225388437:G:C | R3269P | 0.987 |
| 1:224967510:T:C | L320P | 0.986 |
| 1:225007446:T:C | F356L | 0.986 |
| 1:225007448:T:A | F356L | 0.986 |
| 1:225007448:T:G | F356L | 0.986 |
| 1:225322707:G:C | A2381P | 0.986 |
| 1:225351781:T:A | W2915R | 0.986 |
| 1:225351781:T:C | W2915R | 0.986 |
dbSNP variants (sampled 300 via entrez): RS1000000294 (1:225208987 T>C), RS1000004991 (1:225396296 CG>C), RS1000011449 (1:225172669 G>A), RS1000016970 (1:224962909 C>G), RS1000027075 (1:225359424 T>C), RS1000032818 (1:225314038 T>C), RS1000037173 (1:225156515 A>G), RS1000064288 (1:225059137 C>T), RS1000066745 (1:225236083 T>G), RS1000079531 (1:225258968 C>G), RS1000084123 (1:225214542 T>C), RS1000089004 (1:225083739 T>C), RS1000089983 (1:224963208 T>A), RS1000094708 (1:225381001 AT>A,ATT), RS1000096006 (1:225036197 G>A)
Disease associations
OMIM: gene MIM:603341 | disease phenotypes: MIM:236750
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder | Limited | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| primary ciliary dyskinesia | Disputed | AR |
Mondo (3): neurodevelopmental disorder (MONDO:0700092), non-immune hydrops fetalis (MONDO:0009369), microcephaly (MONDO:0001149)
Orphanet (1): Non-immune hydrops fetalis (Orphanet:363999)
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000252 | Microcephaly |
GWAS associations
10 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002938_18 | Copper levels | 2.000000e-06 |
| GCST005851_25 | Delirium | 4.000000e-06 |
| GCST006948_11 | Feeling nervous | 3.000000e-09 |
| GCST008876_41 | Non-lobar intracerebral hemorrhage (MTAG) | 9.000000e-06 |
| GCST010988_271 | Adult body size | 3.000000e-08 |
| GCST012489_84 | Heel bone mineral density x serum urate levels interaction | 6.000000e-09 |
| GCST012490_16 | Femur bone mineral density x serum urate levels interaction | 3.000000e-13 |
| GCST90002392_254 | Mean corpuscular volume | 2.000000e-12 |
| GCST90002397_752 | Mean spheric corpuscular volume | 5.000000e-10 |
| GCST90006987_6 | Gut microbiota relative abundance (Bifidobacterium) | 3.000000e-06 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009597 | feeling nervous measurement |
| EFO:0010178 | non-lobar intracerebral hemorrhage |
| EFO:0004531 | urate measurement |
| EFO:0009270 | heel bone mineral density |
| EFO:0007874 | gut microbiome measurement |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
25 total (human), top 25 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, increases methylation | 2 |
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | increases expression | 1 |
| TAK-243 | increases sumoylation | 1 |
| methylmercuric chloride | increases expression | 1 |
| beta-lapachone | decreases expression, increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| manganese chloride | decreases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| abrine | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Cisplatin | decreases expression | 1 |
| Gold | decreases expression | 1 |
| Hydralazine | affects cotreatment, increases expression | 1 |
| Manganese | decreases expression | 1 |
| Methapyrilene | increases methylation | 1 |
| Oxygen | decreases expression | 1 |
| Tretinoin | decreases expression | 1 |
| Valproic Acid | increases expression, affects cotreatment | 1 |
| Cyclosporine | increases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
| Cadmium Chloride | decreases expression | 1 |
| Okadaic Acid | increases expression | 1 |
| Particulate Matter | increases expression, increases abundance | 1 |
Clinical trials (associated diseases)
202 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | PHASE2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT00503191 | PHASE1 | COMPLETED | NeuroModulation Technique Treatment of Autism |
| NCT04475848 | PHASE1 | COMPLETED | A Study to Investigate the Safety, Tolerability, Pharmacokinetics, Pharmacodynamics and Food Effect of RO6953958 in Healthy Participants |
| NCT06300398 | PHASE1 | COMPLETED | IAMA-6 Oral Dose Study in Healthy Adults |
| NCT01783041 | PHASE2/PHASE3 | COMPLETED | Effect of Early L-Carnitine Supplementation on Neurodevelopmental Outcomes in Very Preterm Infants |
| NCT05767385 | PHASE2/PHASE3 | RECRUITING | Fetal Cerebrovascular Autoregulation in Congenital Heart Disease and Association With Neonatal Neurobehavior |
| NCT05675098 | EARLY_PHASE1 | NOT_YET_RECRUITING | Central Nervous System Stimulants and Physical Function in Children With Cerebral Palsy |
| NCT00783783 | Not specified | COMPLETED | CYP2D6 Pharmacogenetics in Risperidone-Treated Children |
| NCT01778504 | Not specified | RECRUITING | Studying Childhood-onset Behavioral, Psychiatric, and Developmental Disorders |
| NCT01850784 | Not specified | UNKNOWN | High Energy Formula Feeding in Infants With Congenital Heart Disease |
| NCT01922791 | Not specified | COMPLETED | Nutrition and Pregnancy Intervention Study |
| NCT01942525 | Not specified | UNKNOWN | Influence of Intrauterine Growth Restriction on Amplitude-integrated EEG in Preterm Infants |
| NCT02003170 | Not specified | COMPLETED | Etiology and Early Diagnosis of Neurodevelopmental Disorders |
| NCT02118649 | Not specified | ACTIVE_NOT_RECRUITING | Enhancing Behavior and Brain Response to Visual Targets Using a Computer Game |
| NCT02557191 | Not specified | TERMINATED | Biomarkers, Neurodevelopment and Preterm Infants |
| NCT02690675 | Not specified | COMPLETED | Iron Supplement Effect on Child Development |
| NCT02694003 | Not specified | COMPLETED | Better Nights, Better Days for Children With Neurodevelopment Disorders |
| NCT02792894 | Not specified | COMPLETED | Family Networks (FaNs) for Children With Developmental Disorders and Delays |
| NCT02871674 | Not specified | UNKNOWN | Good Night Project: Behavioural Sleep Interventions for Children With ADHD: A Randomised Controlled Trial |
| NCT02887157 | Not specified | COMPLETED | Analyzing Retinal Microanatomy in ROP |
| NCT02898298 | Not specified | COMPLETED | Positive Emotion Regulation Training in Children, Adolescents and Young Adults With and Without Developmental Disorder |
| NCT02912780 | Not specified | UNKNOWN | Introduction of Microsystems in a Level 3 Neonatal Intensive Care Unit |
| NCT03023293 | Not specified | COMPLETED | n-3 PUFAs, Irisin and Maternal Glucose Metabolism From Pregnancy to Postpartum |
| NCT03023644 | Not specified | COMPLETED | Improving Neurodevelopmental Outcomes in Children With Congenital Heart Disease: An Intervention Study |
| NCT03032991 | Not specified | UNKNOWN | Early Biomarkers of Neurodevelopment in Offspring of Diabetic Mothers |
| NCT03088189 | Not specified | TERMINATED | Effect of Parental Peri-conceptional Vitamin B12 Supplementation on Infant Neurocognitive Development in Offspring |
| NCT03096028 | Not specified | COMPLETED | Developmental Origins of Mental Health Disorders |
| NCT03148782 | Not specified | COMPLETED | Brain Plasticity Underlying Acquisition of New Organizational Skills in Children-R61 Phase |
| NCT03172104 | Not specified | COMPLETED | Neurobehavioural Development of Infants Born <30 Weeks Gestational Age Between Birth and Five Years of Age |
| NCT03222375 | Not specified | RECRUITING | SQUED™ Series 28.1 Home-use and Treatment of Autowave Reverberator of Autism |
| NCT03229928 | Not specified | COMPLETED | Clinical Testing of a Real-Time Behavior Measurement Tool: Measuring Outcomes for CHAnge |
| NCT03232489 | Not specified | UNKNOWN | Study for the Evaluation of the Feasibility of Applying Advanced MRI Scanning in Pediatric Clinical Practice |
Related Atlas pages
- Associated diseases: neurodevelopmental disorder, primary ciliary dyskinesia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): delirium, neurodevelopmental disorder, non-immune hydrops fetalis