DNAJA2
gene geneOn this page
Also known as HIRIP4DNAJCPR3DNJ3
Summary
DNAJA2 (DnaJ heat shock protein family (Hsp40) member A2, HGNC:14884) is a protein-coding gene on chromosome 16q11.2, encoding DnaJ homolog subfamily A member 2 (O60884). Co-chaperone of Hsc70.
The protein encoded by this gene belongs to the evolutionarily conserved DNAJ/HSP40 family of proteins, which regulate molecular chaperone activity by stimulating ATPase activity. DNAJ proteins may have up to 3 distinct domains: a conserved 70-amino acid J domain, usually at the N terminus; a glycine/phenylalanine (G/F)-rich region; and a cysteine-rich domain containing 4 motifs resembling a zinc finger domain. The product of this gene works as a cochaperone of Hsp70s in protein folding and mitochondrial protein import in vitro.
Source: NCBI Gene 10294 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 45 total
- Druggable target: yes
- MANE Select transcript:
NM_005880
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:14884 |
| Approved symbol | DNAJA2 |
| Name | DnaJ heat shock protein family (Hsp40) member A2 |
| Location | 16q11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HIRIP4, DNAJ, CPR3, DNJ3 |
| Ensembl gene | ENSG00000069345 |
| Ensembl biotype | protein_coding |
| OMIM | 611322 |
| Entrez | 10294 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 6 protein_coding, 1 nonsense_mediated_decay, 1 retained_intron
ENST00000317089, ENST00000563158, ENST00000569553, ENST00000617000, ENST00000898901, ENST00000917412, ENST00000968499, ENST00000968500
RefSeq mRNA: 1 — MANE Select: NM_005880
NM_005880
CCDS: CCDS10726
Canonical transcript exons
ENST00000317089 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000682853 | 46971349 | 46971572 |
| ENSE00000682855 | 46971896 | 46971955 |
| ENSE00001308081 | 46955362 | 46957220 |
| ENSE00002611132 | 46973495 | 46973674 |
| ENSE00003473638 | 46968084 | 46968164 |
| ENSE00003533248 | 46967513 | 46967646 |
| ENSE00003614046 | 46959275 | 46959419 |
| ENSE00003670389 | 46959003 | 46959130 |
| ENSE00003690454 | 46964611 | 46964807 |
Expression profiles
Bgee: expression breadth ubiquitous, 289 present calls, max score 96.68.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 86.7471 / max 819.9124, expressed in 1825 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 157232 | 85.1295 | 1825 |
| 157231 | 1.6176 | 998 |
Top tissues by expression
294 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| calcaneal tendon | UBERON:0003701 | 96.68 | gold quality |
| gastrocnemius | UBERON:0001388 | 95.65 | gold quality |
| muscle of leg | UBERON:0001383 | 95.58 | gold quality |
| endothelial cell | CL:0000115 | 95.56 | gold quality |
| sperm | CL:0000019 | 95.52 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 95.51 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 95.43 | gold quality |
| adrenal tissue | UBERON:0018303 | 95.22 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 95.15 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 95.13 | gold quality |
| cortical plate | UBERON:0005343 | 95.03 | gold quality |
| right atrium auricular region | UBERON:0006631 | 94.99 | gold quality |
| prefrontal cortex | UBERON:0000451 | 94.84 | gold quality |
| cardiac atrium | UBERON:0002081 | 94.82 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 94.61 | gold quality |
| monocyte | CL:0000576 | 94.59 | gold quality |
| heart left ventricle | UBERON:0002084 | 94.56 | gold quality |
| cardiac ventricle | UBERON:0002082 | 94.51 | gold quality |
| muscle organ | UBERON:0001630 | 94.47 | gold quality |
| islet of Langerhans | UBERON:0000006 | 94.38 | gold quality |
| heart | UBERON:0000948 | 94.38 | gold quality |
| right adrenal gland | UBERON:0001233 | 94.38 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 94.33 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 94.31 | gold quality |
| mononuclear cell | CL:0000842 | 94.29 | gold quality |
| biceps brachii | UBERON:0001507 | 94.27 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 94.23 | gold quality |
| leukocyte | CL:0000738 | 94.20 | gold quality |
| ganglionic eminence | UBERON:0004023 | 94.18 | gold quality |
| left adrenal gland | UBERON:0001234 | 94.13 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-13 | no | 3.12 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
186 targeting DNAJA2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-513B-5P | 99.99 | 69.96 | 2150 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
| HSA-MIR-98-5P | 99.98 | 72.33 | 1787 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-4715-3P | 99.98 | 66.03 | 670 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
Literature-anchored findings (GeneRIF, showing 12)
- Rdj2 modulates G protein signaling and further suggest that chaperoning G proteins is an emerging theme of the J protein network. (PMID:18595009)
- Bag1 NEF increased refolding by Hsc70 and DJA2, as did the newly characterized NEF Hsp110 (PMID:18684711)
- Hsp40 type 1 chaperones DJA1 (DNAJA1/Hdj2) and DJA2 (DNAJA2) as key modulators of hERG degradation (PMID:19940115)
- The DNAJA2 substrate release mechanism is essential for chaperone-mediated folding. (PMID:23091061)
- we combined the Hsp70-NEF pairs with cochaperones of the J protein family (DnaJA1, DnaJA2, DnaJB1, and DnaJB4) to generate 16 permutations. (PMID:24318877)
- Study shows that Hsp40 and Hsp70 recognize a region of the androgen receptor (AR) N-terminal domain (NTD), including a FQNLF motif, that interacts with the AR ligand-binding domain (LBD) upon activation. This suggests that competition between molecular chaperones and the LBD for the FQNLF motif regulates AR activation. (PMID:31395886)
- overexpressing DNAJA2 but not DNAJA1 enhanced CFTR degradation at the endoplasmic reticulum by Hsc70/Hsp70 and the E3 ubiquitin ligase CHIP. Excess Hsp70 also promoted CFTR degradation, but this occurred through the lysosomal pathway and required CHIP but not complex formation with HOP and Hsp90. (PMID:31408507)
- Hsp40 proteins phase separate to chaperone the assembly and maintenance of membraneless organelles. (PMID:33229560)
- DNAJA2 deficiency activates cGAS-STING pathway via the induction of aberrant mitosis and chromosome instability. (PMID:37640708)
- The self-association equilibrium of DNAJA2 regulates its interaction with unfolded substrate proteins and with Hsc70. (PMID:37670029)
- Pseudophosphorylation of single residues of the J-domain of DNAJA2 regulates the holding/folding balance of the Hsc70 system. (PMID:39012012)
- DNAJA2 and Hero11 mediate similar conformational extension and aggregation suppression of TDP-43. (PMID:39117455)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | dnaja2b | ENSDARG00000010745 |
| danio_rerio | dnaja2a | ENSDARG00000104066 |
| mus_musculus | Dnaja2 | ENSMUSG00000031701 |
| rattus_norvegicus | Dnaja2 | ENSRNOG00000016251 |
| caenorhabditis_elegans | WBGENE00001037 |
Paralogs (3): DNAJA1 (ENSG00000086061), DNAJA3 (ENSG00000103423), DNAJA4 (ENSG00000140403)
Protein
Protein identifiers
DnaJ homolog subfamily A member 2 — O60884 (reviewed: O60884)
Alternative names: Cell cycle progression restoration gene 3 protein, Dnj3, HIRA-interacting protein 4, Renal carcinoma antigen NY-REN-14
All UniProt accessions (3): O60884, A0A087WT48, I3L320
UniProt curated annotations — full annotation on UniProt →
Function. Co-chaperone of Hsc70. Stimulates ATP hydrolysis and the folding of unfolded proteins mediated by HSPA1A/B (in vitro).
Subcellular location. Membrane.
RefSeq proteins (1): NP_005871* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001305 | HSP_DnaJ_Cys-rich_dom | Domain |
| IPR001623 | DnaJ_domain | Domain |
| IPR002939 | DnaJ_C | Domain |
| IPR008971 | HSP40/DnaJ_pept-bd | Homologous_superfamily |
| IPR012724 | DnaJ | Family |
| IPR018253 | DnaJ_domain_CS | Conserved_site |
| IPR036410 | HSP_DnaJ_Cys-rich_dom_sf | Homologous_superfamily |
| IPR036869 | J_dom_sf | Homologous_superfamily |
| IPR044713 | DNJA1/2-like | Family |
Pfam: PF00226, PF00684, PF01556
UniProt features (33 total): binding site 8, modified residue 8, sequence conflict 6, repeat 4, chain 1, propeptide 1, domain 1, lipid moiety-binding region 1, cross-link 1, zinc finger region 1, region of interest 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7ZHS | ELECTRON MICROSCOPY | 6.9 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O60884-F1 | 84.10 | 0.53 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (8): 146; 159; 162; 186; 189; 202; 205; 143
Post-translational modifications (10): 39, 78, 123, 152, 391, 394, 395, 409, 409, 134
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-3371497 | HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand |
| R-HSA-9918487 | Dengue Virus Genome Translation and Replication |
MSigDB gene sets: 265 (showing top):
GSE45365_NK_CELL_VS_CD8A_DC_MCMV_INFECTION_UP, SHEPARD_BMYB_MORPHOLINO_UP, TGCGCANK_UNKNOWN, GAANYNYGACNY_UNKNOWN, TGACCTY_ERR1_Q2, AAAYRNCTG_UNKNOWN, BONCI_TARGETS_OF_MIR15A_AND_MIR16_1, COUP_01, GOBP_PROTEIN_MATURATION, SOX9_B1, FOSTER_TOLERANT_MACROPHAGE_UP, HNF4_DR1_Q3, HNF4_01, GOBP_PROTEIN_FOLDING, PPAR_DR1_Q2
GO Biological Process (4): positive regulation of cell population proliferation (GO:0008284), response to heat (GO:0009408), protein refolding (GO:0042026), protein folding (GO:0006457)
GO Molecular Function (9): ATPase activator activity (GO:0001671), ATP binding (GO:0005524), zinc ion binding (GO:0008270), Hsp70 protein binding (GO:0030544), obsolete unfolded protein binding (GO:0051082), protein-folding chaperone binding (GO:0051087), protein binding (GO:0005515), heat shock protein binding (GO:0031072), metal ion binding (GO:0046872)
GO Cellular Component (4): cytoplasm (GO:0005737), cytosol (GO:0005829), membrane (GO:0016020), extracellular exosome (GO:0070062)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Cellular responses to stress | 1 |
| Dengue Virus Infection | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| protein binding | 2 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| positive regulation of cellular process | 1 |
| response to stress | 1 |
| response to temperature stimulus | 1 |
| protein folding | 1 |
| cellular process | 1 |
| protein maturation | 1 |
| ATP-dependent activity | 1 |
| molecular function activator activity | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| transition metal ion binding | 1 |
| heat shock protein binding | 1 |
| protein-folding chaperone binding | 1 |
| binding | 1 |
| cation binding | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| extracellular vesicle | 1 |
Protein interactions and networks
STRING
3770 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DNAJA2 | HSPA8 | P11142 | 814 |
| DNAJA2 | PRTN3 | P15637 | 735 |
| DNAJA2 | HSPA4 | P34932 | 713 |
| DNAJA2 | IL32 | P24001 | 645 |
| DNAJA2 | DNAJC6 | O75061 | 620 |
| DNAJA2 | MAPT | P10636 | 523 |
| DNAJA2 | SEC61A1 | P38378 | 521 |
| DNAJA2 | HSPA9 | P30036 | 521 |
| DNAJA2 | CANX | P27824 | 519 |
| DNAJA2 | MYB | P10242 | 514 |
| DNAJA2 | DNAJC2 | Q99543 | 514 |
| DNAJA2 | TBRG4 | Q969Z0 | 507 |
| DNAJA2 | HSP90AB1 | P08238 | 506 |
| DNAJA2 | DNAJB4 | Q9UDY4 | 503 |
| DNAJA2 | HSP90AA1 | P07900 | 495 |
IntAct
267 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| IFIT2 | IFIT3 | psi-mi:“MI:0914”(association) | 0.780 |
| PIGS | GPAA1 | psi-mi:“MI:0914”(association) | 0.760 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| H4C16 | HAT1 | psi-mi:“MI:0914”(association) | 0.700 |
| RAF1 | CALU | psi-mi:“MI:0914”(association) | 0.640 |
| IGF1R | PIK3R2 | psi-mi:“MI:2364”(proximity) | 0.590 |
| DNAJA2 | DYNLT1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DCAF10 | DNAJA2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HSCB | DNAJA2 | psi-mi:“MI:0915”(physical association) | 0.550 |
| ILK | HAX1 | psi-mi:“MI:0914”(association) | 0.530 |
| IRAK1 | SEC16A | psi-mi:“MI:0914”(association) | 0.530 |
| TUBB3 | POTEF | psi-mi:“MI:0914”(association) | 0.530 |
| PRKCZ | IPO5 | psi-mi:“MI:0914”(association) | 0.530 |
| DTL | DNAJA2 | psi-mi:“MI:0914”(association) | 0.530 |
| ELP2 | DNAJA2 | psi-mi:“MI:0914”(association) | 0.530 |
| TAF1C | DNAJA2 | psi-mi:“MI:0914”(association) | 0.530 |
| DDX11 | DNAJA2 | psi-mi:“MI:0914”(association) | 0.530 |
| IFT122 | DNAJA2 | psi-mi:“MI:0914”(association) | 0.530 |
| TTLL5 | DNAJA2 | psi-mi:“MI:0914”(association) | 0.530 |
| DNAJA1 | DNAJA2 | psi-mi:“MI:0914”(association) | 0.530 |
| NOL9 | IPO5 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (706): DNAJA2 (Affinity Capture-MS), DNAJA2 (Affinity Capture-Western), DNAJA2 (Affinity Capture-Western), DNAJA2 (Affinity Capture-MS), DNAJA2 (Affinity Capture-MS), DNAJA2 (Affinity Capture-MS), DNAJA2 (Affinity Capture-MS), DNAJA2 (Affinity Capture-MS), DNAJA2 (Affinity Capture-MS), DNAJA2 (Affinity Capture-MS), DNAJA2 (Affinity Capture-MS), DNAJA2 (Affinity Capture-MS), DNAJA2 (Affinity Capture-MS), DNAJA2 (Affinity Capture-MS), ABCF2 (Co-fractionation)
ESM2 similar proteins: A6QBG7, B9FHF3, O35824, O60884, O74752, O75953, O89114, O94625, O94657, P25294, P25303, P25491, P25685, P42824, P42825, P43644, P59910, P78004, P81999, Q03363, Q04960, Q09912, Q0JB88, Q24133, Q2HJ94, Q2KIT4, Q3AQP5, Q3MI00, Q3ZBA6, Q54ED3, Q5BIP8, Q5R8J8, Q5RAJ6, Q626I7, Q6MNG0, Q6TUG0, Q8A8C3, Q8GWW8, Q8MPX3, Q8TA83
Diamond homologs: A0LJ41, A1KR91, A3DF24, A4XKA5, A5EYE5, A5ITA7, A6LRN5, A6Q486, A6QHC2, A6U251, A6UEY1, A7X2Y0, A8Z4B8, A9IGC5, A9KG87, A9LZV9, A9N8H1, B0SHT0, B0SRF0, B2IBR5, B2TLZ8, B2V2I6, B3CP03, B6IZJ1, B6J7U6, B8I304, B9FHF3, B9JZ89, B9MJZ0, C0R562, C3MC05, O27352, O35824, O60884, O66921, O74752, O75953, O89114, P25491, P31689
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 226 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane | 5 | 17.4× | 1e-03 |
| Transport of connexons to the plasma membrane | 5 | 17.4× | 1e-03 |
| Gap junction trafficking and regulation | 5 | 15.2× | 1e-03 |
| Gap junction trafficking | 5 | 15.2× | 1e-03 |
| Post-chaperonin tubulin folding pathway | 5 | 15.2× | 1e-03 |
| Activation of AMPK downstream of NMDARs | 6 | 14.6× | 7e-04 |
| Formation of tubulin folding intermediates by CCT/TriC | 5 | 13.6× | 1e-03 |
| RHO GTPases activate IQGAPs | 6 | 13.3× | 8e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| Schwann cell development | 5 | 27.7× | 2e-04 |
| insulin-like growth factor receptor signaling pathway | 7 | 18.3× | 5e-05 |
| insulin receptor signaling pathway | 8 | 9.3× | 5e-04 |
| MAPK cascade | 11 | 8.9× | 4e-05 |
| protein autophosphorylation | 10 | 7.7× | 2e-04 |
| obsolete positive regulation of NF-kappaB transcription factor activity | 7 | 7.6× | 5e-03 |
| microtubule cytoskeleton organization | 9 | 5.7× | 4e-03 |
| positive regulation of MAPK cascade | 12 | 5.1× | 9e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
45 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 25 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1310 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 16:46957220:CCTT:C | acceptor_gain | 1.0000 |
| 16:46957226:T:C | acceptor_gain | 1.0000 |
| 16:46957226:T:TC | acceptor_gain | 1.0000 |
| 16:46958996:CACTT:C | donor_loss | 1.0000 |
| 16:46958997:ACTTA:A | donor_loss | 1.0000 |
| 16:46958998:CTTA:C | donor_loss | 1.0000 |
| 16:46958999:TTACA:T | donor_loss | 1.0000 |
| 16:46959000:TACAG:T | donor_loss | 1.0000 |
| 16:46959001:A:AC | donor_gain | 1.0000 |
| 16:46959001:A:AT | donor_loss | 1.0000 |
| 16:46959002:C:CC | donor_gain | 1.0000 |
| 16:46959002:CA:C | donor_gain | 1.0000 |
| 16:46959002:CAG:C | donor_gain | 1.0000 |
| 16:46959002:CAGA:C | donor_gain | 1.0000 |
| 16:46959002:CAGAA:C | donor_gain | 1.0000 |
| 16:46959127:CACC:C | acceptor_gain | 1.0000 |
| 16:46959129:CC:C | acceptor_gain | 1.0000 |
| 16:46959130:CCTAT:C | acceptor_gain | 1.0000 |
| 16:46959271:TTA:T | donor_loss | 1.0000 |
| 16:46959272:TAC:T | donor_loss | 1.0000 |
| 16:46959274:CC:C | donor_loss | 1.0000 |
| 16:46959416:ATAC:A | acceptor_gain | 1.0000 |
| 16:46959417:TAC:T | acceptor_gain | 1.0000 |
| 16:46959418:AC:A | acceptor_gain | 1.0000 |
| 16:46959419:CC:C | acceptor_gain | 1.0000 |
| 16:46959419:CCTA:C | acceptor_loss | 1.0000 |
| 16:46959420:C:CC | acceptor_gain | 1.0000 |
| 16:46959420:C:CG | acceptor_loss | 1.0000 |
| 16:46959421:T:C | acceptor_loss | 1.0000 |
| 16:46964606:ATCAC:A | donor_loss | 1.0000 |
AlphaMissense
2734 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 16:46959064:A:G | L329P | 1.000 |
| 16:46959103:C:T | G316E | 1.000 |
| 16:46959104:C:A | G316W | 1.000 |
| 16:46959104:C:G | G316R | 1.000 |
| 16:46959104:C:T | G316R | 1.000 |
| 16:46959362:C:G | A278P | 1.000 |
| 16:46964715:C:G | G224R | 1.000 |
| 16:46964771:C:G | C205S | 1.000 |
| 16:46964772:A:T | C205S | 1.000 |
| 16:46967523:A:C | C189W | 1.000 |
| 16:46967524:C:G | C189S | 1.000 |
| 16:46967524:C:T | C189Y | 1.000 |
| 16:46967525:A:G | C189R | 1.000 |
| 16:46967525:A:T | C189S | 1.000 |
| 16:46967532:G:C | C186W | 1.000 |
| 16:46967533:C:G | C186S | 1.000 |
| 16:46967533:C:T | C186Y | 1.000 |
| 16:46967534:A:G | C186R | 1.000 |
| 16:46967534:A:T | C186S | 1.000 |
| 16:46967615:A:G | C159R | 1.000 |
| 16:46968100:A:G | C143R | 1.000 |
| 16:46968138:C:T | G130D | 1.000 |
| 16:46971502:C:T | G70E | 1.000 |
| 16:46971541:A:G | L57P | 1.000 |
| 16:46971541:A:T | L57Q | 1.000 |
| 16:46971567:T:A | K48N | 1.000 |
| 16:46971567:T:G | K48N | 1.000 |
| 16:46971570:A:C | F47L | 1.000 |
| 16:46971570:A:T | F47L | 1.000 |
| 16:46971571:A:C | F47C | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000603807 (16:46974774 T>A), RS1000673929 (16:46973767 C>A,G), RS1000860093 (16:46962623 C>A), RS1000869647 (16:46955728 G>T), RS1000870635 (16:46956182 CAA>C), RS1000911325 (16:46974508 T>C), RS1000949001 (16:46973882 G>C), RS1000973993 (16:46960914 A>G), RS1001277034 (16:46972318 G>A,C), RS1001312040 (16:46962362 T>A,C), RS1001526133 (16:46959529 C>A), RS1001585812 (16:46971981 A>G), RS1001669577 (16:46965815 A>G), RS1001805297 (16:46966085 G>A,C), RS1001913855 (16:46960681 C>A,T)
Disease associations
OMIM: gene MIM:611322 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST007401_23 | Factor VII activity | 7.000000e-07 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004619 | factor VII measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4295671 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
37 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| ochratoxin A | decreases acetylation, decreases expression, increases expression | 2 |
| Tobacco Smoke Pollution | increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, affects expression, increases reaction | 2 |
| triphenyl phosphate | affects expression | 1 |
| uranyl acetate | affects expression | 1 |
| pirinixic acid | increases activity, increases expression, affects binding | 1 |
| bisphenol A | decreases expression | 1 |
| sodium arsenite | affects cotreatment, increases abundance, increases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | affects cotreatment, decreases expression | 1 |
| oxidized-L-alpha-1-palmitoyl-2-arachidonoyl-sn-glycero-3-phosphorylcholine | affects expression, increases reaction | 1 |
| nutlin 3 | affects cotreatment, increases secretion | 1 |
| bisphenol AF | increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Air Pollutants | increases abundance, decreases expression | 1 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 1 |
| Atrazine | increases expression | 1 |
| Vehicle Emissions | affects expression, increases reaction | 1 |
| Benzo(a)pyrene | increases expression | 1 |
| Carbamazepine | affects expression | 1 |
| Coumestrol | affects cotreatment, decreases expression | 1 |
| Dactinomycin | affects cotreatment, increases secretion | 1 |
| Diazinon | increases methylation | 1 |
| Diclofenac | affects expression | 1 |
| Hydrogen Peroxide | decreases expression | 1 |
| Indomethacin | decreases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Manganese | affects cotreatment, increases abundance, increases expression | 1 |
| Phenobarbital | affects expression | 1 |
ChEMBL screening assays
2 unique, capped per target: 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4118575 | Binding | Binding affinity to DNAJA2 in human NCI-H23 cells at 1 uM by mass spectrometry based pull down assay | Studies of TAK1-centered polypharmacology with novel covalent TAK1 inhibitors. — Bioorg Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.