DNAJB2
gene geneOn this page
Also known as HSPF3CMT2T
Summary
DNAJB2 (DnaJ heat shock protein family (Hsp40) member B2, HGNC:5228) is a protein-coding gene on chromosome 2q35, encoding DnaJ homolog subfamily B member 2 (P25686). Functions as a co-chaperone, regulating the substrate binding and activating the ATPase activity of chaperones of the HSP70/heat shock protein 70 family.
This gene is almost exclusively expressed in the brain, mainly in the neuronal layers. It encodes a protein that shows sequence similarity to bacterial DnaJ protein and the yeast homologs. In bacteria, this protein is implicated in protein folding and protein complex dissociation. Alternatively spliced transcript variants encoding different isoforms have been described for this gene.
Source: NCBI Gene 3300 — RefSeq curated summary.
At a glance
- Gene–disease (curated): neuronopathy, distal hereditary motor, autosomal recessive 5 (Definitive, ClinGen) — +1 more curated relationship
- Clinical variants (ClinVar): 345 total — 10 pathogenic, 15 likely-pathogenic (top 9% of genes corpus-wide)
- GTEx eGene: eQTL in 11 tissues, sQTL in 21 (q < 0.05)
- Phenotypes (HPO): 12
- Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 0.84 (unconstrained)
- MANE Select transcript:
NM_006736
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:5228 |
| Approved symbol | DNAJB2 |
| Name | DnaJ heat shock protein family (Hsp40) member B2 |
| Location | 2q35 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HSPF3, CMT2T |
| Ensembl gene | ENSG00000135924 |
| Ensembl biotype | protein_coding |
| OMIM | 604139 |
| Entrez | 3300 |
Gene structure
Transcript identifiers
Ensembl transcripts: 26 — 11 protein_coding, 10 retained_intron, 3 protein_coding_CDS_not_defined, 2 nonsense_mediated_decay
MANE Select: ENST00000336576
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 1, TSL 2: 8, TSL 3: 8, TSL 5: 1
ENST00000336576, ENST00000392086, ENST00000392087, ENST00000421532, ENST00000425450, ENST00000439026, ENST00000442681, ENST00000463463, ENST00000470530, ENST00000472019, ENST00000473750, ENST00000476254, ENST00000477917, ENST00000480537, ENST00000481815, ENST00000482988, ENST00000485220, ENST00000487855, ENST00000683651, ENST00000684599, ENST00000933785, ENST00000975365, ENST00000975366, ENST00000975367, ENST00000975368, ENST00001144635
RefSeq mRNA: 2 — MANE Select: NM_006736
NM_001039550, NM_006736
CCDS: CCDS2439, CCDS46519
Canonical transcript exons
ENST00000336576 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001422614 | 219284632 | 219286895 |
| ENSE00001589801 | 219279366 | 219279518 |
| ENSE00003463024 | 219279798 | 219279898 |
| ENSE00003467684 | 219283133 | 219283235 |
| ENSE00003632977 | 219280578 | 219280687 |
| ENSE00003658169 | 219283419 | 219283489 |
| ENSE00003660776 | 219281939 | 219282061 |
| ENSE00003673301 | 219281718 | 219281771 |
| ENSE00003787797 | 219282837 | 219282929 |
Expression profiles
Bgee: expression breadth ubiquitous, 281 present calls, max score 99.14.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 56.7074 / max 1040.5450, expressed in 1804 samples.
Highest expression (Bgee): C1 segment of cervical spinal cord, hemisphere of cerebellum, cerebellar hemisphere, spinal cord, frontal lobe.
Genetic regulation across tissues (GTEx eQTL / sQTL)
DNAJB2 is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 11 tissues and its splicing (sQTL) in 21 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 32 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Nerve Tibial | sqtl | 3.9e-31 | -0.89 | 2:219279688:G:C |
| Brain Spinal cord cervical c-1 | sqtl | 6.4e-11 | -1.10 | 2:219279688:G:C |
| Testis | sqtl | 1.3e-09 | +0.76 | 2:219273686:A:G |
| Muscle Skeletal | sqtl | 4.1e-07 | -0.35 | 2:219281474:G:T |
| Skin Sun Exposed Lower leg | sqtl | 6.0e-06 | -0.38 | 2:219279688:G:C |
| Brain Amygdala | sqtl | 1.6e-04 | +0.86 | 2:219279688:G:C |
| Brain Substantia nigra | sqtl | 2.6e-04 | +0.94 | 2:219276074:G:A |
| Brain Cortex | sqtl | 2.8e-04 | -0.63 | 2:219279688:G:C |
| Esophagus Mucosa | eqtl | 3.0e-04 | -0.42 | 2:219279325:C:A |
| Brain Nucleus accumbens basal ganglia | sqtl | 8.1e-04 | +0.63 | 2:219273686:A:G |
| Skin Not Sun Exposed Suprapubic | sqtl | 8.2e-04 | +0.41 | 2:219279688:G:C |
| Artery Tibial | sqtl | 4.9e-03 | +0.36 | 2:219281474:G:T |
| Adipose Subcutaneous | eqtl | 6.7e-03 | -0.42 | 2:219011359:T:C |
| Artery Tibial | eqtl | 9.6e-03 | -0.30 | 2:219024193:T:A |
| Adipose Visceral Omentum | sqtl | 1.3e-02 | +0.39 | 2:219279688:G:C |
| Brain Hippocampus | sqtl | 1.3e-02 | -0.59 | 2:219279688:G:C |
| Breast Mammary Tissue | sqtl | 1.4e-02 | -0.72 | 2:219283125:G:A |
| Brain Putamen basal ganglia | sqtl | 1.5e-02 | -1.84 | 2:219286259:G:C |
| Thyroid | sqtl | 1.6e-02 | -0.79 | 2:220019927:G:A |
| Colon Sigmoid | eqtl | 1.7e-02 | -0.27 | 2:219915140:A:G |
FANTOM5 promoters
8 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 25440 | 44.2886 | 1782 |
| 25441 | 8.2124 | 1713 |
| 25442 | 2.5451 | 1048 |
| 25439 | 0.8574 | 388 |
| 25443 | 0.4888 | 20 |
| 25444 | 0.1718 | 77 |
| 25438 | 0.1036 | 30 |
| 25445 | 0.0398 | 25 |
Top tissues by expression
showing 100 of 292 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| C1 segment of cervical spinal cord | UBERON:0006469 | 99.14 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 98.80 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 98.66 | gold quality |
| spinal cord | UBERON:0002240 | 98.62 | gold quality |
| right frontal lobe | UBERON:0002810 | 98.62 | gold quality |
| cerebellar cortex | UBERON:0002129 | 98.59 | gold quality |
| adenohypophysis | UBERON:0002196 | 98.09 | gold quality |
| amygdala | UBERON:0001876 | 98.07 | gold quality |
| cingulate cortex | UBERON:0003027 | 97.97 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 97.96 | gold quality |
| prefrontal cortex | UBERON:0000451 | 97.95 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 97.95 | gold quality |
| tibial nerve | UBERON:0001323 | 97.62 | gold quality |
| pituitary gland | UBERON:0000007 | 97.61 | gold quality |
| cerebellum | UBERON:0002037 | 97.60 | gold quality |
| skin of leg | UBERON:0001511 | 97.52 | gold quality |
| nucleus accumbens | UBERON:0001882 | 97.49 | gold quality |
| right adrenal gland | UBERON:0001233 | 97.48 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 97.47 | gold quality |
| left adrenal gland | UBERON:0001234 | 97.42 | gold quality |
| left testis | UBERON:0004533 | 97.41 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 97.41 | gold quality |
| apex of heart | UBERON:0002098 | 97.30 | gold quality |
| corpus callosum | UBERON:0002336 | 97.28 | gold quality |
| hypothalamus | UBERON:0001898 | 97.25 | gold quality |
| skin of abdomen | UBERON:0001416 | 97.23 | gold quality |
| putamen | UBERON:0001874 | 97.16 | gold quality |
| right testis | UBERON:0004534 | 97.14 | gold quality |
| gastrocnemius | UBERON:0001388 | 97.09 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 97.08 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 96.99 | gold quality |
| adrenal cortex | UBERON:0001235 | 96.93 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 96.82 | gold quality |
| body of pancreas | UBERON:0001150 | 96.82 | gold quality |
| caudate nucleus | UBERON:0001873 | 96.82 | gold quality |
| neocortex | UBERON:0001950 | 96.72 | gold quality |
| muscle of leg | UBERON:0001383 | 96.64 | gold quality |
| cortical plate | UBERON:0005343 | 96.63 | gold quality |
| frontal cortex | UBERON:0001870 | 96.62 | gold quality |
| middle frontal gyrus | UBERON:0002702 | 96.55 | gold quality |
| adrenal gland | UBERON:0002369 | 96.46 | gold quality |
| central nervous system | UBERON:0001017 | 96.41 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 96.39 | gold quality |
| brain | UBERON:0000955 | 96.34 | gold quality |
| mucosa of stomach | UBERON:0001199 | 96.31 | gold quality |
| forebrain | UBERON:0001890 | 96.31 | gold quality |
| substantia nigra | UBERON:0002038 | 96.29 | gold quality |
| right uterine tube | UBERON:0001302 | 96.26 | gold quality |
| midbrain | UBERON:0001891 | 96.18 | gold quality |
| telencephalon | UBERON:0001893 | 96.18 | gold quality |
| Ammon’s horn | UBERON:0001954 | 96.18 | gold quality |
| thyroid gland | UBERON:0002046 | 96.14 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 96.09 | gold quality |
| minor salivary gland | UBERON:0001830 | 95.94 | gold quality |
| left ovary | UBERON:0002119 | 95.93 | gold quality |
| islet of Langerhans | UBERON:0000006 | 95.89 | gold quality |
| testis | UBERON:0000473 | 95.87 | gold quality |
| endocervix | UBERON:0000458 | 95.85 | gold quality |
| cerebral cortex | UBERON:0000956 | 95.85 | gold quality |
| metanephros cortex | UBERON:0010533 | 95.85 | gold quality |
| ventricular zone | UBERON:0003053 | 95.76 | gold quality |
| ectocervix | UBERON:0012249 | 95.76 | gold quality |
| body of stomach | UBERON:0001161 | 95.60 | gold quality |
| right ovary | UBERON:0002118 | 95.56 | gold quality |
| medulla oblongata | UBERON:0001896 | 95.46 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 95.44 | gold quality |
| body of uterus | UBERON:0009853 | 95.41 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 95.33 | gold quality |
| temporal lobe | UBERON:0001871 | 95.27 | gold quality |
| gall bladder | UBERON:0002110 | 95.27 | gold quality |
| medial globus pallidus | UBERON:0002477 | 95.22 | gold quality |
| pancreas | UBERON:0001264 | 95.17 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 95.16 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 95.12 | gold quality |
| right atrium auricular region | UBERON:0006631 | 95.10 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 95.09 | gold quality |
| zone of skin | UBERON:0000014 | 95.07 | gold quality |
| ventral tegmental area | UBERON:0002691 | 95.06 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 94.94 | gold quality |
| ganglionic eminence | UBERON:0004023 | 94.91 | gold quality |
| right lung | UBERON:0002167 | 94.90 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 94.88 | gold quality |
| primary visual cortex | UBERON:0002436 | 94.87 | gold quality |
| right lobe of liver | UBERON:0001114 | 94.82 | gold quality |
| cranial nerve II | UBERON:0000941 | 94.80 | gold quality |
| lower esophagus | UBERON:0013473 | 94.67 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 94.67 | gold quality |
| mouth mucosa | UBERON:0003729 | 94.65 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 94.63 | gold quality |
| globus pallidus | UBERON:0001875 | 94.57 | gold quality |
| heart left ventricle | UBERON:0002084 | 94.57 | gold quality |
| ascending aorta | UBERON:0001496 | 94.43 | gold quality |
| left uterine tube | UBERON:0001303 | 94.39 | gold quality |
| occipital lobe | UBERON:0002021 | 94.39 | gold quality |
| popliteal artery | UBERON:0002250 | 94.39 | gold quality |
| thoracic aorta | UBERON:0001515 | 94.38 | gold quality |
| tibial artery | UBERON:0007610 | 94.38 | gold quality |
| vagina | UBERON:0000996 | 94.34 | gold quality |
| aorta | UBERON:0000947 | 94.30 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 94.26 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.84 |
HPA expression
RNA tissue specificity: Tissue enhanced
showing 60 of 80 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM | Protein (IHC) |
|---|---|---|---|
| Corpus callosum | tissue | 278.1 | |
| Locus coeruleus | tissue | 162.9 | |
| Spinal cord | tissue | 158.2 | |
| Medulla oblongata | tissue | 155.9 | |
| Substantia nigra | tissue | 154.1 | |
| Midbrain | tissue | 152.0 | |
| Pons | tissue | 140.8 | |
| Nucleus accumbens | tissue | 137.4 | |
| Thalamus | tissue | 136.1 | |
| Putamen | tissue | 135.2 | |
| Hippocampus | tissue | 133.6 | medium |
| Superior colliculi | tissue | 132.9 | |
| Postcentral gyrus | tissue | 128.0 | |
| Ventral forebrain | tissue | 127.0 | |
| Hypothalamus | tissue | 125.9 | |
| Periaqueductal gray | tissue | 124.8 | |
| Hippocampal formation | tissue | 108.2 | |
| Skeletal muscle | tissue | 106.2 | medium |
| Pituitary gland | tissue | 105.6 | |
| Septum | tissue | 105.4 | |
| Choroid plexus | tissue | 102.0 | |
| Basal ganglia | tissue | 90.9 | medium |
| Cerebral cortex | tissue | 82.6 | medium |
| Somatosensory cortex | tissue | 82.6 | |
| Retrosplenial cortex | tissue | 80.8 | |
| Amygdala | tissue | 78.8 | |
| Motor cortex | tissue | 76.6 | |
| Occipital cortex | tissue | 76.3 | |
| Insular cortex | tissue | 74.2 | |
| Caudate putamen | tissue | 72.4 | |
| Cerebellum | tissue | 71.8 | medium |
| Prefrontal cortex | tissue | 71.3 | |
| Retrosplenial and cingulate cortex | tissue | 70.9 | |
| Pancreas | tissue | 64.8 | medium |
| Entorhinal cortex | tissue | 63.8 | |
| Frontal cortex | tissue | 62.8 | |
| Olfactory bulb | tissue | 62.3 | |
| Temporal cortex | tissue | 62.2 | |
| Skin 1 | tissue | 60.2 | medium |
| Retina | tissue | 59.9 | |
| Salivary gland | tissue | 59.0 | medium |
| Vagina | tissue | 56.5 | medium |
| Tongue | tissue | 53.3 | |
| Adrenal gland | tissue | 51.9 | medium |
| Parathyroid gland | tissue | 51.5 | low |
| Heart muscle | tissue | 44.2 | not detected |
| Epididymis | tissue | 43.6 | medium |
| Thyroid gland | tissue | 41.7 | medium |
| Testis | tissue | 38.5 | medium |
| Fallopian tube | tissue | 38.2 | medium |
| Prostate | tissue | 37.7 | medium |
| Ovary | tissue | 35.8 | medium |
| Kidney | tissue | 34.7 | medium |
| Seminal vesicle | tissue | 33.8 | medium |
| Stomach 1 | tissue | 33.0 | low |
| Adipose tissue | tissue | 32.4 | medium |
| Lung | tissue | 30.1 | medium |
| Thymus | tissue | 26.8 | |
| Cervix | tissue | 26.3 | medium |
| Breast | tissue | 25.7 | medium |
Brain sub-regions (HPA Brain Atlas): detected in 192; highest nTPM — Parieto-temporal junction (white matter) (367.9), Temporal white matter (323.5), Corpus callosum, genu (white matter) (302.4), Corpus callosum, splenium (white matter) (292.8), White matter (278.1).
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
Targeting DNAJB2 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
showing 30 of 39 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-1323 | 99.83 | 69.89 | 2471 |
| HSA-MIR-4679 | 99.76 | 69.19 | 1229 |
| HSA-MIR-548O-3P | 99.74 | 69.30 | 2228 |
| HSA-MIR-3175 | 99.65 | 66.30 | 2031 |
| HSA-MIR-3679-3P | 99.64 | 69.88 | 1599 |
| HSA-MIR-1827 | 99.63 | 68.57 | 3265 |
| HSA-MIR-4310 | 99.59 | 68.84 | 2527 |
| HSA-MIR-4328 | 99.57 | 71.06 | 4094 |
| HSA-MIR-4649-3P | 99.56 | 66.90 | 1783 |
| HSA-MIR-451B | 99.55 | 68.28 | 1380 |
| HSA-MIR-2115-3P | 99.31 | 69.68 | 2026 |
| HSA-MIR-3978 | 99.24 | 68.39 | 2201 |
| HSA-MIR-6506-5P | 99.04 | 65.66 | 1386 |
| HSA-MIR-6814-5P | 99.03 | 66.68 | 1273 |
| HSA-MIR-452-3P | 99.01 | 66.25 | 1241 |
| HSA-MIR-330-5P | 98.73 | 67.63 | 1788 |
| HSA-MIR-619-5P | 98.57 | 64.97 | 1988 |
| HSA-MIR-326 | 98.25 | 66.44 | 1565 |
| HSA-MIR-3670 | 97.88 | 64.39 | 763 |
Functional genomics
gnomAD constraint: pLI 0.000221, LOEUF 0.836, missense Z 1.24 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD RMC): no regional variation along ENST00000336576 — one region, missense o/e 0.85.
Literature-anchored findings (GeneRIF, showing 13)
- data provide evidence that cytoplasmic chaperones HSJ1a and HSJ1b when targeted to the endoplasmic reticulum can influence the folding and processing of rhodopsin (PMID:12754272)
- HSJ1 is a neuronal shuttling factor for the sorting of chaperone clients to the proteasome. (PMID:15936278)
- Cystamine and cysteamine increase brain levels of BDNF in Huntington disease via HSJ1b and transglutaminase (PMID:16604191)
- Damaging exercise induced the expression of capZalpha, MCIP1, CARP1, DNAJB2, c-myc, and junD, each of which are likely involved in skeletal muscle growth, remodeling, and stress management. (PMID:18321953)
- Data show that DNAJB2 is expressed in skeletal muscle at the neuromuscular junction of normal fibers, in the cytoplasm and membrane of regenerating fibers, and in protein aggregates and vacuoles in protein aggregate myopathies. (PMID:20395441)
- a mutation causing a loss-of-function of HSJ1 is linked to a pure lower motor neuron disease, strongly suggesting that HSJ1 also plays an important and specific role in motor neurons. (PMID:22522442)
- HSJ1a acts on mutant SOD1 through a combination of chaperone, co-chaperone and pro-ubiquitylation activity. (PMID:24023695)
- The results of this study confirm that HSJ1 mutations are a rare but detectable cause of autosomal recessive dHMN and CMT2. (PMID:25274842)
- Study describes the identi fi cation of the fi rst deletion reported at the DNAJB2 locus, further expanding its phenotypic and genotypic spectrums as well as its disease-associated mechanisms with spinal muscular atrophy and parkinsonism. (PMID:27449489)
- Our results disclose a novel interplay between ubiquitin- and phosphorylation-dependent signalling, and represent the first report of a regulatory mechanism for UIM-dependent function. They also suggest that CK2 inhibitors could release the full neuroprotective potential of HSJ1, and deserve future interest as therapeutic strategies for neurodegenerative disease. (PMID:28031292)
- DNAJB2 expression in healthy human palatal mucosa is strongly negatively correlated with serum cotinine levels (PMID:31682009)
- DNAJB2-related Charcot-Marie-Tooth disease type 2: Pathomechanism insights and phenotypic spectrum widening. (PMID:35286755)
- The heat shock protein DNAJB2 as a novel biomarker for essential thrombocythemia diagnosis associated with immune infiltration. (PMID:36746103)
Cross-species orthologs
9 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Dnajb2 | ENSMUSG00000026203 |
| rattus_norvegicus | Dnajb2 | ENSRNOG00000019506 |
| drosophila_melanogaster | CG2887 | FBGN0030207 |
| drosophila_melanogaster | CG5001 | FBGN0031322 |
| drosophila_melanogaster | CG3061 | FBGN0038195 |
| drosophila_melanogaster | CG30156 | FBGN0050156 |
| drosophila_melanogaster | DnaJ-1 | FBGN0263106 |
| caenorhabditis_elegans | WBGENE00001019 | |
| caenorhabditis_elegans | WBGENE00001044 |
Paralogs (11): DNAJB11 (ENSG00000090520), DNAJB6 (ENSG00000105993), DNAJB9 (ENSG00000128590), DNAJB1 (ENSG00000132002), DNAJB5 (ENSG00000137094), DNAJB12 (ENSG00000148719), DNAJB4 (ENSG00000162616), DNAJB14 (ENSG00000164031), DNAJB7 (ENSG00000172404), DNAJB8 (ENSG00000179407), DNAJB13 (ENSG00000187726)
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:1928739) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 3 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| increased anxiety-related response | 1 |
| abnormal vocalization | 1 |
| abnormal coat/hair pigmentation | 1 |
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Pongo abelii | Q5R8H0 | 99.7% | Diamond |
| Bos taurus | Q2NL21 | 96.8% | Diamond |
| Macaca fascicularis | Q4R7Y5 | 96.1% | Diamond |
| Oryza sativa Japonica Group | A0A0P0VG31 | 94.7% | Diamond |
| Xenopus laevis | Q5FWN8 | 87.2% | Diamond |
| Xenopus tropicalis | Q6P642 | 87.2% | Diamond |
| Gallus gallus | Q5F3Z5 | 85.7% | Diamond |
| Macaca fuscata fuscata | Q862Z4 | 85.5% | Diamond |
| Saccharomyces cerevisiae S288C | P53863 | 66.7% | Diamond |
| Nakaseomyces glabratus CBS 138 | Q6FP17 | 60.6% | Diamond |
| Schizosaccharomyces pombe 972h- | O59731 | 54.5% | Diamond |
| Arabidopsis thaliana | Q39079 | 53.2% | Diamond |
| Plasmodium falciparum 3D7 | Q8IM77 | 38.2% | Diamond |
| Gammapolyomavirus avis | P13895 | 89.4% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| RESP18 | protein-coding | 389075 |
| MIR153-1 | ncRNA | 406944 |
| PTPRN | protein-coding | 5798 |
| ANKZF1 | protein-coding | 55139 |
| TUBA4A | protein-coding | 7277 |
| ATG9A | protein-coding | 79065 |
| GLB1L | protein-coding | 79411 |
| TUBA4B | protein-coding | 80086 |
| STK16 | protein-coding | 8576 |
Protein
Protein identifiers
DnaJ homolog subfamily B member 2 — P25686 (reviewed: P25686)
Alternative names: Heat shock 40 kDa protein 3, Heat shock protein J1
All UniProt accessions (6): C9J1G2, C9JRD2, C9JX00, C9JXB9, E7ETU0, P25686
UniProt curated annotations — full annotation on UniProt →
Function. Functions as a co-chaperone, regulating the substrate binding and activating the ATPase activity of chaperones of the HSP70/heat shock protein 70 family. In parallel, also contributes to the ubiquitin-dependent proteasomal degradation of misfolded proteins. Thereby, may regulate the aggregation and promote the functional recovery of misfolded proteins like HTT, MC4R, PRKN, RHO and SOD1 and be crucial for many biological processes. Isoform 1 which is localized to the endoplasmic reticulum membranes may specifically function in ER-associated protein degradation of misfolded proteins.
Subunit / interactions. Interacts with HSP70 (HSPA1A or HSPA1B). Interacts with HSPA8/Hsc70. Interacts with PSMA3 and most probably with the whole proteasomal complex.
Subcellular location. Cytoplasm. Nucleus Endoplasmic reticulum membrane.
Tissue specificity. More abundantly expressed in neocortex, cerebellum, spinal cord and retina where it is expressed by neuronal cells (at protein level). Detected at much lower level in non-neuronal tissues including kidney, lung, heart, skeletal muscle, spleen and testis (at protein level). Isoform 1 is more abundant in neocortex and cerebellum compared to isoform 2 (at protein level).
Post-translational modifications. Ubiquitinated by STUB1; does not lead to proteasomal degradation.
Disease relevance. Neuronopathy, distal hereditary motor, autosomal recessive 5 (HMNR5) [MIM:614881] A form of distal hereditary motor neuronopathy, a heterogeneous group of neuromuscular disorders caused by selective degeneration of motor neurons in the anterior horn of the spinal cord, without sensory deficit in the posterior horn. The overall clinical picture consists of a classical distal muscular atrophy syndrome in the legs without clinical sensory loss. The disease starts with weakness and wasting of distal muscles of the anterior tibial and peroneal compartments of the legs. Later on, weakness and atrophy may expand to the proximal muscles of the lower limbs and/or to the distal upper limbs. HMNR5 is characterized by young adult onset of slowly progressive distal muscle weakness and atrophy resulting in gait impairment and loss of reflexes. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The J domain is sufficient to interact with HSP70 (HSPA1A or HSPA1B) and activate its ATPase activity. The J domain is also required for the HSP70-mediated and ubiquitin-dependent proteasomal degradation of proteins like ATXN3. The J domain is required to reduce PRKN cytoplasmic aggregation. The UIM domains mediate interaction with ubiquitinated chaperone clients and with the proteasome. The UIM domains may have an opposite activity to the J domain, binding ubiquitinated proteins and protecting them from HSP70-mediated proteasomal degradation. The UIM domains are not required to reduce PRKN cytoplasmic aggregation.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P25686-3 | 1, HSJ1b | yes |
| P25686-2 | 2, HSJ1a, DNAJB2a |
RefSeq proteins (2): NP_001034639, NP_006727* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001623 | DnaJ_domain | Domain |
| IPR003903 | UIM_dom | Conserved_site |
| IPR018253 | DnaJ_domain_CS | Conserved_site |
| IPR036869 | J_dom_sf | Homologous_superfamily |
| IPR043183 | DNJB2/6-like | Family |
Pfam: PF00226
UniProt features (35 total): mutagenesis site 8, helix 4, compositionally biased region 3, modified residue 3, domain 3, splice variant 2, sequence variant 2, region of interest 2, initiator methionine 1, chain 1, lipid moiety-binding region 1, propeptide 1, sequence conflict 1, strand 1, turn 1, short sequence motif 1
Structure
Experimental structures (PDB)
1 structures by resolution:
| PDB | Title | Method | Resolution (Å) |
|---|---|---|---|
| 2LGW | Solution Structure of the J Domain of HSJ1a | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P25686-F1 | 68.73 | 0.25 |
Human Protein Atlas
Protein class: Predicted intracellular proteins, Disease related genes, Human disease related genes
Protein evidence: Evidence at protein level
Subcellular location (HPA, imaging): nuclear membrane
Antibody reliability (HPA): IH approved · IF enhanced
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (4)
| Type | Positions |
|---|---|
| N-acetylalanine | 2 |
| Phosphoserine | 311 |
| Cysteine methyl ester | 321 |
| S-geranylgeranyl cysteine | 321 |
Mutagenesis-validated functional residues (8)
| Position | Phenotype |
|---|---|
| 31–33 | loss of interaction with hsp70 and loss of the ability to promote atxn3 proteasomal degradation. |
| 31 | probable loss of interaction with hsp70 and loss of the ability to reduce prkn aggregation. |
| 219 | loss of interaction with polyubiquitin chains, loss of interaction with psma3, and loss of the ability to protect atxn3 from proteasomal … |
| 222 | loss of interaction with polyubiquitin chains, loss of interaction with psma3, and loss of the ability to protect atxn3 from proteasomal … |
| 262 | loss of interaction with polyubiquitin chains, loss of interaction with psma3, and loss of the ability to protect atxn3 from proteasomal … |
| 265 | loss of interaction with polyubiquitin chains, loss of interaction with psma3, and loss of the ability to protect atxn3 from proteasomal … |
| 321 | loss of localization to the endoplasmic reticulum and relocalization to cytoplasm and nucleus. |
| 324 | no effect on localization to the endoplasmic reticulum membrane. |
Function
Pathways and Gene Ontology
Reactome pathways
0 curated (TAS) of 0; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
MSigDB gene sets: 335 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_DN, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, MULLIGHAN_NPM1_SIGNATURE_3_UP, GOBP_REGULATION_OF_PROTEASOMAL_UBIQUITIN_DEPENDENT_PROTEIN_CATABOLIC_PROCESS, GOBP_REGULATION_OF_PROTEIN_BINDING, PAX4_01, ENK_UV_RESPONSE_KERATINOCYTE_UP, GOBP_RESPONSE_TO_ENDOPLASMIC_RETICULUM_STRESS, GOBP_NEGATIVE_REGULATION_OF_CELL_GROWTH, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, GOBP_GROWTH, GOBP_POSITIVE_REGULATION_OF_PROTEIN_CATABOLIC_PROCESS, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS
GO Biological Process (17): protein folding (GO:0006457), response to unfolded protein (GO:0006986), negative regulation of cell population proliferation (GO:0008285), negative regulation of cell growth (GO:0030308), regulation of protein ubiquitination (GO:0031396), positive regulation of protein ubiquitination (GO:0031398), negative regulation of protein binding (GO:0032091), positive regulation of proteasomal ubiquitin-dependent protein catabolic process (GO:0032436), positive regulation of ATP-dependent activity (GO:0032781), regulation of protein localization (GO:0032880), ERAD pathway (GO:0036503), protein refolding (GO:0042026), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161), neuron cellular homeostasis (GO:0070050), negative regulation of inclusion body assembly (GO:0090084), negative regulation of protein deubiquitination (GO:0090086), regulation of protein folding (GO:1903332)
GO Molecular Function (11): ATPase activator activity (GO:0001671), Hsp70 protein binding (GO:0030544), polyubiquitin modification-dependent protein binding (GO:0031593), ubiquitin protein ligase binding (GO:0031625), ubiquitin binding (GO:0043130), protein-folding chaperone binding (GO:0051087), proteasome binding (GO:0070628), protein serine/threonine kinase binding (GO:0120283), ubiquitin-modified protein reader activity (GO:0140036), protein transporter activity (GO:0140318), protein binding (GO:0005515)
GO Cellular Component (9): proteasome complex (GO:0000502), nucleus (GO:0005634), cytoplasm (GO:0005737), endoplasmic reticulum membrane (GO:0005789), cytosol (GO:0005829), inclusion body (GO:0016234), nuclear membrane (GO:0031965), perinuclear region of cytoplasm (GO:0048471), cytoplasmic side of endoplasmic reticulum membrane (GO:0098554)
GO top-level categories
showing 60 of 62 GO namespaces:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| negative regulation of cellular process | 2 |
| protein ubiquitination | 2 |
| protein binding | 2 |
| ATP-dependent activity | 2 |
| proteasomal protein catabolic process | 2 |
| protein folding | 2 |
| intracellular anatomical structure | 2 |
| organelle membrane | 2 |
| cytoplasm | 2 |
| cellular process | 1 |
| protein maturation | 1 |
| response to topologically incorrect protein | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| regulation of cell growth | 1 |
| cell growth | 1 |
| negative regulation of growth | 1 |
| regulation of protein modification by small protein conjugation or removal | 1 |
| regulation of protein ubiquitination | 1 |
| positive regulation of protein modification by small protein conjugation or removal | 1 |
| regulation of protein binding | 1 |
| negative regulation of binding | 1 |
| regulation of proteasomal ubiquitin-dependent protein catabolic process | 1 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 1 |
| positive regulation of proteasomal protein catabolic process | 1 |
| positive regulation of ubiquitin-dependent protein catabolic process | 1 |
| regulation of ATP-dependent activity | 1 |
| positive regulation of molecular function | 1 |
| intracellular protein localization | 1 |
| regulation of localization | 1 |
| response to endoplasmic reticulum stress | 1 |
| response to chemical | 1 |
| ubiquitin-dependent protein catabolic process | 1 |
| cellular homeostasis | 1 |
| negative regulation of cellular component organization | 1 |
| inclusion body assembly | 1 |
| regulation of inclusion body assembly | 1 |
| protein deubiquitination | 1 |
| regulation of protein deubiquitination | 1 |
| negative regulation of protein modification by small protein conjugation or removal | 1 |
| regulation of cellular process | 1 |
| molecular function activator activity | 1 |
| heat shock protein binding | 1 |
| protein-folding chaperone binding | 1 |
| modification-dependent protein binding | 1 |
| ubiquitin-like protein ligase binding | 1 |
| ubiquitin-like protein binding | 1 |
| protein-containing complex binding | 1 |
| protein kinase binding | 1 |
| ubiquitin-like protein reader activity | 1 |
| transporter activity | 1 |
| binding | 1 |
| intracellular protein-containing complex | 1 |
| endopeptidase complex | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| nucleus | 1 |
| nuclear envelope | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 32 of 38 annotations. The rest are phylogenetic / computational / electronic (IEA).
32 experimentally-supported GO terms:
Protein interactions and networks
STRING
showing 15 of 1,674 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DNAJB2 | HSPB8 | Q9UJY1 | 703 |
| DNAJB2 | DNAJC6 | O75061 | 668 |
| DNAJB2 | DNAJC13 | O75165 | 666 |
| DNAJB2 | HSPA1A | P08107 | 614 |
| DNAJB2 | GRPEL1 | Q9HAV7 | 608 |
| DNAJB2 | DNAJC28 | Q9NX36 | 602 |
| DNAJB2 | SACS | Q9NZJ4 | 552 |
| DNAJB2 | DNAJC19 | Q96DA6 | 515 |
| DNAJB2 | HSPB3 | Q12988 | 505 |
| DNAJB2 | DNAJC12 | Q9UKB3 | 498 |
| DNAJB2 | IGHMBP2 | P38935 | 497 |
| DNAJB2 | DNAJB12 | Q9NXW2 | 474 |
| DNAJB2 | HSPA4 | P34932 | 473 |
| DNAJB2 | HSPA8 | P11142 | 472 |
| DNAJB2 | BAG2 | O95816 | 465 |
IntAct
Human interaction partners of DNAJB2 in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
12 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| MLF1 | physical association | 0.560 | 1 |
| UBQLN1 | physical association | 0.460 | 2 |
| RPS27A | direct interaction | 0.440 | 1 |
| MLF2 | physical association | 0.400 | 1 |
| PSMD2 | physical association | 0.400 | 1 |
| ECE1 | physical association | 0.370 | 1 |
| SMAD4 | physical association | 0.370 | 1 |
| UBB | association | 0.350 | 2 |
| DNAJB6 | association | 0.350 | 1 |
| NSMCE4A | association | 0.350 | 1 |
| UBA1 | ubiquitination reaction | 0.000 | 1 |
| VPS26C | physical association | 0.000 | 1 |
BioGRID (178 interactions; top human partners by supporting records): HSPA4 (Co-localization; 4 records), UBC (Reconstituted Complex; 4 records), BIRC2 (Affinity Capture-MS; 3 records), CTSA (Affinity Capture-MS; 3 records), CYHR1 (Affinity Capture-MS; 3 records), DNAJB6 (Affinity Capture-MS; 3 records), DNAJB8 (Affinity Capture-MS; 3 records), FAM83H (Affinity Capture-MS; 3 records), GLB1 (Affinity Capture-MS; 3 records), HSPA8 (Affinity Capture-MS; 3 records), LACC1 (Affinity Capture-MS; 3 records), NSMCE4A (Affinity Capture-MS; 3 records), RFWD3 (Affinity Capture-MS; 3 records), RHO (Co-localization; 3 records), RNF19B (Affinity Capture-MS; 3 records)
Protein complexes (CORUM) (1)
Experimentally-characterized complexes this protein is a subunit of (★ = the complex contains a known drug target).
1 complexes by size:
| Complex | Subunits | Members |
|---|---|---|
| DNAJB2-HSPA8-PSMA3 complex | 3 | DNAJB2, HSPA8, PSMA3 |
Disease & clinical
Genetic variants
Variant evidence for DNAJB2: 345 ClinVar records (25 pathogenic / likely pathogenic). Per-variant detail is on Sugi Variant.
ClinVar
345 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 10 |
| Likely pathogenic | 15 |
| Uncertain significance | 134 |
| Likely benign | 154 |
| Benign | 18 |
Top pathogenic / likely-pathogenic (15)
Showing the 15 best-reviewed of 25 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 217886 | NM_006736.6(DNAJB2):c.352+1G>A | Pathogenic | criteria provided, multiple submitters, no conflicts | 11 |
| 1441902 | NM_006736.6(DNAJB2):c.119_120del (p.Glu40fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 1709938 | NM_006736.6(DNAJB2):c.65+1G>A | Likely pathogenic | criteria provided, multiple submitters, no conflicts | 2 |
| 183041 | NM_006736.6(DNAJB2):c.229+1G>A | Pathogenic | criteria provided, single submitter | 4 |
| 209147 | NM_006736.6(DNAJB2):c.343G>T (p.Glu115Ter) | Pathogenic | criteria provided, single submitter | 1 |
| 246691 | NM_006736.6(DNAJB2):c.620-1G>A | Pathogenic | criteria provided, single submitter | 1 |
| 864789 | NM_006736.6(DNAJB2):c.394C>T (p.Arg132Ter) | Pathogenic | criteria provided, single submitter | 1 |
| 1452257 | NM_006736.6(DNAJB2):c.204T>G (p.Tyr68Ter) | Pathogenic | criteria provided, single submitter | 1 |
| 1789094 | NM_006736.6(DNAJB2):c.229+2T>A | Pathogenic | criteria provided, single submitter | 1 |
| 1895597 | NM_006736.6(DNAJB2):c.118G>T (p.Glu40Ter) | Pathogenic | criteria provided, single submitter | 1 |
| 183042 | NM_006736.6(DNAJB2):c.14A>G (p.Tyr5Cys) | Likely pathogenic | criteria provided, single submitter | 4 |
| 243085 | NM_006736.6(DNAJB2):c.310del (p.Arg104fs) | Likely pathogenic | criteria provided, single submitter | 1 |
| 623377 | NM_006736.6(DNAJB2):c.446-2A>G | Likely pathogenic | criteria provided, single submitter | 1 |
| 873313 | NM_006736.6(DNAJB2):c.757G>A (p.Glu253Lys) | Likely pathogenic | criteria provided, single submitter | 1 |
| 1464699 | NM_006736.6(DNAJB2):c.446-1G>A | Likely pathogenic | criteria provided, single submitter | 1 |
Per-variant reference — Sugi Variant
Explore DNAJB2’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 34 predictions of 860):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 2:219279899–219279900 | donor_loss | 1.0000 | 4 |
| 2:219281772–219281773 | donor_loss | 1.0000 | 5 |
| 2:219281928 | acceptor_gain | 1.0000 | |
| 2:219281937–219281938 | acceptor_loss | 1.0000 | 5 |
| 2:219282062–219282063 | donor_loss | 1.0000 | 4 |
| 2:219283124 | acceptor_gain | 1.0000 | |
| 2:219279796–219279797 | acceptor_loss | 0.9900 | 6 |
| 2:219279899–219279900 | donor_loss | 0.9900 | 2 |
| 2:219280576–219280577 | acceptor_loss | 0.9900 | 5 |
| 2:219280667 | donor_gain | 0.9900 |
AlphaMissense
675 missense substitutions predicted likely pathogenic (of 2,095 scored), across 159 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| H31 | 8 | 0.998 | 1.000 |
| D33 | 8 | 0.996 | 0.998 |
| F46 | 8 | 0.995 | 1.000 |
| F103 | 8 | 0.992 | 0.999 |
| F107 | 8 | 0.989 | 0.999 |
| N35 | 8 | 0.961 | 0.997 |
| F96 | 8 | 0.960 | 0.998 |
| F113 | 8 | 0.960 | 0.991 |
| D66 | 8 | 0.942 | 0.992 |
| D58 | 8 | 0.914 | 0.981 |
| F106 | 8 | 0.911 | 0.996 |
| F117 | 8 | 0.872 | 0.950 |
| W30 | 7 | 0.995 | 1.000 |
| F94 | 7 | 0.974 | 0.997 |
| E54 | 7 | 0.963 | 0.991 |
| D111 | 7 | 0.888 | 0.938 |
| D210 | 7 | 0.869 | 0.920 |
| F92 | 7 | 0.826 | 0.963 |
| E43 | 7 | 0.823 | 0.930 |
| E193 | 7 | 0.821 | 0.939 |
HPA cancer prognostics
RNA cancer specificity: Low cancer specificity
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
3 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Liver Hepatocellular Carcinoma (TCGA) | unfavorable | 2.35e-05 |
| Kidney Renal Clear Cell Carcinoma (TCGA) | favorable | 0.000425 |
| Pancreatic Adenocarcinoma (validation) | unfavorable | 0.000571 |
Disease associations
OMIM: gene MIM:604139 | disease phenotypes: MIM:614881, MIM:605726, MIM:118220, MIM:302800, MIM:302900
GenCC curated gene-disease
2 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| neuronopathy, distal hereditary motor, autosomal recessive 5 | Definitive | Autosomal recessive | 4 |
| Charcot-Marie-Tooth disease axonal type 2T | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
1 validity classifications:
| Disease | Classification | Inheritance |
|---|---|---|
| neuronopathy, distal hereditary motor, autosomal recessive 5 | Definitive | AR |
Genomics England panels (PanelApp)
Clinical diagnostic gene panels including this gene (4 panels, 4 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.
4 panels:
| Panel | Rating |
|---|---|
| Adult-onset neurological disorders | green |
| Hereditary neuropathy | green |
| Hereditary neuropathy or pain disorder | green |
| Neurodegenerative disorders, adult onset | green |
Mondo (5): neuronopathy, distal hereditary motor, autosomal recessive 5 (MONDO:0013947), autosomal recessive distal spinal muscular atrophy 2 (MONDO:0011585), Charcot-Marie-Tooth disease (MONDO:0015626), Charcot-Marie-Tooth disease X-linked dominant 1 (MONDO:0010549), (MONDO:0014866)
Orphanet (5): Young adult-onset distal hereditary motor neuropathy (Orphanet:314485), DNAJB2-related Charcot-Marie-Tooth disease type 2 (Orphanet:443950), Distal hereditary motor neuropathy, Jerash type (Orphanet:139552), Charcot-Marie-Tooth disease/Hereditary motor and sensory neuropathy (Orphanet:166), X-linked Charcot-Marie-Tooth disease type 1 (Orphanet:101075)
HPO phenotypes
12 phenotypes (HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0001284 | Areflexia |
| HP:0001288 | Gait disturbance |
| HP:0001618 | Dysphonia |
| HP:0001761 | Pes cavus |
| HP:0002460 | Distal muscle weakness |
| HP:0002936 | Distal sensory impairment |
| HP:0003677 | Slowly progressive |
| HP:0007269 | Spinal muscular atrophy |
| HP:0008944 | Distal lower limb amyotrophy |
| HP:0009027 | Foot dorsiflexor weakness |
| HP:0011462 | Young adult onset |
MeSH disease descriptors
3 disease descriptors:
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002607 | Charcot-Marie-Tooth Disease | C10.500.300.200; C10.574.500.495.200; C10.668.829.800.300.200; C16.131.666.300.200; C16.320.400.375.200 |
| C564446 | Charcot-Marie-Tooth Peroneal Muscular Atrophy and Friedreich Ataxia, Combined *(supp.)* | |
| C535715 | Spinal muscular atrophy, Jerash type *(supp.)* |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (CPIC guideline: no)
CTD chemical–gene interactions
63 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Cisplatin | affects cotreatment, decreases expression, increases expression, affects expression | 4 |
| Cyclosporine | increases expression, decreases expression | 4 |
| Benzo(a)pyrene | affects methylation, decreases methylation, increases expression | 3 |
| Aflatoxin B1 | affects expression, decreases methylation, increases expression | 3 |
| Cadmium Chloride | decreases expression, increases expression | 3 |
| sodium arsenite | increases expression, affects cotreatment, decreases expression, increases abundance | 2 |
| Cadmium | increases expression | 2 |
| Tobacco Smoke Pollution | affects expression, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| GSK-J4 | increases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| beta-N-methylamino-L-alanine | increases expression | 1 |
| chloroacetaldehyde | increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, affects localization, increases expression | 1 |
| trichostatin A | increases expression | 1 |
| beta-lapachone | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| manganese chloride | increases abundance, affects cotreatment, decreases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| dinophysistoxin 1 | increases expression | 1 |
| oxidized-L-alpha-1-palmitoyl-2-arachidonoyl-sn-glycero-3-phosphorylcholine | affects expression, increases reaction | 1 |
| erucylphospho-N,N,N-trimethylpropylammonium | increases expression | 1 |
| abrine | increases expression | 1 |
| darinaparsin | increases expression | 1 |
| eprenetapopt | increases expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| PCI 5002 | increases expression, affects cotreatment | 1 |
| Decitabine | affects expression | 1 |
| Sunitinib | decreases expression | 1 |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
59 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT04762758 | Phase 3 | UNKNOWN | Phase III Trial Assessing the Efficacy and Safety of PXT3003 in CMT1A Patients |
| NCT00271635 | Phase 2 | COMPLETED | Ascorbic Acid Treatment in CMT1A Trial (AATIC) |
| NCT01401257 | Phase 2 | COMPLETED | Phase II, Randomized, Placebo-controlled Trial in Patients With Charcot-marie-tooth Disease Type 1A |
| NCT02561702 | Phase 2 | COMPLETED | Mexiletine for Muscle Cramps in Charcot Marie Tooth Disease |
| NCT02967679 | Phase 2 | COMPLETED | SERENDEM : MD1003 in Patients Suffering From Demyelinating Neuropathies, an Open Label Pilot Study |
| NCT03124459 | Phase 2 | TERMINATED | Study of ACE-083 in Patients With Charcot-Marie-Tooth Disease |
| NCT03254199 | Phase 2 | TERMINATED | A Study to Assess the Safety and Effectiveness of FLX-787 in Subjects With Charcot-Marie-Tooth Disease Experiencing Muscle Cramps. |
| NCT03943290 | Phase 2 | TERMINATED | Extension Study to Evaluate the Long-Term Effects of ACE-083 in Patients With Facioscapulohumeral Muscular Dystrophy (FSHD) and Charcot-Marie Tooth (CMT) Disease Types 1 and X (CMT1 and CMTX) |
| NCT05777226 | Phase 2 | UNKNOWN | Research of SORD-CMT Natural History and Epalrestat Treatment |
| NCT06482437 | Phase 2 | COMPLETED | Safety and Efficacy of NMD670 in Adult Patients With Type 1 and Type 2 Charcot-Marie-Tooth Disease |
| NCT01289704 | Phase 2/3 | UNKNOWN | Treadmill, Stretching and Proprioceptive Exercise (TreSPE) Rehabilitation Program for Charcot-Marie-Tooth Neuropathy Type 1A (CMT1A) |
| NCT00541164 | Phase 1/2 | COMPLETED | Effects of Coenzyme Q10 on Charcot-Marie-Tooth Disease |
| NCT05361031 | Phase 1/2 | COMPLETED | The Safety and Tolerability of Engensis (VM202) in Patients With Charcot-Marie-Tooth Disease Subtype 1A (CMT1A) |
| NCT07223632 | Phase 1/2 | ACTIVE_NOT_RECRUITING | Treatment of Charcot-Marie-Tooth Disease, Axonal, Type 2S (CMT2S) in an Individual Patient |
| NCT00149045 | Not specified | COMPLETED | Follow up and Observation of Charcot Marie Tooth Disease in Families |
| NCT01193075 | Not specified | RECRUITING | Natural History Evaluation of Charcot Marie Tooth Disease (CMT) Types CMT1B, CMT2A, CMT4A, CMT4C, and Others |
| NCT01203085 | Not specified | COMPLETED | Development of Charcot Marie Tooth Disease (CMT) Pediatric Scale for Children With CMT |
| NCT01455623 | Not specified | COMPLETED | Development and Validation of a Disability Severity Index for CMT |
| NCT01918826 | Not specified | COMPLETED | Evaluation of the Analgesic Efficiency of the Transcutaneous Neurostimulation in the Charcot Syndrome Marie Tooth on the Pains of Lower Limbs |
| NCT02001038 | Not specified | COMPLETED | Survey of Current Management of Orthopaedic Complications in CMT Patients |
| NCT02011204 | Not specified | COMPLETED | Study of Electrical Impedance Myography (EIM) in ALS |
| NCT02194010 | Not specified | COMPLETED | Disability Severity Scale (DSI) and Hereditary Motor and Sensory Neuropathy Overall Disability Scale (HMSN-R-ODS) |
| NCT02429947 | Not specified | COMPLETED | An Analysis of the Symptomatic Domains Most Relevant to Charcot Marie Tooth Neuropathy (CMT) Patients |
| NCT02532244 | Not specified | COMPLETED | Genetics of Pediatric-Onset Motor Neuron and Neuromuscular Diseases |
| NCT02699190 | Not specified | COMPLETED | LeukoSEQ: Whole Genome Sequencing as a First-Line Diagnostic Tool for Leukodystrophies |
| NCT02788734 | Not specified | COMPLETED | Patient Reported Outcomes Measures (PROM) in Carpal Tunnel Therapies in Patients With Inherited Neuropathies |
| NCT02979145 | Not specified | UNKNOWN | Charcot-Marie-Tooth Disease (CMT) Infant Scale (INC-6611) |
| NCT03047369 | Not specified | RECRUITING | The Myelin Disorders Biorepository Project |
| NCT03460951 | Not specified | COMPLETED | Diffusion Tensor Imaging in Chronic Inflammatory Demyelinating Polyneuropathy (PIDC) |
| NCT03715283 | Not specified | COMPLETED | Change in MUNIX in Patients With CMT1A Undergoing a Home Ankle Strengthening Program Versus Standard of Care |
| NCT03782883 | Not specified | COMPLETED | The Impact of Charcot-Marie-Tooth Disease in the Real World |
| NCT03810508 | Not specified | TERMINATED | A Natural History Study of Charcot-Marie-Tooth 4J (CMT4J) |
| NCT03966287 | Not specified | COMPLETED | Analysis of Pain and Quality of Life in Patients With Charcot-Marie-Tooth Neuropathy (CMT) |
| NCT04010188 | Not specified | RECRUITING | A Registered Cohort Study on Charcot-Marie-Tooth Disease |
| NCT04283175 | Not specified | COMPLETED | Validation Study of Posturology Platforms for Evaluating Postural Control of Hemiparetic and Neuro-muscular Patients |
| NCT04461613 | Not specified | UNKNOWN | Physical Activity in Persons With Charcot-Marie-Tooth: Developing a Measurement Instrument |
| NCT04786522 | Not specified | COMPLETED | Irisin Levels in Patients With Charcot-Marie-Tooth (CMT) Disease |
| NCT04967716 | Not specified | UNKNOWN | Genetics of Charcot-Marie-Tooth Dystrophy and Related Diseases |
| NCT04980807 | Not specified | COMPLETED | Observational Study of Neuromuscular Function in CMT Type 1&2 and Healthy Controls |
| NCT05011006 | Not specified | TERMINATED | NT-3 Levels and Function in Individuals With CMT |
| NCT05827419 | Not specified | TERMINATED | Hearing and Balance Disorders in Peripheral Neuropathy |
| NCT05902351 | Not specified | RECRUITING | Natural History Study for Charcot Marie Tooth Disease |
| NCT06203093 | Not specified | UNKNOWN | Charcot-Marie-Tooth Disease (CMT) Biological Sample Collection for IPSC Generation and Biobanking |
| NCT06666816 | Not specified | RECRUITING | Observational Study to Observe Variations of Gait Parameters in Patients With Neuromuscular Diseases |
| NCT06708468 | Not specified | RECRUITING | Personalized Training for People With Rare Neuromuscular Disorders |
| NCT06794489 | Not specified | RECRUITING | Longitudinal Biomarkers With Selected Outcome Measures In CMT |
| NCT06808581 | Not specified | COMPLETED | EVALUATION OF SERUM INFLAMMATORY CYTOKINE CONCENTRATION IN HEREDITARY SENSITIVOMOTOR NEUROPATHIES |
| NCT06881979 | Not specified | RECRUITING | High-Tech Rehabilitation Pathway for Chronic Adult Neuromuscular Diseases - Fit4MedRob-Chronic MND Project |
| NCT06945835 | Not specified | COMPLETED | High Intensity Exercise and Improving Physical Activity Among People With Neurologic Dysfunction |
| NCT07038239 | Not specified | RECRUITING | Genotype/Phenotype Correlation of MORC2 Mutations |
| NCT07072676 | Not specified | ENROLLING_BY_INVITATION | The Use of Assistive Gait Devices Can Reduce the Risk of Falls in Patients With Neuromuscular Diseases Following a Training Period. |
| NCT07136844 | Not specified | RECRUITING | Gait Analysis Parameter and Upper Limb Evaluation in Adult Patients With Neurological or Metabolic Pathology |
| NCT07152197 | Not specified | RECRUITING | Effects of Resistance Exercises in Hereditary Sensory-Motor Neuropathy (Charcot-Marie-Tooth Disease) |
| NCT07188415 | Not specified | RECRUITING | CMT Gait, Mobility, Balance - AOFAS Grant |
| NCT07432035 | Not specified | NOT_YET_RECRUITING | Walking Function Outcomes Following Surgical Correction With Rehabilitation Versus Physical Therapy Alone in Charcot-Marie-Tooth Disease: A Bidirectional Cohort Study |
| NCT07476365 | Not specified | RECRUITING | A Multi-omic Approach to the Identification of Novel Biomarkers in Early Charcot-Marie-Tooth 1A Disease (CMT1A) |
| NCT07478172 | Not specified | RECRUITING | Effects of Whole-body Electrical Muscle Stimulation Exercise on Adults With Neuromuscular Disease |
| NCT07570446 | Not specified | RECRUITING | AUTONOMOUS DISORDERS IN CMT |
| NCT07570459 | Not specified | RECRUITING | TREMOR IN CHARCOT-MARIE-TOOTH |
Related Atlas pages
- Associated diseases: neuronopathy, distal hereditary motor, autosomal recessive 5, Charcot-Marie-Tooth disease type 2T
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal recessive distal spinal muscular atrophy 2, Charcot-Marie-Tooth disease type 2, Charcot-Marie-Tooth disease X-linked dominant 1, neuronopathy, distal hereditary motor, autosomal recessive 5