DNAJC1
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Also known as DNAJL1ERdj1MTJ1
Summary
DNAJC1 (DnaJ heat shock protein family (Hsp40) member C1, HGNC:20090) is a protein-coding gene on chromosome 10p12.31, encoding DnaJ homolog subfamily C member 1 (Q96KC8). May modulate protein synthesis.
The membrane protein encoded by this gene is a DNAJ-like heat shock protein that binds the molecular chaperone BiP. In addition, the encoded protein contains two SANT domains that have been shown to bind serpin alpha1-antichymotrypsin and inter-alpha trypsin inhibitor heavy chain 4.
Source: NCBI Gene 64215 — RefSeq curated summary.
At a glance
- GWAS associations: 23
- Clinical variants (ClinVar): 94 total
- MANE Select transcript:
NM_022365
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:20090 |
| Approved symbol | DNAJC1 |
| Name | DnaJ heat shock protein family (Hsp40) member C1 |
| Location | 10p12.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DNAJL1, ERdj1, MTJ1 |
| Ensembl gene | ENSG00000136770 |
| Ensembl biotype | protein_coding |
| OMIM | 611207 |
| Entrez | 64215 |
Gene structure
Transcript identifiers
Ensembl transcripts: 14 — 10 protein_coding, 2 protein_coding_CDS_not_defined, 1 retained_intron, 1 nonsense_mediated_decay
ENST00000376946, ENST00000376980, ENST00000447548, ENST00000476103, ENST00000483085, ENST00000883424, ENST00000883425, ENST00000883426, ENST00000883427, ENST00000883428, ENST00000883429, ENST00000963963, ENST00000963964, ENST00000963965
RefSeq mRNA: 1 — MANE Select: NM_022365
NM_022365
CCDS: CCDS7136
Canonical transcript exons
ENST00000376980 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000985308 | 21904522 | 21904612 |
| ENSE00000985309 | 21882282 | 21882439 |
| ENSE00000985312 | 21759170 | 21759618 |
| ENSE00001092009 | 21918779 | 21918872 |
| ENSE00001092011 | 21919832 | 21919929 |
| ENSE00001472326 | 21756548 | 21756755 |
| ENSE00001940957 | 22003213 | 22003730 |
| ENSE00003578087 | 21805980 | 21806099 |
| ENSE00003579669 | 21766261 | 21766309 |
| ENSE00003689081 | 21920798 | 21920963 |
| ENSE00003755754 | 21929040 | 21929141 |
| ENSE00003759943 | 21928506 | 21928552 |
Expression profiles
Bgee: expression breadth ubiquitous, 278 present calls, max score 99.86.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 26.8964 / max 437.1018, expressed in 1817 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 108639 | 24.9087 | 1817 |
| 108638 | 0.9875 | 582 |
| 108640 | 0.6161 | 399 |
| 108637 | 0.3841 | 185 |
Top tissues by expression
286 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 99.86 | gold quality |
| pylorus | UBERON:0001166 | 99.24 | gold quality |
| cardia of stomach | UBERON:0001162 | 98.68 | gold quality |
| oocyte | CL:0000023 | 98.28 | gold quality |
| parotid gland | UBERON:0001831 | 98.24 | gold quality |
| lower lobe of lung | UBERON:0008949 | 98.24 | gold quality |
| mammary duct | UBERON:0001765 | 97.76 | gold quality |
| pericardium | UBERON:0002407 | 97.65 | gold quality |
| renal medulla | UBERON:0000362 | 97.60 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 97.58 | gold quality |
| tibia | UBERON:0000979 | 97.57 | gold quality |
| jejunal mucosa | UBERON:0000399 | 97.44 | gold quality |
| cauda epididymis | UBERON:0004360 | 97.44 | gold quality |
| sperm | CL:0000019 | 97.21 | gold quality |
| superficial temporal artery | UBERON:0001614 | 97.20 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 97.19 | gold quality |
| nipple | UBERON:0002030 | 97.06 | gold quality |
| visceral pleura | UBERON:0002401 | 96.95 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 96.60 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 96.34 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 96.32 | gold quality |
| oral cavity | UBERON:0000167 | 96.27 | gold quality |
| superior surface of tongue | UBERON:0007371 | 96.22 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 96.19 | gold quality |
| caput epididymis | UBERON:0004358 | 96.06 | gold quality |
| urethra | UBERON:0000057 | 96.00 | gold quality |
| trachea | UBERON:0003126 | 95.91 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 95.82 | gold quality |
| gingiva | UBERON:0001828 | 95.82 | gold quality |
| saphenous vein | UBERON:0007318 | 95.76 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-88 | yes | 80.11 |
| E-HCAD-4 | yes | 38.65 |
| E-CURD-122 | yes | 36.98 |
| E-CURD-46 | yes | 32.00 |
| E-MTAB-8410 | yes | 28.21 |
| E-ANND-3 | yes | 22.04 |
| E-MTAB-8271 | no | 522.74 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| VEGFA |
miRNA regulators (miRDB)
32 targeting DNAJC1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
| HSA-MIR-98-5P | 99.98 | 72.33 | 1787 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-LET-7D-5P | 99.96 | 71.76 | 1632 |
| HSA-MIR-4458 | 99.96 | 71.64 | 1650 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-5680 | 99.91 | 69.83 | 3421 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-6124 | 99.87 | 69.78 | 3551 |
| HSA-MIR-544A | 99.84 | 68.66 | 1965 |
| HSA-MIR-202-3P | 99.84 | 71.41 | 1290 |
| HSA-MIR-3714 | 99.71 | 70.74 | 2671 |
| HSA-MIR-12123 | 99.52 | 71.79 | 2990 |
| HSA-MIR-20A-3P | 99.44 | 69.10 | 1575 |
| HSA-MIR-5589-3P | 99.29 | 68.30 | 1443 |
| HSA-MIR-5582-5P | 99.27 | 71.42 | 1879 |
| HSA-MIR-3978 | 99.24 | 68.39 | 2201 |
| HSA-MIR-664A-3P | 99.22 | 71.08 | 2696 |
| HSA-MIR-6738-3P | 99.03 | 67.14 | 1326 |
| HSA-MIR-7850-5P | 98.12 | 67.28 | 1111 |
Literature-anchored findings (GeneRIF, showing 3)
- ITIH4 and MTJ1 co-immunoprecipitate from total liver protein extracts and SANT domain of HTJ1 protects the ITIH4(588-930) recombinant fragment (PMID:16271702)
- Our results provide evidence for new loci influencing abdominal visceral (BBS9, ADCY8, KCNK9) and subcutaneous (MLLT10/DNAJC1/EBLN1) fat, and confirmed a locus (THNSL2) previously reported to be associated with abdominal fat in women. (PMID:26480920)
- DNAJC1 facilitates glioblastoma progression by promoting extracellular matrix reorganization and macrophage infiltration. (PMID:38909166)
Cross-species orthologs
8 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | dnajc1 | ENSDARG00000001940 |
| mus_musculus | Dnajc1 | ENSMUSG00000026740 |
| rattus_norvegicus | Dnajc1 | ENSRNOG00000000150 |
| drosophila_melanogaster | CG7556 | FBGN0030990 |
| caenorhabditis_elegans | WBGENE00001020 | |
| caenorhabditis_elegans | WBGENE00001025 | |
| caenorhabditis_elegans | dnj-28 | WBGENE00001046 |
| caenorhabditis_elegans | WBGENE00008122 |
Paralogs (20): DNAJC11 (ENSG00000007923), DNAJC25 (ENSG00000059769), DNAJC10 (ENSG00000077232), DNAJC5 (ENSG00000101152), DNAJC3 (ENSG00000102580), DNAJC17 (ENSG00000104129), DNAJC2 (ENSG00000105821), DNAJC12 (ENSG00000108176), DNAJC4 (ENSG00000110011), DNAJC16 (ENSG00000116138), DNAJC14 (ENSG00000135392), DNAJC13 (ENSG00000138246), DNAJC5B (ENSG00000147570), DNAJC5G (ENSG00000163793), DNAJC7 (ENSG00000168259), DNAJC21 (ENSG00000168724), DNAJC18 (ENSG00000170464), DNAJC24 (ENSG00000170946), DNAJC30 (ENSG00000176410), DNAJC9 (ENSG00000213551)
Protein
Protein identifiers
DnaJ homolog subfamily C member 1 — Q96KC8 (reviewed: Q96KC8)
Alternative names: DnaJ protein homolog MTJ1
All UniProt accessions (2): Q96KC8, Q5T1X2
UniProt curated annotations — full annotation on UniProt →
Function. May modulate protein synthesis.
Subunit / interactions. Interacts (via J domain) with HSPA5. Interacts (via cytosolic domain) with ribosomes. Interacts (via SANT 2 domain) with SERPINA3; the interaction delays the formation of the covalent inhibitory complex SERPINA3-chymotrypsin, but does not alter the catalytic activity of SERPINA3. Interacts (via SANT 2 domain) with ITIH4 (via C-terminus); the interaction protects ITIH4 against in vitro cleavage by kallikrein.
Subcellular location. Endoplasmic reticulum membrane. Nucleus membrane. Microsome membrane.
RefSeq proteins (1): NP_071760* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001005 | SANT/Myb | Domain |
| IPR001623 | DnaJ_domain | Domain |
| IPR009057 | Homeodomain-like_sf | Homologous_superfamily |
| IPR017884 | SANT_dom | Domain |
| IPR018253 | DnaJ_domain_CS | Conserved_site |
| IPR036869 | J_dom_sf | Homologous_superfamily |
| IPR052606 | DnaJ_domain_protein | Family |
Pfam: PF00226, PF23082
UniProt features (30 total): helix 7, modified residue 6, compositionally biased region 5, domain 3, topological domain 2, strand 2, signal peptide 1, chain 1, turn 1, transmembrane region 1, region of interest 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2CQQ | SOLUTION NMR | |
| 2CQR | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96KC8-F1 | 71.45 | 0.30 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (6): 381, 430, 479, 480, 484, 492
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 226 (showing top):
GOBP_NEGATIVE_REGULATION_OF_PROTEOLYSIS, DARWICHE_SKIN_TUMOR_PROMOTER_UP, DARWICHE_PAPILLOMA_RISK_LOW_DN, DARWICHE_PAPILLOMA_RISK_HIGH_UP, DARWICHE_SQUAMOUS_CELL_CARCINOMA_UP, CAGCTG_AP4_Q5, GOBP_TRANSLATION, EVI1_05, GTGCCTT_MIR506, GOBP_POST_TRANSCRIPTIONAL_REGULATION_OF_GENE_EXPRESSION, GOBP_REGULATION_OF_PROTEIN_SECRETION, GOBP_PROTEIN_MATURATION, FOSTER_TOLERANT_MACROPHAGE_DN, SMID_BREAST_CANCER_LUMINAL_B_UP, SCHAEFFER_PROSTATE_DEVELOPMENT_6HR_DN
GO Biological Process (5): regulation of translation (GO:0006417), protein folding (GO:0006457), negative regulation of proteolysis (GO:0045861), regulation of protein secretion (GO:0050708), regulation of protein metabolic process (GO:0051246)
GO Molecular Function (4): ATPase activator activity (GO:0001671), DNA binding (GO:0003677), protein-folding chaperone binding (GO:0051087), protein binding (GO:0005515)
GO Cellular Component (7): endoplasmic reticulum (GO:0005783), endoplasmic reticulum membrane (GO:0005789), plasma membrane (GO:0005886), endomembrane system (GO:0012505), membrane (GO:0016020), nuclear membrane (GO:0031965), nucleus (GO:0005634)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| intracellular membrane-bounded organelle | 2 |
| organelle membrane | 2 |
| cellular anatomical structure | 2 |
| translation | 1 |
| post-transcriptional regulation of gene expression | 1 |
| regulation of protein metabolic process | 1 |
| cellular process | 1 |
| protein maturation | 1 |
| proteolysis | 1 |
| regulation of proteolysis | 1 |
| negative regulation of protein metabolic process | 1 |
| protein secretion | 1 |
| regulation of protein transport | 1 |
| regulation of secretion by cell | 1 |
| protein metabolic process | 1 |
| regulation of macromolecule metabolic process | 1 |
| regulation of primary metabolic process | 1 |
| ATP-dependent activity | 1 |
| molecular function activator activity | 1 |
| nucleic acid binding | 1 |
| protein binding | 1 |
| binding | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| membrane | 1 |
| cell periphery | 1 |
| vacuole | 1 |
| plasma membrane | 1 |
| nucleus | 1 |
| nuclear envelope | 1 |
Protein interactions and networks
STRING
1810 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DNAJC1 | HSPA5 | P11021 | 960 |
| DNAJC1 | CTRB2 | Q6GPI1 | 767 |
| DNAJC1 | CTRB1 | P17538 | 754 |
| DNAJC1 | SERPINA3 | P01011 | 746 |
| DNAJC1 | SEC63 | Q9UGP8 | 656 |
| DNAJC1 | GPR78 | Q96P69 | 559 |
| DNAJC1 | DNAJC12 | Q9UKB3 | 525 |
| DNAJC1 | DNAJB11 | Q9UBS4 | 524 |
| DNAJC1 | DNAJC6 | O75061 | 523 |
| DNAJC1 | HSP90B1 | P14625 | 518 |
| DNAJC1 | DNAJC15 | Q9Y5T4 | 512 |
| DNAJC1 | COMTD1 | Q86VU5 | 510 |
| DNAJC1 | GAK | O14976 | 461 |
| DNAJC1 | DNAJC28 | Q9NX36 | 456 |
| DNAJC1 | DNAJC27 | Q9NZQ0 | 453 |
IntAct
113 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ENTREP1 | WWP2 | psi-mi:“MI:0914”(association) | 0.850 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| SERPINA3 | DNAJC1 | psi-mi:“MI:0915”(physical association) | 0.580 |
| CMTM7 | DNAJC1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ATP6V0C | DNAJC1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TMEM201 | DNAJC1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PLP2 | DNAJC1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYP4F2 | DNAJC1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| AGTRAP | DNAJC1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TNFRSF10C | DNAJC1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DNAJC1 | LAMP2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DNAJC1 | SH3GLB1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DNAJC1 | RMND1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EVA1C | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| GPC3 | CLGN | psi-mi:“MI:0914”(association) | 0.530 |
| HEATR3 | SLC27A2 | psi-mi:“MI:0914”(association) | 0.530 |
| FGG | KDM1A | psi-mi:“MI:0914”(association) | 0.530 |
| EVA1C | STK25 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (452): DNAJC1 (Affinity Capture-MS), DNAJC1 (Affinity Capture-MS), DNAJC1 (Affinity Capture-MS), DNAJC1 (Affinity Capture-MS), DNAJC1 (Affinity Capture-MS), DNAJC1 (Two-hybrid), DNAJC1 (Affinity Capture-MS), DNAJC1 (Co-fractionation), DNAJC1 (Co-fractionation), DNAJC1 (Proximity Label-MS), DNAJC1 (Proximity Label-MS), DNAJC1 (Proximity Label-MS), HSPA5 (Reconstituted Complex), DNAJC1 (Affinity Capture-MS), DNAJC1 (Affinity Capture-MS)
ESM2 similar proteins: A1YVX4, A2ALW5, A3KMI0, A5DTG8, F4JIN3, O13633, O88379, P09758, P34454, P41229, P43613, P70302, P83093, P84903, P92029, Q0WT48, Q13586, Q149L6, Q17433, Q19293, Q28056, Q28I38, Q2QUP1, Q38JA7, Q3UZP0, Q58CP9, Q58E03, Q5BJW9, Q5EA26, Q5HZT9, Q61712, Q6PGC1, Q7XVN7, Q7Z478, Q7ZXQ8, Q8GUN6, Q8IMZ9, Q90830, Q91WT4, Q95KD5
Diamond homologs: A0A0P0VG31, A0LJ41, A1BHL1, A3QGW1, A4IR30, A6ZQH0, A7GT07, A7TGR0, A8F0U0, A8GMF8, A8GR21, A9IGC5, A9KE65, A9NDK6, A9VHU0, B0BWH0, B0UWR3, B1HUD0, B1YKT0, B2RLJ0, B7HCT9, B7HPL2, B7IYG6, B7JN38, B8CXL0, B8FUN3, B9DNJ9, B9E6X0, B9IY80, C1ESK7, C3L5R6, C3P8L9, C3PMM6, C4K111, C5D4U0, O52065, O75953, O89114, P0CW06, P0CW07
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 107 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Signaling by SCF-KIT | 5 | 18.8× | 3e-04 |
| R-HSA-425366 | 5 | 13.7× | 8e-04 |
| Signaling by BRAF and RAF1 fusions | 5 | 12.9× | 8e-04 |
| SLC-mediated transmembrane transport | 7 | 6.3× | 1e-03 |
| Neutrophil degranulation | 10 | 3.5× | 3e-03 |
| Transport of small molecules | 9 | 3.4× | 7e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| ERAD pathway | 6 | 11.4× | 1e-02 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
94 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 73 |
| Likely benign | 6 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3159 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:21766256:CTCA:C | donor_loss | 1.0000 |
| 10:21766257:TCA:T | donor_loss | 1.0000 |
| 10:21766258:CACCT:C | donor_loss | 1.0000 |
| 10:21766260:C:CA | donor_loss | 1.0000 |
| 10:21803903:T:TA | donor_gain | 1.0000 |
| 10:21805979:CAT:C | donor_gain | 1.0000 |
| 10:21806058:T:TA | donor_gain | 1.0000 |
| 10:21806109:A:C | acceptor_gain | 1.0000 |
| 10:21882278:TTAC:T | donor_loss | 1.0000 |
| 10:21882279:TAC:T | donor_loss | 1.0000 |
| 10:21882280:ACC:A | donor_loss | 1.0000 |
| 10:21882440:C:CC | acceptor_gain | 1.0000 |
| 10:21904514:AAACT:A | donor_loss | 1.0000 |
| 10:21904515:AACTC:A | donor_loss | 1.0000 |
| 10:21904516:ACTCA:A | donor_loss | 1.0000 |
| 10:21904517:CTCAC:C | donor_loss | 1.0000 |
| 10:21904518:T:TA | donor_loss | 1.0000 |
| 10:21904519:C:CC | donor_loss | 1.0000 |
| 10:21904520:A:AC | donor_gain | 1.0000 |
| 10:21904520:A:C | donor_loss | 1.0000 |
| 10:21904521:C:CA | donor_gain | 1.0000 |
| 10:21904521:CT:C | donor_gain | 1.0000 |
| 10:21904612:CCT:C | acceptor_gain | 1.0000 |
| 10:21904613:C:CC | acceptor_gain | 1.0000 |
| 10:21904614:T:C | acceptor_gain | 1.0000 |
| 10:21918872:TC:T | acceptor_loss | 1.0000 |
| 10:21918873:C:CA | acceptor_loss | 1.0000 |
| 10:21918873:C:CC | acceptor_gain | 1.0000 |
| 10:21918874:T:C | acceptor_loss | 1.0000 |
| 10:21919826:TCTCA:T | donor_loss | 1.0000 |
AlphaMissense
3593 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:21806019:C:A | W353C | 1.000 |
| 10:21806019:C:G | W353C | 1.000 |
| 10:21806021:A:G | W353R | 1.000 |
| 10:21806021:A:T | W353R | 1.000 |
| 10:21920832:G:T | A168D | 1.000 |
| 10:21920904:C:A | R144M | 1.000 |
| 10:21920927:C:A | W136C | 1.000 |
| 10:21920927:C:G | W136C | 1.000 |
| 10:21920929:A:G | W136R | 1.000 |
| 10:21920929:A:T | W136R | 1.000 |
| 10:21928511:C:A | R122S | 1.000 |
| 10:21928511:C:G | R122S | 1.000 |
| 10:21928530:A:G | L116S | 1.000 |
| 10:21929046:A:C | F106L | 1.000 |
| 10:21929046:A:T | F106L | 1.000 |
| 10:21929047:A:C | F106C | 1.000 |
| 10:21929047:A:G | F106S | 1.000 |
| 10:21929048:A:C | F106V | 1.000 |
| 10:21929048:A:G | F106L | 1.000 |
| 10:21929076:C:A | K96N | 1.000 |
| 10:21929076:C:G | K96N | 1.000 |
| 10:21929083:G:T | P94Q | 1.000 |
| 10:21929085:A:C | H93Q | 1.000 |
| 10:21929085:A:T | H93Q | 1.000 |
| 10:21929086:T:C | H93R | 1.000 |
| 10:21929087:G:C | H93D | 1.000 |
| 10:21929087:G:T | H93N | 1.000 |
| 10:21929095:A:G | L90P | 1.000 |
| 10:21929107:C:G | R86P | 1.000 |
| 10:21929108:G:T | R86S | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000010805 (10:21792706 C>T), RS1000015426 (10:21922308 A>T), RS1000017117 (10:21959455 G>A), RS1000038054 (10:21850271 G>A), RS1000046349 (10:21922085 T>G), RS1000063172 (10:21792425 T>C), RS1000069612 (10:21959291 ATT>A,AT,ATTT), RS1000100379 (10:21837086 T>C,G), RS1000104070 (10:21891696 T>C), RS1000110212 (10:21777341 AG>A), RS1000114077 (10:21820831 A>G), RS1000122992 (10:21896989 C>T), RS1000131014 (10:21923687 T>C), RS1000162810 (10:21940887 C>A), RS1000177903 (10:21934427 A>C)
Disease associations
OMIM: gene MIM:611207 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
23 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001937_11 | Breast cancer | 4.000000e-14 |
| GCST001937_63 | Breast cancer | 9.000000e-16 |
| GCST001941_14 | Ovarian cancer | 2.000000e-08 |
| GCST001941_15 | Ovarian cancer | 1.000000e-07 |
| GCST003170_6 | Subcutaneous adipose tissue | 1.000000e-08 |
| GCST004988_224 | Breast cancer | 2.000000e-19 |
| GCST004988_273 | Breast cancer | 6.000000e-18 |
| GCST007507_11 | Benign prostatic hyperplasia and lower urinary tract symptoms | 1.000000e-22 |
| GCST008790_37 | Urinary albumin-to-creatinine ratio | 4.000000e-08 |
| GCST008794_54 | Urinary albumin-to-creatinine ratio | 2.000000e-08 |
| GCST010135_27 | Oily fish consumption | 2.000000e-19 |
| GCST010136_13 | Fruit consumption | 1.000000e-08 |
| GCST010136_20 | Fruit consumption | 3.000000e-08 |
| GCST010136_26 | Fruit consumption | 5.000000e-20 |
| GCST010138_13 | Raw vegetable consumption | 2.000000e-11 |
| GCST010140_44 | Pork consumption | 2.000000e-19 |
| GCST010142_54 | Fish- and plant-related diet | 8.000000e-17 |
| GCST010142_65 | Fish- and plant-related diet | 5.000000e-11 |
| GCST010142_85 | Fish- and plant-related diet | 2.000000e-24 |
| GCST010703_303 | Brain morphology (MOSTest) | 1.000000e-27 |
| GCST010774_18 | Essential hypertension (time to event) | 1.000000e-08 |
| GCST010797_11 | Breast cancer, ovarian cancer or prostate cancer (pleiotropy) | 3.000000e-10 |
| GCST011351_16 | Aspartate aminotransferase levels | 2.000000e-09 |
EFO canonical traits (6, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008008 | lower urinary tract symptom |
| EFO:0007778 | urinary albumin to creatinine ratio |
| EFO:0008111 | diet measurement |
| EFO:0004346 | neuroimaging measurement |
| EFO:0004918 | age at diagnosis |
| EFO:0004736 | aspartate aminotransferase measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
46 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases methylation, affects cotreatment, increases expression, affects expression | 9 |
| Cyclosporine | affects expression, increases expression, affects cotreatment | 5 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| bisphenol A | affects expression, increases methylation | 2 |
| sodium arsenite | decreases expression, increases expression | 2 |
| (+)-JQ1 compound | increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tretinoin | decreases expression, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| dicrotophos | decreases expression | 1 |
| bis(tri-n-butyltin)oxide | increases expression | 1 |
| deoxynivalenol | increases expression | 1 |
| geraniol | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| nickel sulfate | decreases expression | 1 |
| coumarin | decreases phosphorylation | 1 |
| nefazodone | affects cotreatment, increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | increases expression, affects cotreatment | 1 |
| Acetaminophen | increases expression | 1 |
| Arsenates | affects cotreatment, increases expression | 1 |
| Atrazine | affects cotreatment, increases expression | 1 |
| Benzo(a)pyrene | decreases expression | 1 |
| Chenodeoxycholic Acid | affects cotreatment, increases expression | 1 |
| Cholic Acids | affects cotreatment, affects expression | 1 |
| Cisplatin | increases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): benign prostatic hyperplasia, essential hypertension, ovarian carcinoma