DNAJC13
gene geneOn this page
Also known as RME8KIAA0678
Summary
DNAJC13 (DnaJ heat shock protein family (Hsp40) member C13, HGNC:30343) is a protein-coding gene on chromosome 3q22.1, encoding DnaJ homolog subfamily C member 13 (O75165). Involved in membrane trafficking through early endosomes, such as the early endosome to recycling endosome transport implicated in the recycling of transferrin and the early endosome to late endosome transport implicated in degradation of EGF and EGFR. It is a selective cancer dependency (DepMap: 13.0% of cell lines).
This gene encodes a member of the Dnaj protein family whose members act as co-chaperones of a partner heat-shock protein by binding to the latter and stimulating ATP hydrolysis. The encoded protein associates with the heat-shock protein Hsc70 and plays a role in clathrin-mediated endocytosis. It may also be involved in post-endocytic transport mechanisms via its associations with other proteins, including the sorting nexin SNX1. Mutations in this gene are associated with Parkinson’s disease.
Source: NCBI Gene 23317 — RefSeq curated summary.
At a glance
- Gene–disease (curated): hereditary late onset Parkinson disease (Supportive, GenCC)
- GWAS associations: 31 (top 4% of genes corpus-wide)
- Clinical variants (ClinVar): 496 total (top 7% of genes corpus-wide)
- Regional missense constraint (gnomAD): 1 of 3 regions constrained (≈1% of expected missense variation)
- GTEx eGene: eQTL in 36 tissues, sQTL in 0 (q < 0.05)
- Phenotypes (HPO): 34
- Cancer dependency (DepMap): dependent in 13.0% of screened cell lines
- Constraint (gnomAD): pLI 1.00 (loss-of-function intolerant), LOEUF 0.27 (highly constrained)
- MANE Select transcript:
NM_015268 - Notable: 496 clinical variants but no curated precision-oncology (CIViC) evidence yet
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30343 |
| Approved symbol | DNAJC13 |
| Name | DnaJ heat shock protein family (Hsp40) member C13 |
| Location | 3q22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | RME8, KIAA0678 |
| Ensembl gene | ENSG00000138246 |
| Ensembl biotype | protein_coding |
| OMIM | 614334 |
| Entrez | 23317 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 4 nonsense_mediated_decay, 3 protein_coding, 3 retained_intron, 2 protein_coding_CDS_not_defined
MANE Select: ENST00000260818
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 2, TSL 2: 2, TSL 5: 4
ENST00000260818, ENST00000463038, ENST00000464766, ENST00000471925, ENST00000486798, ENST00000506813, ENST00000509279, ENST00000513822, ENST00000650455, ENST00001079863, ENST00001109461, ENST00001143923
RefSeq mRNA: 2 — MANE Select: NM_015268
NM_001329126, NM_015268
CCDS: CCDS33857
Canonical transcript exons
ENST00000260818 — 56 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000933898 | 132496528 | 132496663 |
| ENSE00000933899 | 132499126 | 132499310 |
| ENSE00000933900 | 132499734 | 132499808 |
| ENSE00000933901 | 132500794 | 132500913 |
| ENSE00000933902 | 132502289 | 132502468 |
| ENSE00000933903 | 132503214 | 132503381 |
| ENSE00000933904 | 132505302 | 132505415 |
| ENSE00000933905 | 132507237 | 132507353 |
| ENSE00000933908 | 132516422 | 132516496 |
| ENSE00000933909 | 132516704 | 132516816 |
| ENSE00000933910 | 132522828 | 132522997 |
| ENSE00000933912 | 132523540 | 132523713 |
| ENSE00000933913 | 132525610 | 132525789 |
| ENSE00000933914 | 132526141 | 132526281 |
| ENSE00000933915 | 132528189 | 132528332 |
| ENSE00000933916 | 132530998 | 132531097 |
| ENSE00001078094 | 132514571 | 132514670 |
| ENSE00001078099 | 132538176 | 132539032 |
| ENSE00001078100 | 132511067 | 132511244 |
| ENSE00001078101 | 132490897 | 132491051 |
| ENSE00001372117 | 132488976 | 132489021 |
| ENSE00001376225 | 132473145 | 132473227 |
| ENSE00001379471 | 132483375 | 132483577 |
| ENSE00001388031 | 132488298 | 132488452 |
| ENSE00001390898 | 132482226 | 132482330 |
| ENSE00001391379 | 132467170 | 132467313 |
| ENSE00001514394 | 132417502 | 132417760 |
| ENSE00002325288 | 132494144 | 132494259 |
| ENSE00002362931 | 132492414 | 132492615 |
| ENSE00002378319 | 132495088 | 132495166 |
| ENSE00003466493 | 132453599 | 132453694 |
| ENSE00003472549 | 132465995 | 132466070 |
| ENSE00003479535 | 132480369 | 132480470 |
| ENSE00003481357 | 132484588 | 132484672 |
| ENSE00003489655 | 132477981 | 132478140 |
| ENSE00003498192 | 132462467 | 132462523 |
| ENSE00003500582 | 132466299 | 132466394 |
| ENSE00003507842 | 132447898 | 132447939 |
| ENSE00003509717 | 132461050 | 132461205 |
| ENSE00003512376 | 132460250 | 132460357 |
| ENSE00003524228 | 132474932 | 132475085 |
| ENSE00003527082 | 132463696 | 132463817 |
| ENSE00003529575 | 132513008 | 132513099 |
| ENSE00003540048 | 132453298 | 132453504 |
| ENSE00003554680 | 132454066 | 132454157 |
| ENSE00003555934 | 132457269 | 132457368 |
| ENSE00003560350 | 132450647 | 132450847 |
| ENSE00003576768 | 132479227 | 132479289 |
| ENSE00003598644 | 132456501 | 132456580 |
| ENSE00003600583 | 132456663 | 132456832 |
| ENSE00003608910 | 132523157 | 132523199 |
| ENSE00003613837 | 132434538 | 132434618 |
| ENSE00003639439 | 132456235 | 132456401 |
| ENSE00003652338 | 132447321 | 132447470 |
| ENSE00003653196 | 132477789 | 132477892 |
| ENSE00003664252 | 132446475 | 132446550 |
Expression profiles
Bgee: expression breadth ubiquitous, 297 present calls, max score 93.98.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 22.7933 / max 391.4940, expressed in 1789 samples.
Highest expression (Bgee): calcaneal tendon, buccal mucosa cell, saphenous vein, trabecular bone tissue, superficial temporal artery.
Genetic regulation across tissues (GTEx eQTL / sQTL)
DNAJC13 is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 36 tissues and its splicing (sQTL) in 0 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 36 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Skin Sun Exposed Lower leg | eqtl | 4.5e-45 | +0.82 | 3:132469319:A:G |
| Skin Not Sun Exposed Suprapubic | eqtl | 2.5e-41 | +0.89 | 3:132469319:A:G |
| Thyroid | eqtl | 3.0e-33 | +0.92 | 3:132469319:A:G |
| Adipose Subcutaneous | eqtl | 4.5e-24 | +0.56 | 3:132469319:A:G |
| Pancreas | eqtl | 2.7e-20 | +0.92 | 3:132469319:A:G |
| Breast Mammary Tissue | eqtl | 1.5e-18 | +0.47 | 3:132498859:G:A |
| Nerve Tibial | eqtl | 4.2e-18 | +0.67 | 3:132498859:G:A |
| Esophagus Mucosa | eqtl | 1.1e-17 | +0.42 | 3:132569653:C:A |
| Testis | eqtl | 2.2e-15 | -0.20 | 3:132515073:G:T |
| Lung | eqtl | 4.8e-15 | +0.52 | 3:132469319:A:G |
| Spleen | eqtl | 1.7e-14 | +1.04 | 3:132569653:C:A |
| Adipose Visceral Omentum | eqtl | 3.7e-13 | +0.45 | 3:132569653:C:A |
| Colon Transverse | eqtl | 3.1e-12 | +0.42 | 3:132462976:G:T |
| Cells Cultured fibroblasts | eqtl | 2.1e-11 | +0.35 | 3:132498859:G:A |
| Stomach | eqtl | 1.2e-10 | +0.46 | 3:132498859:G:A |
| Muscle Skeletal | eqtl | 5.1e-10 | +0.14 | 3:132417187:ACGCCGGAGGGGCGTGGTCATGGGCACC:A |
| Heart Atrial Appendage | eqtl | 3.9e-09 | +0.38 | 3:132469319:A:G |
| Esophagus Muscularis | eqtl | 5.2e-09 | -0.14 | 3:132550917:A:G |
| Small Intestine Terminal Ileum | eqtl | 6.2e-08 | +0.78 | 3:132498859:G:A |
| Adrenal Gland | eqtl | 1.6e-07 | +0.25 | 3:132417187:ACGCCGGAGGGGCGTGGTCATGGGCACC:A |
FANTOM5 promoters
3 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 38627 | 20.1599 | 1786 |
| 38629 | 1.9301 | 400 |
| 38630 | 0.7033 | 132 |
Top tissues by expression
showing 100 of 299 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| calcaneal tendon | UBERON:0003701 | 93.98 | gold quality |
| buccal mucosa cell | CL:0002336 | 93.50 | gold quality |
| saphenous vein | UBERON:0007318 | 93.19 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 93.12 | gold quality |
| superficial temporal artery | UBERON:0001614 | 92.91 | gold quality |
| parietal pleura | UBERON:0002400 | 92.62 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 92.50 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 92.48 | gold quality |
| cauda epididymis | UBERON:0004360 | 92.29 | gold quality |
| pleura | UBERON:0000977 | 92.17 | gold quality |
| tibia | UBERON:0000979 | 92.11 | gold quality |
| adrenal tissue | UBERON:0018303 | 92.06 | gold quality |
| visceral pleura | UBERON:0002401 | 91.83 | gold quality |
| stromal cell of endometrium | CL:0002255 | 91.78 | gold quality |
| endometrium | UBERON:0001295 | 91.69 | gold quality |
| colonic epithelium | UBERON:0000397 | 91.54 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 91.50 | gold quality |
| bone marrow cell | CL:0002092 | 91.36 | gold quality |
| jejunal mucosa | UBERON:0000399 | 91.26 | gold quality |
| corpus epididymis | UBERON:0004359 | 91.22 | gold quality |
| monocyte | CL:0000576 | 91.19 | gold quality |
| jejunum | UBERON:0002115 | 91.19 | gold quality |
| mononuclear cell | CL:0000842 | 91.16 | gold quality |
| leukocyte | CL:0000738 | 90.97 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 90.84 | gold quality |
| seminal vesicle | UBERON:0000998 | 90.70 | gold quality |
| myometrium | UBERON:0001296 | 90.67 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 90.64 | gold quality |
| urethra | UBERON:0000057 | 90.63 | gold quality |
| pericardium | UBERON:0002407 | 90.61 | gold quality |
| uterus | UBERON:0000995 | 90.52 | gold quality |
| blood vessel layer | UBERON:0004797 | 90.52 | gold quality |
| oviduct epithelium | UBERON:0004804 | 90.51 | gold quality |
| bone marrow | UBERON:0002371 | 90.50 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 90.38 | gold quality |
| decidua | UBERON:0002450 | 90.32 | gold quality |
| synovial joint | UBERON:0002217 | 90.21 | gold quality |
| amniotic fluid | UBERON:0000173 | 90.15 | gold quality |
| corpus callosum | UBERON:0002336 | 89.93 | gold quality |
| secondary oocyte | CL:0000655 | 89.89 | gold quality |
| caput epididymis | UBERON:0004358 | 89.89 | gold quality |
| oral cavity | UBERON:0000167 | 89.80 | gold quality |
| eye | UBERON:0000970 | 89.79 | gold quality |
| tendon | UBERON:0000043 | 89.78 | gold quality |
| urinary bladder | UBERON:0001255 | 89.49 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 89.38 | gold quality |
| cardia of stomach | UBERON:0001162 | 89.38 | gold quality |
| nephron tubule | UBERON:0001231 | 89.37 | gold quality |
| female reproductive system | UBERON:0000474 | 89.12 | gold quality |
| aorta | UBERON:0000947 | 89.04 | gold quality |
| popliteal artery | UBERON:0002250 | 89.04 | gold quality |
| tibial artery | UBERON:0007610 | 89.04 | gold quality |
| ascending aorta | UBERON:0001496 | 88.99 | gold quality |
| thoracic aorta | UBERON:0001515 | 88.99 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 88.99 | gold quality |
| artery | UBERON:0001637 | 88.95 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 88.95 | gold quality |
| right coronary artery | UBERON:0001625 | 88.87 | gold quality |
| renal glomerulus | UBERON:0000074 | 88.86 | gold quality |
| body of uterus | UBERON:0009853 | 88.66 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 88.62 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 88.60 | gold quality |
| uterine cervix | UBERON:0000002 | 88.57 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 88.53 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 88.51 | gold quality |
| mammary duct | UBERON:0001765 | 88.37 | gold quality |
| skin of hip | UBERON:0001554 | 88.35 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 88.29 | gold quality |
| superior surface of tongue | UBERON:0007371 | 88.28 | gold quality |
| metanephros | UBERON:0000081 | 88.27 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 88.26 | gold quality |
| large intestine | UBERON:0000059 | 88.25 | gold quality |
| kidney epithelium | UBERON:0004819 | 88.25 | gold quality |
| vagina | UBERON:0000996 | 88.19 | gold quality |
| colon | UBERON:0001155 | 88.16 | gold quality |
| sigmoid colon | UBERON:0001159 | 88.11 | gold quality |
| rectum | UBERON:0001052 | 88.10 | gold quality |
| coronary artery | UBERON:0001621 | 88.10 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 88.10 | gold quality |
| placenta | UBERON:0001987 | 88.08 | gold quality |
| penis | UBERON:0000989 | 88.05 | gold quality |
| tibial nerve | UBERON:0001323 | 88.05 | gold quality |
| left coronary artery | UBERON:0001626 | 88.05 | gold quality |
| fallopian tube | UBERON:0003889 | 88.05 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 88.02 | gold quality |
| renal medulla | UBERON:0000362 | 88.01 | gold quality |
| transverse colon | UBERON:0001157 | 88.00 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 87.97 | gold quality |
| cortical plate | UBERON:0005343 | 87.97 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 87.97 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 87.96 | gold quality |
| lower esophagus | UBERON:0013473 | 87.96 | gold quality |
| mammary gland | UBERON:0001911 | 87.95 | gold quality |
| cortex of kidney | UBERON:0001225 | 87.94 | gold quality |
| hair follicle | UBERON:0002073 | 87.82 | gold quality |
| connective tissue | UBERON:0002384 | 87.80 | gold quality |
| intestine | UBERON:0000160 | 87.74 | gold quality |
| adipose tissue | UBERON:0001013 | 87.69 | gold quality |
| oocyte | CL:0000023 | 87.66 | gold quality |
| endocervix | UBERON:0000458 | 87.66 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.53 |
HPA expression
RNA tissue specificity: Low tissue specificity
showing 60 of 80 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM | Protein (IHC) |
|---|---|---|---|
| Caudate putamen | tissue | 25.7 | |
| Frontal cortex | tissue | 24.3 | |
| Midbrain | tissue | 21.7 | |
| Pons | tissue | 20.9 | |
| Corpus callosum | tissue | 20.3 | |
| Choroid plexus | tissue | 20.1 | |
| Spinal cord | tissue | 20.1 | |
| Substantia nigra | tissue | 19.9 | |
| Thalamus | tissue | 19.8 | |
| Superior colliculi | tissue | 19.7 | |
| Medulla oblongata | tissue | 19.1 | |
| Locus coeruleus | tissue | 17.9 | |
| Cerebellum | tissue | 17.7 | high |
| Cerebral cortex | tissue | 17.2 | medium |
| Hypothalamus | tissue | 17.2 | |
| Somatosensory cortex | tissue | 17.2 | |
| Putamen | tissue | 17.1 | |
| Hippocampal formation | tissue | 16.8 | |
| Septum | tissue | 16.6 | |
| Entorhinal cortex | tissue | 16.4 | |
| Periaqueductal gray | tissue | 16.4 | |
| Olfactory bulb | tissue | 16.4 | |
| Occipital cortex | tissue | 16.4 | |
| Motor cortex | tissue | 16.2 | |
| Retrosplenial and cingulate cortex | tissue | 16.2 | |
| Temporal cortex | tissue | 16.1 | |
| Amygdala | tissue | 15.8 | |
| Retrosplenial cortex | tissue | 15.8 | |
| Smooth muscle | tissue | 15.6 | low |
| Ventral forebrain | tissue | 15.5 | |
| Prefrontal cortex | tissue | 15.4 | |
| Insular cortex | tissue | 15.4 | |
| Kidney | tissue | 14.9 | high |
| Thyroid gland | tissue | 14.7 | medium |
| Bone marrow | tissue | 14.7 | high |
| Placenta | tissue | 14.5 | medium |
| Hippocampus | tissue | 14.4 | medium |
| Nucleus accumbens | tissue | 14.3 | |
| Postcentral gyrus | tissue | 14.0 | |
| Basal ganglia | tissue | 13.6 | medium |
| Rectum | tissue | 13.4 | high |
| Tongue | tissue | 13.3 | |
| Colon | tissue | 12.6 | high |
| Endometrium 1 | tissue | 12.3 | medium |
| Cervix | tissue | 12.1 | medium |
| Heart muscle | tissue | 12.1 | high |
| Parathyroid gland | tissue | 11.8 | medium |
| Appendix | tissue | 11.7 | high |
| Spleen | tissue | 11.5 | medium |
| Seminal vesicle | tissue | 11.4 | high |
| Urinary bladder | tissue | 11.2 | medium |
| Thymus | tissue | 11.2 | |
| Epididymis | tissue | 11.0 | high |
| Ovary | tissue | 10.9 | high |
| Breast | tissue | 10.7 | medium |
| Skeletal muscle | tissue | 10.6 | high |
| Lung | tissue | 10.6 | medium |
| Adipose tissue | tissue | 10.5 | medium |
| Lymph node | tissue | 10.3 | high |
| Duodenum | tissue | 10.2 | high |
Brain sub-regions (HPA Brain Atlas): detected in 192; highest nTPM — White matter (20.3), Dorsal spinal cord (20.1), Ventral spinal cord (20.0), Nucleus raphe pallidus (19.4), Anterior thalamic nucleus, ventral (19.1).
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
Targeting DNAJC13 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
showing 30 of 93 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-MIR-3605-5P | 99.96 | 67.12 | 932 |
| HSA-MIR-557 | 99.96 | 70.01 | 1640 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
| HSA-MIR-141-3P | 99.94 | 72.79 | 2421 |
Functional genomics
gnomAD constraint: pLI 1, LOEUF 0.267, missense Z 3.39 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD)
ENST00000260818 splits into 3 regions with different missense tolerance; 1 is missense-constrained (≈1% of the expected missense variation). Missense variants in a constrained region (low observed/expected) are more likely to be pathogenic. gnomAD
| Region (GRCh38) | Missense obs / exp | o/e | Constrained |
|---|---|---|---|
| 3:132,434,551–132,475,075 | 762 / 964.1 | 0.79 | no |
| 3:132,475,076–132,477,823 | 4 / 16.7 | 0.24 | yes (p 1.9e-03) |
| 3:132,477,824–132,538,279 | 1494 / 1693.7 | 0.88 | no |
| DepMap (CRISPR cell-line fitness): dependent in 13.0% of screened cell lines. |
Most-dependent cell lines (DepMap gene-effect, lower = stronger; ≤ −0.5 shown): Hs 936.T (-1.946), IGR-1 (-1.783), MM473 (-1.73), ONE58 (-1.635), COLO 792 (-1.478), C-4 I (-1.464), NCI-H661 (-1.435), Hep G2 (-1.382), UM-HACC-2A (-1.349), HuH-6 (-1.313), NCI-H2052 (-1.303), HKA-1 (-1.271), WM88 (-1.236), UPCI-SCC-074 (-1.2), LNZ308 (-1.194).
Literature-anchored findings (GeneRIF, showing 18)
- RME-8 functions in intracellular trafficking and provides the first evidence of a functional role for a DnaJ domain-bearing co-chaperone on endosomes (PMID:16179350)
- hRME is primarily involved in membrane trafficking through early endosomes, but not through degradative organelles, such as multivesicular bodies and late endosomes. (PMID:18256511)
- These data implicate RME-8 in sorting decisions influencing EGFR at the level of endosomes and point to RME-8 as a potential regulatory target in ErbB2-positive breast cancers. (PMID:18307993)
- Found DNAJC13 A2057S variant is probably a rare cause of Tourette syndrome/chronic tic phenotype in Chinese Han patients. (PMID:22507240)
- Missense mutations in DNAJC13 does not play a major role in PD in the Chinese population. (PMID:24126164)
- a pathogenic mutation in DNAJC13, a component of the endosomal recycling system, helps to emphasize the role of endosomal recycling rather than endolysosomal protein degradation in the biology of late-onset Parkinson disease. (PMID:24218364)
- Data propose that the interaction between RME-8 and the WASH complex provides a means to coordinate the activity of the WASH complex with the membrane-tubulating function of the sorting. (PMID:24643499)
- DNAJC13 c.2564A>G (p.(N855S)) was identified in two patients with essential tremor. (PMID:25118025)
- PD associated with a DNAJC13 p.N855S parkinsonism mutation presents as late-onset, often slowly progressive, usually dopamine-responsive typical Parkinsonism. (PMID:25186792)
- Although the contribution of rare genetic variation in DNAJC13 to parkinsonisms remains to be further elucidated, this study suggests that, in addition to p.N855S, other rare variants might affect disease susceptibility (PMID:25393719)
- Re-expression of miR-193b in breast cancer cell lines decreased DNAJC13 (HPS40) and RAB22A expression, providing a mechanism by which mir193-b acts as a tumor suppressor. (PMID:25550792)
- These results further highlight the critical role for phosphatidylinositol 3-phosphate in the RME-8-mediated organizational control of various endosomal activities, including retrograde transport. (PMID:26134565)
- Mutations in exon 24 of DNAJC13 are not a common cause of Parkinson or Lewy body disease among Caucasian populations. (PMID:26278106)
- There is a possibility that specific DNAJC13 variants may play a minor role in PD susceptibility. (PMID:27236598)
- Parkinson’s disease-linked DNAJC13 mutation perturbs multi-directional endosomal trafficking, resulting in the aberrant endosomal retention of alpha-synuclein, which might predispose to the neurodegenerative process that leads to Parkinson’s disease. (PMID:29309590)
- This study showed the DNAJC13 mutation screening in patients with Parkinson’s disease. (PMID:29887357)
- Receptor-mediated endocytosis 8 (RME-8)/DNAJC13 is a novel positive modulator of autophagy and stabilizes cellular protein homeostasis. (PMID:32322926)
- Association study of DNAJC13, UCHL1, HTRA2, GIGYF2, and EIF4G1 with Parkinson’s disease. (PMID:33239198)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Dnajc13 | ENSMUSG00000032560 |
| rattus_norvegicus | Dnajc13 | ENSRNOG00000011491 |
| drosophila_melanogaster | Rme-8 | FBGN0015477 |
| caenorhabditis_elegans | rme-8 | WBGENE00004378 |
Paralogs (20): DNAJC11 (ENSG00000007923), DNAJC25 (ENSG00000059769), DNAJC10 (ENSG00000077232), DNAJC5 (ENSG00000101152), DNAJC3 (ENSG00000102580), DNAJC17 (ENSG00000104129), DNAJC2 (ENSG00000105821), DNAJC12 (ENSG00000108176), DNAJC4 (ENSG00000110011), DNAJC16 (ENSG00000116138), DNAJC14 (ENSG00000135392), DNAJC1 (ENSG00000136770), DNAJC5B (ENSG00000147570), DNAJC5G (ENSG00000163793), DNAJC7 (ENSG00000168259), DNAJC21 (ENSG00000168724), DNAJC18 (ENSG00000170464), DNAJC24 (ENSG00000170946), DNAJC30 (ENSG00000176410), DNAJC9 (ENSG00000213551)
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:2676368) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 7 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| abnormal digit morphology | 1 |
| decreased mean corpuscular volume | 1 |
| decreased heart rate | 1 |
| increased circulating bilirubin level | 1 |
| decreased mean corpuscular hemoglobin | 1 |
| embryonic lethality between implantation and somite formation, complete penetrance | 1 |
| preweaning lethality, complete penetrance | 1 |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| ACP3 | protein-coding | 55 |
| TMEM108-AS1 | ncRNA | 101927455 |
| NPHP3 | protein-coding | 27031 |
| NPHP3-AS1 | ncRNA | 348808 |
| ACKR4 | protein-coding | 51554 |
| TMEM108 | protein-coding | 66000 |
| UBA5 | protein-coding | 79876 |
| ACAD11 | protein-coding | 84129 |
| NPHP3-ACAD11 | ncRNA | 100532724 |
Protein
Protein identifiers
DnaJ homolog subfamily C member 13 — O75165 (reviewed: O75165)
Alternative names: Required for receptor-mediated endocytosis 8
All UniProt accessions (4): A0A3B3IRM0, H0Y8Q2, H0YA63, O75165
UniProt curated annotations — full annotation on UniProt →
Function. Involved in membrane trafficking through early endosomes, such as the early endosome to recycling endosome transport implicated in the recycling of transferrin and the early endosome to late endosome transport implicated in degradation of EGF and EGFR. Involved in the regulation of endosomal membrane tubulation and regulates the dynamics of SNX1 on the endosomal membrane; via association with WASHC2 may link the WASH complex to the retromer SNX-BAR subcomplex.
Subunit / interactions. Interacts with WASHC2C; mediates the association with the WASH complex.
Subcellular location. Early endosome. Early endosome membrane. Endosome membrane.
Disease relevance. Parkinson disease (PARK) [MIM:168600] A complex neurodegenerative disorder characterized by bradykinesia, resting tremor, muscular rigidity and postural instability. Additional features are characteristic postural abnormalities, dysautonomia, dystonic cramps, and dementia. The pathology of Parkinson disease involves the loss of dopaminergic neurons in the substantia nigra and the presence of Lewy bodies (intraneuronal accumulations of aggregated proteins), in surviving neurons in various areas of the brain. The disease is progressive and usually manifests after the age of 50 years, although early-onset cases (before 50 years) are known. The majority of the cases are sporadic suggesting a multifactorial etiology based on environmental and genetic factors. However, some patients present with a positive family history for the disease. Familial forms of the disease usually begin at earlier ages and are associated with atypical clinical features. The gene represented in this entry may be involved in disease pathogenesis. Genetic variants in DNAJC13 and TMEM230 have been found in the same large multigenerational family with adult-onset Parkinson disease. The pathological role of each gene and therefore the exact molecular basis of the disease is unclear.
RefSeq proteins (2): NP_001316055, NP_056083* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001623 | DnaJ_domain | Domain |
| IPR011989 | ARM-like | Homologous_superfamily |
| IPR016024 | ARM-type_fold | Homologous_superfamily |
| IPR025640 | GYF_2 | Domain |
| IPR035445 | GYF-like_dom_sf | Homologous_superfamily |
| IPR036869 | J_dom_sf | Homologous_superfamily |
| IPR044978 | GRV2/DNAJC13 | Family |
| IPR045802 | GRV2/DNAJC13_N | Domain |
Pfam: PF00226, PF14237, PF19432
UniProt features (34 total): sequence variant 21, sequence conflict 9, chain 1, domain 1, region of interest 1, modified residue 1
Structure
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O75165-F1 | 82.91 | 0.35 |
Human Protein Atlas
Protein class: Predicted membrane proteins, Disease related genes, Human disease related genes
Protein evidence: Evidence at protein level
Subcellular location (HPA, imaging): vesicles; cytosol
Antibody reliability (HPA): IH approved · IF supported
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1)
| Type | Positions |
|---|---|
| N6-acetyllysine | 84 |
Function
Pathways and Gene Ontology
Reactome pathways
1 curated (TAS) of 3; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
3 pathways:
| ID | Pathway | Evidence |
|---|---|---|
| R-HSA-6798695 | Neutrophil degranulation | curated |
| R-HSA-168256 | Immune System | — |
| R-HSA-168249 | Innate Immune System | — |
MSigDB gene sets: 265 (showing top):
RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_ENDOSOME_ORGANIZATION, GOCC_VACUOLAR_MEMBRANE, PAL_PRMT5_TARGETS_UP, GOCC_SECRETORY_GRANULE, GOBP_VESICLE_ORGANIZATION, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GOBP_OSTEOBLAST_DIFFERENTIATION, GOBP_VESICLE_MEDIATED_TRANSPORT, GOBP_REGULATION_OF_VESICLE_MEDIATED_TRANSPORT, ONKEN_UVEAL_MELANOMA_UP, GOBP_REGULATION_OF_CELLULAR_LOCALIZATION, GOBP_REGULATION_OF_EARLY_ENDOSOME_TO_LATE_ENDOSOME_TRANSPORT, MODULE_206
GO Biological Process (5): osteoblast differentiation (GO:0001649), receptor-mediated endocytosis (GO:0006898), endosome organization (GO:0007032), protein transport (GO:0015031), regulation of early endosome to late endosome transport (GO:2000641)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (10): lysosomal membrane (GO:0005765), plasma membrane (GO:0005886), endosome membrane (GO:0010008), membrane (GO:0016020), secretory granule membrane (GO:0030667), early endosome membrane (GO:0031901), azurophil granule membrane (GO:0035577), extracellular exosome (GO:0070062), early endosome (GO:0005769), WASH complex (GO:0071203)
Reactome top-level categories
2 top-level categories:
| Category | Pathways |
|---|---|
| Innate Immune System | 1 |
| Immune System | 1 |
GO top-level categories
30 GO namespaces:
| Category | Terms |
|---|---|
| endosome | 2 |
| cytoplasmic vesicle membrane | 2 |
| bounding membrane of organelle | 2 |
| ossification | 1 |
| cell differentiation | 1 |
| endocytosis | 1 |
| vesicle-mediated transport | 1 |
| endomembrane system organization | 1 |
| vesicle organization | 1 |
| transport | 1 |
| intracellular protein localization | 1 |
| establishment of protein localization | 1 |
| regulation of intracellular transport | 1 |
| early endosome to late endosome transport | 1 |
| regulation of vesicle-mediated transport | 1 |
| binding | 1 |
| lysosome | 1 |
| lytic vacuole membrane | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
| secretory granule | 1 |
| early endosome | 1 |
| endosome membrane | 1 |
| lysosomal membrane | 1 |
| secretory granule membrane | 1 |
| azurophil granule | 1 |
| extracellular vesicle | 1 |
| cytoplasm | 1 |
| protein-containing complex | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 8 of 17 annotations. The rest are phylogenetic / computational / electronic (IEA).
8 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| endosome organization | BP | mutant phenotype |
| osteoblast differentiation | BP | high-throughput assay |
| regulation of early endosome to late endosome transport | BP | mutant phenotype |
| early endosome membrane | CC | direct assay |
| endosome membrane | CC | direct assay |
| extracellular exosome | CC | high-throughput assay |
| lysosomal membrane | CC | high-throughput assay |
| membrane | CC | high-throughput assay |
Protein interactions and networks
STRING
showing 15 of 1,226 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DNAJC13 | VPS35 | Q96QK1 | 832 |
| DNAJC13 | DNAJC6 | O75061 | 815 |
| DNAJC13 | TMEM230 | Q96A57 | 752 |
| DNAJC13 | SYNJ1 | O43426 | 729 |
| DNAJC13 | ATP13A2 | Q9NQ11 | 706 |
| DNAJC13 | VPS13C | Q709C8 | 697 |
| DNAJC13 | PLA2G6 | O60733 | 695 |
| DNAJC13 | CHCHD2 | Q9Y6H1 | 695 |
| DNAJC13 | EIF4G1 | Q04637 | 691 |
| DNAJC13 | PINK1 | Q9BXM7 | 683 |
| DNAJC13 | PRKN | O60260 | 675 |
| DNAJC13 | GBA1 | P04062 | 673 |
| DNAJC13 | DNAJB2 | P25686 | 666 |
| DNAJC13 | RIC3 | Q7Z5B4 | 665 |
| DNAJC13 | FBXO7 | Q9Y3I1 | 665 |
IntAct
Human interaction partners of DNAJC13 in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
showing 30 of 31 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| TMEM9B | association | 0.640 | 1 |
| SCAMP1 | physical association | 0.620 | 2 |
| OCLN | association | 0.530 | 3 |
| BAG4 | association | 0.530 | 2 |
| HSPA9 | association | 0.530 | 2 |
| STUB1 | association | 0.530 | 2 |
| HSPA2 | association | 0.530 | 1 |
| CCT3 | physical association | 0.400 | 1 |
| H2BC21 | physical association | 0.400 | 1 |
| DNAJB11 | physical association | 0.370 | 1 |
| GADD45A | physical association | 0.370 | 1 |
| GSK3B | physical association | 0.370 | 1 |
| RPS6KA6 | physical association | 0.370 | 1 |
| MUSK | association | 0.350 | 2 |
| PRKAR1B | association | 0.350 | 2 |
| ARL8A | association | 0.350 | 1 |
| BAG5 | association | 0.350 | 1 |
| CCT5 | association | 0.350 | 1 |
| DHX40 | association | 0.350 | 1 |
| LRRC73 | association | 0.350 | 1 |
| PHF1 | association | 0.350 | 1 |
| TBC1D4 | association | 0.350 | 1 |
| VPS35 | association | 0.350 | 1 |
| EGFR | colocalization | 0.270 | 2 |
| PTPRR | proximity | 0.270 | 1 |
| EDRF1 | physical association | 0.000 | 1 |
| FYB2 | physical association | 0.000 | 1 |
| IRF2BP1 | physical association | 0.000 | 1 |
| MLF1 | physical association | 0.000 | 1 |
| NMT1 | physical association | 0.000 | 1 |
BioGRID (210 interactions; top human partners by supporting records): HSPA8 (Co-fractionation; 6 records), BAG5 (Affinity Capture-MS; 3 records), BSCL2 (Affinity Capture-MS; 3 records), FCN1 (Affinity Capture-MS; 3 records), BAG2 (Affinity Capture-MS; 2 records), BAG4 (Affinity Capture-MS; 2 records), CUL3 (Affinity Capture-MS; 2 records), FGFR1 (Affinity Capture-MS; 2 records), HSPA1A (Proximity Label-MS; 2 records), HSPA9 (Affinity Capture-MS; 2 records), HSPBP1 (Affinity Capture-MS; 2 records), JPH4 (Affinity Capture-MS; 2 records), KLHL2 (Affinity Capture-MS; 2 records), LGALS3BP (Affinity Capture-MS; 2 records), LIPG (Affinity Capture-MS; 2 records)
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 31 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Regulation of HSF1-mediated heat shock response | 5 | 30.3× | 1e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| protein folding | 6 | 20.7× | 1e-04 |
| protein stabilization | 5 | 11.2× | 9e-03 |
Disease & clinical
Genetic variants
Variant evidence for DNAJC13: 496 ClinVar records (0 pathogenic / likely pathogenic); 31 GWAS associations.
ClinVar
496 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 237 |
| Likely benign | 59 |
| Benign | 122 |
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 34 predictions of 4,369):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 3:132447319 | acceptor_gain | 1.0000 | |
| 3:132447471–132447472 | donor_loss | 1.0000 | 5 |
| 3:132450645–132450646 | acceptor_loss | 1.0000 | 4 |
| 3:132453594 | acceptor_gain | 1.0000 | |
| 3:132453695–132453696 | donor_loss | 1.0000 | 5 |
| 3:132454064–132454065 | acceptor_loss | 1.0000 | 5 |
| 3:132454158–132454159 | donor_loss | 1.0000 | 5 |
| 3:132456586 | donor_gain | 1.0000 | |
| 3:132456661–132456662 | acceptor_loss | 1.0000 | 6 |
| 3:132456833 | donor_loss | 1.0000 |
AlphaMissense
6,100 missense substitutions predicted likely pathogenic (of 14,827 scored), across 1,490 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| M1207 | 9 | 0.973 | 0.995 |
| M600 | 9 | 0.868 | 0.994 |
| M869 | 9 | 0.834 | 0.969 |
| D1334 | 8 | 0.997 | 0.999 |
| H1332 | 8 | 0.995 | 1.000 |
| F1343 | 8 | 0.991 | 1.000 |
| D1555 | 8 | 0.991 | 0.997 |
| F396 | 8 | 0.990 | 0.999 |
| D911 | 8 | 0.990 | 0.998 |
| D893 | 8 | 0.988 | 0.997 |
| H1218 | 8 | 0.987 | 0.997 |
| N1436 | 8 | 0.986 | 0.999 |
| F552 | 8 | 0.985 | 1.000 |
| F891 | 8 | 0.985 | 0.998 |
| N47 | 8 | 0.984 | 0.999 |
| H859 | 8 | 0.984 | 0.999 |
| N497 | 8 | 0.983 | 0.999 |
| F85 | 8 | 0.982 | 1.000 |
| F853 | 8 | 0.981 | 0.999 |
| D320 | 8 | 0.980 | 0.994 |
HPA cancer prognostics
RNA cancer specificity: Low cancer specificity
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
3 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Kidney Renal Clear Cell Carcinoma (TCGA) | favorable | 2.55e-05 |
| Kidney Chromophobe (TCGA) | unfavorable | 0.000344 |
| Pancreatic Adenocarcinoma (validation) | unfavorable | 0.000635 |
Disease associations
OMIM: gene MIM:614334 | disease phenotypes:
GenCC curated gene-disease
1 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| hereditary late onset Parkinson disease | Supportive | Autosomal dominant |
Genomics England panels (PanelApp)
Clinical diagnostic gene panels including this gene (2 panels, 0 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.
2 panels:
| Panel | Rating |
|---|---|
| Adult-onset neurological disorders | amber |
| Neurodegenerative disorders, adult onset | amber |
Mondo (1): (MONDO:0018466)
HPO phenotypes
34 phenotypes (HPO-id order):
| HPO | Term |
|---|---|
| HP:0000338 | Hypomimic face |
| HP:0000651 | Diplopia |
| HP:0000713 | Agitation |
| HP:0000716 | Depression |
| HP:0000726 | Dementia |
| HP:0000741 | Apathy |
| HP:0000744 | Low frustration tolerance |
| HP:0001268 | Mental deterioration |
| HP:0001300 | Parkinsonism |
| HP:0001332 | Dystonia |
| HP:0001824 | Weight loss |
| HP:0002015 | Dysphagia |
| HP:0002063 | Rigidity |
| HP:0002067 | Bradykinesia |
| HP:0002120 | Cerebral cortical atrophy |
| HP:0002171 | Gliosis |
| HP:0002172 | Postural instability |
| HP:0002304 | Akinesia |
| HP:0002322 | Resting tremor |
| HP:0002359 | Frequent falls |
| HP:0002360 | Sleep disturbance |
| HP:0002362 | Shuffling gait |
| HP:0002367 | Visual hallucination |
| HP:0002548 | Parkinsonism with favorable response to dopaminergic medication |
| HP:0003394 | Muscle spasm |
| HP:0004409 | Hyposmia |
| HP:0004926 | Orthostatic hypotension due to autonomic dysfunction |
| HP:0005340 | Spastic/hyperactive bladder |
| HP:0012450 | Chronic constipation |
| HP:0031435 | Monotonic speech |
| HP:0100315 | Lewy bodies |
| HP:0100660 | Dyskinesia |
| HP:0100710 | Impulsivity |
| HP:0100753 | Schizophrenia |
GWAS associations
showing 30 of 31 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST90002404_477 | Red cell distribution width | 1e-33 |
| GCST90002390_599 | Mean corpuscular hemoglobin | 2e-33 |
| GCST90002392_332 | Mean corpuscular volume | 2e-27 |
| GCST90013406_24 | Liver enzyme levels (alkaline phosphatase) | 9e-23 |
| GCST010204_182 | Low density lipoprotein cholesterol levels | 8e-20 |
| GCST90000025_575 | Appendicular lean mass | 8e-20 |
| GCST010243_139 | Apolipoprotein B levels | 9e-19 |
| GCST010245_186 | LDL cholesterol levels | 1e-18 |
| GCST90002391_36 | Mean corpuscular hemoglobin concentration | 4e-14 |
| GCST90011899_31 | Aspartate aminotransferase levels | 3e-13 |
| GCST010702_110 | Subcortical volume (MOSTest) | 6e-12 |
| GCST90002384_455 | Hemoglobin | 2e-11 |
| GCST90002398_151 | Neutrophil count | 6e-11 |
| GCST004621_188 | Red cell distribution width | 1e-10 |
| GCST010083_109 | Hemoglobin levels | 1e-10 |
| GCST006612_96 | LDL cholesterol | 2e-10 |
| GCST006614_103 | Total cholesterol levels | 2e-10 |
| GCST90002407_52 | White blood cell count | 2e-10 |
| GCST006804_126 | Red cell distribution width | 3e-10 |
| GCST010703_105 | Brain morphology (MOSTest) | 9e-10 |
| GCST005951_87 | Body mass index | 1e-9 |
| GCST008972_126 | Urate levels | 1e-9 |
| GCST008971_15 | Urate levels | 2e-9 |
| GCST005195_118 | Coronary artery disease | 3e-9 |
| GCST010002_440 | Refractive error | 5e-9 |
| GCST010701_111 | Cortical surface area (MOSTest) | 5e-9 |
| GCST90002383_322 | Hematocrit | 5e-9 |
| GCST005196_238 | Coronary artery disease | 2e-8 |
| GCST010699_59 | Brain morphology (min-P) | 5e-8 |
| GCST004571_1 | Iron status biomarkers (total iron binding capacity) | 8e-7 |
EFO canonical traits (from GWAS)
16 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:0006334 | total iron binding capacity |
| EFO:0009188 | Red cell distribution width |
| EFO:0004340 | body mass index |
| EFO:0004611 | low density lipoprotein cholesterol measurement |
| EFO:0004574 | total cholesterol measurement |
| EFO:0004531 | urate measurement |
| EFO:0004509 | hemoglobin measurement |
| EFO:0004615 | apolipoprotein B measurement |
| EFO:0004346 | neuroimaging measurement |
| EFO:0004980 | appendicular lean mass |
| EFO:0004348 | hematocrit |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0004528 | mean corpuscular hemoglobin concentration |
| EFO:0004833 | neutrophil count |
| EFO:0004736 | aspartate aminotransferase measurement |
| EFO:0004533 | alkaline phosphatase measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6067017 (SINGLE PROTEIN)
PharmGKB: 1 entry (CPIC guideline: no)
CTD chemical–gene interactions
39 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases expression, increases expression | 2 |
| Cadmium Chloride | decreases reaction, increases abundance, increases palmitoylation, decreases expression | 2 |
| bisphenol F | increases expression | 1 |
| geldanamycin | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| salinomycin | decreases expression | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| sodium arsenite | decreases expression, increases abundance | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| 2-bromopalmitate | decreases reaction, increases abundance, increases palmitoylation | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| methacrylaldehyde | increases abundance, affects cotreatment, increases oxidation | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| torcetrapib | increases expression | 1 |
| abrine | decreases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation | 1 |
| Arsenic | decreases expression, increases abundance | 1 |
| Cadmium | decreases reaction, increases abundance, increases palmitoylation | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652895 | Binding | Binding affinity to human DNAJC13 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — *ChemMedChem* |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1Q9 | Abcam HeLa DNAJC13 KO | Cancer cell line | Female |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
showing 60 of 300 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT00165763 | Phase 4 | COMPLETED | Efficacy and Safety of Donepezil Hydrochloride (Aricept) in Vascular Dementia |
| NCT00847860 | Phase 4 | COMPLETED | Cilostazol Verse Asprin for Vascular Dementia in Poststroke Patients With White Matter Lesions |
| NCT00947531 | Phase 4 | COMPLETED | A Clinical Trial to Evaluate the Safety and Efficacy of 20 ml Cerebrolysin in Patients With Vascular Dementia |
| NCT00950430 | Phase 4 | ENROLLING_BY_INVITATION | Imaging of Brain Amyloid Plaques in the Aging Population |
| NCT00455143 | Phase 4 | TERMINATED | Cognitive Protection - Dexmedetomidine and Cognitive Reserve |
| NCT00561678 | Phase 4 | COMPLETED | Perioperative Cognitive Function - Dexmedetomidine and Cognitive Reserve |
| NCT01807481 | Phase 4 | UNKNOWN | Phase IV Study to Evaluate the Efficacy and Safety of Mircera in PD |
| NCT00439699 | Phase 4 | COMPLETED | A Pilot Clinical Trial Of Memantine for Essential Tremor |
| NCT00584376 | Phase 4 | COMPLETED | Pregabalin (Lyrica) for the Treatment of Essential Tremor |
| NCT00998660 | Phase 4 | COMPLETED | RECHARGE Sub-Study to the Implantable Systems Performance Registry (ISPR) |
| NCT02111369 | Phase 4 | COMPLETED | Propranolol and Botulinum Toxin for Essential Vocal Tremor |
| NCT02495883 | Phase 4 | COMPLETED | Functional Imaging of Tremor Circuits and Mechanisms of Treatment Response |
| NCT00099216 | Phase 3 | COMPLETED | Efficacy and Safety of Rivastigmine Capsules in Patients With Probable Vascular Dementia |
| NCT00130338 | Phase 3 | COMPLETED | Rivastigmine Capsules in Patients With Probable Vascular Dementia |
| NCT00209456 | Phase 3 | COMPLETED | Dopamine Transporter Scintigraphy Imaging (DAT-Imaging) in Patients With Lewy Body Dementia |
| NCT00249158 | Phase 3 | COMPLETED | A Study of the Effectiveness and Safety of Risperidone in the Treatment of Behavioral Disturbances in Patients With Dementia |
| NCT00261573 | Phase 3 | COMPLETED | A Study of the Safety and Effectiveness of Galantamine Versus Placebo in the Treatment of Patients With Vascular Dementia or Mixed Dementia |
| NCT00621647 | Phase 3 | COMPLETED | Seroquel- Agitation Associated With Dementia |
| NCT02453932 | Phase 3 | COMPLETED | Efficacy and Safety of Tianzhi Granule in Mild to Moderate Vascular Dementia |
| NCT03682185 | Phase 3 | COMPLETED | The Healthy Patterns Sleep Study |
| NCT03789760 | Phase 3 | COMPLETED | The Clinical Trial of Chinese Herbal Medicine (SaiLuoTong) Capsule |
| NCT03804229 | Phase 3 | ACTIVE_NOT_RECRUITING | Efficacy and Safety of Butylphthalide Soft Capsule for the Treatment of Vascular Dementia |
| NCT03986424 | Phase 3 | COMPLETED | Local Study of Akatinol Memantine in VaD in Russia |
| NCT04552041 | Phase 3 | COMPLETED | Prospekta in the Treatment of Cognitive, Behavioral and Psychiatric Disorders in Patients With Vascular Dementia. |
| NCT07015671 | Phase 3 | COMPLETED | Bioavailability and Bioequivalence Study of ER Torsemide and Spironolactone FDC Tablet in Healthy Subjects |
| NCT00018564 | Phase 3 | COMPLETED | Novel Therapies for Essential Tremor |
| NCT00236496 | Phase 3 | COMPLETED | A Comparison of the Efficacy and Safety of Topiramate Versus Placebo in Treating Tremor of Unknown Cause. |
| NCT01441284 | Phase 3 | WITHDRAWN | Efficacy of Pramipexole Extended Release in the Treatment of Essential Tremor |
| NCT04193527 | Phase 3 | COMPLETED | A Study to Evaluate the Diagnostic Efficacy of DaTSCAN™ Ioflupane (123I) Injection in Single Photon Emission Computed Tomography (SPECT) for the Diagnosis of Parkinsonian Syndrome (PS) in Chinese Patients |
| NCT04265209 | Phase 3 | COMPLETED | [18F] LBT-999 PET Compared to [123I]-FP/CIT SPECT to Distinguish Between Parkinson’s Diseases and Essential Tremor |
| NCT06087276 | Phase 3 | ACTIVE_NOT_RECRUITING | Essential 3 - Decentralized, Phase 3 Study Evaluating the Safety and Efficacy of Ulixacaltamide in Essential Tremor (ET) |
| NCT01466543 | Phase 2 | UNKNOWN | Effect of Zydena (Udenafil) on Cerebral Blood Flow and Peripheral Blood Viscosity |
| NCT01475578 | Phase 2 | COMPLETED | Study of STA-1 Capsule in Patients With Vascular Dementia (Marrow-Sea Deficiency) |
| NCT01608217 | Phase 2 | COMPLETED | Delta-THC in Dementia |
| NCT01761227 | Phase 2 | COMPLETED | Efficacy and Safety of Fufangdanshen Tablets in Mild to Moderate Vascular Dementia |
| NCT01953705 | Phase 2 | UNKNOWN | n-3 PUFA for Vascular Cognitive Aging |
| NCT01965756 | Phase 2 | COMPLETED | Effect of Insulin Sensitizer Metformin on AD Biomarkers |
| NCT01978730 | Phase 2 | UNKNOWN | The Clinical Trial of Chinese Herbal Medicine SaiLuoTong Capsule |
| NCT02467413 | Phase 2 | WITHDRAWN | BAC in Patient With Alzheimer’s Disease or Vascular Dementia |
| NCT03230071 | Phase 2 | COMPLETED | Efficacy and Safety of TMBCZG in Mild to Moderate Vascular Dementia |
| NCT04109963 | Phase 2 | UNKNOWN | Trial of Remote Ischemic Pre-conditioning in Vascular Cognitive Impairment |
| NCT05371639 | Phase 2 | UNKNOWN | Efficacy and Safety of Tian Ma Bian Chun Zhi Gan Tablets in Mild to Moderate Vascular Dementia |
| NCT00080366 | Phase 2 | COMPLETED | Octanol to Treat Essential Tremor |
| NCT00102596 | Phase 2 | COMPLETED | Clinical Trial Characterizing the Bioavailability of 1-Octanol in Adults With Ethanol-responsive Essential Tremor |
| NCT00223743 | Phase 2 | COMPLETED | A Safety/Efficacy Trial of Zonisamide for Essential Tremor |
| NCT00321087 | Phase 2 | TERMINATED | A Study of T2000 in Essential Tremor |
| NCT00598078 | Phase 2 | COMPLETED | Multiple-dose,Double-blind,Placebo-controlled Study of Sodium Oxybate in Patients With Essential Tremor |
| NCT00655278 | Phase 2 | TERMINATED | T2000 in Essential Tremor - Open Label Continuation |
| NCT01332695 | Phase 2 | COMPLETED | A Pilot Efficacy and Safety Study of ST101 in Essential Tremor |
| NCT02277106 | Phase 2 | COMPLETED | Evaluate SAGE-547 in Participants With Essential Tremor |
| NCT02551848 | Phase 2 | UNKNOWN | Kinematic-based BoNT-A Injections for Bilateral ET |
| NCT02668146 | Phase 2 | UNKNOWN | An Efficacy/Safety Study of Perampanel for Reducing Essential Tremor |
| NCT02978781 | Phase 2 | COMPLETED | A Study to Evaluate SAGE-217 in Participants With Essential Tremor |
| NCT03101241 | Phase 2 | COMPLETED | A Phase 2 RCT Study of CX-8998 for Essential Tremor |
| NCT03688685 | Phase 2 | COMPLETED | A Clinical Study to Evaluate CAD-1883 in Essential Tremor |
| NCT03780426 | Phase 2 | COMPLETED | tSMS in Essential Tremor |
| NCT04305275 | Phase 2 | COMPLETED | A Study to Evaluate the Efficacy, Safety, and Tolerability of SAGE-324 in Participants With Essential Tremor |
| NCT04727658 | Phase 2 | TERMINATED | Linac FRACtionated Radiosurgical THALamotomie in Tremors (FRACTHAL) |
| NCT04880616 | Phase 2 | COMPLETED | Safety, Efficacy, and Tolerability of NBI-827104 for the Treatment of Essential Tremor |
| NCT05021978 | Phase 2 | COMPLETED | A Clinical Trial of PRAX-944 in Participants With Essential Tremor |
Predicted chemistry — Sugi Predict
The predicted patent-compound landscape for DNAJC13 across ~30M SureChEMBL compounds — explore on Sugi Predict.
Related Atlas pages
- Associated diseases: late-onset Parkinson disease
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): essential tremor, late-onset Parkinson disease, Parkinson disease 21, vascular dementia