DNASE1L1
geneOn this page
Also known as DNAS1L1XIBDNASEX
Summary
DNASE1L1 (deoxyribonuclease 1 like 1, HGNC:2957) is a protein-coding gene on chromosome Xq28, encoding Deoxyribonuclease-1-like 1 (P49184).
This gene encodes a deoxyribonuclease protein that shows high sequence similarity to DNase I. The encoded protein is localized to the endoplasmic reticulum and modified by N-linked glycosylation. Alternate transcriptional splice variants encoding the same protein have been observed.
Source: NCBI Gene 1774 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 151 total — 5 pathogenic, 4 likely-pathogenic
- Phenotypes (HPO): 1
- MANE Select transcript:
NM_001303620
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2957 |
| Approved symbol | DNASE1L1 |
| Name | deoxyribonuclease 1 like 1 |
| Location | Xq28 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DNAS1L1, XIB, DNASEX |
| Ensembl gene | ENSG00000013563 |
| Ensembl biotype | protein_coding |
| OMIM | 300081 |
| Entrez | 1774 |
Gene structure
Transcript identifiers
Ensembl transcripts: 38 — 37 protein_coding, 1 retained_intron
ENST00000014935, ENST00000309585, ENST00000369807, ENST00000369808, ENST00000369809, ENST00000393638, ENST00000412184, ENST00000424626, ENST00000432135, ENST00000447892, ENST00000451865, ENST00000497242, ENST00000862481, ENST00000862482, ENST00000862483, ENST00000862484, ENST00000862485, ENST00000862486, ENST00000862487, ENST00000862488, ENST00000862489, ENST00000862490, ENST00000862491, ENST00000862492, ENST00000862493, ENST00000862494, ENST00000862495, ENST00000931108, ENST00000965224, ENST00000965225, ENST00000965226, ENST00000965227, ENST00000965228, ENST00000965229, ENST00000965230, ENST00000965231, ENST00000965232, ENST00000965233
RefSeq mRNA: 5 — MANE Select: NM_001303620
NM_001009932, NM_001009933, NM_001009934, NM_001303620, NM_006730
CCDS: CCDS14747
Canonical transcript exons
ENST00000369807 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000678409 | 154402942 | 154403190 |
| ENSE00000678413 | 154403522 | 154403622 |
| ENSE00000678418 | 154404995 | 154405083 |
| ENSE00001450964 | 154409112 | 154409254 |
| ENSE00001450968 | 154405434 | 154405655 |
| ENSE00003549633 | 154403269 | 154403381 |
| ENSE00003790806 | 154404828 | 154404914 |
| ENSE00003850463 | 154401236 | 154402841 |
Expression profiles
Bgee: expression breadth ubiquitous, 283 present calls, max score 96.91.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 20.8145 / max 149.9216, expressed in 1806 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 201012 | 9.5503 | 1578 |
| 201016 | 4.8815 | 1681 |
| 201013 | 4.6807 | 1416 |
| 201011 | 1.0519 | 598 |
| 201015 | 0.3469 | 153 |
| 201014 | 0.3032 | 143 |
Top tissues by expression
300 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| hindlimb stylopod muscle | UBERON:0004252 | 96.91 | gold quality |
| gastrocnemius | UBERON:0001388 | 96.59 | gold quality |
| gluteal muscle | UBERON:0002000 | 96.44 | gold quality |
| muscle of leg | UBERON:0001383 | 96.05 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 95.98 | gold quality |
| biceps brachii | UBERON:0001507 | 95.95 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 95.94 | gold quality |
| vastus lateralis | UBERON:0001379 | 95.87 | gold quality |
| muscle organ | UBERON:0001630 | 95.87 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 95.87 | gold quality |
| quadriceps femoris | UBERON:0001377 | 95.60 | gold quality |
| apex of heart | UBERON:0002098 | 95.20 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 94.95 | gold quality |
| stromal cell of endometrium | CL:0002255 | 94.92 | gold quality |
| triceps brachii | UBERON:0001509 | 94.44 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 93.15 | gold quality |
| deltoid | UBERON:0001476 | 92.88 | gold quality |
| monocyte | CL:0000576 | 92.87 | gold quality |
| mononuclear cell | CL:0000842 | 92.56 | gold quality |
| leukocyte | CL:0000738 | 92.40 | gold quality |
| muscle tissue | UBERON:0002385 | 92.14 | gold quality |
| heart left ventricle | UBERON:0002084 | 91.60 | gold quality |
| body of tongue | UBERON:0011876 | 91.52 | gold quality |
| right atrium auricular region | UBERON:0006631 | 91.51 | gold quality |
| cardiac ventricle | UBERON:0002082 | 91.49 | gold quality |
| cardiac atrium | UBERON:0002081 | 90.51 | gold quality |
| parotid gland | UBERON:0001831 | 90.45 | gold quality |
| right coronary artery | UBERON:0001625 | 90.40 | gold quality |
| heart | UBERON:0000948 | 90.30 | gold quality |
| granulocyte | CL:0000094 | 90.22 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 3.62 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
53 targeting DNASE1L1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-2681-5P | 99.75 | 67.64 | 1655 |
| HSA-MIR-3202 | 99.66 | 67.70 | 2737 |
| HSA-MIR-7156-5P | 99.64 | 68.81 | 1369 |
| HSA-MIR-762 | 99.58 | 66.61 | 1994 |
| HSA-MIR-12131 | 99.48 | 68.72 | 1673 |
| HSA-MIR-1275 | 99.47 | 67.90 | 2749 |
| HSA-MIR-4498 | 99.47 | 67.42 | 2360 |
| HSA-MIR-4273 | 99.45 | 67.93 | 1206 |
| HSA-MIR-3911 | 99.38 | 66.95 | 1087 |
| HSA-MIR-6808-5P | 99.31 | 66.23 | 2150 |
| HSA-MIR-6893-5P | 99.31 | 66.25 | 2119 |
| HSA-MIR-329-5P | 99.27 | 68.11 | 1597 |
| HSA-MIR-133A-3P | 99.27 | 71.53 | 1270 |
| HSA-MIR-133B | 99.27 | 71.53 | 1270 |
| HSA-MIR-6852-5P | 99.17 | 66.69 | 2073 |
| HSA-MIR-1911-3P | 99.15 | 66.17 | 528 |
| HSA-MIR-8070 | 99.07 | 69.30 | 1303 |
| HSA-MIR-4651 | 99.06 | 67.57 | 2002 |
| HSA-MIR-5001-5P | 99.05 | 66.76 | 1972 |
| HSA-MIR-608 | 98.93 | 67.83 | 2013 |
| HSA-MIR-29B-1-5P | 98.86 | 68.35 | 1364 |
| HSA-MIR-7851-3P | 98.72 | 64.88 | 980 |
| HSA-MIR-7155-5P | 98.65 | 66.14 | 1290 |
| HSA-MIR-7977 | 98.65 | 66.18 | 2590 |
Literature-anchored findings (GeneRIF, showing 6)
- Genotyping of all the non-synonymous SNPs of was performed in three ethnic groups including six different populations using the PCR-RFLP method newly developed. (PMID:20503202)
- Several SNPs in the deoxyribonuclease I-like 1 (DNase 1L1) and DNase 1L2 were investigated. (PMID:20967767)
- Yeast two-hybrid screening revealed that DNase X, a glycosylphosphatidyl inositol-anchored mammalian cell-surface protein binds EtpE-C. (PMID:24098122)
- DNASEX and TKTL1 detection in patient blood is associated with poor disease-free survival rate in oral squamous cell carcinoma. (PMID:24304513)
- genotyping of all 21 nonsynonymous DNase 1L1 SNPs was performed in 16 populations representing 3 ethnic groups; 2 activity-abolishing and 4 activity-reducing SNPs were confirmed to be functional; may be plausible that a minor allele of 6 SNPs producing a loss-of-function or low-activity variant could serve as a risk factor for disease (PMID:24329527)
- Analysis of tafazzin and deoxyribonuclease 1 like 1 transcripts and X chromosome sequencing in the evaluation of the effect of mosaicism in the TAZ gene on phenotypes in a family affected by Barth syndrome. (PMID:36628843)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | dnase1l1 | ENSDARG00000005464 |
| mus_musculus | Dnase1l1 | ENSMUSG00000019088 |
| rattus_norvegicus | Dnase1l1 | ENSRNOG00000055641 |
Paralogs (3): DNASE1L3 (ENSG00000163687), DNASE1L2 (ENSG00000167968), DNASE1 (ENSG00000213918)
Protein
Protein identifiers
Deoxyribonuclease-1-like 1 — P49184 (reviewed: P49184)
Alternative names: DNase X, Deoxyribonuclease I-like 1, Muscle-specific DNase I-like, XIB
All UniProt accessions (6): P49184, A3KQT1, A6QRJ0, E7ESG1, E7EUJ0, Q5HY40
UniProt curated annotations — full annotation on UniProt →
Subcellular location. Endoplasmic reticulum.
Tissue specificity. Highest levels in skeletal and cardiac muscles. Detectable in all other tissues tested except brain.
Similarity. Belongs to the DNase I family.
RefSeq proteins (5): NP_001009932, NP_001009933, NP_001009934, NP_001290549, NP_006721 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR005135 | Endo/exonuclease/phosphatase | Domain |
| IPR016202 | DNase_I | Family |
| IPR018057 | Deoxyribonuclease-1_AS | Active_site |
| IPR033125 | DNASE_I_2 | Conserved_site |
| IPR036691 | Endo/exonu/phosph_ase_sf | Homologous_superfamily |
Pfam: PF03372
UniProt features (11 total): sequence conflict 4, active site 2, signal peptide 1, chain 1, glycosylation site 1, disulfide bond 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P49184-F1 | 90.83 | 0.84 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 97; 148
Disulfide bonds (1): 187–224
Glycosylation sites (1): 261
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-6798695 | Neutrophil degranulation |
MSigDB gene sets: 137 (showing top):
GOMF_ENDONUCLEASE_ACTIVITY, REACTOME_INNATE_IMMUNE_SYSTEM, GOCC_SECRETORY_GRANULE, GOMF_NUCLEASE_ACTIVITY, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_DNA_CATABOLIC_PROCESS, MODULE_360, RICKMAN_TUMOR_DIFFERENTIATED_MODERATELY_VS_POORLY_UP, CONCANNON_APOPTOSIS_BY_EPOXOMICIN_DN, GOMF_DNA_ENDONUCLEASE_ACTIVITY, RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_DN, GOCC_SECRETORY_VESICLE, GOCC_VESICLE_LUMEN, GOCC_SPECIFIC_GRANULE, MARSON_BOUND_BY_FOXP3_UNSTIMULATED
GO Biological Process (2): DNA metabolic process (GO:0006259), DNA catabolic process (GO:0006308)
GO Molecular Function (8): DNA binding (GO:0003677), deoxyribonuclease I activity (GO:0004530), DNA nuclease activity (GO:0004536), catalytic activity (GO:0003824), nuclease activity (GO:0004518), endonuclease activity (GO:0004519), protein binding (GO:0005515), hydrolase activity (GO:0016787)
GO Cellular Component (4): extracellular region (GO:0005576), nucleus (GO:0005634), endoplasmic reticulum (GO:0005783), specific granule lumen (GO:0035580)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Innate Immune System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| nuclease activity | 2 |
| intracellular membrane-bounded organelle | 2 |
| nucleic acid metabolic process | 1 |
| DNA nuclease activity | 1 |
| DNA metabolic process | 1 |
| nucleic acid catabolic process | 1 |
| nucleic acid binding | 1 |
| DNA endonuclease activity, producing 5’-phosphomonoesters | 1 |
| catalytic activity, acting on DNA | 1 |
| molecular_function | 1 |
| catalytic activity, acting on a nucleic acid | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cellular anatomical structure | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| secretory granule lumen | 1 |
| specific granule | 1 |
Protein interactions and networks
STRING
838 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DNASE1L1 | BSG | P35613 | 593 |
| DNASE1L1 | DNASE2B | Q8WZ79 | 556 |
| DNASE1L1 | DNASE2 | O00115 | 554 |
| DNASE1L1 | ERVFRD-1 | P60508 | 539 |
| DNASE1L1 | ERV3-1 | Q14264 | 539 |
| DNASE1L1 | ERVW-1 | Q9UQF0 | 524 |
| DNASE1L1 | DFFB | O76075 | 476 |
| DNASE1L1 | PRRC1 | Q96M27 | 392 |
| DNASE1L1 | TSPYL4 | Q9UJ04 | 361 |
| DNASE1L1 | SHISAL1 | Q3SXP7 | 352 |
| DNASE1L1 | NFASC | O94856 | 350 |
| DNASE1L1 | WASL | O00401 | 348 |
| DNASE1L1 | FAM222B | Q8WU58 | 348 |
| DNASE1L1 | HNRNPK | P61978 | 344 |
| DNASE1L1 | WAS | P42768 | 329 |
IntAct
44 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| DNASE1L1 | HSPA5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DNASE1L1 | BDNF | psi-mi:“MI:0915”(physical association) | 0.560 |
| CALR | DNASE1L1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DNASE1L1 | SERPINH1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DNASE1L1 | CDH1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DNASE1L1 | DLST | psi-mi:“MI:0915”(physical association) | 0.560 |
| DNASE1L1 | GRN | psi-mi:“MI:0915”(physical association) | 0.560 |
| DNASE1L1 | PECAM1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DNASE1L1 | TGFBR2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DNASE1L1 | WFS1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CDK5R1 | DNASE1L1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DNASE1L1 | NEK7 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (130): GFAP (Affinity Capture-MS), SPCS2 (Affinity Capture-MS), SPCS1 (Affinity Capture-MS), LRRC15 (Affinity Capture-MS), DNASE1L1 (Affinity Capture-MS), GFAP (Affinity Capture-MS), SPCS1 (Affinity Capture-MS), SPCS2 (Affinity Capture-MS), DNASE1L1 (Affinity Capture-MS), DNASE1L1 (Proximity Label-MS), DNASE1L1 (Affinity Capture-MS), DNASE1L1 (Affinity Capture-MS), DNASE1L1 (Two-hybrid), DNASE1L1 (Affinity Capture-RNA), HSPA5 (Affinity Capture-MS)
ESM2 similar proteins: O18835, O18998, O42446, O55070, O77588, O77695, O89107, O97524, O97860, P00639, P04066, P08236, P11936, P11937, P12265, P13686, P21704, P22412, P24855, P49183, P49184, P70158, Q01459, Q01460, Q02809, Q13609, Q2QDE6, Q2QDE7, Q2QDE9, Q2QDF0, Q2QDF1, Q4AEE3, Q4FAT7, Q4FZV0, Q5R5N6, Q5R9N3, Q5RFI5, Q63321, Q641Z7, Q6AYS4
Diamond homologs: O18998, O42446, O55070, O89107, P00639, P11936, P11937, P21704, P24855, P49183, P49184, Q13609, Q2QDE6, Q2QDE7, Q2QDE9, Q2QDF0, Q2QDF1, Q4AEE3, Q767J3, Q92874, Q9D1G0, Q9D7J6, Q9YGI5, D3SGB1
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
151 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 5 |
| Likely pathogenic | 4 |
| Uncertain significance | 51 |
| Likely benign | 25 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (9)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1319559 | NM_000116.5(TAFAZZIN):c.18_22dup (p.Pro8fs) | Pathogenic |
| 146128 | GRCh38/hg38 Xq28(chrX:153296806-154604471)x2 | Pathogenic |
| 1808722 | GRCh37/hg19 Xq25-28(chrX:124749464-155233731)x1 | Pathogenic |
| 4527096 | NM_000116.5(TAFAZZIN):c.109+1G>A | Pathogenic |
| 686720 | GRCh37/hg19 Xq28(chrX:153255132-153636707)x3 | Pathogenic |
| 11106 | NM_000116.5(TAFAZZIN):c.109+5G>C | Likely pathogenic |
| 2506893 | NM_000116.5(TAFAZZIN):c.54_55del (p.Leu19fs) | Likely pathogenic |
| 2506901 | NM_000116.5(TAFAZZIN):c.51G>A (p.Trp17Ter) | Likely pathogenic |
| 2506902 | NM_000116.5(TAFAZZIN):c.124del (p.His41_Leu42insTer) | Likely pathogenic |
SpliceAI
1628 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| X:154402943:T:TA | donor_gain | 1.0000 |
| X:154402944:C:A | donor_gain | 1.0000 |
| X:154402946:T:TA | donor_gain | 1.0000 |
| X:154403186:ACGTC:A | acceptor_gain | 1.0000 |
| X:154403187:CGTC:C | acceptor_gain | 1.0000 |
| X:154403187:CGTCC:C | acceptor_gain | 1.0000 |
| X:154403188:GTC:G | acceptor_gain | 1.0000 |
| X:154403188:GTCC:G | acceptor_loss | 1.0000 |
| X:154403189:TC:T | acceptor_gain | 1.0000 |
| X:154403189:TCCTA:T | acceptor_loss | 1.0000 |
| X:154403190:CC:C | acceptor_gain | 1.0000 |
| X:154403191:C:CC | acceptor_gain | 1.0000 |
| X:154403191:CTAGA:C | acceptor_loss | 1.0000 |
| X:154404845:CGT:C | donor_gain | 1.0000 |
| X:154404910:CAAAT:C | acceptor_gain | 1.0000 |
| X:154404915:C:CC | acceptor_gain | 1.0000 |
| X:154404988:T:TA | donor_gain | 1.0000 |
| X:154404989:CCTCA:C | donor_loss | 1.0000 |
| X:154404990:CTCA:C | donor_loss | 1.0000 |
| X:154404991:TCA:T | donor_loss | 1.0000 |
| X:154404992:CACCG:C | donor_loss | 1.0000 |
| X:154404993:A:AC | donor_gain | 1.0000 |
| X:154404994:C:CC | donor_gain | 1.0000 |
| X:154404994:CCG:C | donor_gain | 1.0000 |
| X:154404994:CCGA:C | donor_gain | 1.0000 |
| X:154405083:TC:T | acceptor_loss | 1.0000 |
| X:154405084:C:CA | acceptor_loss | 1.0000 |
| X:154405427:AACTT:A | donor_loss | 1.0000 |
| X:154405428:ACTTA:A | donor_loss | 1.0000 |
| X:154405429:CTTAC:C | donor_loss | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000334088 (X:154410379 C>A,T), RS1000448721 (X:154410845 C>T), RS1000824671 (X:154401348 A>G,T), RS1002008336 (X:154408701 A>G), RS1002044696 (X:154408986 A>C,G), RS1002704203 (X:154404358 T>G), RS1003686519 (X:154405929 G>T), RS1004122644 (X:154406293 G>A), RS1004664672 (X:154406331 C>G,T), RS1004764976 (X:154406937 C>A,G), RS1005227439 (X:154402336 C>A,G), RS1005488594 (X:154411574 G>C), RS1006232127 (X:154404415 C>A), RS1006697974 (X:154401272 C>T), RS1006862123 (X:154409911 G>A,C)
Disease associations
OMIM: gene MIM:300081 | disease phenotypes: MIM:300049, MIM:304120, MIM:309350, MIM:305620, MIM:302060, MIM:226000
GenCC curated gene-disease
Mondo (10): heterotopia, periventricular, X-linked dominant (MONDO:0010233), otopalatodigital syndrome type 2 (MONDO:0010571), Melnick-Needles syndrome (MONDO:0010650), frontometaphyseal dysplasia (MONDO:0015942), frontometaphyseal dysplasia 1 (MONDO:0024550), Barth syndrome (MONDO:0010543), X-linked Emery-Dreifuss muscular dystrophy (MONDO:0010680), dilated cardiomyopathy (MONDO:0005021), endocardial fibroelastosis (MONDO:0009169), cardiomyopathy (MONDO:0004994)
Orphanet (12): Frontometaphyseal dysplasia (Orphanet:1826), Nodular neuronal heterotopia (Orphanet:2149), Melnick-Needles syndrome (Orphanet:2484), OBSOLETE: Otopalatodigital syndrome (Orphanet:669), Ehlers-Danlos syndrome with periventricular heterotopia (Orphanet:82004), Otopalatodigital syndrome type 2 (Orphanet:90652), Barth syndrome (Orphanet:111), Emery-Dreifuss muscular dystrophy (Orphanet:261), X-linked Emery-Dreifuss muscular dystrophy (Orphanet:98863), Endocardial fibroelastosis (Orphanet:2022), Dilated cardiomyopathy (Orphanet:217604), Rare cardiomyopathy (Orphanet:167848)
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0001644 | Dilated cardiomyopathy |
GWAS associations
0 associations (top):
MeSH disease descriptors (7)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D056889 | Barth Syndrome | C14.240.400.172; C14.280.400.172; C16.131.077.121; C16.131.240.400.172; C16.320.322.068; C16.320.565.398.224; C18.452.584.563.224; C18.452.648.398.224 |
| D009202 | Cardiomyopathies | C14.280.238 |
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
| D004695 | Endocardial Fibroelastosis | C14.280.238.281 |
| D000083143 | X-Linked Emery-Dreifuss Muscular Dystrophy | C05.651.534.500.350.500; C10.668.491.175.500.350.500; C16.320.322.625.500; C16.320.577.350.500 |
| C538064 | Frontometaphyseal dysplasia (supp.) | |
| C538089 | Oto-palato-digital syndrome, type 2 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
33 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases methylation, affects cotreatment, decreases expression, affects expression | 6 |
| Benzo(a)pyrene | affects methylation, increases methylation | 2 |
| Tetrachlorodibenzodioxin | increases expression | 2 |
| GSK-J4 | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| trichostatin A | decreases expression | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| isobutyl alcohol | decreases expression, increases abundance, affects cotreatment | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| gardiquimod | decreases expression, decreases reaction | 1 |
| Zoledronic Acid | increases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Gasoline | affects cotreatment, decreases expression, increases abundance | 1 |
| Polycyclic Aromatic Hydrocarbons | affects cotreatment, decreases expression, increases abundance | 1 |
| Quercetin | increases expression | 1 |
| Smoke | decreases expression | 1 |
| T-2 Toxin | decreases expression | 1 |
| Tobacco Smoke Pollution | affects expression | 1 |
| Tretinoin | increases expression | 1 |
| Vanadates | increases expression | 1 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | increases expression | 1 |
| Cyclosporine | increases expression | 1 |
| Aflatoxin B1 | decreases methylation | 1 |
| Cadmium Chloride | increases expression | 1 |
| Copper Sulfate | increases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D7NU | Ubigene A-549 DNASE1L1 KO | Cancer cell line | Male |
Clinical trials (associated diseases)
299 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05857085 | PHASE4 | COMPLETED | Novel Therapeutics and Endothelial Dysfunction in T1DM Patients |
| NCT07531251 | PHASE4 | NOT_YET_RECRUITING | Clinical Trial in Patients With Barth Syndrome- 4TAZPower |
| NCT00374465 | PHASE4 | UNKNOWN | Therapy With Verapamil or Carvedilol in Chronic Heart Failure |
| NCT01293903 | PHASE4 | COMPLETED | Study of Qiliqiangxin Capsule to Treat Dilated Cardiomyopathy |
| NCT01557140 | PHASE4 | COMPLETED | A Randomized Trial of Carvedilol in Chronic Chagas Cardiomyopathy |
| NCT01917149 | PHASE4 | COMPLETED | Supramaximal Titrated Inhibition of RAAS in Dilated Cardiomyopathy |
| NCT02115581 | PHASE4 | COMPLETED | Coenzyme Q10 Supplementation in Children With Idiopathic Dilated Cardiomyopathy |
| NCT06236022 | PHASE4 | RECRUITING | The Effects of Sirolimus in Patients With Dilated Cardiomyopathy Infected With Kaposi Sarcoma-associated Virus |
| NCT00348530 | PHASE4 | UNKNOWN | Carvedilol Versus Verapamil in Chronic Heart Failure Secondary to Non-Ischemic Cardiomyopathy |
| NCT00371891 | PHASE4 | COMPLETED | Ontario Multidetector Computed Tomographic (MDCT) Coronary Angiography Study (OMCAS) |
| NCT00401856 | PHASE4 | COMPLETED | CMR to Assess Fibrosis in Cardiomyopathy Using Eplerenone |
| NCT00559338 | PHASE4 | COMPLETED | Impact of Nesiritide Infusion for Decompensated Heart Failure in the Emergency Department |
| NCT00606775 | PHASE4 | UNKNOWN | The Preventive Efficacy of Carvedilol on Cardiac Dysfunction in Duchenne Muscular Dystrophy |
| NCT00658203 | PHASE4 | COMPLETED | Clinical Evaluation on Advanced Resynchronization |
| NCT00701220 | PHASE4 | COMPLETED | Statin Therapy for Ischemic and Nonischemic Cardiomyopathy |
| NCT00800761 | PHASE4 | COMPLETED | Intensive Combined Chelation Therapy for Iron-Induced Cardiac Disease in Patients With Thalassemia Major |
| NCT00806390 | PHASE4 | TERMINATED | Prevention of Anthracycline or Trastuzumab Induced Cardiomyopathy by Metoprolol |
| NCT01006473 | PHASE4 | COMPLETED | Exercise Training in Chagas Cardiomyopathy |
| NCT01261065 | PHASE4 | COMPLETED | Mechanisms of Improvement With Beta-Blocker Treatment in Heart Failure |
| NCT01345188 | PHASE4 | COMPLETED | Ranolazine in Ischemic Cardiomyopathy |
| NCT01868841 | PHASE4 | COMPLETED | 123-I mIBG (AdreView) Heart-to-Mediastinal (H/M) Ratio and SPECT Imaging on a Small Field of View-High Efficiency Cardiac SPECT System |
| NCT02640846 | PHASE4 | UNKNOWN | Effects of Levosimendan, Milrinone and Norepinephrine on Left and Right Ventricular Function in Septic Shock |
| NCT03228823 | PHASE4 | UNKNOWN | Prospective Assessment of Premature Ventricular Contractions Suppression in Cardiomyopathy(PAPS) |
| NCT04323852 | PHASE4 | COMPLETED | Can Vitamin D Reduce Heart Muscle Damage After Bypass Surgery? |
| NCT05034432 | PHASE4 | RECRUITING | The PIVATAL Study -Study of Ventricular Arrhythmia (VTA) Ablation in Left Ventricular Assist Device (LVAD) Patients |
| NCT05718128 | PHASE4 | RECRUITING | Clinical Study of Endocardial Myocardial Biopsy |
| NCT06964464 | PHASE4 | RECRUITING | Comparative Effectiveness of Carvedilol Versus Metoprolol Succinate in Heart Failure Patients With an Implantable Cardioverter Defibrillator |
| NCT00333827 | PHASE3 | COMPLETED | Cell Therapy In Dilated Cardiomyopathy |
| NCT00505154 | PHASE3 | COMPLETED | Effect of Rosuvastatin on Left Ventricular Remodeling |
| NCT01223703 | PHASE3 | COMPLETED | PUFAs and Left Ventricular Function in Heart Failure |
| NCT01583114 | PHASE3 | TERMINATED | PREclinical Mutation CARriers From Families With DIlated Cardiomyopathy and ACE Inhibitors |
| NCT01914081 | PHASE3 | UNKNOWN | Resveratrol: A Potential Anti- Remodeling Agent in Heart Failure, From Bench to Bedside |
| NCT02989181 | PHASE3 | UNKNOWN | Continues Positive Airway Pressure Treatment for Patients With Dilated Cardiomyopathy and Obstructive Sleep Apnea |
| NCT03439514 | PHASE3 | TERMINATED | A Study of ARRY-371797 (PF-07265803) in Patients With Symptomatic Dilated Cardiomyopathy Due to a Lamin A/C Gene Mutation |
| NCT05237323 | PHASE3 | COMPLETED | Micophenolate Mofetil Versus Azathioprine in Myocarditis |
| NCT05849766 | PHASE3 | COMPLETED | Effect of Dapagliflozin on Cardiac Structure, Function and Secondary Mitral Regurgitation in Patients with Left Ventricle Dysfunction |
| NCT06250257 | PHASE3 | RECRUITING | Bromocriptine in Dilated Cardiomyopathy Among Women of Reproductive Age |
| NCT00170183 | PHASE3 | COMPLETED | Brain Natriuretic Peptide (BNP) to Preserve Renal Function in Hospitalized Patients With Heart Failure |
| NCT00270387 | PHASE3 | COMPLETED | A Study of Short-Term Outcomes and Economic Impact For Patients With Worsening Congestive Heart Failure When Natrecor (Nesiritide) is Added to Standard-Care Therapy, Compared to Administration of Placebo With Standard-Care Therapy |
| NCT00321295 | PHASE3 | COMPLETED | Biventricular Pacing In Patients With Left Ventricular Dysfunction After Cardiovascular Surgery |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Barth syndrome, endocardial fibroelastosis, frontometaphyseal dysplasia, frontometaphyseal dysplasia 1, heterotopia, periventricular, X-linked dominant, Melnick-Needles syndrome, otopalatodigital syndrome type 2, X-linked Emery-Dreifuss muscular dystrophy