DNHD1
gene geneOn this page
Also known as FLJ32752FLJ46184FLJ35709DKFZp686J0796
Summary
DNHD1 (dynein heavy chain domain 1, HGNC:26532) is a protein-coding gene on chromosome 11p15.4, encoding Dynein heavy chain domain-containing protein 1 (Q96M86). Essential for the normal assembly and function of sperm flagella axonemes.
Predicted to enable dynein intermediate chain binding activity; dynein light intermediate chain binding activity; and minus-end-directed microtubule motor activity. Involved in sperm flagellum assembly. Located in sperm flagellum. Implicated in spermatogenic failure 65.
Source: NCBI Gene 144132 — RefSeq curated summary.
At a glance
- Gene–disease (curated): spermatogenic failure 65 (Strong, GenCC)
- GWAS associations: 4
- Clinical variants (ClinVar): 1,080 total — 21 pathogenic, 26 likely-pathogenic
- Phenotypes (HPO): 18
- MANE Select transcript:
NM_144666
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26532 |
| Approved symbol | DNHD1 |
| Name | dynein heavy chain domain 1 |
| Location | 11p15.4 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ32752, FLJ46184, FLJ35709, DKFZp686J0796 |
| Ensembl gene | ENSG00000179532 |
| Ensembl biotype | protein_coding |
| OMIM | 617277 |
| Entrez | 144132 |
Gene structure
Transcript identifiers
Ensembl transcripts: 18 — 11 retained_intron, 4 protein_coding, 2 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000254579, ENST00000354685, ENST00000472080, ENST00000473019, ENST00000477562, ENST00000524401, ENST00000525080, ENST00000525883, ENST00000526027, ENST00000527143, ENST00000529821, ENST00000530197, ENST00000531903, ENST00000532027, ENST00000532467, ENST00000533635, ENST00000533649, ENST00000534210
RefSeq mRNA: 2 — MANE Select: NM_144666
NM_144666, NM_173589
CCDS: CCDS44532, CCDS7767
Canonical transcript exons
ENST00000254579 — 43 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001129430 | 6544792 | 6547666 |
| ENSE00001318944 | 6533681 | 6534173 |
| ENSE00001407177 | 6508880 | 6509083 |
| ENSE00001416023 | 6497280 | 6497331 |
| ENSE00001416919 | 6566241 | 6566393 |
| ENSE00001428744 | 6548645 | 6548933 |
| ENSE00001605950 | 6497771 | 6498961 |
| ENSE00001611443 | 6558485 | 6558693 |
| ENSE00001627247 | 6563693 | 6564124 |
| ENSE00001656748 | 6528522 | 6528787 |
| ENSE00001685990 | 6548210 | 6548402 |
| ENSE00001714524 | 6547863 | 6548040 |
| ENSE00001721358 | 6556683 | 6558297 |
| ENSE00001753137 | 6519965 | 6520102 |
| ENSE00001788725 | 6528878 | 6529121 |
| ENSE00001801348 | 6558902 | 6559106 |
| ENSE00002187313 | 6520238 | 6520289 |
| ENSE00003474650 | 6570247 | 6570396 |
| ENSE00003486242 | 6570618 | 6571423 |
| ENSE00003493641 | 6566587 | 6566765 |
| ENSE00003512158 | 6509162 | 6509272 |
| ENSE00003524917 | 6539876 | 6540083 |
| ENSE00003528558 | 6566895 | 6567860 |
| ENSE00003530835 | 6562982 | 6563131 |
| ENSE00003533315 | 6565695 | 6565991 |
| ENSE00003556212 | 6511273 | 6511429 |
| ENSE00003580207 | 6564333 | 6564804 |
| ENSE00003580598 | 6519600 | 6519854 |
| ENSE00003584265 | 6533027 | 6533184 |
| ENSE00003586347 | 6544121 | 6544246 |
| ENSE00003590809 | 6568665 | 6568866 |
| ENSE00003593808 | 6497585 | 6497667 |
| ENSE00003601754 | 6502753 | 6502926 |
| ENSE00003604569 | 6563382 | 6563564 |
| ENSE00003605548 | 6559181 | 6559283 |
| ENSE00003616486 | 6539219 | 6539313 |
| ENSE00003617524 | 6538383 | 6538510 |
| ENSE00003630707 | 6568454 | 6568576 |
| ENSE00003638487 | 6570009 | 6570100 |
| ENSE00003657398 | 6538612 | 6538810 |
| ENSE00003660340 | 6544574 | 6544671 |
| ENSE00003674442 | 6571636 | 6572020 |
| ENSE00003684118 | 6568056 | 6568242 |
Expression profiles
Bgee: expression breadth ubiquitous, 178 present calls, max score 94.52.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1789 / max 50.0704, expressed in 74 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 112863 | 0.1290 | 45 |
| 206172 | 0.0499 | 28 |
Top tissues by expression
239 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right testis | UBERON:0004534 | 94.52 | gold quality |
| left testis | UBERON:0004533 | 94.35 | gold quality |
| sural nerve | UBERON:0015488 | 90.24 | gold quality |
| testis | UBERON:0000473 | 90.23 | gold quality |
| right lobe of liver | UBERON:0001114 | 87.71 | gold quality |
| right uterine tube | UBERON:0001302 | 86.87 | gold quality |
| granulocyte | CL:0000094 | 85.28 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 85.19 | gold quality |
| mucosa of stomach | UBERON:0001199 | 84.80 | gold quality |
| bone marrow cell | CL:0002092 | 84.49 | gold quality |
| spleen | UBERON:0002106 | 84.42 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 84.13 | gold quality |
| tibial nerve | UBERON:0001323 | 84.08 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 83.92 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 83.30 | gold quality |
| cerebellar cortex | UBERON:0002129 | 83.12 | gold quality |
| right ovary | UBERON:0002118 | 82.70 | gold quality |
| left uterine tube | UBERON:0001303 | 82.68 | gold quality |
| small intestine | UBERON:0002108 | 82.31 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 82.28 | gold quality |
| apex of heart | UBERON:0002098 | 82.25 | gold quality |
| tibialis anterior | UBERON:0001385 | 82.12 | silver quality |
| right adrenal gland cortex | UBERON:0035827 | 81.96 | gold quality |
| transverse colon | UBERON:0001157 | 81.95 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 81.94 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 81.91 | gold quality |
| body of uterus | UBERON:0009853 | 81.87 | gold quality |
| left ovary | UBERON:0002119 | 81.82 | gold quality |
| right lung | UBERON:0002167 | 81.81 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 81.76 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.55 |
| E-CURD-11 | no | 60.29 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 2)
- Bi-allelic variants in DNHD1 cause flagellar axoneme defects and asthenoteratozoospermia in humans and mice. (PMID:34932939)
- New Mutations in DNHD1 Cause Multiple Morphological Abnormalities of the Sperm Flagella. (PMID:36768883)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | dnhd1 | ENSDARG00000058416 |
| mus_musculus | Dnhd1 | ENSMUSG00000030882 |
| rattus_norvegicus | Dnhd1 | ENSRNOG00000051291 |
Paralogs (15): DNAH9 (ENSG00000007174), DNAH5 (ENSG00000039139), DNAH11 (ENSG00000105877), DNAH1 (ENSG00000114841), DNAH6 (ENSG00000115423), DNAH7 (ENSG00000118997), DNAH8 (ENSG00000124721), DNAH3 (ENSG00000158486), DNAH12 (ENSG00000174844), DNAH2 (ENSG00000183914), DNAH14 (ENSG00000185842), DYNC2H1 (ENSG00000187240), DNAH17 (ENSG00000187775), DYNC1H1 (ENSG00000197102), DNAH10 (ENSG00000197653)
Protein
Protein identifiers
Dynein heavy chain domain-containing protein 1 — Q96M86 (reviewed: Q96M86)
Alternative names: Coiled-coil domain-containing protein 35, Dynein heavy chain domain 1-like protein
All UniProt accessions (5): E9PJT4, E9PM64, Q96M86, J3KTE2, J3QRE5
UniProt curated annotations — full annotation on UniProt →
Function. Essential for the normal assembly and function of sperm flagella axonemes.
Subcellular location. Cell projection. Cilium. Flagellum.
Tissue specificity. Expressed in spermatozoa (at protein level).
Disease relevance. Spermatogenic failure 65 (SPGF65) [MIM:619712] An autosomal recessive male infertility disorder characterized by asthenoteratozoospermia. Progressive sperm motility is severely reduced or absent due to multiple morphologic abnormalities of the flagella. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the dynein heavy chain family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96M86-3 | 1 | yes |
| Q96M86-4 | 2 | |
| Q96M86-5 | 3 |
RefSeq proteins (2): NP_653267, NP_775860 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR004273 | Dhc_D6_P-loop | Domain |
| IPR013602 | Dhc_linker | Domain |
| IPR024317 | Dhc_D4 | Domain |
| IPR024743 | Dynein_HC_stalk | Domain |
| IPR026983 | DHC | Family |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR035699 | Dhc_AAA | Domain |
| IPR041228 | Dhc_C | Domain |
| IPR041466 | Dhc_AAA5_ext | Domain |
| IPR042222 | Dynein_2_N | Homologous_superfamily |
| IPR042228 | Dynein_linker_3 | Homologous_superfamily |
Pfam: PF03028, PF08393, PF12774, PF12775, PF12777, PF12780, PF17852, PF18199
UniProt features (40 total): sequence variant 21, compositionally biased region 5, coiled-coil region 5, region of interest 3, splice variant 3, sequence conflict 2, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
No AlphaFold model available for Q96M86 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 136 (showing top):
MYOGENIN_Q6, WHITEHURST_PACLITAXEL_SENSITIVITY, GCANCTGNY_MYOD_Q6, GOBP_MALE_GAMETE_GENERATION, CAGCTG_AP4_Q5, GOBP_CILIUM_ORGANIZATION, GOBP_CILIUM_MOVEMENT, GOMF_CYTOSKELETAL_MOTOR_ACTIVITY, GOBP_CILIUM_OR_FLAGELLUM_DEPENDENT_CELL_MOTILITY, GOBP_ORGANELLE_ASSEMBLY, GOBP_CELLULAR_PROCESS_INVOLVED_IN_REPRODUCTION_IN_MULTICELLULAR_ORGANISM, GOBP_DEVELOPMENTAL_PROCESS_INVOLVED_IN_REPRODUCTION, GOBP_MOTILE_CILIUM_ASSEMBLY, GOBP_CELL_PROJECTION_ORGANIZATION, AML1_01
GO Biological Process (3): flagellated sperm motility (GO:0030317), sperm flagellum assembly (GO:0120316), microtubule-based movement (GO:0007018)
GO Molecular Function (4): ATP binding (GO:0005524), minus-end-directed microtubule motor activity (GO:0008569), dynein intermediate chain binding (GO:0045505), dynein light intermediate chain binding (GO:0051959)
GO Cellular Component (7): sperm flagellum (GO:0036126), inner dynein arm (GO:0036156), extracellular exosome (GO:0070062), cilium (GO:0005929), dynein complex (GO:0030286), motile cilium (GO:0031514), cell projection (GO:0042995)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein binding | 2 |
| cilium-dependent cell motility | 1 |
| cilium movement involved in cell motility | 1 |
| sperm motility | 1 |
| developmental process involved in reproduction | 1 |
| spermatid development | 1 |
| flagellated sperm motility | 1 |
| motile cilium assembly | 1 |
| microtubule-based process | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| microtubule motor activity | 1 |
| 9+2 motile cilium | 1 |
| axonemal dynein complex | 1 |
| extracellular vesicle | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane bounded cell projection | 1 |
| microtubule associated complex | 1 |
| catalytic complex | 1 |
| cilium | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1228 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DNHD1 | C1orf159 | Q96HA4 | 533 |
| DNHD1 | PTCD2 | Q8WV60 | 490 |
| DNHD1 | ZNHIT2 | Q9UHR6 | 485 |
| DNHD1 | OR1M1 | Q8NGA1 | 474 |
| DNHD1 | FRMD8 | Q9BZ67 | 473 |
| DNHD1 | ZNF106 | Q9H2Y7 | 473 |
| DNHD1 | BOD1L1 | Q8NFC6 | 466 |
| DNHD1 | STARD9 | Q9P2P6 | 462 |
| DNHD1 | FRRS1L | Q9P0K9 | 461 |
| DNHD1 | PRRC1 | Q96M27 | 454 |
| DNHD1 | DDX31 | Q9H8H2 | 447 |
| DNHD1 | KRTAP10-6 | P60371 | 446 |
| DNHD1 | SSH2 | Q76I76 | 444 |
| DNHD1 | KIF18A | Q8NI77 | 443 |
| DNHD1 | DHX29 | Q7Z478 | 439 |
IntAct
8 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| DNHD1 | PDIA6 | psi-mi:“MI:0915”(physical association) | 0.400 |
| DNHD1 | RPL30 | psi-mi:“MI:0915”(physical association) | 0.400 |
| DNHD1 | HSPA5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| DYRK1A | TEX13D | psi-mi:“MI:0914”(association) | 0.350 |
| ATG16L1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| DNHD1 | CETN2 | psi-mi:“MI:0914”(association) | 0.350 |
| NUDCD1 | FUOM | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (20): DNHD1 (Affinity Capture-RNA), DNHD1 (Affinity Capture-RNA), DNHD1 (Affinity Capture-MS), DNHD1 (Affinity Capture-MS), DNHD1 (Proximity Label-MS), DNHD1 (Proximity Label-MS), DNHD1 (Proximity Label-MS), GCKR (Affinity Capture-MS), CETN2 (Affinity Capture-MS), DNHD1 (Reconstituted Complex), DNHD1 (Affinity Capture-MS), DNHD1 (Affinity Capture-MS), KTN1 (Cross-Linking-MS (XL-MS)), DNHD1 (Protein-peptide), DNHD1 (Co-fractionation)
ESM2 similar proteins: A1IGU3, A1IGU4, A1IGU5, A5D8V7, A5PK16, A6QP29, A7E3N7, A8K8P3, A9CB34, B0KWR6, B5DFA1, D3ZI76, G3HQ82, O73770, P0C7M6, P41002, Q14129, Q14DK4, Q15051, Q3SYS7, Q3UK37, Q3UZY0, Q5SNV9, Q5SXM2, Q60953, Q60I26, Q60I27, Q69ZT1, Q6NUI2, Q8BP00, Q8BP86, Q8C1F5, Q8C2K1, Q8CJ00, Q8IV45, Q8NCU4, Q8NE28, Q8NEE8, Q8TE82, Q95KD7
Diamond homologs: D3Z2X2, Q96M86
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
1080 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 21 |
| Likely pathogenic | 26 |
| Uncertain significance | 727 |
| Likely benign | 161 |
| Benign | 71 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1073290 | NC_000011.9:g.(?6559613)(6640631_?)del | Pathogenic |
| 1334452 | NM_144666.3(DNHD1):c.8909A>G (p.Tyr2970Cys) | Pathogenic |
| 1334453 | NM_144666.3(DNHD1):c.522_525del (p.Arg174fs) | Pathogenic |
| 1505775 | NM_144666.3(DNHD1):c.10624C>T (p.Arg3542Ter) | Pathogenic |
| 2044889 | NM_144666.3(DNHD1):c.10078G>T (p.Glu3360Ter) | Pathogenic |
| 2049498 | NM_144666.3(DNHD1):c.2260del (p.Gln754fs) | Pathogenic |
| 2064312 | NM_144666.3(DNHD1):c.3310C>T (p.Gln1104Ter) | Pathogenic |
| 2066214 | NM_144666.3(DNHD1):c.13206del (p.Ala4403fs) | Pathogenic |
| 2070246 | NM_144666.3(DNHD1):c.12489G>A (p.Trp4163Ter) | Pathogenic |
| 2076742 | NM_144666.3(DNHD1):c.3523del (p.His1175fs) | Pathogenic |
| 2082769 | NM_144666.3(DNHD1):c.13492_13493dup (p.Leu4499fs) | Pathogenic |
| 2083867 | NM_144666.3(DNHD1):c.1387C>T (p.Arg463Ter) | Pathogenic |
| 2147164 | NM_144666.3(DNHD1):c.6194del (p.Cys2065fs) | Pathogenic |
| 2158564 | NM_144666.3(DNHD1):c.11370_11371insCTAG (p.Val3791fs) | Pathogenic |
| 2172656 | NM_144666.3(DNHD1):c.2301del (p.Gly768fs) | Pathogenic |
| 2186886 | NM_144666.3(DNHD1):c.13612C>T (p.Arg4538Ter) | Pathogenic |
| 2193620 | NM_144666.3(DNHD1):c.3258C>A (p.Tyr1086Ter) | Pathogenic |
| 2195542 | NM_144666.3(DNHD1):c.9045del (p.Ile3016fs) | Pathogenic |
| 2195675 | NM_144666.3(DNHD1):c.13195G>T (p.Glu4399Ter) | Pathogenic |
| 2196016 | NM_144666.3(DNHD1):c.8104G>T (p.Glu2702Ter) | Pathogenic |
| 2197413 | NM_144666.3(DNHD1):c.13441_13447del (p.Leu4481fs) | Pathogenic |
| 1334449 | NM_144666.3(DNHD1):c.5560C>T (p.Arg1854Cys) | Likely pathogenic |
| 1334454 | NM_144666.3(DNHD1):c.911G>A (p.Arg304Gln) | Likely pathogenic |
| 1693246 | NM_144666.3(DNHD1):c.9649C>T (p.Arg3217Ter) | Likely pathogenic |
| 1693248 | NM_144666.3(DNHD1):c.4141C>T (p.Gln1381Ter) | Likely pathogenic |
| 1693249 | NM_144666.3(DNHD1):c.12453G>A (p.Trp4151Ter) | Likely pathogenic |
| 2042233 | NM_144666.3(DNHD1):c.10757-2A>G | Likely pathogenic |
| 2052956 | NM_144666.3(DNHD1):c.1838-1G>A | Likely pathogenic |
| 2163362 | NM_144666.3(DNHD1):c.12662-2A>C | Likely pathogenic |
| 2169131 | NM_144666.3(DNHD1):c.12864-1G>A | Likely pathogenic |
SpliceAI
8393 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:6502914:GCCG:G | donor_gain | 1.0000 |
| 11:6509050:T:G | donor_gain | 1.0000 |
| 11:6509160:A:AG | acceptor_gain | 1.0000 |
| 11:6509161:G:GG | acceptor_gain | 1.0000 |
| 11:6511425:GACTG:G | donor_gain | 1.0000 |
| 11:6511426:ACTGG:A | donor_loss | 1.0000 |
| 11:6511427:CTGGT:C | donor_loss | 1.0000 |
| 11:6511430:G:GC | donor_loss | 1.0000 |
| 11:6511430:G:GG | donor_gain | 1.0000 |
| 11:6511431:T:G | donor_loss | 1.0000 |
| 11:6519816:G:GT | donor_gain | 1.0000 |
| 11:6519855:G:GG | donor_gain | 1.0000 |
| 11:6528520:A:AG | acceptor_gain | 1.0000 |
| 11:6528521:G:GG | acceptor_gain | 1.0000 |
| 11:6534230:G:GG | donor_gain | 1.0000 |
| 11:6538610:A:AG | acceptor_gain | 1.0000 |
| 11:6538610:AG:A | acceptor_loss | 1.0000 |
| 11:6538611:G:GT | acceptor_gain | 1.0000 |
| 11:6538611:GT:G | acceptor_gain | 1.0000 |
| 11:6538611:GTT:G | acceptor_gain | 1.0000 |
| 11:6538611:GTTC:G | acceptor_gain | 1.0000 |
| 11:6538611:GTTCA:G | acceptor_gain | 1.0000 |
| 11:6538728:G:GT | donor_gain | 1.0000 |
| 11:6538806:GCGTG:G | donor_gain | 1.0000 |
| 11:6538808:GTG:G | donor_gain | 1.0000 |
| 11:6538811:G:GG | donor_gain | 1.0000 |
| 11:6539217:A:AG | acceptor_gain | 1.0000 |
| 11:6539218:G:GG | acceptor_gain | 1.0000 |
| 11:6548371:G:GT | donor_gain | 1.0000 |
| 11:6548725:G:T | donor_gain | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000009798 (11:6545416 C>A), RS1000045798 (11:6553716 G>A), RS1000101238 (11:6517164 T>A), RS1000103635 (11:6548011 C>G), RS1000113842 (11:6505253 T>C), RS1000181846 (11:6551724 C>CGT), RS1000248056 (11:6557978 A>G), RS1000252140 (11:6523424 G>A), RS1000345833 (11:6523711 G>C), RS1000376555 (11:6559602 A>C,T), RS1000424675 (11:6520555 C>G), RS1000469363 (11:6520283 T>C,G), RS1000494723 (11:6500061 T>G), RS1000506532 (11:6543151 G>A), RS1000541990 (11:6550135 T>C,G)
Disease associations
OMIM: gene MIM:617277 | disease phenotypes: MIM:619712, MIM:190300
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| spermatogenic failure 65 | Strong | Autosomal recessive |
Mondo (2): spermatogenic failure 65 (MONDO:0030531), essential tremor (MONDO:0003233)
Orphanet (2): Male infertility with spermatogenesis disorder (Orphanet:399775), NON RARE IN EUROPE: Hereditary essential tremor (Orphanet:862)
HPO phenotypes
18 total (18 of 18 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000027 | Azoospermia |
| HP:0000118 | Phenotypic abnormality |
| HP:0000798 | Oligozoospermia |
| HP:0000837 | Increased circulating gonadotropin level |
| HP:0003251 | Male infertility |
| HP:0008669 | Abnormal spermatogenesis |
| HP:0008734 | Decreased testicular size |
| HP:0011462 | Young adult onset |
| HP:0011961 | Non-obstructive azoospermia |
| HP:0011962 | Obstructive azoospermia |
| HP:0012207 | Reduced sperm motility |
| HP:0012867 | Abnormal sperm mid-piece morphology |
| HP:0032558 | Absent sperm flagella |
| HP:0032559 | Short sperm flagella |
| HP:0032560 | Coiled sperm flagella |
| HP:0033393 | Irregularly shaped sperm tail |
| HP:0034011 | Reduced progressive sperm motility |
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002058_3 | DNA methylation (variation) | 5.000000e-06 |
| GCST010725_20 | Malaria | 4.000000e-69 |
| GCST010725_33 | Malaria | 2.000000e-67 |
| GCST010725_51 | Malaria | 1.000000e-55 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0022599 | DNA methylation |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D020329 | Essential Tremor | C10.228.662.350 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
45 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, decreases expression, increases methylation | 5 |
| bisphenol A | affects cotreatment, affects methylation, decreases methylation, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| 6,7-dimethoxy-2-(pyrrolidin-1-yl)-N-(5-(pyrrolidin-1-yl)pentyl)quinazolin-4-amine | increases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| dicrotophos | increases expression | 1 |
| bufotalin | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| beta-lapachone | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| potassium chromate(VI) | affects cotreatment, increases expression | 1 |
| epigallocatechin gallate | increases expression, affects cotreatment | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| clothianidin | decreases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| bisphenol S | affects cotreatment, decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Fulvestrant | affects cotreatment, affects methylation | 1 |
| Vorinostat | decreases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Dexamethasone | decreases expression, affects cotreatment | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
Clinical trials (associated diseases)
235 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00439699 | PHASE4 | COMPLETED | A Pilot Clinical Trial Of Memantine for Essential Tremor |
| NCT00584376 | PHASE4 | COMPLETED | Pregabalin (Lyrica) for the Treatment of Essential Tremor |
| NCT00998660 | PHASE4 | COMPLETED | RECHARGE Sub-Study to the Implantable Systems Performance Registry (ISPR) |
| NCT02111369 | PHASE4 | COMPLETED | Propranolol and Botulinum Toxin for Essential Vocal Tremor |
| NCT02495883 | PHASE4 | COMPLETED | Functional Imaging of Tremor Circuits and Mechanisms of Treatment Response |
| NCT00018564 | PHASE3 | COMPLETED | Novel Therapies for Essential Tremor |
| NCT00236496 | PHASE3 | COMPLETED | A Comparison of the Efficacy and Safety of Topiramate Versus Placebo in Treating Tremor of Unknown Cause. |
| NCT01441284 | PHASE3 | WITHDRAWN | Efficacy of Pramipexole Extended Release in the Treatment of Essential Tremor |
| NCT04193527 | PHASE3 | COMPLETED | A Study to Evaluate the Diagnostic Efficacy of DaTSCAN™ Ioflupane (123I) Injection in Single Photon Emission Computed Tomography (SPECT) for the Diagnosis of Parkinsonian Syndrome (PS) in Chinese Patients |
| NCT04265209 | PHASE3 | COMPLETED | [18F] LBT-999 PET Compared to [123I]-FP/CIT SPECT to Distinguish Between Parkinson’s Diseases and Essential Tremor |
| NCT06087276 | PHASE3 | ENROLLING_BY_INVITATION | Essential 3 - Decentralized, Phase 3 Study Evaluating the Safety and Efficacy of Ulixacaltamide in Essential Tremor (ET) |
| NCT00080366 | PHASE2 | COMPLETED | Octanol to Treat Essential Tremor |
| NCT00102596 | PHASE2 | COMPLETED | Clinical Trial Characterizing the Bioavailability of 1-Octanol in Adults With Ethanol-responsive Essential Tremor |
| NCT00223743 | PHASE2 | COMPLETED | A Safety/Efficacy Trial of Zonisamide for Essential Tremor |
| NCT00321087 | PHASE2 | TERMINATED | A Study of T2000 in Essential Tremor |
| NCT00598078 | PHASE2 | COMPLETED | Multiple-dose,Double-blind,Placebo-controlled Study of Sodium Oxybate in Patients With Essential Tremor |
| NCT00655278 | PHASE2 | TERMINATED | T2000 in Essential Tremor - Open Label Continuation |
| NCT01332695 | PHASE2 | COMPLETED | A Pilot Efficacy and Safety Study of ST101 in Essential Tremor |
| NCT02277106 | PHASE2 | COMPLETED | Evaluate SAGE-547 in Participants With Essential Tremor |
| NCT02551848 | PHASE2 | UNKNOWN | Kinematic-based BoNT-A Injections for Bilateral ET |
| NCT02668146 | PHASE2 | UNKNOWN | An Efficacy/Safety Study of Perampanel for Reducing Essential Tremor |
| NCT02978781 | PHASE2 | COMPLETED | A Study to Evaluate SAGE-217 in Participants With Essential Tremor |
| NCT03101241 | PHASE2 | COMPLETED | A Phase 2 RCT Study of CX-8998 for Essential Tremor |
| NCT03688685 | PHASE2 | COMPLETED | A Clinical Study to Evaluate CAD-1883 in Essential Tremor |
| NCT03780426 | PHASE2 | COMPLETED | tSMS in Essential Tremor |
| NCT04305275 | PHASE2 | COMPLETED | A Study to Evaluate the Efficacy, Safety, and Tolerability of SAGE-324 in Participants With Essential Tremor |
| NCT04727658 | PHASE2 | TERMINATED | Linac FRACtionated Radiosurgical THALamotomie in Tremors (FRACTHAL) |
| NCT04880616 | PHASE2 | COMPLETED | Safety, Efficacy, and Tolerability of NBI-827104 for the Treatment of Essential Tremor |
| NCT05021978 | PHASE2 | COMPLETED | A Clinical Trial of PRAX-944 in Participants With Essential Tremor |
| NCT05021991 | PHASE2 | COMPLETED | A Clinical Trial of 2 Doses of PRAX-944 in Participants With Essential Tremor |
| NCT05122650 | PHASE2 | COMPLETED | A Study To Assess the Safety and Efficacy of JZP385 in the Treatment of Adults With Moderate to Severe Essential Tremor (ET) |
| NCT05173012 | PHASE2 | COMPLETED | Study to Evaluate SAGE-324 in Participants With Essential Tremor |
| NCT05387642 | PHASE2 | WITHDRAWN | A Clinical Trial of PRAX-114 in Participants With Essential Tremor |
| NCT06312800 | PHASE2 | WITHDRAWN | Acamprosate and Methazolamide for Essential Tremor |
| NCT06821906 | PHASE2 | RECRUITING | Stereotactic Radiosurgery in the Treatment of Essential Tremor |
| NCT07074002 | PHASE2 | RECRUITING | Proof of Concept Study on BP1.4979 Effect on Essential Tremor |
| NCT07103265 | PHASE2 | NOT_YET_RECRUITING | Developing a New LIFU Neuromodulation Method to Suppress Tremor |
| NCT00001986 | PHASE1 | COMPLETED | 1-Octanol to Treat Essential Tremor |
| NCT00016679 | PHASE1 | COMPLETED | 1-Octanol to Treat Essential Tremor |
| NCT01304758 | PHASE1 | COMPLETED | ExAblate Transcranial MR Guided Focused Ultrasound in the Treatment of Essential Tremor |
Related Atlas pages
- Associated diseases: spermatogenic failure 65
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): essential tremor, spermatogenic failure 65