DPH5
geneOn this page
Also known as CGI-30
Summary
DPH5 (diphthamide biosynthesis 5, HGNC:24270) is a protein-coding gene on chromosome 1p21.2, encoding Diphthine methyl ester synthase (Q9H2P9). S-adenosyl-L-methionine-dependent methyltransferase that catalyzes four methylations of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine methyl ester.
This gene encodes a component of the diphthamide synthesis pathway. Diphthamide is a post-translationally modified histidine residue found only on translation elongation factor 2. It is conserved from archaebacteria to humans, and is targeted by diphtheria toxin and Pseudomonas exotoxin A to halt cellular protein synthesis. The yeast and Chinese hamster homologs of this protein catalyze the trimethylation of the histidine residue on elongation factor 2, resulting in a diphthine moiety that is subsequently amidated to yield diphthamide. Multiple transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 51611 — RefSeq curated summary.
At a glance
- Gene–disease (curated): neurodevelopmental disorder with short stature, prominent forehead, and feeding difficulties (Strong, GenCC)
- GWAS associations: 2
- Clinical variants (ClinVar): 49 total — 2 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 51
- MANE Select transcript:
NM_015958
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:24270 |
| Approved symbol | DPH5 |
| Name | diphthamide biosynthesis 5 |
| Location | 1p21.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CGI-30 |
| Ensembl gene | ENSG00000117543 |
| Ensembl biotype | protein_coding |
| OMIM | 611075 |
| Entrez | 51611 |
Gene structure
Transcript identifiers
Ensembl transcripts: 31 — 19 protein_coding, 11 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000342173, ENST00000370105, ENST00000370109, ENST00000427040, ENST00000464270, ENST00000466807, ENST00000476507, ENST00000477293, ENST00000481871, ENST00000481982, ENST00000488176, ENST00000488789, ENST00000490732, ENST00000492067, ENST00000498372, ENST00000690716, ENST00000889720, ENST00000889721, ENST00000889722, ENST00000889723, ENST00000889724, ENST00000889725, ENST00000889726, ENST00000889727, ENST00000934681, ENST00000934682, ENST00000934683, ENST00000934684, ENST00000934685, ENST00000934686, ENST00000950006
RefSeq mRNA: 3 — MANE Select: NM_015958
NM_001077394, NM_001077395, NM_015958
CCDS: CCDS41358, CCDS41359
Canonical transcript exons
ENST00000370109 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001884314 | 101025683 | 101025784 |
| ENSE00003463741 | 100989623 | 100990631 |
| ENSE00003483636 | 101025309 | 101025466 |
| ENSE00003564931 | 100995110 | 100995149 |
| ENSE00003575411 | 101021641 | 101021765 |
| ENSE00003603023 | 101001467 | 101001587 |
| ENSE00003659612 | 101013710 | 101013818 |
| ENSE00003694217 | 100992637 | 100992740 |
Expression profiles
Bgee: expression breadth ubiquitous, 286 present calls, max score 94.96.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 27.9390 / max 823.0704, expressed in 1800 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 13535 | 25.9977 | 1795 |
| 13536 | 1.0130 | 671 |
| 13534 | 0.5552 | 287 |
| 13537 | 0.3319 | 162 |
| 13538 | 0.0411 | 11 |
Top tissues by expression
288 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| body of pancreas | UBERON:0001150 | 94.96 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 94.63 | gold quality |
| left ovary | UBERON:0002119 | 94.42 | gold quality |
| buccal mucosa cell | CL:0002336 | 94.36 | gold quality |
| ovary | UBERON:0000992 | 94.19 | gold quality |
| right adrenal gland | UBERON:0001233 | 93.94 | gold quality |
| ganglionic eminence | UBERON:0004023 | 93.85 | gold quality |
| cortical plate | UBERON:0005343 | 93.74 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 93.73 | gold quality |
| right ovary | UBERON:0002118 | 92.94 | gold quality |
| tibialis anterior | UBERON:0001385 | 92.87 | silver quality |
| ventricular zone | UBERON:0003053 | 92.84 | gold quality |
| left adrenal gland | UBERON:0001234 | 92.58 | gold quality |
| pancreas | UBERON:0001264 | 92.58 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 92.39 | gold quality |
| myocardium | UBERON:0002349 | 92.16 | gold quality |
| adrenal cortex | UBERON:0001235 | 92.15 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 92.08 | gold quality |
| islet of Langerhans | UBERON:0000006 | 91.89 | gold quality |
| adrenal gland | UBERON:0002369 | 91.74 | gold quality |
| stromal cell of endometrium | CL:0002255 | 91.70 | gold quality |
| embryo | UBERON:0000922 | 91.52 | gold quality |
| adrenal tissue | UBERON:0018303 | 91.48 | gold quality |
| upper leg skin | UBERON:0004262 | 91.44 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 91.36 | gold quality |
| mucosa of urinary bladder | UBERON:0001259 | 91.34 | gold quality |
| deltoid | UBERON:0001476 | 91.33 | gold quality |
| heart left ventricle | UBERON:0002084 | 91.25 | gold quality |
| granulocyte | CL:0000094 | 91.22 | gold quality |
| cardiac ventricle | UBERON:0002082 | 91.19 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.32 |
| E-MTAB-6524 | no | 198.12 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
41 targeting DPH5, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-568 | 99.98 | 69.86 | 2084 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-4697-3P | 99.89 | 67.09 | 1123 |
| HSA-MIR-2681-5P | 99.75 | 67.64 | 1655 |
| HSA-MIR-6885-3P | 99.75 | 70.36 | 3187 |
| HSA-MIR-29B-2-5P | 99.67 | 68.98 | 1726 |
| HSA-MIR-4527 | 99.66 | 67.43 | 714 |
| HSA-MIR-6503-5P | 99.62 | 66.96 | 597 |
| HSA-MIR-4743-3P | 99.62 | 68.12 | 2095 |
| HSA-MIR-3682-3P | 99.58 | 67.63 | 865 |
| HSA-MIR-5584-5P | 99.49 | 68.22 | 2814 |
| HSA-MIR-889-5P | 99.41 | 68.75 | 1025 |
| HSA-MIR-135A-5P | 99.36 | 71.85 | 1601 |
| HSA-MIR-135B-5P | 99.36 | 71.63 | 1613 |
| HSA-MIR-4652-3P | 99.33 | 70.02 | 2742 |
| HSA-MIR-4505 | 99.27 | 67.81 | 2678 |
| HSA-MIR-5787 | 99.22 | 67.86 | 2628 |
| HSA-MIR-5587-5P | 99.07 | 68.58 | 838 |
| HSA-MIR-10B-3P | 99.04 | 66.98 | 988 |
| HSA-MIR-9898 | 99.00 | 67.89 | 500 |
| HSA-MIR-4755-3P | 98.77 | 65.59 | 1915 |
Literature-anchored findings (GeneRIF, showing 1)
- The yeast and Chinese hamster homologs of human DPH5 catalyze the trimethylation step in the biosynthesis of diphthamide (PMID:15485916)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | dph5 | ENSDARG00000100242 |
| mus_musculus | Dph5 | ENSMUSG00000033554 |
| rattus_norvegicus | Dph5 | ENSRNOG00000013719 |
| drosophila_melanogaster | Dph5 | FBGN0024558 |
| caenorhabditis_elegans | WBGENE00007194 |
Protein
Protein identifiers
Diphthine methyl ester synthase — Q9H2P9 (reviewed: Q9H2P9)
Alternative names: Diphthamide biosynthesis methyltransferase
All UniProt accessions (2): Q9H2P9, Q96DC6
UniProt curated annotations — full annotation on UniProt →
Function. S-adenosyl-L-methionine-dependent methyltransferase that catalyzes four methylations of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine methyl ester. The four successive methylation reactions represent the second step of diphthamide biosynthesis.
Disease relevance. Neurodevelopmental disorder with short stature, prominent forehead, and feeding difficulties (NEDSFF) [MIM:620070] An autosomal recessive disorder characterized by distinct craniofacial features, multisystem dysfunction, profound neurodevelopmental delays, and neonatal death. The disease is caused by variants affecting the gene represented in this entry.
Pathway. Protein modification; peptidyl-diphthamide biosynthesis.
Similarity. Belongs to the diphthine synthase family.
Isoforms (6)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9H2P9-1 | 1 | yes |
| Q9H2P9-2 | 2 | |
| Q9H2P9-3 | 3 | |
| Q9H2P9-4 | 4 | |
| Q9H2P9-5 | 5 | |
| Q9H2P9-6 | 6 |
RefSeq proteins (3): NP_001070862, NP_001070863, NP_057042* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000878 | 4pyrrol_Mease | Domain |
| IPR004551 | Dphthn_synthase | Family |
| IPR014776 | 4pyrrole_Mease_sub2 | Homologous_superfamily |
| IPR014777 | 4pyrrole_Mease_sub1 | Homologous_superfamily |
| IPR035996 | 4pyrrol_Methylase_sf | Homologous_superfamily |
Pfam: PF00590
Enzyme classification (BRENDA):
- EC 2.1.1.314 — diphthine methyl ester synthase (BRENDA: 5 organisms, 9 substrates, 0 inhibitors, 0 Km, 0 kcat entries)
Catalyzed reactions (Rhea), 1 shown:
- 2-[(3S)-amino-3-carboxypropyl]-L-histidyl-[translation elongation factor 2] + 4 S-adenosyl-L-methionine = diphthine methyl ester-[translation elongation factor 2] + 4 S-adenosyl-L-homocysteine + 3 H(+) (RHEA:42652)
UniProt features (19 total): binding site 7, splice variant 5, sequence variant 3, sequence conflict 2, chain 1, modified residue 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9H2P9-F1 | 92.20 | 0.81 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (7): 9; 84; 87; 112–113; 163; 225; 250
Post-translational modifications (1): 171
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-5358493 | Synthesis of diphthamide-EEF2 |
MSigDB gene sets: 319 (showing top):
CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1, BLALOCK_ALZHEIMERS_DISEASE_UP, OCT1_03, WTGAAAT_UNKNOWN, ZHOU_INFLAMMATORY_RESPONSE_LIVE_DN, DODD_NASOPHARYNGEAL_CARCINOMA_UP, GATA2_01, GRYDER_PAX3FOXO1_ENHANCERS_IN_TADS, ACEVEDO_LIVER_CANCER_UP, GOBP_METHYLATION, IVANOVA_HEMATOPOIESIS_EARLY_PROGENITOR, chr1p21, OSMAN_BLADDER_CANCER_DN, NUYTTEN_EZH2_TARGETS_DN, GRYDER_PAX3FOXO1_TOP_ENHANCERS
GO Biological Process (2): protein histidyl modification to diphthamide (GO:0017183), methylation (GO:0032259)
GO Molecular Function (4): diphthine methyl ester synthase activity (GO:0141133), diphthine synthase activity (GO:0004164), methyltransferase activity (GO:0008168), transferase activity (GO:0016740)
GO Cellular Component (1): cytosol (GO:0005829)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Gamma carboxylation, hypusinylation, hydroxylation, and arylsulfatase activation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein methyltransferase activity | 2 |
| S-adenosylmethionine-dependent methyltransferase activity | 2 |
| peptidyl-histidine modification | 1 |
| metabolic process | 1 |
| transferase activity, transferring one-carbon groups | 1 |
| catalytic activity | 1 |
| cytoplasm | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1548 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DPH5 | DPH2 | Q9BQC3 | 994 |
| DPH5 | DPH1 | Q9BZG8 | 980 |
| DPH5 | EEF2 | P13639 | 930 |
| DPH5 | DPH7 | Q9BTV6 | 874 |
| DPH5 | DPH3 | Q96FX2 | 856 |
| DPH5 | DPH6 | Q7L8W6 | 839 |
| DPH5 | DNAJC24 | Q6P3W2 | 810 |
| DPH5 | RTCA | O00442 | 614 |
| DPH5 | ENOSF1 | Q7L5Y1 | 579 |
| DPH5 | ARMC9 | Q7Z3E5 | 569 |
| DPH5 | ELP5 | Q8TE02 | 551 |
| DPH5 | LRRC39 | Q96DD0 | 537 |
| DPH5 | RIDA | P52758 | 493 |
| DPH5 | MOB3C | Q70IA8 | 493 |
| DPH5 | TMEM14C | Q9P0S9 | 458 |
IntAct
5 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| NHERF1 | psi-mi:“MI:0914”(association) | 0.530 | |
| LRRK2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (34): DPH5 (Affinity Capture-RNA), DPH5 (Affinity Capture-RNA), DPH5 (Affinity Capture-RNA), C12orf10 (Co-fractionation), CD2AP (Co-fractionation), DPH5 (Co-fractionation), DPH5 (Co-fractionation), DPH5 (Co-fractionation), GCLC (Co-fractionation), NMD3 (Co-fractionation), PARVA (Co-fractionation), SPG20 (Co-fractionation), ZYX (Co-fractionation), DPH5 (Synthetic Lethality), DPH5 (Proximity Label-MS)
ESM2 similar proteins: A0A0K9RL25, A0A0U1WZ18, A0A1S4A695, B9N1F9, O15305, O35621, O80840, O88958, O97555, O97556, P21856, P31150, P46926, P50396, P50398, P50399, P60028, P78330, Q16HW7, Q1W374, Q1W375, Q1W376, Q1W377, Q259G4, Q2KHU0, Q3SZJ9, Q3UFY7, Q4R7R3, Q5E982, Q5R8T8, Q5RB83, Q5ZID6, Q5ZKF6, Q60HD6, Q61598, Q64422, Q6AYP7, Q6Q7J2, Q7SYN4, Q7XPW5
Diamond homologs: A0B879, A1RU15, A2SQF6, A3CWF9, A3DLV7, A4FYP1, A4YHI8, A6US81, A6UU49, A6VJP1, A7IA21, A9A6D8, B0R4W9, B1YAU2, B6YXP9, B8GIF8, B9LV13, C3MPQ5, C3MYP9, C3N5D1, C3NDY5, C3NHR8, C4KGZ7, C5A3K4, O27902, O29866, O58456, O74898, O81769, P0CU37, P32469, Q0W085, Q12XB4, Q18JS3, Q2FQ45, Q2NFJ8, Q3IS55, Q467Z4, Q4HZI0, Q58670
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| DPH5 | “down-regulates activity” | EEF2 | methylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
49 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 1 |
| Uncertain significance | 33 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1708533 | NM_015958.3(DPH5):c.619C>T (p.Arg207Ter) | Pathogenic |
| 1708534 | NM_015958.3(DPH5):c.329A>G (p.Asn110Ser) | Pathogenic |
| 4849473 | NM_015958.3(DPH5):c.260+1G>T | Likely pathogenic |
SpliceAI
1371 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:101021634:GACTT:G | donor_loss | 1.0000 |
| 1:101021635:ACTTA:A | donor_loss | 1.0000 |
| 1:101021636:CTTAC:C | donor_loss | 1.0000 |
| 1:101021637:TTA:T | donor_loss | 1.0000 |
| 1:101021638:T:TG | donor_loss | 1.0000 |
| 1:101021640:C:T | donor_loss | 1.0000 |
| 1:101021781:CAA:C | acceptor_gain | 1.0000 |
| 1:101021782:A:T | acceptor_gain | 1.0000 |
| 1:101025316:T:TA | donor_gain | 1.0000 |
| 1:101025321:C:A | donor_gain | 1.0000 |
| 1:100990629:CTG:C | acceptor_gain | 0.9900 |
| 1:100995103:AACT:A | acceptor_loss | 0.9900 |
| 1:100995104:ACTT:A | acceptor_loss | 0.9900 |
| 1:100995105:CTT:C | acceptor_loss | 0.9900 |
| 1:100995106:TTAC:T | acceptor_loss | 0.9900 |
| 1:100995107:TACT:T | acceptor_loss | 0.9900 |
| 1:100995108:A:AC | donor_gain | 0.9900 |
| 1:100995108:ACTT:A | acceptor_loss | 0.9900 |
| 1:100995109:C:CC | donor_gain | 0.9900 |
| 1:100995109:C:T | acceptor_loss | 0.9900 |
| 1:100995146:ATGTC:A | acceptor_loss | 0.9900 |
| 1:100995147:TGT:T | acceptor_gain | 0.9900 |
| 1:100995148:GT:G | acceptor_gain | 0.9900 |
| 1:100995149:TC:T | acceptor_loss | 0.9900 |
| 1:100995150:C:A | acceptor_loss | 0.9900 |
| 1:100995150:C:CC | acceptor_gain | 0.9900 |
| 1:100995151:T:G | acceptor_loss | 0.9900 |
| 1:101001583:TATAA:T | acceptor_gain | 0.9900 |
| 1:101001585:TAA:T | acceptor_gain | 0.9900 |
| 1:101001588:C:CC | acceptor_gain | 0.9900 |
AlphaMissense
1863 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:101001476:A:G | C161R | 0.998 |
| 1:101013741:A:T | I113K | 0.997 |
| 1:101001472:A:G | L162S | 0.996 |
| 1:101025349:T:A | E32V | 0.996 |
| 1:100995149:T:A | D164V | 0.995 |
| 1:101001467:C:G | D164H | 0.995 |
| 1:101013733:C:G | A116P | 0.995 |
| 1:101013745:A:G | S112P | 0.995 |
| 1:101013749:A:C | N110K | 0.995 |
| 1:101013749:A:T | N110K | 0.995 |
| 1:101013808:G:C | H91D | 0.995 |
| 1:100990607:A:T | V220D | 0.994 |
| 1:100992681:A:G | L197P | 0.994 |
| 1:101001562:G:T | S132Y | 0.994 |
| 1:101001574:C:A | G128V | 0.994 |
| 1:101001574:C:T | G128E | 0.994 |
| 1:101013741:A:C | I113R | 0.994 |
| 1:101025427:C:T | G6E | 0.994 |
| 1:101025428:C:A | G6W | 0.994 |
| 1:100995149:T:G | D164A | 0.993 |
| 1:101001562:G:A | S132F | 0.993 |
| 1:101021653:C:T | G83D | 0.993 |
| 1:101021654:C:G | G83R | 0.993 |
| 1:101021662:A:T | L80H | 0.993 |
| 1:101025389:C:G | G19R | 0.993 |
| 1:101025404:C:G | D14H | 0.993 |
| 1:101025428:C:G | G6R | 0.993 |
| 1:101025428:C:T | G6R | 0.993 |
| 1:100990604:C:T | G221D | 0.992 |
| 1:100995148:G:C | D164E | 0.992 |
dbSNP variants (sampled 300 via entrez): RS1000000812 (1:100996675 C>T), RS1000150437 (1:101007620 C>G,T), RS1000181166 (1:101001978 C>T), RS1000399962 (1:101006162 C>T), RS1000440778 (1:100998976 G>A), RS1000444728 (1:101019874 T>C), RS1000471588 (1:100998793 G>T), RS1000507079 (1:101014214 A>G,T), RS1000771063 (1:101005925 G>A,C,T), RS1000777338 (1:101000321 A>C), RS1000808483 (1:101000071 C>T), RS1001105871 (1:101009177 G>C), RS1001148887 (1:101010690 T>C), RS1001281964 (1:100989211 G>A), RS1001341500 (1:100993553 AATATAAATATATATAT>A)
Disease associations
OMIM: gene MIM:611075 | disease phenotypes: MIM:620070
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder with short stature, prominent forehead, and feeding difficulties | Strong | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder with short stature, prominent forehead, and feeding difficulties | Limited | AR |
Mondo (1): neurodevelopmental disorder with short stature, prominent forehead, and feeding difficulties (MONDO:0859295)
Orphanet (0):
HPO phenotypes
51 total (30 of 51 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000020 | Urinary incontinence |
| HP:0000218 | High palate |
| HP:0000286 | Epicanthus |
| HP:0000337 | Broad forehead |
| HP:0000341 | Narrow forehead |
| HP:0000347 | Micrognathia |
| HP:0000348 | High forehead |
| HP:0000431 | Wide nasal bridge |
| HP:0000490 | Deeply set eye |
| HP:0000582 | Upslanted palpebral fissure |
| HP:0000637 | Long palpebral fissure |
| HP:0000653 | Sparse eyelashes |
| HP:0000670 | Carious teeth |
| HP:0001182 | Tapered finger |
| HP:0001252 | Hypotonia |
| HP:0001263 | Global developmental delay |
| HP:0001320 | Cerebellar vermis hypoplasia |
| HP:0001344 | Absent speech |
| HP:0001522 | Death in infancy |
| HP:0001558 | Decreased fetal movement |
| HP:0001561 | Polyhydramnios |
| HP:0001631 | Atrial septal defect |
| HP:0001698 | Pericardial effusion |
| HP:0001763 | Pes planus |
| HP:0001838 | Rocker bottom foot |
| HP:0002020 | Gastroesophageal reflux |
| HP:0002069 | Bilateral tonic-clonic seizure |
| HP:0002187 | Profound intellectual disability |
| HP:0002280 | Enlarged cisterna magna |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001890_9 | QT interval (drug interaction) | 3.000000e-06 |
| GCST006535_2 | Irritable bowel syndrome | 3.000000e-06 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004682 | QT interval |
| EFO:0007916 | response to tricyclic antidepressant |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
30 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, affects cotreatment, increases abundance, increases expression | 3 |
| Valproic Acid | decreases expression, increases expression, affects expression | 3 |
| Tretinoin | decreases expression | 2 |
| Cadmium Chloride | decreases expression | 2 |
| dicrotophos | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| bisphenol A | increases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| JP8 aviation fuel | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Air Pollutants | affects expression, increases abundance | 1 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 1 |
| Manganese | increases expression, affects cotreatment, increases abundance | 1 |
| Ozone | affects expression, increases abundance | 1 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 1 |
| Thiram | decreases expression | 1 |
| Tobacco Smoke Pollution | increases methylation | 1 |
| Tunicamycin | increases expression | 1 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | decreases expression | 1 |
| Cyclosporine | increases expression | 1 |
| Antirheumatic Agents | increases expression | 1 |
| Thapsigargin | increases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: neurodevelopmental disorder with short stature, prominent forehead, and feeding difficulties
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): irritable bowel syndrome, neurodevelopmental disorder with short stature, prominent forehead, and feeding difficulties