DPPA4
gene geneOn this page
Also known as FLJ10713
Summary
DPPA4 (developmental pluripotency associated 4, HGNC:19200) is a protein-coding gene on chromosome 3q13.13, encoding Developmental pluripotency-associated protein 4 (Q7L190). May be involved in the maintenance of active epigenetic status of target genes.
This gene encodes a nuclear factor that is involved in the maintenance of pluripotency in stem cells and essential for embryogenesis. The encoded protein has a scaffold-attachment factor A/B, acinus and PIAS (SAP) domain that binds DNA and is thought to modify chromatin. Mice with a homozygous knockout of the orthologous gene die during late embryonic development or within hours after birth. Knockout embryos are normal in size at embryonic day 18.5 but exhibit skeletal and lung tissue abnormalities. This gene, when mutated, is highly expressed in embryonal carcinomas, pluripotent germ cell tumors, and other cancers and is thought to play an important role in tumor progression. Multiple pseudogenes of this gene have been identified. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 55211 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 26 total
- MANE Select transcript:
NM_018189
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:19200 |
| Approved symbol | DPPA4 |
| Name | developmental pluripotency associated 4 |
| Location | 3q13.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ10713 |
| Ensembl gene | ENSG00000121570 |
| Ensembl biotype | protein_coding |
| OMIM | 614125 |
| Entrez | 55211 |
Gene structure
Transcript identifiers
Ensembl transcripts: 13 — 7 protein_coding, 3 retained_intron, 2 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000335658, ENST00000463966, ENST00000475135, ENST00000477303, ENST00000478791, ENST00000487299, ENST00000489281, ENST00000495679, ENST00000936552, ENST00000936553, ENST00000936554, ENST00000936555, ENST00000936556
RefSeq mRNA: 3 — MANE Select: NM_018189
NM_001348928, NM_001348929, NM_018189
CCDS: CCDS33814
Canonical transcript exons
ENST00000335658 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001338478 | 109326144 | 109328024 |
| ENSE00001338483 | 109337464 | 109337546 |
| ENSE00003507744 | 109333870 | 109333993 |
| ENSE00003533320 | 109331871 | 109332031 |
| ENSE00003543988 | 109330524 | 109330812 |
| ENSE00003689009 | 109328890 | 109329088 |
| ENSE00003693234 | 109331734 | 109331784 |
Expression profiles
Bgee: expression breadth ubiquitous, 150 present calls, max score 89.00.
FANTOM5 (CAGE): breadth broad, TPM avg 16.5179 / max 971.3744, expressed in 280 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 43700 | 14.8029 | 268 |
| 43701 | 1.1047 | 188 |
| 43702 | 0.3523 | 59 |
| 43698 | 0.1917 | 70 |
| 43697 | 0.0663 | 35 |
Top tissues by expression
272 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 89.00 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 86.91 | gold quality |
| buccal mucosa cell | CL:0002336 | 84.54 | gold quality |
| sural nerve | UBERON:0015488 | 70.95 | gold quality |
| adrenal tissue | UBERON:0018303 | 70.79 | gold quality |
| thymus | UBERON:0002370 | 68.53 | silver quality |
| monocyte | CL:0000576 | 68.50 | gold quality |
| leukocyte | CL:0000738 | 68.34 | gold quality |
| mononuclear cell | CL:0000842 | 68.32 | gold quality |
| testis | UBERON:0000473 | 67.90 | gold quality |
| bone marrow | UBERON:0002371 | 65.86 | gold quality |
| right testis | UBERON:0004534 | 65.78 | gold quality |
| left testis | UBERON:0004533 | 64.50 | gold quality |
| ventricular zone | UBERON:0003053 | 64.32 | gold quality |
| bone marrow cell | CL:0002092 | 63.79 | gold quality |
| placenta | UBERON:0001987 | 61.65 | gold quality |
| ganglionic eminence | UBERON:0004023 | 59.59 | gold quality |
| lymph node | UBERON:0000029 | 59.37 | gold quality |
| granulocyte | CL:0000094 | 58.77 | gold quality |
| adenohypophysis | UBERON:0002196 | 58.72 | gold quality |
| embryo | UBERON:0000922 | 58.63 | gold quality |
| right lobe of liver | UBERON:0001114 | 58.46 | gold quality |
| stromal cell of endometrium | CL:0002255 | 56.72 | gold quality |
| calcaneal tendon | UBERON:0003701 | 56.37 | gold quality |
| pituitary gland | UBERON:0000007 | 56.19 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 55.50 | silver quality |
| hindlimb stylopod muscle | UBERON:0004252 | 54.95 | gold quality |
| liver | UBERON:0002107 | 54.90 | gold quality |
| gall bladder | UBERON:0002110 | 54.60 | gold quality |
| cerebellar vermis | UBERON:0004720 | 54.47 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-11121 | yes | 201.54 |
| E-MTAB-9388 | yes | 14.63 |
| E-ANND-3 | yes | 9.66 |
| E-MTAB-7008 | no | 851.71 |
| E-MTAB-5061 | no | 2.71 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): DLX5, EOMES, FOXC1, GATA6, HLX, ID2, NANOG, POU5F1, SOX2, TBX18, TBXT, ZFP42
miRNA regulators (miRDB)
70 targeting DPPA4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-6740-5P | 100.00 | 65.64 | 932 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-3529-3P | 99.90 | 73.55 | 3045 |
| HSA-MIR-4496 | 99.88 | 68.89 | 2236 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-3133 | 99.81 | 70.92 | 3506 |
| HSA-MIR-1825 | 99.72 | 68.11 | 1089 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-466 | 99.67 | 70.85 | 2863 |
| HSA-MIR-3175 | 99.65 | 66.30 | 2031 |
| HSA-MIR-4261 | 99.59 | 70.30 | 3415 |
Literature-anchored findings (GeneRIF, showing 9)
- Thsi study identifies DPPA4 and other genes as putative Sox2:Oct-3/4 target genes using a combination of in silico analysis and transcription-based assays. (PMID:18366076)
- Results identified a new family of pluripotency-related oncogenes consisting of DPPA2 and DPPA4. (PMID:23963736)
- knockdown of PCGF1 results in reduced expression of DPPA4 and other subunits of the variant PRC1 complex at both mRNA and protein levels (PMID:26687479)
- identifies EBP1 as a novel pluripotency cofactor and provides insight into potential mechanisms used by DPPA4 in regulating pluripotency through its association with EBP1 (PMID:29327467)
- Across cell types Dppa4 shows a preference for binding to regions with active chromatin signatures, and can influence chromatin modifications at target genes. Data provide novel insights into Dppa4 function in both pluripotent and oncogenic contexts. (PMID:30031967)
- Dppa4 promotes nonsmallcell lung cancer progression, partly through glycolysis by lactate dehydrogenase B. (PMID:31180527)
- Dppa2/4 as a trigger of signaling pathways to promote zygote genome activation by binding to CG-rich region. (PMID:33316032)
- Dynamic cytosolic foci of DPPA4 in human pluripotent stem cells. (PMID:36007377)
- Chromatin modifier developmental pluripotency associated factor 4 (DPPA4) is a candidate gene for alcohol-induced developmental disorders. (PMID:36581877)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Dppa4 | ENSMUSG00000058550 |
| rattus_norvegicus | Dppa4 | ENSRNOG00000025404 |
Paralogs (1): DPPA2 (ENSG00000163530)
Protein
Protein identifiers
Developmental pluripotency-associated protein 4 — Q7L190 (reviewed: Q7L190)
All UniProt accessions (3): C9J7A7, Q7L190, F8WDC6
UniProt curated annotations — full annotation on UniProt →
Function. May be involved in the maintenance of active epigenetic status of target genes. May inhibit differentiation of embryonic cells into a primitive ectoderm lineage.
Subunit / interactions. Interacts with DPPA2. Interacts with PCGF1.
Subcellular location. Nucleus.
RefSeq proteins (3): NP_001335857, NP_001335858, NP_060659* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR025891 | Dppa2/4_C_dom | Domain |
| IPR025892 | Dppa2/4_central_dom | Domain |
| IPR039590 | Dppa2/4 | Family |
Pfam: PF14047, PF14049
UniProt features (10 total): modified residue 3, region of interest 2, compositionally biased region 2, sequence variant 2, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q7L190-F1 | 66.05 | 0.20 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 215, 221, 226
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-2892247 | POU5F1 (OCT4), SOX2, NANOG activate genes related to proliferation |
| R-HSA-9819196 | Zygotic genome activation (ZGA) |
MSigDB gene sets: 81 (showing top):
BENPORATH_NOS_TARGETS, RYTTCCTG_ETS2_B, GOBP_MESENCHYME_DEVELOPMENT, GOBP_RESPIRATORY_SYSTEM_DEVELOPMENT, JAATINEN_HEMATOPOIETIC_STEM_CELL_UP, CONRAD_STEM_CELL, RASHI_RESPONSE_TO_IONIZING_RADIATION_5, SHEN_SMARCA2_TARGETS_DN, GOMF_CHROMATIN_BINDING, BENPORATH_OCT4_TARGETS, ETS_Q4, CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN, BENPORATH_ES_1, KORKOLA_EMBRYONAL_CARCINOMA, MIKKELSEN_ES_ICP_WITH_H3K4ME3
GO Biological Process (2): system development (GO:0048731), lung-associated mesenchyme development (GO:0060484)
GO Molecular Function (2): chromatin binding (GO:0003682), protein binding (GO:0005515)
GO Cellular Component (2): nucleus (GO:0005634), nucleoplasm (GO:0005654)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Transcriptional regulation of pluripotent stem cells | 1 |
| Maternal to zygotic transition (MZT) | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| binding | 2 |
| multicellular organism development | 1 |
| anatomical structure development | 1 |
| lung development | 1 |
| mesenchyme development | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1124 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DPPA4 | GDF3 | Q9NR23 | 672 |
| DPPA4 | NANOG | Q9H9S0 | 663 |
| DPPA4 | POU5F1 | P31359 | 636 |
| DPPA4 | UTF1 | Q5T230 | 632 |
| DPPA4 | ZFP42 | Q96MM3 | 626 |
| DPPA4 | DPPA3 | Q6W0C5 | 611 |
| DPPA4 | SALL4 | Q9UJQ4 | 605 |
| DPPA4 | SOX2 | P48431 | 603 |
| DPPA4 | DPPA5 | A6NC42 | 603 |
| DPPA4 | LIN28A | Q9H9Z2 | 590 |
| DPPA4 | ZSCAN4 | Q8NAM6 | 571 |
| DPPA4 | ESRRB | O95718 | 570 |
| DPPA4 | CRIPTO | P13385 | 546 |
| DPPA4 | PRDM14 | Q9GZV8 | 540 |
| DPPA4 | H3-3A | P06351 | 508 |
IntAct
116 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MMS19 | CIAO1 | psi-mi:“MI:0914”(association) | 0.910 |
| DPPA4 | SH3GL1 | psi-mi:“MI:0915”(physical association) | 0.900 |
| SH3GL1 | DPPA4 | psi-mi:“MI:0915”(physical association) | 0.900 |
| DPPA4 | LDOC1 | psi-mi:“MI:0915”(physical association) | 0.780 |
| LDOC1 | DPPA4 | psi-mi:“MI:0915”(physical association) | 0.780 |
| CRK | DPPA4 | psi-mi:“MI:0915”(physical association) | 0.670 |
| PSH1 | DPPA4 | psi-mi:“MI:0915”(physical association) | 0.610 |
| DPPA4 | PSH1 | psi-mi:“MI:0915”(physical association) | 0.610 |
| DPPA4 | GRB2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DPPA4 | EIF4A2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DPPA4 | SH3GL1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RPGRIP1 | DPPA4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GRB2 | DPPA4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EIF4A2 | DPPA4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DPPA4 | RPGRIP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (185): DPPA4 (Two-hybrid), DPPA4 (Two-hybrid), DPPA4 (Two-hybrid), DPPA4 (Two-hybrid), RPGRIP1 (Two-hybrid), ADD2 (Affinity Capture-MS), ADD1 (Affinity Capture-MS), HAL (Affinity Capture-MS), TGM1 (Affinity Capture-MS), SNX9 (Affinity Capture-MS), SH3GL1 (Affinity Capture-MS), L3MBTL3 (Affinity Capture-MS), CLU (Affinity Capture-MS), APOD (Affinity Capture-MS), SDR9C7 (Affinity Capture-MS)
ESM2 similar proteins: A2A3V1, A2A995, A5D7J3, B1AX39, O15446, O60303, O88573, P0DPK0, P23497, Q14684, Q1ED39, Q2KIN0, Q3KRF1, Q3TFK5, Q3UY34, Q4R2Z8, Q566R3, Q58CQ0, Q5I034, Q5PQK4, Q5PQN4, Q5SU73, Q5XG69, Q66H19, Q66LM6, Q68A65, Q6IR42, Q6NTE8, Q6P1D7, Q6P9P0, Q76KJ5, Q7L190, Q80YR5, Q8BI29, Q8BVK9, Q8C0X0, Q8C753, Q8IY92, Q8IYF1, Q8K4R9
Diamond homologs: D3Z8Y2, Q7L190, Q7Z7J5, Q8CCG4, Q9CWH0
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| POU5F1 | “up-regulates quantity by expression” | DPPA4 | “transcriptional regulation” |
| SOX2/POU5F1 | “up-regulates quantity by expression” | DPPA4 | “transcriptional regulation” |
| SOX17/POU5F1 | “up-regulates quantity by expression” | DPPA4 | “transcriptional regulation” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 43 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Clathrin-mediated endocytosis | 5 | 14.2× | 1e-03 |
| Membrane Trafficking | 6 | 7.4× | 3e-03 |
| Vesicle-mediated transport | 6 | 7.0× | 4e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
26 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 23 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
892 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:109331785:C:CC | acceptor_gain | 1.0000 |
| 3:109331888:G:C | donor_gain | 1.0000 |
| 3:109332030:CA:C | acceptor_gain | 1.0000 |
| 3:109332032:C:CC | acceptor_gain | 1.0000 |
| 3:109332038:C:CT | acceptor_gain | 1.0000 |
| 3:109332039:A:T | acceptor_gain | 1.0000 |
| 3:109333990:TCCA:T | acceptor_gain | 1.0000 |
| 3:109333991:CCA:C | acceptor_gain | 1.0000 |
| 3:109333991:CCAC:C | acceptor_gain | 1.0000 |
| 3:109333992:CA:C | acceptor_gain | 1.0000 |
| 3:109333992:CAC:C | acceptor_gain | 1.0000 |
| 3:109333994:C:CC | acceptor_gain | 1.0000 |
| 3:109337462:ACCT:A | donor_gain | 1.0000 |
| 3:109337463:CCTC:C | donor_gain | 1.0000 |
| 3:109337465:T:TA | donor_gain | 1.0000 |
| 3:109330518:GCTTA:G | donor_loss | 0.9900 |
| 3:109330519:CTTA:C | donor_loss | 0.9900 |
| 3:109330520:TTACC:T | donor_loss | 0.9900 |
| 3:109330521:TACC:T | donor_loss | 0.9900 |
| 3:109330522:A:C | donor_loss | 0.9900 |
| 3:109330523:C:CA | donor_loss | 0.9900 |
| 3:109330811:TC:T | acceptor_gain | 0.9900 |
| 3:109330811:TCCTA:T | acceptor_loss | 0.9900 |
| 3:109330812:CC:C | acceptor_gain | 0.9900 |
| 3:109330814:T:C | acceptor_loss | 0.9900 |
| 3:109331782:TTT:T | acceptor_gain | 0.9900 |
| 3:109331783:TTCT:T | acceptor_loss | 0.9900 |
| 3:109331784:TCTAA:T | acceptor_loss | 0.9900 |
| 3:109331785:CTA:C | acceptor_loss | 0.9900 |
| 3:109331786:T:C | acceptor_loss | 0.9900 |
AlphaMissense
1974 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:109328911:A:G | L286S | 0.999 |
| 3:109328909:A:G | C287R | 0.998 |
| 3:109329080:A:G | W230R | 0.998 |
| 3:109329080:A:T | W230R | 0.998 |
| 3:109331906:A:G | W102R | 0.998 |
| 3:109331906:A:T | W102R | 0.998 |
| 3:109328911:A:C | L286W | 0.997 |
| 3:109329002:A:G | W256R | 0.997 |
| 3:109329002:A:T | W256R | 0.997 |
| 3:109328900:A:G | C290R | 0.996 |
| 3:109329064:C:A | G235V | 0.996 |
| 3:109328921:C:G | D283H | 0.995 |
| 3:109329000:C:A | W256C | 0.995 |
| 3:109329000:C:G | W256C | 0.995 |
| 3:109329035:A:G | W245R | 0.995 |
| 3:109329035:A:T | W245R | 0.995 |
| 3:109329065:C:A | G235W | 0.995 |
| 3:109329070:A:T | V233D | 0.995 |
| 3:109329078:C:A | W230C | 0.995 |
| 3:109329078:C:G | W230C | 0.995 |
| 3:109331772:A:C | Y118D | 0.995 |
| 3:109331904:C:A | W102C | 0.995 |
| 3:109331904:C:G | W102C | 0.995 |
| 3:109328907:G:C | C287W | 0.994 |
| 3:109328920:T:A | D283V | 0.994 |
| 3:109331901:G:C | C103W | 0.994 |
| 3:109328021:G:C | N294K | 0.993 |
| 3:109328021:G:T | N294K | 0.993 |
| 3:109328899:C:G | C290S | 0.993 |
| 3:109328900:A:T | C290S | 0.993 |
dbSNP variants (sampled 300 via entrez): RS1000008328 (3:109337546 T>C,G), RS1000061277 (3:109334647 G>A), RS1000439897 (3:109328880 A>G), RS1001133949 (3:109326923 T>C), RS1001240269 (3:109334375 C>T), RS1001445453 (3:109340152 G>T), RS1001471912 (3:109333736 G>A,C,T), RS1002411083 (3:109335955 C>G), RS1002738522 (3:109335407 C>A,G,T), RS1002853705 (3:109327259 A>G), RS1003078366 (3:109333377 A>C), RS1003183774 (3:109328467 C>T), RS1003816758 (3:109332430 C>T), RS1003823046 (3:109334676 A>C), RS1003932709 (3:109326833 G>A)
Disease associations
OMIM: gene MIM:614125 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): prostate cancer (MONDO:0008315)
Orphanet (1): Familial prostate cancer (Orphanet:1331)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000960_5 | Cardiac hypertrophy | 3.000000e-06 |
| GCST002064_7 | Corneal astigmatism | 2.000000e-06 |
| GCST009391_1785 | Metabolite levels | 3.000000e-06 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0002503 | cardiac hypertrophy |
| EFO:0004468 | glucose measurement |
| EFO:0010477 | fructose measurement |
| EFO:0010481 | galactose measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
14 total (human), top 14 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, affects expression | 5 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | decreases expression, affects cotreatment | 2 |
| Phenylmercuric Acetate | decreases expression, affects cotreatment | 2 |
| methylmercuric chloride | decreases expression | 1 |
| bisphenol A | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| LDN 193189 | affects cotreatment, decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Butyrates | increases expression | 1 |
| Carbamazepine | affects expression | 1 |
| Diethylhexyl Phthalate | decreases expression, increases expression | 1 |
| Lead | affects expression | 1 |
| Tretinoin | decreases expression | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | PHASE4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | PHASE4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | PHASE4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | PHASE4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | PHASE4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | PHASE4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | PHASE4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | PHASE4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | PHASE4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
| NCT00242554 | PHASE4 | COMPLETED | Open-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases |
| NCT00280098 | PHASE4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | PHASE4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | PHASE4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | PHASE4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | PHASE4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
| NCT00422708 | PHASE4 | COMPLETED | Local Anesthesia for Prostate Biopsy |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00590213 | PHASE4 | COMPLETED | Compare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX |
| NCT00629330 | PHASE4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | PHASE4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | PHASE4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | PHASE4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
| NCT00906269 | PHASE4 | UNKNOWN | Can Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer |
| NCT00953277 | PHASE4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | PHASE4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | PHASE4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | PHASE4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | PHASE4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | PHASE4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | PHASE4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | PHASE4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | PHASE4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | PHASE4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
| NCT01511874 | PHASE4 | COMPLETED | Efficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer |
| NCT01512472 | PHASE4 | TERMINATED | Firmagon (Degarelix) Intermittent Therapy |
| NCT01547416 | PHASE4 | COMPLETED | The Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function |
| NCT01571544 | PHASE4 | COMPLETED | The Use of Thermal Suits as Preventing Hypothermia During Surgery |
| NCT01581749 | PHASE4 | UNKNOWN | Evaluation of Truebeam for Low-Intermediate Risk Prostate Cancer |
| NCT01649635 | PHASE4 | COMPLETED | Study of Cabazitaxel Combined With Prednisone and Prophylaxis of Neutropenia Complications in the Treatment of Patients With Metastatic Castration-resistant Prostate Cancer |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.