DRAM1
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Also known as FLJ11259DRAM
Summary
DRAM1 (DNA damage regulated autophagy modulator 1, HGNC:25645) is a protein-coding gene on chromosome 12q23.2, encoding DNA damage-regulated autophagy modulator protein 1 (Q8N682). Lysosomal modulator of autophagy that plays a central role in p53/TP53-mediated apoptosis.
This gene is regulated as part of the p53 tumor suppressor pathway. The gene encodes a lysosomal membrane protein that is required for the induction of autophagy by the pathway. Decreased transcriptional expression of this gene is associated with various tumors. This gene has a pseudogene on chromosome 4.
Source: NCBI Gene 55332 — RefSeq curated summary.
At a glance
- GWAS associations: 10
- Clinical variants (ClinVar): 36 total
- MANE Select transcript:
NM_018370
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25645 |
| Approved symbol | DRAM1 |
| Name | DNA damage regulated autophagy modulator 1 |
| Location | 12q23.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ11259, DRAM |
| Ensembl gene | ENSG00000136048 |
| Ensembl biotype | protein_coding |
| OMIM | 610776 |
| Entrez | 55332 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 8 protein_coding, 2 retained_intron, 2 nonsense_mediated_decay
ENST00000258534, ENST00000544152, ENST00000546729, ENST00000549066, ENST00000549365, ENST00000551403, ENST00000614926, ENST00000858773, ENST00000858774, ENST00000858775, ENST00000963725, ENST00000963726
RefSeq mRNA: 1 — MANE Select: NM_018370
NM_018370
CCDS: CCDS41823
Canonical transcript exons
ENST00000258534 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000922844 | 101908186 | 101908363 |
| ENSE00001103640 | 101921216 | 101923612 |
| ENSE00001250883 | 101877580 | 101877920 |
| ENSE00003514426 | 101897863 | 101897930 |
| ENSE00003607345 | 101920109 | 101920201 |
| ENSE00003680494 | 101914174 | 101914232 |
| ENSE00003684161 | 101901291 | 101901433 |
Expression profiles
Bgee: expression breadth ubiquitous, 235 present calls, max score 96.67.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 55.0810 / max 950.0196, expressed in 1762 samples.
FANTOM5 promoters (12 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 127666 | 22.3393 | 1546 |
| 127665 | 9.8904 | 1408 |
| 127664 | 9.2140 | 1569 |
| 127658 | 3.9082 | 722 |
| 127667 | 3.2671 | 846 |
| 127660 | 1.6983 | 514 |
| 127661 | 1.6549 | 437 |
| 127662 | 1.1811 | 418 |
| 127663 | 0.6921 | 257 |
| 206865 | 0.5810 | 304 |
Top tissues by expression
271 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lower lobe of lung | UBERON:0008949 | 96.67 | gold quality |
| upper lobe of lung | UBERON:0008948 | 94.31 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 94.10 | gold quality |
| stromal cell of endometrium | CL:0002255 | 93.74 | gold quality |
| lung | UBERON:0002048 | 93.50 | gold quality |
| right lung | UBERON:0002167 | 92.58 | gold quality |
| decidua | UBERON:0002450 | 91.44 | gold quality |
| monocyte | CL:0000576 | 90.74 | gold quality |
| visceral pleura | UBERON:0002401 | 90.70 | gold quality |
| mononuclear cell | CL:0000842 | 90.37 | gold quality |
| leukocyte | CL:0000738 | 90.11 | gold quality |
| metanephros cortex | UBERON:0010533 | 89.48 | gold quality |
| vermiform appendix | UBERON:0001154 | 88.33 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 87.98 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 87.62 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 87.58 | gold quality |
| left adrenal gland | UBERON:0001234 | 87.40 | gold quality |
| omental fat pad | UBERON:0010414 | 87.29 | gold quality |
| peritoneum | UBERON:0002358 | 87.24 | gold quality |
| gall bladder | UBERON:0002110 | 87.18 | gold quality |
| right adrenal gland | UBERON:0001233 | 87.01 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 86.81 | gold quality |
| pleura | UBERON:0000977 | 86.50 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 86.38 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 86.33 | gold quality |
| body of stomach | UBERON:0001161 | 86.21 | gold quality |
| adrenal gland | UBERON:0002369 | 86.05 | gold quality |
| mucosa of stomach | UBERON:0001199 | 85.89 | gold quality |
| calcaneal tendon | UBERON:0003701 | 85.82 | gold quality |
| pancreatic ductal cell | CL:0002079 | 85.69 | silver quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-1 | yes | 84.94 |
| E-ANND-3 | yes | 25.90 |
| E-GEOD-130148 | yes | 13.30 |
| E-MTAB-10290 | no | 130.76 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): E2F1, TP53
miRNA regulators (miRDB)
108 targeting DRAM1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5193 | 100.00 | 67.26 | 1744 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-433-3P | 99.98 | 69.37 | 1203 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-4778-3P | 99.93 | 70.40 | 1818 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-4753-3P | 99.90 | 71.03 | 3786 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-424-5P | 99.89 | 71.90 | 2641 |
| HSA-MIR-6838-5P | 99.89 | 71.94 | 2690 |
| HSA-MIR-579-3P | 99.86 | 71.66 | 3628 |
Literature-anchored findings (GeneRIF, showing 29)
- Collectively therefore, these studies not only report a stress-induced regulator of autophagy but also highlight the relationship of DRAM and autophagy to p53 function and damage-induced programmed cell death. (PMID:16839881)
- DRAM links autophagy to p53 and programmed cell death. (PMID:17102582)
- identified FLJ11259/DRAM as a p53-inducible member of a novel family of transmembrane proteins. FLJ11259/DRAM may be an important modulator of p53 responses in diverse tumor types. (PMID:17397945)
- DRAM is activated by p53 which is required for the ability of p53 to induce autophagy and is also critical for the ability of p53 to induce programmed cell death. (PMID:19556885)
- c-Jun NH2-terminal kinase as a novel mediator of DRAM protein regulation in Ewing sarcoma cells (PMID:19706754)
- Overexpression of DRAM induces VRK1 downregulation and the opposite effect was observed by its knockdown. (PMID:21386980)
- DRAM-1 encodes not just one mRNA, but a series of p53-inducible splice variants which are expressed at varying levels in multiple human and mouse cell lines. (PMID:22082963)
- these findings shed new light on the role of autophagy in GBM and reveal a novel function of the autophagy regulators DRAM1 and p62 in control of migration/invasion in cancer stem cells. (PMID:22525272)
- p73-regulated DRAM-1 is functionally involved in neutrophil differentiation of acute promyelocytic leukemia cells. (PMID:22981223)
- Overexpression of miR-199a-5p inhibits DRAM1 and Beclin1 expression. (PMID:23337876)
- DRAM triggers lysosomal membrane permeabilization and cell death in CD4(+) T cells infected with HIV. (PMID:23658518)
- DRAM1 affects autophagy through lysosomal acidification, fusion of lysosomes with autophagosomes and clearance of autophagosomes. (PMID:23696801)
- DRAM gene expression is down regulated by oxidative stress through the mediation of reactive oxygen species (PMID:23832602)
- DRAM is an important gene for the enhancement of p53-dependent apoptosis. (PMID:24133622)
- Suggest that promoting DRAM-mediated autophagy together with PI3K/AKT inhibition might be more effective for autophagy-based therapy in hepatoma. (PMID:24556693)
- DRAM1 mediates autophagic defense against a broader range of intracellular pathogens, since DRAM1 expression was also induced by the common bacterial endotoxin lipopolysaccharide. (PMID:24922577)
- DRAM1 regulates apoptosis by inhibiting BAX degradation. (PMID:25633293)
- Altogether, these findings suggest that in normal/high glucose condition a mutual unbalance between p53-dependent apoptosis (PUMA) and autophagy (DRAM) gene occurred, modifying the ADR-induced cancer cell death in HG both in vitro and in vivo. (PMID:28893313)
- Overexpression of full-length AIFM1 suppresses proliferation and induces apoptosis of HepG2 and Hep3B cells. Caspase 3 and DRAM are involved in full-length AIFM1-induced apoptosis in HepG2 and Hep3B cells. (PMID:29501488)
- Our results indicated that DRAM1 protected cardiomyocytes from ischemia stress-induced autophagy flux obstacle and uncovered a novel DRAM1-Atg7-Atg12/Atg5 autophagy flux regulation pathway under conditions of myocardial ischemic stress. (PMID:30144448)
- The expression of serum DRAM1 messenger RNA (mRNA), ARSA mRNA, hsa-miR-2053 and lncRNA-RP1-86D1.3 were positive in 78.3%, 90%, 85%, and 83.3% of MPM patients, respectively. (PMID:30362153)
- these results identify that the class I PI3K-Akt-rpS6 pathway is regulated by DRAM1 and may provide new insight into the potential role of DRAM1 in human cancers. (PMID:30902093)
- DRAM1 deficiency affects the organization and function of the Golgi apparatus. (PMID:31356858)
- DRAM-1 binds the membrane carrier protein SCAMP3 and the amino acid transporters SLC1A5 and LAT1, directing them to lysosomes and permitting efficient mTORC1 activation. (PMID:31492633)
- DRAM1 plays a tumor suppressor role in NSCLC cells by promoting lysosomal degradation of EGFR. (PMID:32943616)
- DNA Damage-Regulated Autophagy Modulator 1 (DRAM1) Mediates Autophagy and Apoptosis of Intestinal Epithelial Cells in Inflammatory Bowel Disease. (PMID:33184797)
- DRAM1 plays a tumor suppressor role in clear cell renal cell carcinoma through modulating Akt signaling. (PMID:35299128)
- ARHGAP4 promotes leukemogenesis in acute myeloid leukemia by inhibiting DRAM1 signaling. (PMID:37443303)
- DNA damage-regulated autophagy modulator 1 prevents glioblastoma cells proliferation by regulating lysosomal function and autophagic flux stability. (PMID:38537746)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | dram1 | ENSDARG00000045561 |
| mus_musculus | Dram1 | ENSMUSG00000020057 |
| rattus_norvegicus | Dram1 | ENSRNOG00000038916 |
| drosophila_melanogaster | CG4025 | FBGN0025624 |
| caenorhabditis_elegans | WBGENE00007878 | |
| caenorhabditis_elegans | WBGENE00020967 |
Paralogs (4): DRAM2 (ENSG00000156171), TMEM150A (ENSG00000168890), TMEM150B (ENSG00000180061), TMEM150C (ENSG00000249242)
Protein
Protein identifiers
DNA damage-regulated autophagy modulator protein 1 — Q8N682 (reviewed: Q8N682)
Alternative names: Damage-regulated autophagy modulator
All UniProt accessions (4): A0A0B4J256, Q8N682, H0YHJ0, H0YHV0
UniProt curated annotations — full annotation on UniProt →
Function. Lysosomal modulator of autophagy that plays a central role in p53/TP53-mediated apoptosis. Not involved in p73/TP73-mediated autophagy.
Subcellular location. Lysosome membrane.
Induction. By p53/TP53 and p73/TP73. Directly activated by p53/TP53. Significantly down-regulated in tumor cell lines by methylation-dependent transcriptional silencing.
Similarity. Belongs to the DRAM/TMEM150 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8N682-1 | 1 | yes |
| Q8N682-2 | 2 |
RefSeq proteins (1): NP_060840* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR019402 | CWH43_N | Domain |
| IPR050911 | DRAM/TMEM150_Autophagy_Mod | Family |
Pfam: PF10277
UniProt features (8 total): transmembrane region 6, chain 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8N682-F1 | 94.73 | 0.87 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 262 (showing top):
GOBP_REGULATION_OF_AUTOPHAGY, KOBAYASHI_EGFR_SIGNALING_24HR_UP, GOCC_VACUOLAR_MEMBRANE, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, MODULE_493, IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR, WIELAND_UP_BY_HBV_INFECTION, BOYLAN_MULTIPLE_MYELOMA_D_DN, MARTINEZ_RB1_TARGETS_UP, GOBP_CELLULAR_RESPONSE_TO_OXYGEN_LEVELS, FOSTER_TOLERANT_MACROPHAGE_UP, GOBP_REGULATION_OF_CATABOLIC_PROCESS, GOBP_RESPONSE_TO_OXYGEN_LEVELS, INGRAM_SHH_TARGETS_DN
GO Biological Process (4): autophagy (GO:0006914), apoptotic process (GO:0006915), regulation of autophagy (GO:0010506), cellular response to oxygen-glucose deprivation (GO:0090650)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (5): cytoplasm (GO:0005737), lysosome (GO:0005764), lysosomal membrane (GO:0005765), endomembrane system (GO:0012505), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| catabolic process | 1 |
| transmembrane transport | 1 |
| process utilizing autophagic mechanism | 1 |
| programmed cell death | 1 |
| apoptotic signaling pathway | 1 |
| execution phase of apoptosis | 1 |
| autophagy | 1 |
| regulation of catabolic process | 1 |
| cellular response to nutrient levels | 1 |
| cellular response to decreased oxygen levels | 1 |
| response to oxygen-glucose deprivation | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| lytic vacuole | 1 |
| lysosome | 1 |
| lytic vacuole membrane | 1 |
| vacuole | 1 |
| plasma membrane | 1 |
Protein interactions and networks
STRING
804 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DRAM1 | TP53 | P04637 | 830 |
| DRAM1 | SCAMP3 | O14828 | 696 |
| DRAM1 | BECN1 | Q14457 | 621 |
| DRAM1 | ATG5 | Q9H1Y0 | 581 |
| DRAM1 | SESN1 | Q9Y6P5 | 573 |
| DRAM1 | ATG7 | O95352 | 572 |
| DRAM1 | UVRAG | Q9P2Y5 | 557 |
| DRAM1 | ATG12 | O94817 | 543 |
| DRAM1 | SQSTM1 | Q13501 | 523 |
| DRAM1 | SESN2 | P58004 | 513 |
| DRAM1 | AMBRA1 | Q9C0C7 | 511 |
| DRAM1 | ULK1 | O75385 | 507 |
| DRAM1 | TIGAR | Q9NQ88 | 506 |
| DRAM1 | ULK2 | Q8IYT8 | 506 |
| DRAM1 | RB1CC1 | Q8TDY2 | 502 |
IntAct
27 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| DRAM1 | C1orf21 | psi-mi:“MI:0915”(physical association) | 0.560 |
| C1orf21 | DRAM1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CD164L2 | DRAM1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GPR42 | DRAM1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CLRN1 | DRAM1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EVI2B | DRAM1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DRAM1 | LRRC4C | psi-mi:“MI:0915”(physical association) | 0.560 |
| DRAM1 | TIMMDC1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DRAM1 | MS4A7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EPS15 | DRAM1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| DRAM1 | CREB3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| DRAM1 | CD164L2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| DRAM1 | GPR42 | psi-mi:“MI:0915”(physical association) | 0.000 |
| DRAM1 | CLRN1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| DRAM1 | LRRC4C | psi-mi:“MI:0915”(physical association) | 0.000 |
| DRAM1 | TIMMDC1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| DRAM1 | EVI2B | psi-mi:“MI:0915”(physical association) | 0.000 |
| DRAM1 | MS4A7 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (12): C1orf21 (Two-hybrid), DRAM1 (Two-hybrid), DRAM1 (Two-hybrid), DRAM1 (Two-hybrid), LRRC4C (Two-hybrid), CLRN1 (Two-hybrid), MS4A7 (Two-hybrid), CD164L2 (Two-hybrid), EVI2B (Two-hybrid), DRAM1 (Affinity Capture-RNA), DRAM1 (Protein-peptide), APP (Reconstituted Complex)
ESM2 similar proteins: A2A559, A2V7M9, A6H7B8, A6NC51, A6X919, A7MBB3, A7YWP2, A8KBG2, A8WFS8, A8XST1, A9JSP6, D4AD75, P70245, Q0VFE3, Q22141, Q29M88, Q2ABP2, Q2ABP3, Q2PZI1, Q32PK2, Q3TQR0, Q3ZC48, Q4V7T3, Q4V7T7, Q4VV71, Q568I2, Q5BK09, Q5BL33, Q5EAK8, Q5M9A7, Q60774, Q63175, Q68EV0, Q6NRS6, Q6P0S3, Q6UX65, Q6ZMB5, Q7K0P4, Q8BHJ6, Q8N682
Diamond homologs: A6NC51, A7MBB3, A9JSP6, B5DFH9, B9EJG8, Q28BP2, Q32PK2, Q3ZC48, Q4V7T3, Q4V7T7, Q5BK09, Q6GPL4, Q6UX65, Q86TG1, Q8C8S3, Q8N682, Q8R218, Q91WN2, Q9CR48, Q9QZE9, A5D7C9, Q5EAK8, Q6NRS6, Q9DC58
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TFEB | “up-regulates quantity by expression” | DRAM1 | “transcriptional regulation” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
36 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 22 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1221 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:101897861:AGT:A | acceptor_gain | 1.0000 |
| 12:101897862:GTG:G | acceptor_gain | 1.0000 |
| 12:101877919:AGGTG:A | donor_loss | 0.9900 |
| 12:101877921:G:A | donor_loss | 0.9900 |
| 12:101877922:T:A | donor_loss | 0.9900 |
| 12:101897857:T:TA | acceptor_gain | 0.9900 |
| 12:101897861:A:AG | acceptor_gain | 0.9900 |
| 12:101897862:G:GA | acceptor_gain | 0.9900 |
| 12:101897862:GT:G | acceptor_gain | 0.9900 |
| 12:101897931:G:GG | donor_gain | 0.9900 |
| 12:101897932:T:TC | donor_loss | 0.9900 |
| 12:101897933:AA:A | donor_loss | 0.9900 |
| 12:101899074:T:A | acceptor_gain | 0.9900 |
| 12:101920104:ATTAG:A | acceptor_gain | 0.9900 |
| 12:101921214:A:AG | acceptor_gain | 0.9900 |
| 12:101921215:G:GG | acceptor_gain | 0.9900 |
| 12:101921215:GA:G | acceptor_gain | 0.9900 |
| 12:101877921:G:GG | donor_gain | 0.9800 |
| 12:101897934:AGTA:A | donor_loss | 0.9800 |
| 12:101901285:TTTCA:T | acceptor_loss | 0.9800 |
| 12:101901286:TTCAG:T | acceptor_loss | 0.9800 |
| 12:101901287:TCAG:T | acceptor_loss | 0.9800 |
| 12:101901288:CA:C | acceptor_loss | 0.9800 |
| 12:101901290:G:GA | acceptor_loss | 0.9800 |
| 12:101903410:C:G | donor_gain | 0.9800 |
| 12:101908364:G:GG | donor_gain | 0.9800 |
| 12:101914172:A:AG | acceptor_gain | 0.9800 |
| 12:101914172:AGT:A | acceptor_gain | 0.9800 |
| 12:101914173:G:GA | acceptor_gain | 0.9800 |
| 12:101914173:GTG:G | acceptor_gain | 0.9800 |
AlphaMissense
1557 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:101897897:T:C | F56L | 0.999 |
| 12:101897899:T:A | F56L | 0.999 |
| 12:101897899:T:G | F56L | 0.999 |
| 12:101920145:T:A | W206R | 0.999 |
| 12:101920145:T:C | W206R | 0.999 |
| 12:101908207:C:G | H122D | 0.998 |
| 12:101920143:A:T | E205V | 0.998 |
| 12:101920144:A:C | E205D | 0.998 |
| 12:101920144:A:T | E205D | 0.998 |
| 12:101897871:G:A | G47E | 0.997 |
| 12:101901428:T:C | F113L | 0.997 |
| 12:101901430:T:A | F113L | 0.997 |
| 12:101901430:T:G | F113L | 0.997 |
| 12:101908231:T:C | F130L | 0.997 |
| 12:101908233:T:A | F130L | 0.997 |
| 12:101908233:T:G | F130L | 0.997 |
| 12:101901389:G:A | G100R | 0.996 |
| 12:101901389:G:C | G100R | 0.996 |
| 12:101901390:G:A | G100E | 0.996 |
| 12:101908207:C:A | H122N | 0.996 |
| 12:101920130:A:C | S201R | 0.996 |
| 12:101920132:T:A | S201R | 0.996 |
| 12:101920132:T:G | S201R | 0.996 |
| 12:101920147:G:C | W206C | 0.996 |
| 12:101920147:G:T | W206C | 0.996 |
| 12:101877878:C:A | A30D | 0.995 |
| 12:101877917:T:C | I43T | 0.995 |
| 12:101877920:G:A | S44N | 0.995 |
| 12:101901401:T:C | C104R | 0.995 |
| 12:101901408:G:A | G106E | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000085992 (12:101912326 G>A), RS1000138272 (12:101918200 A>G), RS1000188374 (12:101895714 G>A), RS1000283280 (12:101895851 T>C), RS1000349442 (12:101889882 G>A), RS1000439708 (12:101878246 G>T), RS1000471785 (12:101908094 C>T), RS1000576017 (12:101913825 G>A), RS1000720655 (12:101901643 T>C), RS1000803093 (12:101901885 A>G), RS1000894601 (12:101890414 A>G), RS1000896553 (12:101890285 G>A), RS1000928226 (12:101885487 T>C), RS1000982685 (12:101902836 C>T), RS1001042549 (12:101896260 A>G,T)
Disease associations
OMIM: gene MIM:610776 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
10 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001795_8 | Systemic lupus erythematosus | 9.000000e-12 |
| GCST006143_7 | Bone mineral density (total hip) | 3.000000e-06 |
| GCST007354_13 | Intracranial aneurysm | 2.000000e-08 |
| GCST008163_191 | Height | 2.000000e-07 |
| GCST010703_2 | Brain morphology (MOSTest) | 3.000000e-37 |
| GCST011956_134 | Systemic lupus erythematosus | 4.000000e-15 |
| GCST012207_12 | Shigella-associated diarrhea | 3.000000e-06 |
| GCST90000025_986 | Appendicular lean mass | 2.000000e-16 |
| GCST90000025_987 | Appendicular lean mass | 1.000000e-24 |
| GCST90020028_1676 | Hip circumference adjusted for BMI | 5.000000e-09 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007702 | hip bone mineral density |
| EFO:0004346 | neuroimaging measurement |
| EFO:0004980 | appendicular lean mass |
| EFO:0008039 | BMI-adjusted hip circumference |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
68 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | decreases methylation, increases expression | 5 |
| Valproic Acid | affects cotreatment, increases expression, increases methylation | 5 |
| Cisplatin | increases expression, affects expression, decreases response to substance | 4 |
| Tretinoin | increases expression | 4 |
| Aflatoxin B1 | affects expression, increases expression | 4 |
| Estradiol | affects cotreatment, increases expression, decreases expression, decreases reaction | 3 |
| Tetrachlorodibenzodioxin | affects cotreatment, increases expression, decreases expression | 3 |
| bisphenol A | decreases expression, increases methylation | 2 |
| sodium arsenite | decreases expression, increases abundance | 2 |
| entinostat | increases expression, affects cotreatment | 2 |
| Acetaminophen | decreases expression, increases expression | 2 |
| Doxorubicin | increases expression, affects response to substance | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 2 |
| 6,7-dimethoxy-2-(pyrrolidin-1-yl)-N-(5-(pyrrolidin-1-yl)pentyl)quinazolin-4-amine | increases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| trichostatin A | increases expression | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| arsenite | increases expression, affects reaction | 1 |
| sulforaphane | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| nickel sulfate | increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, affects cotreatment | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| polyhexamethyleneguanidine | increases expression | 1 |
| monomethylarsonous acid | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): brain aneurysm, shigellosis