DRC9
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Also known as DKFZp434B227CFAP122
Summary
DRC9 (dynein regulatory complex subunit 9, HGNC:25251) is a protein-coding gene on chromosome 3q29, encoding Dynein regulatory complex protein 9 (Q9H095). Component of the nexin-dynein regulatory complex (N-DRC), a key regulator of ciliary/flagellar motility which maintains the alignment and integrity of the distal axoneme and regulates microtubule sliding in motile axonemes.
Enables Hsp70 protein binding activity and calmodulin binding activity. Predicted to be involved in sperm axoneme assembly. Located in actin cytoskeleton and cytosol.
Source: NCBI Gene 84223 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 207 total — 12 pathogenic, 6 likely-pathogenic
- MANE Select transcript:
NM_032263
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25251 |
| Approved symbol | DRC9 |
| Name | dynein regulatory complex subunit 9 |
| Location | 3q29 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DKFZp434B227, DRC9, CFAP122 |
| Ensembl gene | ENSG00000114473 |
| Ensembl biotype | protein_coding |
| OMIM | 612477 |
| Entrez | 84223 |
Gene structure
Transcript identifiers
Ensembl transcripts: 24 — 16 protein_coding, 5 protein_coding_CDS_not_defined, 3 retained_intron
ENST00000265239, ENST00000416896, ENST00000452735, ENST00000453254, ENST00000455191, ENST00000463651, ENST00000469822, ENST00000473225, ENST00000478903, ENST00000480302, ENST00000485787, ENST00000490748, ENST00000493624, ENST00000860775, ENST00000860776, ENST00000860777, ENST00000935512, ENST00000960925, ENST00000960926, ENST00000960927, ENST00000960928, ENST00000960929, ENST00000960930, ENST00000960931
RefSeq mRNA: 6 — MANE Select: NM_032263
NM_001134435, NM_001323027, NM_001323028, NM_001323029, NM_001323030, NM_032263
CCDS: CCDS3331, CCDS82898
Canonical transcript exons
ENST00000265239 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001126166 | 197938548 | 197938780 |
| ENSE00001357300 | 197959529 | 197959719 |
| ENSE00001777867 | 197889077 | 197889714 |
| ENSE00001935689 | 197959845 | 197959991 |
| ENSE00003489565 | 197913881 | 197914042 |
| ENSE00003519020 | 197932174 | 197932302 |
| ENSE00003596141 | 197945620 | 197945686 |
| ENSE00003623618 | 197926024 | 197926105 |
| ENSE00003646118 | 197943778 | 197944051 |
| ENSE00003658212 | 197892628 | 197892759 |
| ENSE00003662136 | 197912675 | 197912749 |
| ENSE00003681986 | 197891446 | 197891547 |
Expression profiles
Bgee: expression breadth ubiquitous, 224 present calls, max score 98.30.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.6148 / max 217.0966, expressed in 1665 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 46466 | 3.0223 | 1224 |
| 46468 | 2.4094 | 1112 |
| 46467 | 0.5107 | 244 |
| 46462 | 0.4248 | 112 |
| 46465 | 0.1721 | 71 |
| 46463 | 0.0409 | 22 |
| 46464 | 0.0345 | 16 |
Top tissues by expression
281 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right uterine tube | UBERON:0001302 | 98.30 | gold quality |
| bronchial epithelial cell | CL:0002328 | 97.79 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 97.08 | gold quality |
| bronchus | UBERON:0002185 | 96.41 | gold quality |
| left testis | UBERON:0004533 | 96.12 | gold quality |
| right testis | UBERON:0004534 | 95.85 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 95.39 | gold quality |
| sperm | CL:0000019 | 94.55 | gold quality |
| testis | UBERON:0000473 | 94.46 | gold quality |
| left ovary | UBERON:0002119 | 94.15 | gold quality |
| right ovary | UBERON:0002118 | 93.01 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 92.43 | gold quality |
| male germ cell | CL:0000015 | 92.32 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 92.18 | gold quality |
| ovary | UBERON:0000992 | 92.03 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 88.17 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 87.69 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 87.60 | gold quality |
| left adrenal gland | UBERON:0001234 | 87.58 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 87.23 | gold quality |
| right adrenal gland | UBERON:0001233 | 86.59 | gold quality |
| adrenal cortex | UBERON:0001235 | 86.38 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 86.18 | gold quality |
| adrenal gland | UBERON:0002369 | 86.13 | gold quality |
| caudate nucleus | UBERON:0001873 | 85.85 | gold quality |
| adenohypophysis | UBERON:0002196 | 85.24 | gold quality |
| nucleus accumbens | UBERON:0001882 | 84.99 | gold quality |
| cortical plate | UBERON:0005343 | 84.83 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 84.64 | gold quality |
| calcaneal tendon | UBERON:0003701 | 84.46 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-130148 | yes | 11.94 |
| E-CURD-114 | yes | 11.32 |
| E-MTAB-7249 | yes | 11.09 |
| E-ANND-3 | yes | 10.15 |
| E-MTAB-9388 | yes | 7.08 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
30 targeting DRC9, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-8063 | 99.91 | 69.76 | 3146 |
| HSA-MIR-4496 | 99.88 | 68.89 | 2236 |
| HSA-MIR-6739-5P | 99.80 | 67.87 | 2806 |
| HSA-MIR-6733-5P | 99.74 | 67.94 | 2759 |
| HSA-MIR-4530 | 99.69 | 66.47 | 1509 |
| HSA-MIR-4729 | 99.69 | 72.18 | 4233 |
| HSA-MIR-4261 | 99.59 | 70.30 | 3415 |
| HSA-MIR-3153 | 99.55 | 67.59 | 2337 |
| HSA-MIR-5009-3P | 99.45 | 69.43 | 1341 |
| HSA-MIR-147B-5P | 99.45 | 70.62 | 2432 |
| HSA-MIR-4251 | 99.40 | 69.19 | 3363 |
| HSA-MIR-940 | 99.37 | 66.14 | 2064 |
| HSA-MIR-6719-3P | 99.29 | 67.78 | 1387 |
| HSA-MIR-4292 | 99.16 | 65.57 | 1767 |
| HSA-MIR-6791-5P | 99.16 | 65.92 | 1844 |
| HSA-MIR-6071 | 99.16 | 67.77 | 1780 |
| HSA-MIR-4742-5P | 98.89 | 68.41 | 1542 |
| HSA-MIR-7977 | 98.65 | 66.18 | 2590 |
| HSA-MIR-1178-3P | 98.57 | 67.09 | 890 |
| HSA-MIR-93-3P | 98.15 | 66.65 | 1309 |
| HSA-MIR-1279 | 97.83 | 67.50 | 1898 |
| HSA-MIR-634 | 97.74 | 67.11 | 818 |
| HSA-MIR-1224-3P | 97.24 | 65.92 | 851 |
| HSA-MIR-3184-3P | 96.96 | 66.91 | 845 |
| HSA-MIR-6823-5P | 96.26 | 65.69 | 919 |
| HSA-MIR-759 | 96.16 | 66.77 | 873 |
| HSA-MIR-6826-5P | 93.80 | 67.42 | 514 |
Literature-anchored findings (GeneRIF, showing 1)
- human NUP98-IQCG fusion protein could induce fatal and transplantable acute myelomonocytic leukemia in a mouse model (PMID:26675333)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | iqcg | ENSDARG00000068678 |
| mus_musculus | Iqcg | ENSMUSG00000035578 |
| rattus_norvegicus | Iqcg | ENSRNOG00000026420 |
| drosophila_melanogaster | CG13972 | FBGN0039522 |
Protein
Protein identifiers
Dynein regulatory complex protein 9 — Q9H095 (reviewed: Q9H095)
Alternative names: IQ domain-containing protein G
All UniProt accessions (4): C9J6M9, C9JKX8, C9JUC1, Q9H095
UniProt curated annotations — full annotation on UniProt →
Function. Component of the nexin-dynein regulatory complex (N-DRC), a key regulator of ciliary/flagellar motility which maintains the alignment and integrity of the distal axoneme and regulates microtubule sliding in motile axonemes. Binds calmodulin when cellular Ca(2+) levels are low and thereby contributes to the regulation of calcium and calmodulin-dependent protein kinase IV (CAMK4) activity; contributes to the regulation of CAMK4 signaling cascades. Required for normal axoneme assembly in sperm flagella, normal sperm tail formation and for male fertility.
Subunit / interactions. Component of the nexin-dynein regulatory complex (N-DRC). Interacts (via IQ domain) with CALM when calcium levels are low. Does not interact with CALM in the presence of Ca(2+). Interacts with the HSP70 proteins HSPA1L and HSPA8. May form a complex with CAMK4 and HSP70.
Subcellular location. Cytoplasm. Cell projection. Cilium. Flagellum. Cytoskeleton. Flagellum axoneme.
Domain organisation. The IQ domain mediates interaction with calmodulin when cellular Ca(2+) levels are low.
Similarity. Belongs to the DRC9 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9H095-1 | 1 | yes |
| Q9H095-2 | 2 |
RefSeq proteins (6): NP_001127907, NP_001309956, NP_001309957, NP_001309958, NP_001309959, NP_115639* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000048 | IQ_motif_EF-hand-BS | Binding_site |
| IPR042618 | IQCG | Family |
Pfam: PF00612
UniProt features (11 total): region of interest 2, compositionally biased region 2, chain 1, domain 1, helix 1, splice variant 1, sequence variant 1, mutagenesis site 1, sequence conflict 1
Structure
Experimental structures (PDB)
3 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4LZX | X-RAY DIFFRACTION | 1.5 |
| 4M1L | X-RAY DIFFRACTION | 2.1 |
| 8J07 | ELECTRON MICROSCOPY | 4.1 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9H095-F1 | 72.42 | 0.44 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 401 | loss of calmodulin binding. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 156 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_MCMV_INFECTION_DN, GAUSSMANN_MLL_AF4_FUSION_TARGETS_A_DN, GOBP_MALE_GAMETE_GENERATION, SENGUPTA_NASOPHARYNGEAL_CARCINOMA_DN, GOBP_CILIUM_ORGANIZATION, GOBP_CILIUM_MOVEMENT, GOBP_CILIUM_OR_FLAGELLUM_DEPENDENT_CELL_MOTILITY, NAKAMURA_LUNG_CANCER_DIFFERENTIATION_MARKERS, GOBP_ORGANELLE_ASSEMBLY, GOBP_CELLULAR_PROCESS_INVOLVED_IN_REPRODUCTION_IN_MULTICELLULAR_ORGANISM, GOBP_MICROTUBULE_BUNDLE_FORMATION, NAKAMURA_BRONCHIAL_AND_BRONCHIOLAR_EPITHELIA, BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_UP, TGGNNNNNNKCCAR_UNKNOWN, GOBP_DEVELOPMENTAL_PROCESS_INVOLVED_IN_REPRODUCTION
GO Biological Process (5): spermatid development (GO:0007286), sperm axoneme assembly (GO:0007288), cilium organization (GO:0044782), spermatogenesis (GO:0007283), cell differentiation (GO:0030154)
GO Molecular Function (3): calmodulin binding (GO:0005516), Hsp70 protein binding (GO:0030544), protein binding (GO:0005515)
GO Cellular Component (10): manchette (GO:0002177), cytoplasm (GO:0005737), cytosol (GO:0005829), actin cytoskeleton (GO:0015629), motile cilium (GO:0031514), sperm flagellum (GO:0036126), extracellular exosome (GO:0070062), cytoskeleton (GO:0005856), cilium (GO:0005929), cell projection (GO:0042995)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| developmental process involved in reproduction | 2 |
| germ cell development | 1 |
| spermatid differentiation | 1 |
| axoneme assembly | 1 |
| sperm flagellum assembly | 1 |
| organelle organization | 1 |
| plasma membrane bounded cell projection organization | 1 |
| male gamete generation | 1 |
| cellular developmental process | 1 |
| protein binding | 1 |
| heat shock protein binding | 1 |
| protein-folding chaperone binding | 1 |
| binding | 1 |
| microtubule cytoskeleton | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| cytoskeleton | 1 |
| cilium | 1 |
| 9+2 motile cilium | 1 |
| extracellular vesicle | 1 |
| intracellular membraneless organelle | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane bounded cell projection | 1 |
Protein interactions and networks
STRING
610 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DRC9 | DRC5 | Q5JU00 | 708 |
| DRC9 | DRC7 | Q8IY82 | 706 |
| DRC9 | DRC3 | Q9H069 | 607 |
| DRC9 | FBXL13 | Q8NEE6 | 594 |
| DRC9 | CCDC83 | Q8IWF9 | 549 |
| DRC9 | TTLL5 | Q6EMB2 | 541 |
| DRC9 | DRC4 | O95995 | 525 |
| DRC9 | SPATA6L | Q8N4H0 | 502 |
| DRC9 | DNAI3 | Q8IWG1 | 490 |
| DRC9 | IQCF1 | Q8N6M8 | 474 |
| DRC9 | MNS1 | Q8NEH6 | 472 |
| DRC9 | SLC26A8 | Q96RN1 | 468 |
| DRC9 | NUP98 | P52948 | 457 |
| DRC9 | MAX | P25912 | 456 |
| DRC9 | CDADC1 | Q9BWV3 | 446 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| IQCG | psi-mi:“MI:0915”(physical association) | 0.560 | |
| IQCG | HNRNPA1L2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| IQCG | GSK3B | psi-mi:“MI:0915”(physical association) | 0.370 |
| IQCG | psi-mi:“MI:0915”(physical association) | 0.000 | |
| IQCG | BAG6 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (11): IQCG (Proximity Label-MS), BAG6 (Two-hybrid), CALM2 (Two-hybrid), CALM3 (Two-hybrid), CALM1 (Two-hybrid), IQCG (Proximity Label-MS), IQCG (Affinity Capture-MS), IQCG (Proximity Label-MS), IQCG (Negative Genetic), IQCG (Affinity Capture-MS), IQCG (Two-hybrid)
ESM2 similar proteins: A0JMY4, A2AJB1, A2BDR7, A3KQH2, A8HQ54, A8J0N6, A8KB59, F1QRC1, F1RKB1, M1V4Y8, Q08C53, Q0VFN8, Q0VFX2, Q17QH9, Q28BZ7, Q28IH8, Q2T9V2, Q2TAA8, Q3SZX9, Q3USS3, Q3UZ57, Q4R6I5, Q4R8Y5, Q4V7B0, Q502W7, Q5M6W3, Q5PQQ6, Q5RA03, Q5T1B0, Q5XI65, Q5XIR6, Q5XIR8, Q5XJN6, Q6DHI2, Q6IQY5, Q7T0S7, Q80W32, Q8C5T8, Q8CDN8, Q8NHQ8
Diamond homologs: A3KQH2, Q2T9V2, Q5PQQ6, Q80W32, Q9GKR7, Q9H095, Q9D3V1
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| IQCG | “form complex” | “Nexin-dynein regulatory complex” | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
207 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 12 |
| Likely pathogenic | 6 |
| Uncertain significance | 90 |
| Likely benign | 58 |
| Benign | 11 |
Top pathogenic / likely-pathogenic (18)
| Variant ID | HGVS | Classification |
|---|---|---|
| 13001 | NM_000996.4(RPL35A):c.97G>A (p.Val33Ile) | Pathogenic |
| 13003 | NM_000996.4(RPL35A):c.304C>T (p.Arg102Ter) | Pathogenic |
| 2579209 | GRCh38/hg38 3q29(chr3:197681032-198111976)x1 | Pathogenic |
| 2747077 | NM_000996.4(RPL35A):c.147del (p.Ala48_Tyr49insTer) | Pathogenic |
| 3062693 | GRCh37/hg19 3q29(chr3:197583068-197851986)x1 | Pathogenic |
| 3246899 | NC_000003.11:g.(?197401889)(197682644_?)del | Pathogenic |
| 469500 | NC_000003.12:g.(?197950962)(197955779_?)del | Pathogenic |
| 537236 | NM_000996.4(RPL35A):c.212G>A (p.Trp71Ter) | Pathogenic |
| 583098 | NM_000996.4(RPL35A):c.118_119del (p.Glu40fs) | Pathogenic |
| 638098 | GRCh37/hg19 3q28-29(chr3:188386566-197838262)x3 | Pathogenic |
| 647968 | NC_000003.12:g.(?197950958)(197955783_?)del | Pathogenic |
| 807674 | NM_000996.4(RPL35A):c.258del (p.Lys87fs) | Pathogenic |
| 1008059 | NM_000996.4(RPL35A):c.89T>C (p.Ile30Thr) | Likely pathogenic |
| 1777261 | NM_000996.4(RPL35A):c.165-16_166del | Likely pathogenic |
| 2423447 | NC_000003.11:g.(?197680864)(197682644_?)del | Likely pathogenic |
| 3765148 | NM_032263.5(IQCG):c.-60+5377C>G | Likely pathogenic |
| 4720762 | NM_000996.4(RPL35A):c.140G>T (p.Cys47Phe) | Likely pathogenic |
| 843293 | NM_000996.4(RPL35A):c.164+1G>A | Likely pathogenic |
SpliceAI
2571 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:197891543:CTTAT:C | acceptor_gain | 1.0000 |
| 3:197891544:TTAT:T | acceptor_gain | 1.0000 |
| 3:197891544:TTATC:T | acceptor_loss | 1.0000 |
| 3:197891545:TATCT:T | acceptor_loss | 1.0000 |
| 3:197891546:ATC:A | acceptor_loss | 1.0000 |
| 3:197891548:C:CC | acceptor_gain | 1.0000 |
| 3:197891548:CTGCA:C | acceptor_loss | 1.0000 |
| 3:197892627:CCAT:C | donor_gain | 1.0000 |
| 3:197892757:TTT:T | acceptor_gain | 1.0000 |
| 3:197892758:TT:T | acceptor_gain | 1.0000 |
| 3:197892760:C:CC | acceptor_gain | 1.0000 |
| 3:197892764:T:C | acceptor_gain | 1.0000 |
| 3:197892764:T:TC | acceptor_gain | 1.0000 |
| 3:197932161:A:C | donor_gain | 1.0000 |
| 3:197932169:CTGA:C | donor_loss | 1.0000 |
| 3:197932170:TGAC:T | donor_loss | 1.0000 |
| 3:197932208:C:A | donor_gain | 1.0000 |
| 3:197932299:CTGC:C | acceptor_gain | 1.0000 |
| 3:197932300:TGC:T | acceptor_gain | 1.0000 |
| 3:197932301:GCC:G | acceptor_loss | 1.0000 |
| 3:197932302:CCTG:C | acceptor_loss | 1.0000 |
| 3:197932303:C:CC | acceptor_gain | 1.0000 |
| 3:197932304:T:A | acceptor_loss | 1.0000 |
| 3:197943755:A:C | donor_gain | 1.0000 |
| 3:197943760:T:C | donor_gain | 1.0000 |
| 3:197943796:C:CA | donor_gain | 1.0000 |
| 3:197943804:A:AC | donor_gain | 1.0000 |
| 3:197943805:C:CC | donor_gain | 1.0000 |
| 3:197944047:TGTCT:T | acceptor_gain | 1.0000 |
| 3:197944048:GTCT:G | acceptor_gain | 1.0000 |
AlphaMissense
2985 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:197891513:C:G | R377P | 0.993 |
| 3:197889698:C:G | R405P | 0.992 |
| 3:197892689:A:G | L345P | 0.992 |
| 3:197892647:A:G | L359P | 0.991 |
| 3:197889702:A:G | W404R | 0.989 |
| 3:197889702:A:T | W404R | 0.989 |
| 3:197912691:A:G | L316P | 0.987 |
| 3:197889708:C:G | A402P | 0.986 |
| 3:197914017:A:G | L251P | 0.983 |
| 3:197892698:T:G | Q342P | 0.982 |
| 3:197892638:A:G | L362P | 0.981 |
| 3:197892680:A:G | L348P | 0.981 |
| 3:197892735:A:G | W330R | 0.981 |
| 3:197892735:A:T | W330R | 0.981 |
| 3:197892743:A:G | L327P | 0.981 |
| 3:197914005:A:G | L255P | 0.981 |
| 3:197913945:A:G | L275P | 0.980 |
| 3:197889683:C:G | R410P | 0.979 |
| 3:197912693:G:C | F315L | 0.979 |
| 3:197912693:G:T | F315L | 0.979 |
| 3:197912695:A:G | F315L | 0.979 |
| 3:197913991:C:G | A260P | 0.979 |
| 3:197943836:A:G | L75P | 0.977 |
| 3:197892636:C:G | A363P | 0.971 |
| 3:197892666:C:G | A353P | 0.971 |
| 3:197889705:A:G | W403R | 0.970 |
| 3:197889705:A:T | W403R | 0.970 |
| 3:197912745:A:G | L298P | 0.970 |
| 3:197914024:C:G | A249P | 0.968 |
| 3:197892755:A:G | L323P | 0.966 |
dbSNP variants (sampled 300 via entrez): RS1000017520 (3:197942547 A>C), RS1000128431 (3:197900032 G>A), RS1000173845 (3:197932947 ATATTATATAT>A), RS1000189308 (3:197901862 G>A), RS1000269576 (3:197960929 A>G), RS1000362000 (3:197892948 T>C), RS1000397713 (3:197928941 C>T), RS1000428733 (3:197928585 A>G), RS1000479540 (3:197900206 C>T), RS1000566547 (3:197916674 A>G), RS1000577665 (3:197898932 G>A), RS1000603970 (3:197951092 G>A,C,T), RS1000619386 (3:197950342 T>G), RS1000693038 (3:197950175 C>A,G,T), RS1000772618 (3:197939190 G>C)
Disease associations
OMIM: gene MIM:612477 | disease phenotypes: MIM:612528, MIM:105650
GenCC curated gene-disease
Mondo (2): Diamond-Blackfan anemia 5 (MONDO:0012925), Diamond-Blackfan anemia (MONDO:0015253)
Orphanet (1): Diamond-Blackfan anemia (Orphanet:124)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D029503 | Anemia, Diamond-Blackfan | C15.378.050.085.080.090; C15.378.050.750.500; C15.378.190.223.500.500.090; C16.320.077.090 |
| C567280 | Diamond-Blackfan Anemia 5 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
32 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, affects cotreatment, decreases expression, decreases methylation | 5 |
| Benzo(a)pyrene | affects methylation, decreases expression, increases methylation | 3 |
| Air Pollutants | affects expression, increases abundance, increases expression | 2 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 2 |
| bisphenol F | affects cotreatment, increases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects cotreatment, increases expression | 1 |
| trichostatin A | affects expression | 1 |
| sodium arsenite | increases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| aflatoxin B2 | increases methylation | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| bisphenol S | affects cotreatment, increases expression | 1 |
| jinfukang | increases expression | 1 |
| Temozolomide | increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Carbamazepine | affects expression | 1 |
| Cisplatin | decreases expression | 1 |
| Dexamethasone | affects cotreatment, increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Indomethacin | affects cotreatment, increases expression | 1 |
| Lead | decreases expression | 1 |
| Methapyrilene | increases methylation | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Ozone | affects expression, increases abundance | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Smoke | increases abundance, increases expression | 1 |
| Urethane | decreases expression | 1 |
Clinical trials (associated diseases)
38 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00673608 | PHASE4 | COMPLETED | Magnetic Resonance Imaging (MRI) Assessments of the Heart and Liver Iron Load in Patients With Transfusion Induced Iron Overload |
| NCT00235391 | PHASE3 | COMPLETED | Expanded Access of Deferasirox to Patients With Congenital Disorders of Red Blood Cells and Chronic Iron Overload |
| NCT00001962 | PHASE2 | TERMINATED | A Study to Determine Whether Therapy With Daclizumab Will Benefit Patients With Bone Marrow Failure |
| NCT00011505 | PHASE2 | COMPLETED | Mobilization of Stem Cells With G-CSF for Collection From Patients With Diamond-Blackfan Anemia |
| NCT00301834 | PHASE2 | COMPLETED | Alemtuzumab, Fludarabine, and Busulfan Followed By Donor Stem Cell Transplant in Treating Young Patients With Hematologic Disorders |
| NCT00957931 | PHASE2 | COMPLETED | Allo-HCT MUD for Non-malignant Red Blood Cell (RBC) Disorders: Sickle Cell, Thal, and DBA: Reduced Intensity Conditioning, Co-tx MSCs |
| NCT01529827 | PHASE2 | COMPLETED | Fludarabine Phosphate, Melphalan, and Low-Dose Total-Body Irradiation Followed by Donor Peripheral Blood Stem Cell Transplant in Treating Patients With Hematologic Malignancies |
| NCT02386267 | PHASE2 | UNKNOWN | L-leucine in Diamond Blackfan Anemia Patients |
| NCT02512679 | PHASE2 | TERMINATED | Related Hematopoietic Stem Cell Transplantation (HSCT) for Genetic Diseases of Blood Cells |
| NCT03333486 | PHASE2 | TERMINATED | Fludarabine Phosphate, Cyclophosphamide, Total Body Irradiation, and Donor Stem Cell Transplant in Treating Patients With Blood Cancer |
| NCT04099966 | PHASE2 | RECRUITING | AlloSCT for Malignant and Non-malignant Hematologic Diseases Utilizing Alpha/Beta T Cell and CD19+ B Cell Depletion |
| NCT04965597 | PHASE2 | COMPLETED | Treosulfan-Based Conditioning Regimen Before a Blood or Bone Marrow Transplant for the Treatment of Bone Marrow Failure Diseases (BMT CTN 1904) |
| NCT01586455 | PHASE1 | COMPLETED | Human Placental-Derived Stem Cell Transplantation |
| NCT01917708 | PHASE1 | COMPLETED | Bone Marrow Transplant With Abatacept for Non-Malignant Diseases |
| NCT00176852 | PHASE2/PHASE3 | COMPLETED | Stem Cell Transplant for Hemoglobinopathy |
| NCT00176878 | PHASE2/PHASE3 | COMPLETED | Stem Cell Transplant for Bone Marrow Failure Syndromes |
| NCT00305708 | PHASE1/PHASE2 | COMPLETED | Busulfan, Antithymocyte Globulin, and Fludarabine Followed By a Donor Stem Cell Transplant in Treating Young Patients With Blood Disorders, Bone Marrow Disorders, Chronic Myelogenous Leukemia in First Chronic Phase, or Acute Myeloid Leukemia in First Remission |
| NCT01362595 | PHASE1/PHASE2 | COMPLETED | Pilot Phase I/II Study of Amino Acid Leucine in Treatment of Patients With Transfusion-Dependent Diamond Blackfan Anemia |
| NCT01419704 | PHASE1/PHASE2 | WITHDRAWN | Phase I/II Pilot Study of Mixed Chimerism to Treat Hemoglobinopathies |
| NCT01464164 | PHASE1/PHASE2 | TERMINATED | Safety and Efficacy Study of Sotatercept in Adults With Transfusion Dependent Diamond Blackfan Anemia |
| NCT01966367 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | CD34+ (Non-Malignant) Stem Cell Selection for Patients Receiving Allogeneic Stem Cell Transplantation |
| NCT02065869 | PHASE1/PHASE2 | TERMINATED | Safety Study of Gene Modified Donor T-cells Following TCRαβ+ Depleted Stem Cell Transplant |
| NCT03513328 | PHASE1/PHASE2 | COMPLETED | Conditioning Regimen for Allogeneic Hematopoietic Stem-Cell Transplantation |
| NCT03653338 | PHASE1/PHASE2 | RECRUITING | T-Cell Depleted Alternative Donor Bone Marrow Transplant for Sickle Cell Disease (SCD) and Other Anemias |
| NCT03733249 | PHASE1/PHASE2 | TERMINATED | Long Term Follow-up Study for Patients Enrolled on the BP-004 Clinical Study |
| NCT03966053 | PHASE1/PHASE2 | TERMINATED | The Use of Trifluoperazine in Transfusion Dependent DBA |
| NCT00027274 | Not specified | RECRUITING | Cancer in Inherited Bone Marrow Failure Syndromes |
| NCT00244010 | Not specified | COMPLETED | Partially Matched Stem Cell Transplantation for Patients With Refractory Severe Aplastic Anemia or Refractory Cytopenias |
| NCT00290628 | Not specified | TERMINATED | Donor Umbilical Cord Blood Transplant in Treating Patients With Hematologic Cancer |
| NCT01114776 | Not specified | COMPLETED | Multi-Center Study of Iron Overload: Pilot Study |
| NCT01319851 | Not specified | TERMINATED | Alefacept and Allogeneic Hematopoietic Stem Cell Transplantation |
| NCT01758042 | Not specified | COMPLETED | Bone Marrow and Kidney Transplant for Patients With Chronic Kidney Disease and Blood Disorders |
| NCT01913548 | Not specified | COMPLETED | Multi-Center Study of Iron Overload: Survey Study (MCSIO) |
| NCT02179359 | Not specified | TERMINATED | Hematopoietic Stem Cell Transplant for High Risk Hemoglobinopathies |
| NCT02720679 | Not specified | RECRUITING | Investigation of the Genetics of Hematologic Diseases |
| NCT03050268 | Not specified | RECRUITING | Familial Investigations of Childhood Cancer Predisposition |
| NCT05687474 | Not specified | COMPLETED | Baby Detect : Genomic Newborn Screening |
| NCT07186179 | Not specified | RECRUITING | Mobilization of CD34+ Peripheral Blood Stem Cells in Patients With Diamond Blackfan Anemia Syndrome (DBAS) |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Diamond-Blackfan anemia, Diamond-Blackfan anemia 5