DSP
gene geneOn this page
Also known as KPPS2PPKS2DPIDPIIDP
Summary
DSP (desmoplakin, HGNC:3052) is a protein-coding gene on chromosome 6p24.3, encoding Desmoplakin (P15924). A component of desmosome cell-cell junctions which are required for positive regulation of cellular adhesion. It is haploinsufficient (ClinGen: sufficient evidence).
This gene encodes a protein that anchors intermediate filaments to desmosomal plaques and forms an obligate component of functional desmosomes. Mutations in this gene are the cause of several cardiomyopathies and keratodermas, including skin fragility-woolly hair syndrome. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 1832 — RefSeq curated summary.
At a glance
- Gene–disease (curated): arrhythmogenic cardiomyopathy with wooly hair and keratoderma (Definitive, ClinGen) — +11 more curated relationships
- GWAS associations: 33 (top 4% of genes corpus-wide)
- Clinical variants (ClinVar): 6,156 total — 512 pathogenic, 211 likely-pathogenic (top 1% of genes corpus-wide)
- GTEx eGene: eQTL in 23 tissues, sQTL in 0 (q < 0.05)
- Phenotypes (HPO): 110
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 1 cancer types (inferred from mutation patterns)
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- Constraint (gnomAD): pLI 1.00 (loss-of-function intolerant), LOEUF 0.44 (moderately constrained)
- MANE Select transcript:
NM_004415
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3052 |
| Approved symbol | DSP |
| Name | desmoplakin |
| Location | 6p24.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KPPS2, PPKS2, DPI, DPII, DP |
| Ensembl gene | ENSG00000096696 |
| Ensembl biotype | protein_coding |
| OMIM | 125647 |
| Entrez | 1832 |
Gene structure
Transcript identifiers
Ensembl transcripts: 19 — 9 protein_coding, 6 nonsense_mediated_decay, 4 retained_intron
MANE Select: ENST00000379802
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 2, TSL 3: 1
ENST00000379802, ENST00000418664, ENST00000506617, ENST00000682228, ENST00000683563, ENST00000683682, ENST00000684395, ENST00000710359, ENST00000713869, ENST00000713903, ENST00000713904, ENST00000713909, ENST00000713910, ENST00000713911, ENST00000713912, ENST00000713913, ENST00000713918, ENST00000713924, ENST00001137435
RefSeq mRNA: 4 — MANE Select: NM_004415
NM_001008844, NM_001319034, NM_001406591, NM_004415
CCDS: CCDS4501, CCDS47368
Canonical transcript exons
ENST00000379802 — 24 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001154944 | 7578464 | 7578562 |
| ENSE00001154954 | 7577779 | 7577886 |
| ENSE00001154962 | 7576959 | 7577042 |
| ENSE00001154968 | 7576294 | 7576456 |
| ENSE00001154975 | 7575295 | 7575488 |
| ENSE00001154978 | 7574657 | 7574795 |
| ENSE00001154981 | 7574086 | 7574252 |
| ENSE00001154985 | 7571842 | 7572068 |
| ENSE00001154992 | 7571383 | 7571584 |
| ENSE00001154996 | 7570437 | 7570563 |
| ENSE00001155002 | 7569186 | 7569340 |
| ENSE00001155008 | 7568437 | 7568589 |
| ENSE00001155013 | 7567781 | 7567906 |
| ENSE00001155018 | 7567354 | 7567449 |
| ENSE00001155330 | 7566377 | 7566481 |
| ENSE00001155338 | 7565359 | 7565520 |
| ENSE00001155357 | 7559226 | 7559400 |
| ENSE00001155361 | 7558116 | 7558264 |
| ENSE00001155370 | 7555718 | 7555820 |
| ENSE00003488058 | 7562652 | 7562780 |
| ENSE00003691486 | 7563736 | 7563786 |
| ENSE00004021647 | 7579275 | 7581569 |
| ENSE00004021766 | 7541671 | 7542085 |
| ENSE00004021782 | 7582642 | 7586714 |
Expression profiles
Bgee: expression breadth ubiquitous, 253 present calls, max score 99.86.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 67.5201 / max 7657.2682, expressed in 1325 samples.
Highest expression (Bgee): skin of hip, upper leg skin, hair follicle, penis, gingival epithelium.
Genetic regulation across tissues (GTEx eQTL / sQTL)
DSP is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 23 tissues and its splicing (sQTL) in 0 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 23 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Lung | eqtl | 9.6e-70 | -0.70 | 6:7562999:T:G |
| Nerve Tibial | eqtl | 6.4e-45 | +0.66 | 6:7402342:C:T |
| Adipose Subcutaneous | eqtl | 9.0e-35 | -0.44 | 6:7387588:T:TCA |
| Spleen | eqtl | 1.6e-17 | +0.62 | 6:7442378:A:G |
| Whole Blood | eqtl | 1.6e-13 | +0.32 | 6:7441489:T:C |
| Cells EBV-transformed lymphocytes | eqtl | 6.7e-08 | +0.77 | 6:7542670:C:G |
| Esophagus Muscularis | eqtl | 1.9e-07 | -0.31 | 6:7411598:T:G |
| Brain Nucleus accumbens basal ganglia | eqtl | 1.0e-06 | -0.43 | 6:7360935:C:T |
| Brain Cerebellar Hemisphere | eqtl | 5.7e-06 | +1.00 | 6:7345640:A:G |
| Muscle Skeletal | eqtl | 7.8e-06 | -0.27 | 6:7334881:C:T |
| Adipose Visceral Omentum | eqtl | 7.7e-05 | +0.14 | 6:7399656:C:T |
| Uterus | eqtl | 2.8e-04 | +0.54 | 6:7486547:C:T |
| Esophagus Gastroesophageal Junction | eqtl | 1.6e-03 | -0.24 | 6:7389844:C:T |
| Heart Atrial Appendage | eqtl | 7.1e-03 | -0.08 | 6:7424822:T:G |
| Adrenal Gland | eqtl | 1.2e-02 | -0.21 | 6:7542278:TC:T |
| Esophagus Mucosa | eqtl | 1.3e-02 | +0.07 | 6:7438728:C:G |
| Heart Left Ventricle | eqtl | 2.1e-02 | -0.13 | 6:7518950:T:C |
| Brain Caudate basal ganglia | eqtl | 2.4e-02 | -0.21 | 6:7543997:C:T |
| Thyroid | eqtl | 2.9e-02 | -0.11 | 6:7548823:C:A |
| Cells Cultured fibroblasts | eqtl | 3.0e-02 | -0.12 | 6:7566153:T:C |
FANTOM5 promoters
showing 10 of 19 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 65658 | 33.2920 | 1053 |
| 65657 | 16.9911 | 1031 |
| 65656 | 3.3531 | 607 |
| 65653 | 2.8164 | 798 |
| 65678 | 2.2549 | 541 |
| 65679 | 2.0247 | 512 |
| 65703 | 1.6463 | 496 |
| 65655 | 1.5381 | 642 |
| 65677 | 0.8801 | 341 |
| 65681 | 0.7223 | 288 |
Top tissues by expression
showing 100 of 288 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| skin of hip | UBERON:0001554 | 99.86 | gold quality |
| upper leg skin | UBERON:0004262 | 99.84 | gold quality |
| hair follicle | UBERON:0002073 | 99.83 | gold quality |
| penis | UBERON:0000989 | 99.80 | gold quality |
| gingival epithelium | UBERON:0001949 | 99.80 | gold quality |
| gingiva | UBERON:0001828 | 99.79 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 99.78 | gold quality |
| mammalian vulva | UBERON:0000997 | 99.77 | gold quality |
| squamous epithelium | UBERON:0006914 | 99.76 | gold quality |
| upper arm skin | UBERON:0004263 | 99.75 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 99.73 | gold quality |
| oral cavity | UBERON:0000167 | 99.72 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 99.70 | gold quality |
| nipple | UBERON:0002030 | 99.68 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 99.63 | gold quality |
| cervix epithelium | UBERON:0004801 | 99.53 | gold quality |
| skin of abdomen | UBERON:0001416 | 99.39 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 99.36 | gold quality |
| zone of skin | UBERON:0000014 | 99.34 | gold quality |
| body of tongue | UBERON:0011876 | 99.29 | gold quality |
| heart right ventricle | UBERON:0002080 | 99.19 | gold quality |
| jejunal mucosa | UBERON:0000399 | 99.18 | gold quality |
| skin of leg | UBERON:0001511 | 99.16 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 99.01 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 98.93 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 98.83 | gold quality |
| tongue | UBERON:0001723 | 98.81 | gold quality |
| myocardium | UBERON:0002349 | 98.76 | gold quality |
| esophagus mucosa | UBERON:0002469 | 98.76 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 98.63 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 98.60 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 98.55 | gold quality |
| colonic mucosa | UBERON:0000317 | 98.40 | gold quality |
| corpus epididymis | UBERON:0004359 | 98.22 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 98.22 | gold quality |
| parotid gland | UBERON:0001831 | 98.09 | gold quality |
| superior surface of tongue | UBERON:0007371 | 97.96 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 97.92 | gold quality |
| amniotic fluid | UBERON:0000173 | 97.88 | gold quality |
| mammary duct | UBERON:0001765 | 97.86 | gold quality |
| tonsil | UBERON:0002372 | 97.84 | gold quality |
| bronchial epithelial cell | CL:0002328 | 97.70 | gold quality |
| ileal mucosa | UBERON:0000331 | 97.69 | gold quality |
| islet of Langerhans | UBERON:0000006 | 97.61 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 97.61 | gold quality |
| bronchus | UBERON:0002185 | 97.54 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 97.48 | gold quality |
| duodenum | UBERON:0002114 | 97.06 | gold quality |
| placenta | UBERON:0001987 | 96.97 | gold quality |
| endometrium epithelium | UBERON:0004811 | 96.85 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 96.75 | gold quality |
| oviduct epithelium | UBERON:0004804 | 96.69 | gold quality |
| caput epididymis | UBERON:0004358 | 96.59 | gold quality |
| trachea | UBERON:0003126 | 96.44 | gold quality |
| pancreas | UBERON:0001264 | 96.30 | gold quality |
| body of pancreas | UBERON:0001150 | 95.86 | gold quality |
| urethra | UBERON:0000057 | 95.57 | gold quality |
| cardiac ventricle | UBERON:0002082 | 95.47 | gold quality |
| nephron tubule | UBERON:0001231 | 95.36 | gold quality |
| heart left ventricle | UBERON:0002084 | 95.36 | gold quality |
| thymus | UBERON:0002370 | 95.34 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 95.20 | gold quality |
| mouth mucosa | UBERON:0003729 | 95.10 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 94.99 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 94.89 | gold quality |
| vena cava | UBERON:0004087 | 94.88 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 94.86 | gold quality |
| minor salivary gland | UBERON:0001830 | 94.39 | gold quality |
| rectum | UBERON:0001052 | 94.38 | gold quality |
| cardiac atrium | UBERON:0002081 | 94.31 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 94.10 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 93.97 | gold quality |
| right atrium auricular region | UBERON:0006631 | 93.90 | gold quality |
| vagina | UBERON:0000996 | 93.75 | gold quality |
| seminal vesicle | UBERON:0000998 | 93.36 | gold quality |
| cauda epididymis | UBERON:0004360 | 93.21 | gold quality |
| renal medulla | UBERON:0000362 | 92.98 | gold quality |
| apex of heart | UBERON:0002098 | 92.76 | gold quality |
| mammary gland | UBERON:0001911 | 92.70 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 92.69 | gold quality |
| periodontal ligament | UBERON:0008266 | 92.65 | gold quality |
| heart | UBERON:0000948 | 92.42 | gold quality |
| liver | UBERON:0002107 | 92.14 | gold quality |
| type B pancreatic cell | CL:0000169 | 92.08 | gold quality |
| kidney epithelium | UBERON:0004819 | 91.68 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 91.66 | gold quality |
| parietal pleura | UBERON:0002400 | 91.63 | gold quality |
| pylorus | UBERON:0001166 | 91.53 | gold quality |
| stromal cell of endometrium | CL:0002255 | 91.46 | gold quality |
| pleura | UBERON:0000977 | 90.80 | gold quality |
| visceral pleura | UBERON:0002401 | 90.30 | gold quality |
| fallopian tube | UBERON:0003889 | 90.28 | gold quality |
| thyroid gland | UBERON:0002046 | 89.73 | gold quality |
| pancreatic ductal cell | CL:0002079 | 89.70 | gold quality |
| kidney | UBERON:0002113 | 89.67 | gold quality |
| endometrium | UBERON:0001295 | 89.29 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 89.12 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 88.75 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 88.73 | gold quality |
| right lobe of liver | UBERON:0001114 | 88.64 | gold quality |
Single-cell (SCXA)
Detected in 17 experiment(s), a significant marker in 15.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8142 | yes | 2121.08 |
| E-HCAD-23 | yes | 1248.30 |
| E-CURD-79 | yes | 884.17 |
| E-MTAB-10662 | yes | 425.70 |
| E-HCAD-1 | yes | 285.73 |
| E-GEOD-124472 | yes | 217.11 |
| E-MTAB-6701 | yes | 119.83 |
| E-CURD-114 | yes | 56.30 |
| E-MTAB-10287 | yes | 44.82 |
| E-HCAD-31 | yes | 26.63 |
| E-HCAD-10 | yes | 25.26 |
| E-MTAB-6678 | yes | 16.98 |
| E-MTAB-9388 | yes | 7.82 |
| E-GEOD-130148 | yes | 5.23 |
| E-MTAB-10596 | no | 3981.02 |
HPA expression
RNA tissue specificity: Tissue enhanced
showing 60 of 78 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM | Protein (IHC) |
|---|---|---|---|
| Skin 1 | tissue | 807.7 | medium |
| Esophagus | tissue | 294.2 | medium |
| Vagina | tissue | 274.5 | high |
| Pancreas | tissue | 105.4 | low |
| Tonsil | tissue | 73.9 | medium |
| Breast | tissue | 61.8 | not detected |
| Heart muscle | tissue | 61.0 | high |
| Placenta | tissue | 59.8 | low |
| Parathyroid gland | tissue | 51.7 | not detected |
| Duodenum | tissue | 49.3 | low |
| Salivary gland | tissue | 48.0 | low |
| Stomach 1 | tissue | 45.7 | low |
| Colon | tissue | 43.2 | not detected |
| Choroid plexus | tissue | 42.3 | |
| Rectum | tissue | 40.7 | low |
| Small intestine | tissue | 39.9 | not detected |
| Liver | tissue | 39.2 | not detected |
| Thyroid gland | tissue | 38.9 | not detected |
| Thymus | tissue | 34.6 | |
| Prostate | tissue | 28.2 | not detected |
| Epididymis | tissue | 26.2 | not detected |
| Superior colliculi | tissue | 22.1 | |
| Kidney | tissue | 20.9 | not detected |
| Retina | tissue | 19.7 | |
| Cervix | tissue | 16.4 | not detected |
| Fallopian tube | tissue | 15.4 | not detected |
| Spinal cord | tissue | 12.7 | |
| Urinary bladder | tissue | 12.3 | low |
| Seminal vesicle | tissue | 11.0 | not detected |
| Pituitary gland | tissue | 8.3 | |
| Gallbladder | tissue | 7.3 | low |
| Appendix | tissue | 6.6 | not detected |
| Adrenal gland | tissue | 6.2 | not detected |
| Lung | tissue | 5.7 | not detected |
| Endometrium 1 | tissue | 5.1 | not detected |
| Periaqueductal gray | tissue | 5.0 | |
| Hippocampus | tissue | 4.9 | not detected |
| Substantia nigra | tissue | 3.9 | |
| Medulla oblongata | tissue | 3.7 | |
| Lymph node | tissue | 3.5 | not detected |
| Skeletal muscle | tissue | 3.2 | not detected |
| Nucleus accumbens | tissue | 3.2 | |
| Spleen | tissue | 3.0 | not detected |
| Smooth muscle | tissue | 2.7 | not detected |
| Hippocampal formation | tissue | 2.7 | |
| Thalamus | tissue | 2.3 | |
| Adipose tissue | tissue | 2.1 | not detected |
| Pons | tissue | 2.0 | |
| Locus coeruleus | tissue | 1.8 | |
| Entorhinal cortex | tissue | 1.8 | |
| Postcentral gyrus | tissue | 1.7 | |
| Ovary | tissue | 1.6 | low |
| Hypothalamus | tissue | 1.5 | |
| Testis | tissue | 1.4 | not detected |
| Midbrain | tissue | 1.1 | |
| Septum | tissue | 1.0 | |
| Olfactory bulb | tissue | 0.9 | |
| Cerebral cortex | tissue | 0.7 | not detected |
| Motor cortex | tissue | 0.7 | |
| Temporal cortex | tissue | 0.7 |
Brain sub-regions (HPA Brain Atlas): detected in 189; highest nTPM — Dorsal spinal cord (12.7), Corticomedial amygdala (9.5), Basal amygdala (8.1), Anterior insular cortex, dorsal (8.0), Hippocampus, CA3 (7.9).
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CTNNB1, LEF1, PKP1, PKP3, SATB1, TCF12
miRNA regulators (miRDB)
Targeting DSP by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
showing 30 of 65 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AK | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AM-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AP-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548AQ-5P | 99.94 | 71.34 | 3426 |
| HSA-MIR-548AR-5P | 99.94 | 71.28 | 3515 |
| HSA-MIR-548AS-5P | 99.94 | 71.22 | 3482 |
| HSA-MIR-548AU-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AY-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548B-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548BB-5P | 99.94 | 71.27 | 3509 |
| HSA-MIR-548C-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548D-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548H-5P | 99.94 | 71.24 | 3488 |
Functional genomics
gnomAD constraint: pLI 1, LOEUF 0.443, missense Z 2.65 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD)
ENST00000379802 splits into 5 regions with different missense tolerance; 0 are missense-constrained. Missense variants in a constrained region (low observed/expected) are more likely to be pathogenic. gnomAD
| Region (GRCh38) | Missense obs / exp | o/e | Constrained |
|---|---|---|---|
| 6:7,541,916–7,570,467 | 646 / 684.3 | 0.94 | no |
| 6:7,570,468–7,571,855 | 81 / 130.5 | 0.62 | no |
| 6:7,571,856–7,583,869 | 1714 / 1844.5 | 0.93 | no |
| 6:7,583,870–7,584,566 | 207 / 281.2 | 0.74 | no |
| 6:7,584,567–7,585,875 | 582 / 555.4 | 1.05 | no |
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map |
Literature-anchored findings (GeneRIF, showing 40)
- Compound heterozygosity for non-sense and mis-sense mutations in desmoplakin underlies skin fragility/woolly hair syndrome. haploinsufficiency (PMID:11841538)
- non-small cell lung carcinoma subtypes have specific patterns of desmoplakin 1 and 2 and cytokeratin 18 gene expression, protein content and biodistribution (PMID:11955647)
- Mutation (S299R) in exon 7 of desmoplakin causes arrhythmogenic right ventricular cardiomyopathy, unlinked to other causes. (PMID:12373648)
- desmoplakin has a role in capillary formation (PMID:15190119)
- terminal tail is responsible for discerning among binding of factors to the armadillo domain (PMID:15381698)
- Naxos disease is not caused by the desmoplakin gene mutation in an arab family. (PMID:15494820)
- the involvement of desmoplakin (DP), plectin, and periplakin in the destruction of epithelial cell integrity ensures the efficient elimination of cytoskeleton, but also provides specificity for selectively targeting individual adhesion molecules (PMID:15500642)
- dominant mutation in desmoplakin that causes left-sided arrhythmogenic left ventricular cardiomyopathywith arrhythmias of left ventricular origin. (PMID:16061754)
- dramatic phenotype, which we named “lethal acantholytic epidermolysis bullosa,” underscores the paramount role of desmoplakin in epidermal integrity (PMID:16175511)
- Our data are consistent with the idea that DP assembles into nascent junctions from both diffusible and particulate pools in a temporally overlapping series of events triggered by cell-cell contact and regulated by actin and DP-IF interactions. (PMID:16365169)
- This is the first description of a phenotype caused by a mutation affecting only one DSP isoform. (PMID:16467215)
- A novel insertion mutation in desmoplakin is associated with early death from cardiomyopathy in a family with dominant striate palmoplantar keratoderma and wooly hair. (PMID:16628197)
- Mutation analysis of 66 arrhythmogenic right ventricular dysplasia/cardiomyopathy patients identified 4 variants in DSP; V30M, Q90R, W233X, and R2834H. A cause and effect relationship between those DSP missense mutations and ARVD/C was extablished. (PMID:16917092)
- Dp may participate in the regulation of keratinocyte cell proliferation by, in part at least, regulating cell cycle progression (PMID:17475244)
- The Ki67+ proliferation index was inversely correlated with desmoplakin and plakophilin-1 during cervical squamous cell carcinogenesis (PMID:17593084)
- Mutations in the desmosome genes were identified in four of the five patients (three with a DSG2 mutation and one with a DSP mutation). Five gene mutations were noted in four patients and all mutations were novel (one patient had a DSG2 double mutation). (PMID:18632414)
- Loss-of-function mutations in the DSP gene can result in a phenotype similar to ectodermal dysplasia-skin fragility syndrome resulting from PKP1 mutations but only DSP pathology is associated with cardiac disease (PMID:19016709)
- Three proteins were significantly elevated in PTB cases: desmoplakin isoform 1, stratifin, and thrombospondin 1 precursor, providing a foundation for further validation in larger patient cohorts. (PMID:19271751)
- Altered DSP expression at transcriptional and protein levels provides prognostic information in human oropharyngeal cancer. (PMID:19386346)
- we describe a combination of DP mutation phenotypes affecting the skin, heart, hair, and teeth (PMID:19924139)
- Lethal acantholytic epidermolysis bullosa (LAEB) is an autosomal recessive disorder caused by mutations in the gene encoding the desmosomal protein, desmoplakin (DSP) (PMID:19945626)
- A novel minor isoform of desmoplakin that is also produced by alternative splicing of the desmoplakin gene, is described. (PMID:20524011)
- Full sequencing of the DSP showed a novel homozygous c.7097 G>A (p.R2366H) mutation in all skin fragility-woolly hair syndrome affected family members. (PMID:20738328)
- Studies identified two mutations in DSG2, four in DSC2, two in DSP, four in JUP and seven in PKP2. (PMID:20864495)
- autosomal-dominant mutations in the DSP gene are associated with hypo/oligodontia in the setting of Carvajal/Naxos syndrome (PMID:20940358)
- SERCA2-deficient cells exhibited up to a 60% reduction in border translocation of desmoplakin (DP), the desmosomal cytolinker protein necessary for intermediate filament (IF) anchorage to sites of robust cell-cell adhesion (PMID:21156808)
- We detected a novel mutations: DSP T1373A and it may be associated with a risk for tachycardia (PMID:21397041)
- A novel nonsense mutation in the desmoplakin gene and the truncated protein which it produces caused left dominant arrhythmogenic cardiomyopathy (PMID:21458130)
- intimate intramolecular association of the SH3 domain with the preceding SR is also observed in plectin, another plakin protein suggesting that the SH3 domain of plakins contributes to the stability and rigidity of this subfamily of SR-containing proteins (PMID:21536047)
- Mutations in desmoplakin protein is associated with cardiomyopathy. (PMID:21756917)
- Case Report: desmoplakin mutation responsible for juvenile biventricular cardiomyopathy with left ventricular non-compaction and acantholytic palmoplantar keratoderma. (PMID:21789513)
- DP Ser2849Gly promotes hyperadhesion (PMID:21993560)
- Palmitate significantly reduces DSP expression, and treatment with insulin restores the lost expression of DSP. (PMID:22132232)
- desmoplakin is a promising candidate for supportive CSF marker to rule out 14-3-3 false positive cases in sporadic Creutzfeldt-Jakob disease differential diagnosis. (PMID:22213780)
- Desmoplakin disease causes connexin mislocalization in the mouse & man preceding overt histological abnormalities resulting in significant alterations in conduction repolarization kinetics prior to morphological changes detectable on cardiac imaging (PMID:22240500)
- desmoplakin I levels, determined within 1-3 months of the first ischemic stroke, could be a biomarker for statin responsiveness against a new vascular event in post-ischemic stroke patients taking statins (PMID:22304020)
- DSP splice variant is crucial for desmosome-mediated adhesion in HaCaT keratinocytes. (PMID:22454510)
- DSP is inactivated in lung cancer by an epigenetic mechanism, increases the sensitivity to anticancer drug-induced apoptosis and has tumor-suppressive function, possibly through inhibition of the Wnt/beta-catenin signaling pathway in NSCLC cells. (PMID:22791817)
- Desmoplakin and pGSK3beta constitute independent good prognostic factors for progression free survival in Ewing Sarcoma patients. (PMID:22898789)
- In two unrelated patients with Naxos-Carvajal syndrome, a single heterozygous de novo mutation in the desmoplakin gene DSP, p.Leu583Pro and p.Thr564Ile, leading to severe phenotypes was found. (PMID:22949226)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | eppk1 | ENSDARG00000096359 |
| mus_musculus | Dsp | ENSMUSG00000054889 |
| rattus_norvegicus | Dsp | ENSRNOG00000013928 |
Paralogs (36): SYNE2 (ENSG00000054654), SPTB (ENSG00000070182), ACTN1 (ENSG00000072110), ACTN2 (ENSG00000077522), DRP2 (ENSG00000102385), SPTBN1 (ENSG00000115306), MACF1 (ENSG00000127603), FLNC (ENSG00000128591), ACTN4 (ENSG00000130402), SYNE1 (ENSG00000131018), MICAL2 (ENSG00000133816), DTNA (ENSG00000134769), MICAL1 (ENSG00000135596), FLNB (ENSG00000136068), SPTBN5 (ENSG00000137877), DTNB (ENSG00000138101), GAS2L3 (ENSG00000139354), DST (ENSG00000151914), UTRN (ENSG00000152818), SPTBN4 (ENSG00000160460), SPTA1 (ENSG00000163554), CLMN (ENSG00000165959), PKHD1 (ENSG00000170927), SPTBN2 (ENSG00000173898), SYNE3 (ENSG00000176438), PLEC (ENSG00000178209), SMTNL2 (ENSG00000188176), FLNA (ENSG00000196924), SPTAN1 (ENSG00000197694), DMD (ENSG00000198947), PKHD1L1 (ENSG00000205038), DYTN (ENSG00000232125), MICAL3 (ENSG00000243156), ACTN3 (ENSG00000248746), EPPK1 (ENSG00000261150), GAS2L2 (ENSG00000270765)
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:109611) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 67 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| abnormal heart morphology | 2 |
| ruffled hair | 2 |
| abnormal epidermal layer morphology | 2 |
| cardiac fibrosis | 2 |
| prolonged QRS complex duration | 2 |
| enlarged heart | 1 |
| abnormal myocardial fiber morphology | 1 |
| sparse hair | 1 |
| enlarged lymph nodes | 1 |
| abnormal epidermis stratum basale morphology | 1 |
| abnormal epidermis stratum spinosum morphology | 1 |
| disheveled coat | 1 |
| abnormal ectoderm development | 1 |
| abnormal endoderm development | 1 |
| decreased embryo size | 1 |
| abnormal embryo turning | 1 |
| abnormal placenta morphology | 1 |
| acanthosis | 1 |
| abnormal hair texture | 1 |
| premature death | 1 |
| abnormal embryonic tissue morphology | 1 |
| abnormal neural tube morphology | 1 |
| abnormal lymph node morphology | 1 |
| impaired ability to fire action potentials | 1 |
| abnormal sciatic nerve morphology | 1 |
+42 more (showing top 25).
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Cricetulus griseus | Q9JI55 | 94.7% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| SNRNP48 | protein-coding | 154007 |
| DSP-AS1 | ncRNA | 101928076 |
| BLOC1S5-TXNDC5 | ncRNA | 100526836 |
| BMP6 | protein-coding | 654 |
| TXNDC5 | protein-coding | 81567 |
Protein
Protein identifiers
Desmoplakin — P15924 (reviewed: P15924)
Alternative names: 250/210 kDa paraneoplastic pemphigus antigen
All UniProt accessions (10): A0A804HL18, A0AAQ5BH17, A0AAQ5BH21, A0AAQ5BH40, A0AAQ5BH43, A0AAQ5BH50, A0AAQ5BH53, A0AAQ5BH65, A0AAQ5BH69, P15924
UniProt curated annotations — full annotation on UniProt →
Function. A component of desmosome cell-cell junctions which are required for positive regulation of cellular adhesion. Critical for cell-cell adhesion in early stage blastocysts and progression through proamniotic cavity formation. Not required for preimplantation morphogenic process in blastocysts. Required for keratin filament anchoring at the desmosome junction and subsequent organization of the keratin intermediate filament network within the cytoplasm. Required for anchoring of desmosomes to the microtubule architecture, via its interaction with NIN. Promotes microtubule-mediated GJA1/CX43 trafficking to cell membranes via its interaction with MAPRE1/EB1, thereby facilitating gap junction intracellular communication. Plays a key role in adhesion and organization of the dermal epithelial barrier. Critical for the maintenance of the neural tube structure following formation and organization of the neuroepithelium. Facilitates outgrowth and repair of motor neuron fibers in regenerating axons following injury, probably by promoting recruitment of a complex containing DSP, CDH2, VIM and JUP to the outgrowth tips. Critical for the normal formation of heart and myocardial tissue during early embryogenesis. Also required for development of vascular capillary structures and intact endothelial cell barriers. Regulates profibrotic gene expression in cardiomyocytes via activation of the MAPK14/p38 MAPK signaling cascade and increase in TGFB1 protein abundance. Maintains cardiac rhythmicity by ensuring correct cell-cell adhesion within the sinoatrial node, via stabilization of protein components of both desmosome and Gap junctions. Involved in maintaining the protein stability and recruitment of GJA1 to functional gap junctions, via inhibition of KRAS-mediated MAPK1/MAPK3 phosphorylation of GJA1. Negative regulator of cell cycle progression and differentiation in keratinocytes, potentially via inhibition of MAPK and phosphoinositide-3-kinase (PI3K) signaling pathways. Mediates the interaction between the desmosome and COP9 signalosome complex (CSN) protein complex. As a result of this interaction, promotes keratinocyte differentiation via deneddylation of EGFR resulting in a reduction in EGFR protein stabilization and translocation away from the cell membrane. Required for the maintenance of protein abundance of desmosome junction components DSG1, DSG2, DSC2, DSC3, PKP1, PKP2 and PKP3. Required for the survival and maintenance of germ cells in the gonads during embryonic development. Binds to telomere DNA (via C-terminus) and acts to prevent telomere damage and maintain telomere length via its interaction with TRF2.
Subunit / interactions. Homodimer. Identified in a complex containing at least DSP, JUP, VIM and CDH2; the complex is more abundant following crush injury in regenerating motor neurons and may promote axon outgrowth and motor fiber repair. Interacts with COL17A1 (via cytoplasmic region). Interacts with DSC2. Interacts with PKP2. Interacts (via head domain) with PKP1. Interacts weakly with TMEM65. Interacts with NIN: the interaction facilitates recruitment of NIN to desmosome cell-cell junctions. Interacts with TRF2 in the nucleus; the interaction is required for DSP telomere binding. Interacts (via N-terminus) with MAPRE1/EB1; the interaction stabilizes microtubules at cell-cell contacts and facilitates GJA1 trafficking to gap junctions. Interacts with JUP. Interacts with intermediate filament proteins. Interacts (via C-terminus) with COPS3; facilitates the interaction between the desmosome and the COP9 signalosome complex (CSN), the interaction acts to mediate EGFR signaling and keratinocyte differentiation.
Subcellular location. Cell projection. Axon. Cell junction. Desmosome. Cell membrane. Cytoplasm. Nucleus.
Tissue specificity. Expressed in oral mucosa (at protein level). Expressed in arrector pili muscle (at protein level). Expressed in the heart (at protein level). Expressed in keratinocytes of the skin (at protein level). Apparently an obligate constituent of all desmosomes. Resides predominantly in tissues and cells of stratified origin.
Post-translational modifications. Methylation by PRMT1 promotes GSK3B-mediated phosphorylation cascade of multiple serine residues at the C-terminus resulting in trafficking to desmosome cell-cell junctions. Phosphorylation by GSK3B occurs sequentially from Ser-2849 along multiple serine residue at the C-terminus. Hyperphosphorylation by GSK3B results in recruitment to desmosome cell-cell junction and promotion of intercellular adhesion. Phosphorylation at Ser-2849 increases association with intermediate filament cytokeratin, potentially facilitating interaction between desmosome junctions and intermediate filament architecture.
Disease relevance. Keratoderma, palmoplantar, striate 2 (SPPK2) [MIM:612908] A dermatological disorder characterized by thickening of the skin on the palms (linear pattern) and the soles (island-like pattern) and flexor aspect of the fingers. Abnormalities of the nails, the teeth and the hair are rarely present. The disease is caused by variants affecting the gene represented in this entry. Cardiomyopathy, dilated, with woolly hair and keratoderma (DCWHK) [MIM:605676] An autosomal recessive cardiocutaneous syndrome characterized by a generalized striate keratoderma particularly affecting the palmoplantar epidermis, woolly hair, and dilated left ventricular cardiomyopathy. The disease is caused by variants affecting the gene represented in this entry. Arrhythmogenic right ventricular dysplasia, familial, 8 (ARVD8) [MIM:607450] A congenital heart disease characterized by infiltration of adipose and fibrous tissue into the right ventricle and loss of myocardial cells, resulting in ventricular and supraventricular arrhythmias. The disease is caused by variants affecting the gene represented in this entry. Epidermolysis bullosa, lethal acantholytic (EBLA) [MIM:609638] A form of epidermolysis bullosa characterized by severe fragility of skin and mucous membranes. The phenotype is lethal in the neonatal period because of immense transcutaneous fluid loss. Typical features include universal alopecia, neonatal teeth, and nail loss. Histopathology of the skin shows suprabasal clefting and acantholysis throughout the spinous layer, mimicking pemphigus. The disease is caused by variants affecting the gene represented in this entry. Erythroderma, congenital, with palmoplantar keratoderma, hypotrichosis, and hyper IgE (EPKHE) [MIM:615508] A syndrome characterized by severe dermatitis, multiple allergies and metabolic wasting. Clinical features include erythroderma, yellowish papules and plaques arranged at the periphery of the palms, along the fingers and over weight-bearing areas of the feet, skin erosions and scaling, and hypotrichosis. Additionally, patients manifest severe food allergies, elevated immunoglobulin E (IgE) levels and recurrent infections with marked metabolic wasting. The disease is caused by variants affecting the gene represented in this entry. Cardiomyopathy, dilated, with woolly hair, keratoderma, and tooth agenesis (DCWHKTA) [MIM:615821] A cardiocutaneous syndrome characterized by biventricular dilated cardiomyopathy, hyperkeratosis, woolly hair, palmoplantar keratoderma, and hypo/oligodontia. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The N-terminal region is required for localization to the desmosomal plaque and interacts with the N-terminal region of PKP1.
Miscellaneous. Minor isoform.
Similarity. Belongs to the plakin or cytolinker family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P15924-1 | DPI, DP1 | yes |
| P15924-2 | DPII, DP2 | |
| P15924-3 | DSPIa |
RefSeq proteins (4): NP_001008844, NP_001305963, NP_001393520, NP_004406* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001101 | Plectin_repeat | Repeat |
| IPR001452 | SH3_domain | Domain |
| IPR018159 | Spectrin/alpha-actinin | Repeat |
| IPR035915 | Plakin_repeat_sf | Homologous_superfamily |
| IPR041573 | Desmoplakin_Spectrin-like | Domain |
| IPR041615 | Desmoplakin_SH3 | Domain |
| IPR043197 | Plakin | Family |
Pfam: PF00681, PF17902, PF18373, PF21019, PF27015
UniProt features (257 total): sequence variant 63, helix 52, strand 34, modified residue 34, repeat 24, turn 20, region of interest 12, mutagenesis site 6, sequence conflict 3, compositionally biased region 3, splice variant 2, chain 1, coiled-coil region 1, short sequence motif 1, domain 1
Structure
Experimental structures (PDB)
4 structures by resolution:
| PDB | Title | Method | Resolution (Å) |
|---|---|---|---|
| 1LM5 | Structures of two intermediate filament-binding fragments of desmoplakin reveal a unique … | X-RAY DIFFRACTION | 1.8 |
| 5DZZ | Structural characterization of intermediate filaments binding domain of desmoplakin | X-RAY DIFFRACTION | 2.6 |
| 3R6N | Crystal structure of a rigid four spectrin repeat fragment of the human desmoplakin … | X-RAY DIFFRACTION | 2.95 |
| 1LM7 | Structures of two intermediate filament-binding fragments of desmoplakin reveal a unique … | X-RAY DIFFRACTION | 3 |
Predicted structure (AlphaFold)
No AlphaFold model available for P15924 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Human Protein Atlas
Protein class: Transporters, Accessory Factors Involved in Transport, Predicted intracellular proteins, Plasma proteins, Disease related genes, Potential drug targets, Human disease related genes, Congenital malformations, Congenital malformations of the circulatory system, Congenital malformations of skin
Protein evidence: Evidence at protein level
Subcellular location (HPA, imaging): cell junctions
Antibody reliability (HPA): IH enhanced · IF supported
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (34)
| Type | Positions |
|---|---|
| Phosphoserine | 22, 53, 165, 166, 176, 1658, 1708, 2024, 2207, 2209, 2225, 2810, 2815, 2820, 2821, 2825, 2833, 2835, 2837, 2839, 2841, 2843, 2845, 2849, 2868 |
| Phosphotyrosine | 56, 2817 |
| Phosphothreonine | 61, 2853 |
| Asymmetric dimethylarginine | 2826, 2834, 2838, 2846 |
| Omega-n-methylarginine | 2847 |
Mutagenesis-validated functional residues (6)
| Position | Phenotype |
|---|---|
| 470 | no observable change in the secondary structure folding. |
| 808 | reduced thermal stability of protein. no observable change in secondary structure folding. |
| 1122–1126 | abolishes localization to the nucleus and binding to telomeres. |
| 2845 | abolishes gsk3b phosphorylation of multiple downstream sites within the c-terminus and decreases interaction with gsk3b. |
| 2849 | decreases cell-cell adhesion when under mechanical stress. |
| 2853 | no effect on gsk3b-mediated phosphorylation of multiple downstream sites within the c-terminus. |
Function
Pathways and Gene Ontology
Reactome pathways
6 curated (TAS) of 17; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
17 pathways:
| ID | Pathway | Evidence |
|---|---|---|
| R-HSA-351906 | Apoptotic cleavage of cell adhesion proteins | curated |
| R-HSA-6809371 | Formation of the cornified envelope | curated |
| R-HSA-6805567 | Keratinization | curated |
| R-HSA-6798695 | Neutrophil degranulation | curated |
| R-HSA-9696273 | RND1 GTPase cycle | curated |
| R-HSA-9696264 | RND3 GTPase cycle | curated |
| R-HSA-109581 | Apoptosis | — |
| R-HSA-111465 | Apoptotic cleavage of cellular proteins | — |
| R-HSA-75153 | Apoptotic execution phase | — |
| R-HSA-1266738 | Developmental Biology | — |
| R-HSA-168256 | Immune System | — |
| R-HSA-168249 | Innate Immune System | — |
| R-HSA-5357801 | Programmed Cell Death | — |
| R-HSA-9012999 | RHO GTPase cycle | — |
| R-HSA-162582 | Signal Transduction | — |
| R-HSA-194315 | Signaling by Rho GTPases | — |
| R-HSA-9716542 | Signaling by Rho GTPases, Miro GTPases and RHOBTB3 | — |
MSigDB gene sets: 541 (showing top):
BROWNE_HCMV_INFECTION_30MIN_DN, GOBP_CARDIAC_CHAMBER_DEVELOPMENT, MODULE_52, GOBP_EPITHELIUM_DEVELOPMENT, LEE_NEURAL_CREST_STEM_CELL_DN, GOBP_BUNDLE_OF_HIS_CELL_TO_PURKINJE_MYOCYTE_COMMUNICATION, BROWNE_HCMV_INFECTION_6HR_DN, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_MUSCLE_TISSUE_DEVELOPMENT, GOBP_INTERMEDIATE_FILAMENT_BASED_PROCESS, GOBP_CIRCULATORY_SYSTEM_PROCESS, GOBP_INTERMEDIATE_FILAMENT_ORGANIZATION, GOBP_CARDIAC_CHAMBER_MORPHOGENESIS, MIDORIKAWA_AMPLIFIED_IN_LIVER_CANCER, JAEGER_METASTASIS_DN
GO Biological Process (26): desmosome organization (GO:0002934), ventricular compact myocardium morphogenesis (GO:0003223), epidermis development (GO:0008544), peptide cross-linking (GO:0018149), keratinocyte differentiation (GO:0030216), wound healing (GO:0042060), skin development (GO:0043588), intermediate filament cytoskeleton organization (GO:0045104), intermediate filament organization (GO:0045109), bundle of His cell-Purkinje myocyte adhesion involved in cell communication (GO:0086073), regulation of heart rate by cardiac conduction (GO:0086091), epithelial cell-cell adhesion (GO:0090136), cell-cell adhesion (GO:0098609), regulation of ventricular cardiac muscle cell action potential (GO:0098911), protein localization to cell-cell junction (GO:0150105), telomere maintenance (GO:0000723), desmosome maintenance (GO:0002160), germ cell development (GO:0007281), neural tube patterning (GO:0021532), regulation of protein localization (GO:0032880), negative regulation of cell differentiation (GO:0045596), negative regulation of cell cycle (GO:0045786), protein stabilization (GO:0050821), establishment of endothelial barrier (GO:0061028), positive regulation of protein localization (GO:1903829), positive regulation of vasculogenesis (GO:2001214)
GO Molecular Function (8): DNA binding (GO:0003677), RNA binding (GO:0003723), protein kinase C binding (GO:0005080), structural molecule activity (GO:0005198), structural constituent of cytoskeleton (GO:0005200), cell adhesive protein binding involved in bundle of His cell-Purkinje myocyte communication (GO:0086083), scaffold protein binding (GO:0097110), protein binding (GO:0005515)
GO Cellular Component (16): cornified envelope (GO:0001533), nucleus (GO:0005634), cytoplasm (GO:0005737), intermediate filament (GO:0005882), plasma membrane (GO:0005886), adherens junction (GO:0005912), fascia adherens (GO:0005916), intercalated disc (GO:0014704), basolateral plasma membrane (GO:0016323), cell junction (GO:0030054), desmosome (GO:0030057), axon (GO:0030424), extracellular exosome (GO:0070062), ficolin-1-rich granule membrane (GO:0101003), cytoskeleton (GO:0005856), cell-cell junction (GO:0005911)
Reactome top-level categories
12 top-level categories:
| Category | Pathways |
|---|---|
| RHO GTPase cycle | 2 |
| Apoptotic cleavage of cellular proteins | 1 |
| Innate Immune System | 1 |
| Developmental Biology | 1 |
| Keratinization | 1 |
| Programmed Cell Death | 1 |
| Apoptotic execution phase | 1 |
| Immune System | 1 |
| Signaling by Rho GTPases, Miro GTPases and RHOBTB3 | 1 |
| Apoptosis | 1 |
| Signaling by Rho GTPases | 1 |
| Signal Transduction | 1 |
GO top-level categories
showing 60 of 66 GO namespaces:
| Category | Terms |
|---|---|
| cell-cell junction | 3 |
| cytoskeleton organization | 2 |
| nucleic acid binding | 2 |
| cellular anatomical structure | 2 |
| cell-cell junction organization | 1 |
| ventricular cardiac muscle tissue morphogenesis | 1 |
| tissue development | 1 |
| animal gross anatomical part developmental process | 1 |
| protein modification process | 1 |
| epidermal cell differentiation | 1 |
| skin development | 1 |
| response to wounding | 1 |
| tissue regeneration | 1 |
| animal organ development | 1 |
| intermediate filament-based process | 1 |
| intermediate filament cytoskeleton organization | 1 |
| supramolecular fiber organization | 1 |
| heterotypic cell-cell adhesion | 1 |
| cardiac muscle cell-cardiac muscle cell adhesion | 1 |
| bundle of His cell to Purkinje myocyte communication | 1 |
| regulation of heart rate | 1 |
| cardiac conduction | 1 |
| cell-cell adhesion | 1 |
| cell adhesion | 1 |
| regulation of cardiac muscle cell contraction | 1 |
| ventricular cardiac muscle cell action potential | 1 |
| regulation of cardiac muscle cell action potential | 1 |
| protein localization to cell junction | 1 |
| DNA metabolic process | 1 |
| telomere organization | 1 |
| desmosome organization | 1 |
| cell-cell junction maintenance | 1 |
| developmental process involved in reproduction | 1 |
| gamete generation | 1 |
| cellular process involved in reproduction in multicellular organism | 1 |
| cell development | 1 |
| regionalization | 1 |
| neural tube development | 1 |
| intracellular protein localization | 1 |
| regulation of localization | 1 |
| protein kinase binding | 1 |
| molecular_function | 1 |
| structural molecule activity | 1 |
| cytoskeleton | 1 |
| bundle of His cell-Purkinje myocyte adhesion involved in cell communication | 1 |
| protein binding involved in heterotypic cell-cell adhesion | 1 |
| protein binding | 1 |
| binding | 1 |
| plasma membrane | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| intermediate filament cytoskeleton | 1 |
| polymeric cytoskeletal fiber | 1 |
| membrane | 1 |
| cell periphery | 1 |
| intercalated disc | 1 |
| cell-cell contact zone | 1 |
| basal plasma membrane | 1 |
| plasma membrane region | 1 |
| neuron projection | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 16 of 50 annotations. The rest are phylogenetic / computational / electronic (IEA).
16 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| bundle of His cell-Purkinje myocyte adhesion involved in cell communication | BP | mutant phenotype |
| epithelial cell-cell adhesion | BP | mutant phenotype |
| keratinocyte differentiation | BP | direct assay |
| peptide cross-linking | BP | direct assay |
| regulation of heart rate by cardiac conduction | BP | mutant phenotype |
| regulation of ventricular cardiac muscle cell action potential | BP | mutant phenotype |
| cell junction | CC | direct assay |
| cornified envelope | CC | direct assay |
| desmosome | CC | direct assay |
| extracellular exosome | CC | high-throughput assay |
| intercalated disc | CC | direct assay |
| nucleus | CC | high-throughput assay |
| plasma membrane | CC | direct assay |
| RNA binding | MF | high-throughput assay |
| protein kinase C binding | MF | physical interaction |
| scaffold protein binding | MF | physical interaction |
Protein interactions and networks
STRING
showing 15 of 1,627 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DSP | PKP2 | Q99959 | 970 |
| DSP | PKP1 | Q13835 | 935 |
| DSP | DSG2 | Q14126 | 929 |
| DSP | JUP | P14923 | 929 |
| DSP | DSC2 | Q02487 | 914 |
| DSP | DSG1 | Q02413 | 897 |
| DSP | DSG3 | P32926 | 824 |
| DSP | PKP4 | Q99569 | 823 |
| DSP | CDH17 | Q12864 | 793 |
| DSP | DSC3 | Q14574 | 745 |
| DSP | KRT8 | P05787 | 743 |
| DSP | TMEM43 | Q9BTV4 | 716 |
| DSP | GJA1 | P17302 | 714 |
| DSP | KRT18 | P05783 | 714 |
| DSP | DSC1 | Q08554 | 684 |
IntAct
Human interaction partners of DSP in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
showing 30 of 38 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| MAPRE1 | physical association | 0.630 | 7 |
| JUP | physical association | 0.570 | 3 |
| FES | physical association | 0.560 | 2 |
| DSG1 | direct interaction | 0.440 | 2 |
| PECAM1 | colocalization | 0.430 | 2 |
| PKP2 | proximity | 0.430 | 2 |
| PKP1 | physical association | 0.400 | 2 |
| DSC2 | physical association | 0.400 | 1 |
| H1-5 | physical association | 0.400 | 1 |
| H2BC9 | physical association | 0.400 | 1 |
| HMGA1 | physical association | 0.400 | 1 |
| HSPA5 | physical association | 0.400 | 1 |
| ORF17 | physical association | 0.400 | 1 |
| YWHAZ | physical association | 0.400 | 1 |
| BECN1 | physical association | 0.370 | 1 |
| CLK4 | association | 0.350 | 1 |
| JAK1 | association | 0.350 | 1 |
| KRT18 | association | 0.350 | 1 |
| MTMR9 | association | 0.350 | 1 |
| SEC22A | association | 0.350 | 1 |
| PKP4 | colocalization | 0.270 | 1 |
| AKR1B1 | physical association | 0.000 | 1 |
| DISC1 | physical association | 0.000 | 1 |
| ENO3 | physical association | 0.000 | 1 |
| GH1 | physical association | 0.000 | 1 |
| IKBKE | physical association | 0.000 | 1 |
| MAP3K8 | physical association | 0.000 | 1 |
| MYC | physical association | 0.000 | 1 |
| NFKB2 | physical association | 0.000 | 1 |
| NFKBIB | physical association | 0.000 | 1 |
BioGRID (525 interactions; top human partners by supporting records): JUP (Affinity Capture-MS; 5 records), VIM (Proximity Label-MS; 4 records), YAP1 (Affinity Capture-MS; 4 records), CUL3 (Affinity Capture-MS; 3 records), KRT1 (Co-fractionation; 3 records), KRT18 (Proximity Label-MS; 3 records), MYC (Affinity Capture-MS; 3 records), PCM1 (Affinity Capture-MS; 3 records), PKP1 (Affinity Capture-MS; 3 records), PTPRD (Affinity Capture-MS; 3 records), TRIM47 (Affinity Capture-MS; 3 records), ANLN (Affinity Capture-MS; 2 records), ARAF (Affinity Capture-MS; 2 records), BTRC (Affinity Capture-MS; 2 records), C6orf141 (Affinity Capture-MS; 2 records)
SIGNOR signaling
2 signaling interactions:
| A | Effect | B | Mechanism |
|---|---|---|---|
| PRKACA | “down-regulates activity” | DSP | phosphorylation |
| PKP2 | “up-regulates quantity by stabilization” | DSP | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 38 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Formation of the cornified envelope | 7 | 18.6× | 3e-05 |
| Keratinization | 7 | 11.8× | 3e-04 |
| Cytokine Signaling in Immune system | 7 | 8.7× | 2e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cell-cell adhesion | 7 | 19.2× | 3e-05 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 1 cancer types — NPC.
intOGen’s role is a computational inference from cohort mutation patterns and may diverge from the gene’s curated/literature role; read it alongside the evidence above.
Genetic variants
Variant evidence for DSP: 6,156 ClinVar records (723 pathogenic / likely pathogenic); 33 GWAS associations. Per-variant detail is on Sugi Variant.
ClinVar
6,156 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 512 |
| Likely pathogenic | 211 |
| Uncertain significance | 2682 |
| Likely benign | 1598 |
| Benign | 117 |
Top pathogenic / likely-pathogenic (15)
Showing the 15 best-reviewed of 723 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.
| Variant ID | HGVS | Classification | Review | Submitters |
|---|---|---|---|---|
| 44914 | NM_004415.4(DSP):c.4531C>T (p.Gln1511Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 9 |
| 199923 | NM_004415.4(DSP):c.3735_3741dup (p.Asp1248fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 8 |
| 16844 | NM_004415.4(DSP):c.6091_6092del (p.Leu2031fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 7 |
| 222582 | NM_004415.4(DSP):c.5851C>T (p.Arg1951Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 7 |
| 1425499 | NM_004415.4(DSP):c.448C>T (p.Arg150Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 7 |
| 44928 | NM_004415.4(DSP):c.5428C>T (p.Gln1810Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 6 |
| 199890 | NM_004415.4(DSP):c.5212C>T (p.Arg1738Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 6 |
| 44852 | NM_004415.4(DSP):c.1146del (p.Phe382fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 5 |
| 451211 | NM_004415.4(DSP):c.250C>T (p.Arg84Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 5 |
| 836231 | NM_004415.4(DSP):c.1897C>T (p.Gln633Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 5 |
| 16837 | NM_004415.4(DSP):c.7623del (p.Lys2542fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 4 |
| 264512 | NM_004415.4(DSP):c.3195C>G (p.Tyr1065Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 4 |
| 405223 | NM_004415.4(DSP):c.5745dup (p.Lys1916Ter) | Pathogenic | criteria provided, multiple submitters, no conflicts | 4 |
| 464956 | NM_004415.4(DSP):c.1060_1061del (p.Leu354fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 4 |
| 464964 | NM_004415.4(DSP):c.465del (p.Ile156fs) | Pathogenic | criteria provided, multiple submitters, no conflicts | 4 |
Per-variant reference — Sugi Variant
Explore DSP’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.
SpliceAI
Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 44 predictions of 1,014):
| Position(s) | Effect | Δscore | Sites |
|---|---|---|---|
| 6:7542086–7542087 | donor_loss | 1.0000 | 5 |
| 6:7555707 | acceptor_gain | 1.0000 | |
| 6:7555716–7555717 | acceptor_loss | 1.0000 | 6 |
| 6:7555821–7555822 | donor_loss | 1.0000 | 3 |
| 6:7558114–7558115 | acceptor_loss | 1.0000 | 5 |
| 6:7558265–7558266 | donor_loss | 1.0000 | 4 |
| 6:7562650–7562651 | acceptor_loss | 1.0000 | 6 |
| 6:7562781–7562782 | donor_loss | 1.0000 | 5 |
| 6:7563734–7563735 | acceptor_loss | 1.0000 | 4 |
| 6:7563787–7563788 | donor_loss | 1.0000 | 5 |
AlphaMissense
6,100 missense substitutions predicted likely pathogenic (of 19,069 scored), across 1,810 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| M316 | 9 | 0.982 | 0.999 |
| M2354 | 9 | 0.894 | 0.993 |
| M2278 | 9 | 0.893 | 0.991 |
| M2477 | 9 | 0.874 | 0.991 |
| M503 | 9 | 0.873 | 0.979 |
| M284 | 9 | 0.803 | 0.942 |
| H371 | 8 | 0.994 | 0.999 |
| N2423 | 8 | 0.991 | 0.998 |
| H2363 | 8 | 0.989 | 0.997 |
| D2417 | 8 | 0.987 | 0.999 |
| N375 | 8 | 0.985 | 0.998 |
| D2379 | 8 | 0.984 | 0.998 |
| F2416 | 8 | 0.984 | 0.999 |
| H341 | 8 | 0.982 | 0.999 |
| F2415 | 8 | 0.982 | 1.000 |
| D2643 | 8 | 0.973 | 0.996 |
| D2411 | 8 | 0.970 | 0.989 |
| D2136 | 8 | 0.967 | 0.994 |
| D556 | 8 | 0.962 | 0.991 |
| D2521 | 8 | 0.962 | 0.993 |
HPA cancer prognostics
RNA cancer specificity: Cancer enhanced (Head and Neck Squamous Cell Carcinoma)
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
2 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Kidney Renal Clear Cell Carcinoma (TCGA) | favorable | 3.33e-05 |
| Kidney Renal Clear Cell Carcinoma (validation) | favorable | 0.000983 |
Disease associations
OMIM: gene MIM:125647 | disease phenotypes: MIM:605676, MIM:607450, MIM:615821, MIM:107970, MIM:607655, MIM:612908, MIM:609638, MIM:620415, MIM:609040, MIM:115200, MIM:604145, MIM:192500, MIM:113900
GenCC curated gene-disease
12 curated gene-disease records:
| Disease | Classification | Inheritance | Records |
|---|---|---|---|
| arrhythmogenic cardiomyopathy with wooly hair and keratoderma | Definitive | Autosomal dominant | 5 |
| skin fragility-woolly hair-palmoplantar keratoderma syndrome | Definitive | Autosomal recessive | 4 |
| keratosis palmoplantaris striata 2 | Definitive | Autosomal dominant | 3 |
| arrhythmogenic right ventricular dysplasia 8 | Definitive | Autosomal dominant | 3 |
| lethal acantholytic epidermolysis bullosa | Strong | Autosomal recessive | 4 |
| cardiomyopathy, dilated, with wooly hair, keratoderma, and tooth agenesis | Strong | Autosomal dominant | 3 |
| neurodevelopmental disorder | Moderate | Autosomal dominant | |
| familial isolated dilated cardiomyopathy | Supportive | Autosomal dominant | |
| severe dermatitis-multiple allergies-metabolic wasting syndrome | Supportive | Autosomal recessive | |
| striate palmoplantar keratoderma | Supportive | Autosomal dominant | |
| hypertrophic cardiomyopathy | Disputed Evidence | Autosomal dominant | |
| familial hypertrophic cardiomyopathy | Disputed Evidence | Autosomal dominant |
ClinGen Gene-Disease Validity
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
2 validity classifications:
| Disease | Classification | Inheritance |
|---|---|---|
| hypertrophic cardiomyopathy | Disputed | AD |
| arrhythmogenic cardiomyopathy with wooly hair and keratoderma | Definitive | AD |
Genomics England panels (PanelApp)
Clinical diagnostic gene panels including this gene (14 panels, 14 green/diagnostic-grade). Confidence: green = diagnostic, amber = moderate.
14 panels:
| Panel | Rating |
|---|---|
| Arrhythmogenic right ventricular cardiomyopathy | green |
| DDG2P | green |
| Dilated Cardiomyopathy and conduction defects | green |
| Dilated and arrhythmogenic cardiomyopathy | green |
| Epidermolysis bullosa | green |
| Epidermolysis bullosa and congenital skin fragility | green |
| Fetal anomalies | green |
| Ichthyosis and erythrokeratoderma | green |
| Paediatric disorders | green |
| Paediatric or syndromic cardiomyopathy | green |
| Palmoplantar keratoderma and erythrokeratodermas | green |
| Palmoplantar keratodermas | green |
| Sudden unexplained death or survivors of a cardiac event | green |
| Unexplained death in infancy and sudden unexplained death in childhood | green |
Mondo (27): arrhythmogenic cardiomyopathy with wooly hair and keratoderma (MONDO:0011581), arrhythmogenic right ventricular dysplasia 8 (MONDO:0011831), cardiomyopathy, dilated, with wooly hair, keratoderma, and tooth agenesis (MONDO:0014355), familial isolated arrhythmogenic right ventricular dysplasia (MONDO:0016342), cardiomyopathy (MONDO:0004994), ventricular tachycardia (MONDO:0005477), skin fragility-woolly hair-palmoplantar keratoderma syndrome (MONDO:0011882), arrhythmogenic right ventricular cardiomyopathy (MONDO:0016587), dilated cardiomyopathy (MONDO:0005021), myocarditis (MONDO:0004496), keratosis palmoplantaris striata 2 (MONDO:0013034), lethal acantholytic epidermolysis bullosa (MONDO:0012323), woolly hair-skin fragility syndrome (MONDO:0957307), arrhythmogenic right ventricular dysplasia 9 (MONDO:0012180), dilated cardiomyopathy 1A (MONDO:0007269), cardiac rhythm disease (MONDO:0007263), dilated cardiomyopathy 1G (MONDO:0011400), ventricular fibrillation (MONDO:0000190), long QT syndrome 1 (MONDO:0100316), non-compaction cardiomyopathy (MONDO:0005418), progressive familial heart block (MONDO:0019490), hypertrophic cardiomyopathy (MONDO:0005045), (MONDO:0015470), severe dermatitis-multiple allergies-metabolic wasting syndrome (MONDO:0014218), striate palmoplantar keratoderma (MONDO:0018865), familial hypertrophic cardiomyopathy (MONDO:0024573), neurodevelopmental disorder (MONDO:0700092)
Orphanet (13): Inherited isolated arrhythmogenic cardiomyopathy (Orphanet:217656), Erythrokeratodermia-cardiomyopathy syndrome (Orphanet:476096), Carvajal syndrome (Orphanet:65282), Rare cardiomyopathy (Orphanet:167848), Skin fragility-woolly hair-palmoplantar keratoderma syndrome (Orphanet:293165), Inherited arrhythmogenic cardiomyopathy (Orphanet:247), Dilated cardiomyopathy (Orphanet:217604), Lethal acantholytic erosive disorder (Orphanet:158687), Familial dilated cardiomyopathy with conduction defect due to LMNA mutation (Orphanet:300751), Familial isolated dilated cardiomyopathy (Orphanet:154), Romano-Ward syndrome (Orphanet:101016), Congenital long QT syndrome (Orphanet:768), Hereditary progressive cardiac conduction defect (Orphanet:871)
HPO phenotypes
showing 60 of 110 phenotypes (HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000164 | Abnormality of the dentition |
| HP:0000175 | Cleft palate |
| HP:0000377 | Abnormal pinna morphology |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000561 | Absent eyelashes |
| HP:0000653 | Sparse eyelashes |
| HP:0000695 | Natal tooth |
| HP:0000924 | Abnormality of the skeletal system |
| HP:0000962 | Hyperkeratosis |
| HP:0000969 | Edema |
| HP:0000972 | Palmoplantar hyperkeratosis |
| HP:0000982 | Palmoplantar keratoderma |
| HP:0000989 | Pruritus |
| HP:0001030 | Fragile skin |
| HP:0001036 | Parakeratosis |
| HP:0001057 | Aplasia cutis congenita |
| HP:0001063 | Acrocyanosis |
| HP:0001159 | Syndactyly |
| HP:0001233 | 2-3 finger cutaneous syndactyly |
| HP:0001279 | Syncope |
| HP:0001508 | Failure to thrive |
| HP:0001511 | Intrauterine growth retardation |
| HP:0001562 | Oligohydramnios |
| HP:0001595 | Abnormal hair morphology |
| HP:0001596 | Alopecia |
| HP:0001597 | Abnormal nail morphology |
| HP:0001626 | Abnormality of the cardiovascular system |
| HP:0001635 | Congestive heart failure |
| HP:0001638 | Cardiomyopathy |
| HP:0001640 | Cardiomegaly |
| HP:0001644 | Dilated cardiomyopathy |
| HP:0001645 | Sudden cardiac death |
| HP:0001663 | Ventricular fibrillation |
| HP:0001727 | Thromboembolic stroke |
| HP:0001798 | Anonychia |
| HP:0001802 | Absent toenail |
| HP:0001808 | Fragile nails |
| HP:0001817 | Absent fingernail |
| HP:0001820 | Leukonychia |
| HP:0001836 | Camptodactyly of toe |
| HP:0001852 | Sandal gap |
| HP:0002020 | Gastroesophageal reflux |
| HP:0002110 | Bronchiectasis |
| HP:0002206 | Pulmonary fibrosis |
| HP:0002223 | Absent eyebrow |
| HP:0002224 | Woolly hair |
| HP:0002289 | Alopecia universalis |
| HP:0002298 | Absent hair |
| HP:0002875 | Exertional dyspnea |
| HP:0002878 | Respiratory failure |
| HP:0003198 | Myopathy |
| HP:0003457 | EMG abnormality |
| HP:0003546 | Exercise intolerance |
| HP:0003577 | Congenital onset |
| HP:0003621 | Juvenile onset |
| HP:0003811 | Neonatal death |
| HP:0004057 | Mitten deformity |
| HP:0004209 | Clinodactyly of the 5th finger |
GWAS associations
showing 30 of 33 associations:
| Study | Trait | p-value |
|---|---|---|
| GCST009758_16 | Idiopathic pulmonary fibrosis | 3e-30 |
| GCST004986_3 | Idiopathic pulmonary fibrosis | 8e-28 |
| GCST007431_84 | Lung function (FEV1/FVC) | 7e-23 |
| GCST001968_3 | Interstitial lung disease | 1e-19 |
| GCST010321_182 | PR interval | 3e-16 |
| GCST010320_37 | PR interval | 1e-15 |
| GCST010796_4378 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5e-10 |
| GCST010796_4380 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5e-10 |
| GCST010796_4382 | Electrocardiogram morphology (amplitude at temporal datapoints) | 6e-10 |
| GCST010796_4379 | Electrocardiogram morphology (amplitude at temporal datapoints) | 7e-10 |
| GCST010796_4381 | Electrocardiogram morphology (amplitude at temporal datapoints) | 7e-10 |
| GCST010796_4385 | Electrocardiogram morphology (amplitude at temporal datapoints) | 9e-10 |
| GCST010796_4386 | Electrocardiogram morphology (amplitude at temporal datapoints) | 9e-10 |
| GCST010796_4387 | Electrocardiogram morphology (amplitude at temporal datapoints) | 9e-10 |
| GCST010796_4383 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1e-9 |
| GCST010796_4384 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1e-9 |
| GCST010796_4388 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1e-9 |
| GCST004147_22 | Chronic obstructive pulmonary disease | 4e-9 |
| GCST010796_4389 | Electrocardiogram morphology (amplitude at temporal datapoints) | 9e-9 |
| GCST010796_4397 | Electrocardiogram morphology (amplitude at temporal datapoints) | 9e-9 |
| GCST010796_4391 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1e-8 |
| GCST010796_894 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1e-8 |
| GCST007429_138 | Lung function (FVC) | 2e-8 |
| GCST010796_4394 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2e-8 |
| GCST010796_4396 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2e-8 |
| GCST010796_4398 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2e-8 |
| GCST010796_4392 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3e-8 |
| GCST010796_4393 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3e-8 |
| GCST010796_4395 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3e-8 |
| GCST003818_17 | Resting heart rate | 2e-7 |
EFO canonical traits (from GWAS)
7 canonical traits:
| EFO ID | Trait name |
|---|---|
| EFO:0007681 | triglyceride change measurement |
| EFO:0000768 | idiopathic pulmonary fibrosis |
| EFO:0004312 | vital capacity |
| EFO:0004713 | FEV/FVC ratio |
| EFO:0008354 | cognitive function measurement |
| EFO:0004462 | PR interval |
| EFO:0004327 | electrocardiography |
MeSH disease descriptors
16 disease descriptors:
| Descriptor | Name | Tree numbers |
|---|---|---|
| D019571 | Arrhythmogenic Right Ventricular Dysplasia | C14.240.400.145; C14.280.238.028; C14.280.400.145; C16.131.240.400.145 |
| D009202 | Cardiomyopathies | C14.280.238 |
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
| D002312 | Cardiomyopathy, Hypertrophic | C14.280.238.100; C14.280.484.048.750.070.160 |
| D024741 | Cardiomyopathy, Hypertrophic, Familial | C14.280.238.100.500; C14.280.484.048.750.070.160.500; C16.320.160 |
| D009205 | Myocarditis | C14.280.238.625 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
| D017180 | Tachycardia, Ventricular | C14.280.067.845.940; C14.280.123.875.940; C23.550.073.845.940 |
| D014693 | Ventricular Fibrillation | C14.280.067.922; C23.550.073.922 |
| C564400 | Arrhythmogenic Right Ventricular Dysplasia, Familial, 8 *(supp.)* | |
| C563808 | Arrhythmogenic Right Ventricular Dysplasia, Familial, 9 *(supp.)* | |
| C535581 | Cardiomyopathy dilated with woolly hair and keratoderma *(supp.)* | |
| C565824 | Cardiomyopathy, Dilated, 1g *(supp.)* | |
| C535493 | Epidermolysis bullosa, lethal acantholytic *(supp.)* | |
| C565102 | Keratosis Palmoplantaris Striata II *(supp.)* | |
| C564359 | Skin Fragility-Woolly Hair Syndrome *(supp.)* |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL4742273 (PROTEIN-PROTEIN INTERACTION), CHEMBL6066953 (SINGLE PROTEIN)
PharmGKB: 1 entry (CPIC guideline: no)
PharmGKB variant annotations
Per-publication pharmacogenomic findings for this gene (significant associations).
1 published findings:
| Variant | Drug(s) | Category | Finding | PMID |
|---|---|---|---|---|
| rs2076295 | nintedanib | Efficacy | Genotype TT is associated with decreased overall survival when treated with nintedanib in people with Pulmonary Fibrosis as compared to genotypes GG + GT. | PMID:34515605 |
Binding affinities (BindingDB)
1 measured of 1 human assays (2 total across all organisms); most potent 1 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| CHEMBL5653589 | KD | 1440 nM |
ChEMBL bioactivities
2 potent at pChembl≥5 of 4 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.54 | Kd | 287.7 | nM | CHEMBL5653589 |
| 6.54 | ED50 | 287.7 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 5 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148265: Binding affinity to human DSP incubated for 45 mins by Kinobead based pull down assay | kd | 0.2877 | uM |
CTD chemical–gene interactions
78 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, decreases expression | 7 |
| trichostatin A | affects cotreatment, increases expression | 4 |
| sodium arsenite | decreases reaction, decreases expression, affects methylation, affects binding | 4 |
| Benzo(a)pyrene | affects methylation, decreases expression, increases expression, increases methylation | 4 |
| bisphenol A | decreases expression, increases expression | 3 |
| methylmercuric chloride | decreases expression | 2 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 2 |
| Cadmium | affects binding, decreases reaction, increases abundance, increases palmitoylation | 2 |
| Doxorubicin | increases expression, affects response to substance | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tetrachlorodibenzodioxin | increases expression | 2 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 2 |
| Cadmium Chloride | decreases reaction, increases abundance, increases palmitoylation, decreases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, affects cotreatment, increases expression | 2 |
| GSK-J4 | increases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| dicrotophos | increases expression | 1 |
| lead acetate | decreases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects localization, decreases expression, increases expression, affects cotreatment | 1 |
| IMOL S-140 | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| 16 alpha-ethyl-21-hydroxy-19-nor-4-pregnene-3,20-dione | increases expression | 1 |
| 2-bromopalmitate | decreases reaction, increases abundance, increases palmitoylation | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| cupric chloride | decreases expression | 1 |
| coumarin | decreases phosphorylation | 1 |
| triadimefon | decreases expression | 1 |
| artenimol | affects binding | 1 |
| S-(1,2-dichlorovinyl)cysteine | decreases reaction, increases expression | 1 |
ChEMBL screening assays
2 unique, capped per target: 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4713764 | Binding | Protac activity at CRBN/DSP in human BxPC-3 cells assessed as DSP degradation incubated for 16 hrs by proteomic analysis | Discovery of a Napabucasin PROTAC as an Effective Degrader of the E3 Ligase ZFP91. — *J Med Chem* |
Cellosaurus cell lines
10 cell lines: 10 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A2EJ | HUBUi001-A | Induced pluripotent stem cell | Female |
| CVCL_A2EK | HUBUi002-A | Induced pluripotent stem cell | Male |
| CVCL_A2EL | HUBUi003-A | Induced pluripotent stem cell | Female |
| CVCL_A8KR | EHTJUi004-A | Induced pluripotent stem cell | Female |
| CVCL_C6Q1 | ISCRMi001-A | Induced pluripotent stem cell | Female |
| CVCL_D0MM | UGENTi002-A | Induced pluripotent stem cell | Male |
| CVCL_D0MN | UGENTi002-A-1 | Induced pluripotent stem cell | Male |
| CVCL_WP82 | FAMRCi004-A | Induced pluripotent stem cell | Male |
| CVCL_WP83 | FAMRCi004-B | Induced pluripotent stem cell | Male |
| CVCL_XD52 | IBMS-iPSC-045-02 | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
showing 60 of 591 trials:
| NCT | Phase | Status | Title |
|---|---|---|---|
| NCT00879060 | Phase 4 | COMPLETED | Clinical and Therapeutic Implications of Fibrosis in Hypertrophic Cardiomyopathy |
| NCT01721967 | Phase 4 | COMPLETED | Ranolazine for the Treatment of Chest Pain in HCM Patients |
| NCT02948998 | Phase 4 | UNKNOWN | Evaluating the Effect of Spironolactone on Hypertrophic Cardiomyopathy |
| NCT03249272 | Phase 4 | TERMINATED | Microvascular Dysfunction in Nonischemic Cardiomyopathy: Insights From CMR Assessment of Coronary Flow Reserve |
| NCT04133532 | Phase 4 | COMPLETED | Effect of Metoprolol in Post Alcohol Septal Ablation Patients With Hypertrophic Cardiomyopathy |
| NCT06401343 | Phase 4 | UNKNOWN | Use of SGLT2i in noHCM With HFpEF |
| NCT07103655 | Phase 4 | ENROLLING_BY_INVITATION | The Therapeutic Value of Mavacamten in Hypertrophic Cardiomyopathy With Mid-to-Apical Left Ventricular Obstruction |
| NCT07600177 | Phase 4 | RECRUITING | Mavacamten to Aficamten Transition in Patients With Obstructive Hypertrophic Cardiomyopathy |
| NCT07807384 | Phase 4 | NOT_YET_RECRUITING | Efficacy and Safety of an LVEF-Guided Mavacamten Dose Up-Titration Strategy in Chinese Patients With Symptomatic Obstructive Hypertrophic Cardiomyopathy |
| NCT04586348 | Phase 4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | Phase 4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT00348530 | Phase 4 | UNKNOWN | Carvedilol Versus Verapamil in Chronic Heart Failure Secondary to Non-Ischemic Cardiomyopathy |
| NCT00371891 | Phase 4 | COMPLETED | Ontario Multidetector Computed Tomographic (MDCT) Coronary Angiography Study (OMCAS) |
| NCT00401856 | Phase 4 | COMPLETED | CMR to Assess Fibrosis in Cardiomyopathy Using Eplerenone |
| NCT00559338 | Phase 4 | COMPLETED | Impact of Nesiritide Infusion for Decompensated Heart Failure in the Emergency Department |
| NCT00606775 | Phase 4 | UNKNOWN | The Preventive Efficacy of Carvedilol on Cardiac Dysfunction in Duchenne Muscular Dystrophy |
| NCT00658203 | Phase 4 | COMPLETED | Clinical Evaluation on Advanced Resynchronization |
| NCT00701220 | Phase 4 | COMPLETED | Statin Therapy for Ischemic and Nonischemic Cardiomyopathy |
| NCT00800761 | Phase 4 | COMPLETED | Intensive Combined Chelation Therapy for Iron-Induced Cardiac Disease in Patients With Thalassemia Major |
| NCT00806390 | Phase 4 | TERMINATED | Prevention of Anthracycline or Trastuzumab Induced Cardiomyopathy by Metoprolol |
| NCT01006473 | Phase 4 | COMPLETED | Exercise Training in Chagas Cardiomyopathy |
| NCT01261065 | Phase 4 | COMPLETED | Mechanisms of Improvement With Beta-Blocker Treatment in Heart Failure |
| NCT01345188 | Phase 4 | COMPLETED | Ranolazine in Ischemic Cardiomyopathy |
| NCT01868841 | Phase 4 | COMPLETED | 123-I mIBG (AdreView) Heart-to-Mediastinal (H/M) Ratio and SPECT Imaging on a Small Field of View-High Efficiency Cardiac SPECT System |
| NCT02640846 | Phase 4 | UNKNOWN | Effects of Levosimendan, Milrinone and Norepinephrine on Left and Right Ventricular Function in Septic Shock |
| NCT03228823 | Phase 4 | UNKNOWN | Prospective Assessment of Premature Ventricular Contractions Suppression in Cardiomyopathy(PAPS) |
| NCT04323852 | Phase 4 | COMPLETED | Can Vitamin D Reduce Heart Muscle Damage After Bypass Surgery? |
| NCT05034432 | Phase 4 | RECRUITING | The PIVATAL Study -Study of Ventricular Arrhythmia (VTA) Ablation in Left Ventricular Assist Device (LVAD) Patients |
| NCT05371496 | Phase 4 | COMPLETED | Cardiac and Metabolic Effects of Semaglutide in Heart Failure With Preserved Ejection Fraction |
| NCT05718128 | Phase 4 | RECRUITING | Clinical Study of Endocardial Myocardial Biopsy |
| NCT06964464 | Phase 4 | RECRUITING | Comparative Effectiveness of Carvedilol Versus Metoprolol Succinate in Heart Failure Patients With an Implantable Cardioverter Defibrillator |
| NCT00317967 | Phase 3 | COMPLETED | Study to Determine if Atorvastatin Reduces Size and Stiffness of Muscle in the Left Ventricle of the Heart |
| NCT00698074 | Phase 3 | UNKNOWN | Diastolic Ventricular Interaction and the Effects of Biventricular Pacing in Hypertrophic Cardiomyopathy |
| NCT00821353 | Phase 3 | COMPLETED | Antiarrhythmic Therapy Versus Catheter Ablation for Atrial Fibrillation in Hypertrophic Cardiomyopathy |
| NCT02431221 | Phase 3 | WITHDRAWN | Efficacy, Safety, and Tolerability of Perhexiline in Subjects With Hypertrophic Cardiomyopathy and Heart Failure |
| NCT03470545 | Phase 3 | COMPLETED | Clinical Study to Evaluate Mavacamten (MYK-461) in Adults With Symptomatic Obstructive Hypertrophic Cardiomyopathy |
| NCT05174416 | Phase 3 | COMPLETED | A Study to Evaluate the Efficacy and Safety of Mavacamten in Chinese Adults With Symptomatic Obstructive HCM |
| NCT05182658 | Phase 3 | ACTIVE_NOT_RECRUITING | Empagliflozin in Hypertrophic Cardiomyopathy |
| NCT05186818 | Phase 3 | COMPLETED | Phase 3 Trial to Evaluate the Efficacy and Safety of Aficamten Compared to Placebo in Adults With Symptomatic oHCM |
| NCT05767346 | Phase 3 | COMPLETED | Phase 3 Trial to Evaluate the Efficacy and Safety of Aficamten Compared to Metoprolol Succinate in Adults With Symptomatic oHCM |
| NCT06116968 | Phase 3 | COMPLETED | An Open-Label Study of Aficamten for Chinese Patients With Symptomatic oHCM |
| NCT06873828 | Phase 3 | NOT_YET_RECRUITING | Evaluation of the Efficacy and Safety of Wearable ECG (AT-Patch) in Patients With Hypertrophic Cardiomyopathy Requiring 48-Hour Holter MonitoringEvaluation of the Efficacy and Safety of Wearable ECG (AT-Patch) in Patients With Hypertrophic Cardiomyopathy Requiring 48-Hour Holter Monitoring |
| NCT07021976 | Phase 3 | ACTIVE_NOT_RECRUITING | A Phase III Trial of HRS-1893 in Patients With Obstructive Hypertrophic Cardiomyopathy |
| NCT07023341 | Phase 3 | ACTIVE_NOT_RECRUITING | A Study to Learn More About How Well Aficamten Works in Japanese Participants With Symptomatic Obstructive Hypertrophic Cardiomyopathy |
| NCT07202897 | Phase 3 | RECRUITING | LA-HCM Study : Rivaroxaban for Antithrombotic Prevention in Hypertrophic Cardiomyopathy Patients With Abnormal Left Atrial Strain. |
| NCT02559102 | Phase 3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | Phase 3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | Phase 3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | Phase 3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT00170183 | Phase 3 | COMPLETED | Brain Natriuretic Peptide (BNP) to Preserve Renal Function in Hospitalized Patients With Heart Failure |
| NCT00270387 | Phase 3 | COMPLETED | A Study of Short-Term Outcomes and Economic Impact For Patients With Worsening Congestive Heart Failure When Natrecor (Nesiritide) is Added to Standard-Care Therapy, Compared to Administration of Placebo With Standard-Care Therapy |
| NCT00321295 | Phase 3 | COMPLETED | Biventricular Pacing In Patients With Left Ventricular Dysfunction After Cardiovascular Surgery |
| NCT00483197 | Phase 3 | UNKNOWN | VentrAssistTM LVAD as a Bridge to Cardiac Transplantation - Pivotal Trial |
| NCT00490321 | Phase 3 | UNKNOWN | VentrAssistTM LVAD for the Treatment of Advanced Heart Failure - Destination Therapy |
| NCT00626028 | Phase 3 | COMPLETED | Comparison of Inhaled Nitric Oxide and Oxygen in Participants Reactivity During Acute Pulmonary Vasodilator Testing |
| NCT01013714 | Phase 3 | UNKNOWN | Cardiac Sympathetic Denervation for Prevention of Ventricular Tachyarrhythmias |
| NCT01217827 | Phase 3 | COMPLETED | Implantable Cardioverter-Defibrillator Use in the VA System |
| NCT01648634 | Phase 3 | COMPLETED | Nebivolol for the Prevention of Left Ventricular Systolic Dysfunction in Patients With Duchenne Muscular Dystrophy |
| NCT02924285 | Phase 3 | COMPLETED | Catheter Ablation Versus Amiodarone for Therapy of Premature Ventricular Contractions in Patients With Structural Heart Disease |
| NCT03860935 | Phase 3 | COMPLETED | Efficacy and Safety of AG10 in Subjects With Transthyretin Amyloid Cardiomyopathy |
Predicted chemistry — Sugi Predict
The predicted patent-compound landscape for DSP across ~30M SureChEMBL compounds — explore on Sugi Predict.
Related Atlas pages
- Associated diseases: arrhythmogenic cardiomyopathy with wooly hair and keratoderma, skin fragility-woolly hair-palmoplantar keratoderma syndrome, lethal acantholytic epidermolysis bullosa, keratosis palmoplantaris striata 2, cardiomyopathy, dilated, with wooly hair, keratoderma, and tooth agenesis, hypertrophic cardiomyopathy, arrhythmogenic right ventricular dysplasia 8, familial isolated dilated cardiomyopathy, severe dermatitis-multiple allergies-metabolic wasting syndrome, striate palmoplantar keratoderma, familial hypertrophic cardiomyopathy, neurodevelopmental disorder
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): amyloidosis, arrhythmogenic cardiomyopathy with wooly hair and keratoderma, arrhythmogenic right ventricular cardiomyopathy, arrhythmogenic right ventricular dysplasia 1, arrhythmogenic right ventricular dysplasia 8, arrhythmogenic right ventricular dysplasia 9, Brugada syndrome, Brugada syndrome 1, cardiac rhythm disease, cardiomyopathy, dilated, with wooly hair, keratoderma, and tooth agenesis, chronic obstructive pulmonary disease, combined pulmonary fibrosis-emphysema syndrome, dilated cardiomyopathy, dilated cardiomyopathy 1A, dilated cardiomyopathy 1G, dilated cardiomyopathy 1S, familial dilated cardiomyopathy, familial hypertrophic cardiomyopathy, familial isolated arrhythmogenic right ventricular dysplasia, familial restrictive cardiomyopathy, hemiplegia, hypertrophic cardiomyopathy, hypertrophic cardiomyopathy 2, interstitial lung disease, interstitial lung disease 2, keratosis palmoplantaris striata 2, left ventricular noncompaction, lethal acantholytic epidermolysis bullosa, long QT syndrome 1, migraine disorder, myocarditis, non-compaction cardiomyopathy, paroxysmal familial ventricular fibrillation, progressive familial heart block, restrictive cardiomyopathy, severe dermatitis-multiple allergies-metabolic wasting syndrome, skin fragility-woolly hair-palmoplantar keratoderma syndrome, striate palmoplantar keratoderma, systolic heart failure, ventricular fibrillation, ventricular tachycardia, Wolff-Parkinson-White syndrome, woolly hair-skin fragility syndrome