DUOXA1
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Also known as FLJ32334NUMBIPNIPmol
Summary
DUOXA1 (dual oxidase maturation factor 1, HGNC:26507) is a protein-coding gene on chromosome 15q21.1, encoding Dual oxidase maturation factor 1 (Q1HG43). Required for the maturation and transport of functional DUOX1 from the endoplasmic reticulum to the plasma membrane.
Dual oxidases DUOX1 and DUOX2 are NADPH oxidases which are involved in hydrogen peroxide production necessary for thyroid hormonogenesis. They form a heterodimer with specific maturation factors DUOXA1 and DUOXA2, respectively, which is essential for the maturation and function of the DUOX enzyme complexes. This gene encodes the DUOX1 activator or maturation factor DUOXA1. Rat studies identified a bidirectional promoter which controls the transcription of the DUOX1 and DUOXA1 genes. This protein is cotransported to the cell surface when coexpressed with DUOX1 and is retained in the endoplasmic reticulum when expressed without DUOX1 protein. The expression of this gene or the DUOX1 gene is not suppressed by thyroglobulin (Tg), a macromolecular precursor in thyroid hormone synthesis, while the expression of the DUOX2 and DUOXA2 are significantly suppressed by the Tg. This protein is also a p53-regulated neurogenic factor involved in p53 dependent neuronal differentiation. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 90527 — RefSeq curated summary.
At a glance
- Gene–disease (curated): congenital hypothyroidism (Moderate, GenCC)
- Clinical variants (ClinVar): 79 total — 1 pathogenic, 2 likely-pathogenic
- MANE Select transcript:
NM_001276266
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26507 |
| Approved symbol | DUOXA1 |
| Name | dual oxidase maturation factor 1 |
| Location | 15q21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ32334, NUMBIP, NIP, mol |
| Ensembl gene | ENSG00000140254 |
| Ensembl biotype | protein_coding |
| OMIM | 612771 |
| Entrez | 90527 |
Gene structure
Transcript identifiers
Ensembl transcripts: 116 — 113 protein_coding, 2 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000267803, ENST00000430224, ENST00000558326, ENST00000558377, ENST00000558422, ENST00000558851, ENST00000558976, ENST00000558996, ENST00000559013, ENST00000559014, ENST00000559226, ENST00000559407, ENST00000559644, ENST00000559988, ENST00000560572, ENST00000613425, ENST00000885541, ENST00000885542, ENST00000885543, ENST00000885544, ENST00000885545, ENST00000885546, ENST00000885547, ENST00000885548, ENST00000885549, ENST00000885550, ENST00000885551, ENST00000885552, ENST00000885553, ENST00000885554, ENST00000885555, ENST00000885556, ENST00000885557, ENST00000885558, ENST00000885559, ENST00000885560, ENST00000885561, ENST00000885562, ENST00000885563, ENST00000885564, ENST00000885565, ENST00000885566, ENST00000885567, ENST00000885568, ENST00000885569, ENST00000885570, ENST00000885571, ENST00000885572, ENST00000885573, ENST00000885574, ENST00000885575, ENST00000885576, ENST00000926543, ENST00000957938, ENST00000957939, ENST00000957940, ENST00000957941, ENST00000957942, ENST00000957943, ENST00000957944, ENST00000957945, ENST00000957946, ENST00000957947, ENST00000957948, ENST00000957949, ENST00000957950, ENST00000957951, ENST00000957952, ENST00000957953, ENST00000957954, ENST00000957955, ENST00000957956, ENST00000957957, ENST00000957958, ENST00000957959, ENST00000957960, ENST00000957961, ENST00000957962, ENST00000957963, ENST00000957964, ENST00000957965, ENST00000957966, ENST00000957967, ENST00000957968, ENST00000957969, ENST00000957970, ENST00000957971, ENST00000957972, ENST00000957973, ENST00000957974, ENST00000957975, ENST00000957976, ENST00000957977, ENST00000957978, ENST00000957979, ENST00000957980, ENST00000957981, ENST00000957982, ENST00000957983, ENST00000957984, ENST00000957985, ENST00000957986, ENST00000957987, ENST00000957988, ENST00000957989, ENST00000957990, ENST00000957991, ENST00000957992, ENST00000957993, ENST00000957994, ENST00000957995, ENST00000957996, ENST00000957997, ENST00000957998, ENST00000957999, ENST00000958000
RefSeq mRNA: 7 — MANE Select: NM_001276266
NM_001276264, NM_001276265, NM_001276266, NM_001276267, NM_001276268, NM_001384349, NM_144565
CCDS: CCDS10119, CCDS61619, CCDS61620, CCDS61621
Canonical transcript exons
ENST00000560572 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001121213 | 45120103 | 45120320 |
| ENSE00001121233 | 45122185 | 45122242 |
| ENSE00001283651 | 45121087 | 45121221 |
| ENSE00001337034 | 45122868 | 45123043 |
| ENSE00001433394 | 45129018 | 45129134 |
| ENSE00001433993 | 45129460 | 45129615 |
| ENSE00001624190 | 45120592 | 45120805 |
| ENSE00002539526 | 45117366 | 45119365 |
| ENSE00002565574 | 45129852 | 45129879 |
Expression profiles
Bgee: expression breadth ubiquitous, 181 present calls, max score 98.81.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.6715 / max 101.0976, expressed in 123 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 149684 | 0.6008 | 122 |
| 149683 | 0.0707 | 36 |
Top tissues by expression
243 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lower esophagus mucosa | UBERON:0035834 | 98.81 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 98.26 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 97.86 | gold quality |
| esophagus mucosa | UBERON:0002469 | 97.30 | gold quality |
| thyroid gland | UBERON:0002046 | 97.17 | gold quality |
| skin of abdomen | UBERON:0001416 | 94.91 | gold quality |
| skin of leg | UBERON:0001511 | 94.78 | gold quality |
| right lung | UBERON:0002167 | 93.60 | gold quality |
| zone of skin | UBERON:0000014 | 92.90 | gold quality |
| lower lobe of lung | UBERON:0008949 | 92.73 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 92.68 | gold quality |
| upper lobe of lung | UBERON:0008948 | 92.63 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 91.59 | gold quality |
| buccal mucosa cell | CL:0002336 | 90.99 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 90.84 | gold quality |
| oral cavity | UBERON:0000167 | 90.36 | gold quality |
| vagina | UBERON:0000996 | 88.80 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 88.59 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 87.87 | gold quality |
| gingiva | UBERON:0001828 | 86.68 | gold quality |
| body of stomach | UBERON:0001161 | 85.96 | gold quality |
| lung | UBERON:0002048 | 85.47 | gold quality |
| gingival epithelium | UBERON:0001949 | 85.45 | gold quality |
| corpus epididymis | UBERON:0004359 | 84.73 | gold quality |
| cauda epididymis | UBERON:0004360 | 83.38 | gold quality |
| upper leg skin | UBERON:0004262 | 83.27 | gold quality |
| mammalian vulva | UBERON:0000997 | 83.25 | gold quality |
| bronchial epithelial cell | CL:0002328 | 82.50 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 81.59 | gold quality |
| bronchus | UBERON:0002185 | 81.40 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 24.56 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): SP1, TP53
miRNA regulators (miRDB)
12 targeting DUOXA1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-6715B-5P | 99.64 | 69.63 | 1420 |
| HSA-MIR-24-3P | 99.59 | 69.97 | 1934 |
| HSA-MIR-4269 | 99.55 | 69.89 | 1373 |
| HSA-MIR-5683 | 99.36 | 68.59 | 2083 |
| HSA-MIR-328-5P | 99.08 | 64.65 | 1000 |
| HSA-MIR-6885-5P | 98.71 | 64.33 | 902 |
| HSA-MIR-1245B-3P | 98.01 | 68.91 | 1387 |
| HSA-MIR-4749-3P | 96.40 | 66.24 | 798 |
| HSA-MIR-431-5P | 96.16 | 66.50 | 652 |
Literature-anchored findings (GeneRIF, showing 5)
- DUOXA1 transient overexpression affected the cell-cell adhesion by modulating the actin cytoskeleton (PMID:19322654)
- Heterodimerization controls localization of Duox-DuoxA NADPH oxidases in airway cells. (PMID:19339556)
- We analyzed the expression of NADPH oxidase isoforms and found both A431 and HaCaT cells to express the calcium-sensitive NADPH oxidase, Dual oxidase 1 (Duox1) and its protein partner Duox activator 1 (DuoxA1).Our observations provide evidence for a new signaling paradigm in which changes of intracellular calcium concentration are transformed into redox signals through the calcium-dependent activation of Duox1. (PMID:27262981)
- Study shows that DUOXA1 is overexpressed in platinum-resistant ovarian cancer (OC) cells, resulting in over production of reactive oxygen species (ROS). Elevated ROS level sustains the activation of ATR-Chk1 pathway, leading to resistance to cisplatin in OC cells. Clinical studies also confirm the activation of ATR and DOUXA1 in OC patients, and elevated DOUXA1 or ATR-Chk1 pathway correlates with poor prognosis. (PMID:29704517)
- Structures of human dual oxidase 1 complex in low-calcium and high-calcium states. (PMID:33420071)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | duox2 | ENSDARG00000078962 |
| mus_musculus | Duoxa1 | ENSMUSG00000027224 |
| rattus_norvegicus | Duoxa1 | ENSRNOG00000018005 |
| drosophila_melanogaster | mol | FBGN0086711 |
| caenorhabditis_elegans | WBGENE00015519 |
Paralogs (1): DUOXA2 (ENSG00000140274)
Protein
Protein identifiers
Dual oxidase maturation factor 1 — Q1HG43 (reviewed: Q1HG43)
Alternative names: Dual oxidase activator 1, Numb-interacting protein
All UniProt accessions (12): Q1HG43, A8K9Q6, B5M0B7, B5M0B8, B5M0C0, H0YKF3, H0YKG3, H0YLI1, H0YLQ4, H0YMH9, H0YMZ8, H0YNR1
UniProt curated annotations — full annotation on UniProt →
Function. Required for the maturation and transport of functional DUOX1 from the endoplasmic reticulum to the plasma membrane. Recruits DUOX1 to the apical cell membrane.
Subunit / interactions. Heterotetramer with DUOX1 consisting of 2 DUOX1-DUOXA1 heterodimers. This may represent the inactive state. Has also been detected as a heterodimer with DUOX1 which has been proposed to be the active state. May interact with NUMB.
Subcellular location. Apical cell membrane.
Tissue specificity. Specifically expressed in thyroid gland. Also detected in esophagus.
Post-translational modifications. N-glycosylation of DUOXA1 is required for sorting of DUOX1 to the apical cell membrane.
Similarity. Belongs to the DUOXA family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q1HG43-1 | 1 | yes |
| Q1HG43-2 | 2 | |
| Q1HG43-3 | 3 |
RefSeq proteins (7): NP_001263193, NP_001263194, NP_001263195, NP_001263196, NP_001263197, NP_001371278, NP_653166 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR018469 | Dual_oxidase_maturation_fac | Family |
Pfam: PF10204
UniProt features (41 total): strand 8, helix 8, topological domain 6, transmembrane region 5, glycosylation site 3, mutagenesis site 3, splice variant 2, sequence variant 2, chain 1, region of interest 1, compositionally biased region 1, disulfide bond 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7D3F | ELECTRON MICROSCOPY | 2.6 |
| 7D3E | ELECTRON MICROSCOPY | 2.8 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q1HG43-F1 | 82.56 | 0.66 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (1): 167–234
Glycosylation sites (3): 84, 109, 121
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 84 | abolishes targeting of duox1 to the apical cell membrane; when associated with q-109 and q-121. |
| 109 | abolishes targeting of duox1 to the apical cell membrane; when associated with q-84 and q-121. |
| 121 | abolishes targeting of duox1 to the apical cell membrane; when associated with q-84 and q-109. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-209968 | Thyroxine biosynthesis |
MSigDB gene sets: 93 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_MCMV_INFECTION_DN, GOBP_PHENOL_CONTAINING_COMPOUND_METABOLIC_PROCESS, BENPORATH_ES_WITH_H3K27ME3, GOBP_INFLAMMATORY_RESPONSE, GOBP_POSITIVE_REGULATION_OF_REACTIVE_OXYGEN_SPECIES_BIOSYNTHETIC_PROCESS, GOBP_POSITIVE_REGULATION_OF_NEURON_DIFFERENTIATION, GOBP_REGULATION_OF_HORMONE_LEVELS, GOBP_THYROID_HORMONE_METABOLIC_PROCESS, GOBP_NEUROGENESIS, GOBP_PROTEIN_LOCALIZATION_TO_CELL_PERIPHERY, GOBP_REACTIVE_OXYGEN_SPECIES_BIOSYNTHETIC_PROCESS, RICKMAN_TUMOR_DIFFERENTIATED_WELL_VS_POORLY_DN, GOBP_REGULATION_OF_NEURON_DIFFERENTIATION, GOBP_POSITIVE_REGULATION_OF_CELL_DIFFERENTIATION, GOBP_REGULATION_OF_RESPONSE_TO_STRESS
GO Biological Process (8): intracellular protein localization (GO:0008104), positive regulation of hydrogen peroxide biosynthetic process (GO:0010729), protein transport (GO:0015031), hydrogen peroxide metabolic process (GO:0042743), positive regulation of neuron differentiation (GO:0045666), regulation of inflammatory response (GO:0050727), regulation of thyroid hormone generation (GO:2000609), positive regulation of reactive oxygen species metabolic process (GO:2000379)
GO Molecular Function (2): enzyme binding (GO:0019899), protein binding (GO:0005515)
GO Cellular Component (5): endoplasmic reticulum (GO:0005783), endoplasmic reticulum membrane (GO:0005789), plasma membrane (GO:0005886), membrane (GO:0016020), cell leading edge (GO:0031252)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Metabolism of amine-derived hormones | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| reactive oxygen species metabolic process | 2 |
| cellular anatomical structure | 2 |
| macromolecule localization | 1 |
| regulation of hydrogen peroxide biosynthetic process | 1 |
| hydrogen peroxide biosynthetic process | 1 |
| positive regulation of reactive oxygen species biosynthetic process | 1 |
| transport | 1 |
| intracellular protein localization | 1 |
| establishment of protein localization | 1 |
| neuron differentiation | 1 |
| positive regulation of cell differentiation | 1 |
| regulation of neuron differentiation | 1 |
| inflammatory response | 1 |
| regulation of defense response | 1 |
| regulation of response to external stimulus | 1 |
| thyroid hormone generation | 1 |
| regulation of hormone metabolic process | 1 |
| positive regulation of metabolic process | 1 |
| regulation of reactive oxygen species metabolic process | 1 |
| protein binding | 1 |
| binding | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| membrane | 1 |
| cell periphery | 1 |
Protein interactions and networks
STRING
508 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DUOXA1 | DUOX1 | Q9NRD9 | 990 |
| DUOXA1 | DUOX2 | Q9NRD8 | 972 |
| DUOXA1 | NOXA1 | Q86UR1 | 775 |
| DUOXA1 | CYBB | P04839 | 658 |
| DUOXA1 | NOXO1 | Q8NFA2 | 650 |
| DUOXA1 | NOX5 | Q96PH1 | 642 |
| DUOXA1 | IYD | Q6PHW0 | 618 |
| DUOXA1 | NOX3 | Q9HBY0 | 614 |
| DUOXA1 | DUOXA2 | Q1HG44 | 606 |
| DUOXA1 | NUMB | P49757 | 599 |
| DUOXA1 | NUMBL | Q9Y6R0 | 598 |
| DUOXA1 | NOX1 | Q9Y5S8 | 584 |
| DUOXA1 | SLC5A5 | Q92911 | 576 |
| DUOXA1 | CYBA | P13498 | 575 |
| DUOXA1 | SLC26A4 | O43511 | 543 |
IntAct
5 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| DUOX1 | DUOXA1 | psi-mi:“MI:0407”(direct interaction) | 0.600 |
BioGRID (2): DUOXA1 (Affinity Capture-MS), DUOXA1 (Affinity Capture-Luminescence)
ESM2 similar proteins: A1L504, A2A6C4, A5D7M7, A6NH21, A8WCG0, B0BNG2, D3ZI76, E9PY61, J3QMI4, O15554, O75908, O77759, O89109, P0C8N6, P51811, Q14DK4, Q1HG43, Q3TD49, Q496Z4, Q49LS0, Q49LS1, Q49LS5, Q49LS8, Q5GH56, Q5GH64, Q5GH72, Q5PQL3, Q5T1A1, Q5XK03, Q60850, Q6PRD1, Q7RTS5, Q7RTS6, Q7TN58, Q7TN60, Q7TQ65, Q7Z403, Q7Z404, Q80SX5, Q80UF9
Diamond homologs: P34298, Q1HG43, Q8VE49, Q0P4G7, Q1HG44, Q6DDK3, Q9D311
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
79 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 2 |
| Uncertain significance | 54 |
| Likely benign | 12 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3366765 | NC_000015.9:g.(?45406523)(45410620_?)del | Pathogenic |
| 3577220 | NM_207581.4(DUOXA2):c.770-19_780del | Likely pathogenic |
| 3577221 | NM_207581.4(DUOXA2):c.860del (p.Lys287fs) | Likely pathogenic |
SpliceAI
1115 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:45117698:C:CA | acceptor_gain | 1.0000 |
| 15:45117715:GGC:G | acceptor_gain | 1.0000 |
| 15:45120806:C:CC | acceptor_gain | 1.0000 |
| 15:45122867:CCGT:C | donor_gain | 1.0000 |
| 15:45117706:A:AG | acceptor_gain | 0.9900 |
| 15:45117706:ACC:A | acceptor_gain | 0.9900 |
| 15:45117707:C:G | acceptor_gain | 0.9900 |
| 15:45117708:C:CA | acceptor_gain | 0.9900 |
| 15:45117713:CAGG:C | acceptor_loss | 0.9900 |
| 15:45117714:A:AG | acceptor_gain | 0.9900 |
| 15:45117714:AGGC:A | acceptor_gain | 0.9900 |
| 15:45117715:G:GT | acceptor_gain | 0.9900 |
| 15:45117715:GGCG:G | acceptor_gain | 0.9900 |
| 15:45117715:GGCGT:G | acceptor_gain | 0.9900 |
| 15:45119363:GTC:G | acceptor_gain | 0.9900 |
| 15:45119366:C:CC | acceptor_gain | 0.9900 |
| 15:45119366:C:CG | acceptor_loss | 0.9900 |
| 15:45119367:T:C | acceptor_loss | 0.9900 |
| 15:45119372:A:AC | acceptor_gain | 0.9900 |
| 15:45119372:A:C | acceptor_gain | 0.9900 |
| 15:45120259:C:CT | acceptor_gain | 0.9900 |
| 15:45120266:C:CT | acceptor_gain | 0.9900 |
| 15:45120267:A:T | acceptor_gain | 0.9900 |
| 15:45120586:CCTCA:C | donor_loss | 0.9900 |
| 15:45120587:CTCA:C | donor_loss | 0.9900 |
| 15:45120588:TCAC:T | donor_loss | 0.9900 |
| 15:45120589:CACCA:C | donor_loss | 0.9900 |
| 15:45120590:A:T | donor_loss | 0.9900 |
| 15:45120591:C:CA | donor_loss | 0.9900 |
| 15:45120801:GGTCC:G | acceptor_gain | 0.9900 |
AlphaMissense
2210 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 15:45122210:G:C | S60R | 0.972 |
| 15:45122210:G:T | S60R | 0.972 |
| 15:45122212:T:G | S60R | 0.972 |
| 15:45121201:A:G | W76R | 0.971 |
| 15:45121201:A:T | W76R | 0.971 |
| 15:45120304:A:G | W191R | 0.957 |
| 15:45120304:A:T | W191R | 0.957 |
| 15:45121199:C:A | W76C | 0.945 |
| 15:45121199:C:G | W76C | 0.945 |
| 15:45121092:A:G | L112P | 0.923 |
| 15:45120752:A:G | W132R | 0.919 |
| 15:45120752:A:T | W132R | 0.919 |
| 15:45121157:G:C | F90L | 0.918 |
| 15:45121157:G:T | F90L | 0.918 |
| 15:45121159:A:G | F90L | 0.918 |
| 15:45121163:C:A | K88N | 0.913 |
| 15:45121163:C:G | K88N | 0.913 |
| 15:45120756:G:C | F130L | 0.910 |
| 15:45120756:G:T | F130L | 0.910 |
| 15:45120758:A:G | F130L | 0.910 |
| 15:45120235:C:G | G214R | 0.906 |
| 15:45120757:A:G | F130S | 0.905 |
| 15:45119345:C:G | G265R | 0.904 |
| 15:45119357:A:G | C261R | 0.901 |
| 15:45120103:C:G | G258R | 0.901 |
| 15:45120103:C:T | G258R | 0.901 |
| 15:45120122:G:C | F251L | 0.899 |
| 15:45120122:G:T | F251L | 0.899 |
| 15:45120124:A:G | F251L | 0.899 |
| 15:45120234:C:T | G214D | 0.895 |
dbSNP variants (sampled 300 via entrez): RS1000210494 (15:45128723 T>C), RS1000366818 (15:45125620 G>A), RS1000483424 (15:45131866 C>A,G,T), RS1000747176 (15:45120505 C>A,G,T), RS1000865006 (15:45130248 G>A), RS1001944739 (15:45120515 G>A), RS1002040904 (15:45127167 C>T), RS1002239166 (15:45125493 G>A,T), RS1002292768 (15:45120767 T>C), RS1002576079 (15:45124055 A>G), RS1002648118 (15:45130187 C>T), RS1002700491 (15:45129966 C>G), RS1002754201 (15:45129677 G>A), RS1003208915 (15:45117461 G>A), RS1003552472 (15:45122277 G>A,C)
Disease associations
OMIM: gene MIM:612771 | disease phenotypes: MIM:274900
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| congenital hypothyroidism | Moderate | Semidominant |
Mondo (2): thyroid dyshormonogenesis 5 (MONDO:0010137), congenital hypothyroidism (MONDO:0018612)
Orphanet (1): Familial thyroid dyshormonogenesis (Orphanet:95716)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D003409 | Congenital Hypothyroidism | C05.116.099.343.347; C05.116.132.256; C16.320.240.625; C19.297.155; C19.874.482.281 |
| C562771 | Thyroid Dyshormonogenesis 5 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
19 total (human), top 19 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Resveratrol | affects cotreatment, decreases expression | 2 |
| Aflatoxin B1 | increases expression, decreases methylation | 2 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| trametinib | affects cotreatment, decreases expression | 1 |
| NVP-BKM120 | affects cotreatment, decreases expression | 1 |
| Antimony Potassium Tartrate | decreases expression | 1 |
| Copper | affects cotreatment, decreases expression | 1 |
| Diazinon | decreases methylation | 1 |
| Nickel | increases expression | 1 |
| Paraquat | increases expression | 1 |
| Phenobarbital | increases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Valproic Acid | decreases methylation | 1 |
| Okadaic Acid | increases expression | 1 |
| Lactic Acid | decreases expression | 1 |
| Particulate Matter | decreases expression | 1 |
Clinical trials (associated diseases)
24 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05228184 | PHASE4 | TERMINATED | Use of Tirosint®-SOL or Tablet Formulations of Levothyroxine in Pediatric Patients With Congenital Hypothyroidism (CH) |
| NCT05371262 | PHASE4 | COMPLETED | Influence of Initial Levothyroxine Dose on Neurodevelopmental and Growth Outcomes in Congenital Hypothyroidism |
| NCT00403390 | Not specified | COMPLETED | Generic vs. Name-Brand Levothyroxine |
| NCT00493103 | Not specified | COMPLETED | TG Gene Mutations and Congenital Hypothyroidism |
| NCT00497575 | Not specified | COMPLETED | Diagnosis and Follow-up of Patients With Subclinical Hypothyroidism |
| NCT00505479 | Not specified | UNKNOWN | Iodine Status in Pregnant Women and Their Newborns: is Congenital Hypothyroidism Related to Iodine Deficiency in Pregnancy? |
| NCT01223638 | Not specified | WITHDRAWN | The Prevalence of Hearing Loss Among Children With Congenital Hypothyroidism |
| NCT01349634 | Not specified | COMPLETED | The Effects of Iodized Salt on Cognitive Development in Ethiopia |
| NCT01488721 | Not specified | COMPLETED | Clinical Evaluation of NeoPlex4 Assay and NeoPlex System |
| NCT01916018 | Not specified | COMPLETED | Clinical and Genetic Analysis in Congenital Hypothyroidism Due to Thyroid Dysgenesis. |
| NCT02307175 | Not specified | COMPLETED | A Study of 99m Tc Pertechnetate Produced in High Energy Cyclotron in Patients With Thyroid Scan Indication |
| NCT02374593 | Not specified | COMPLETED | Targeted Levothyroxine Dosing in Infants With Congenital Hypothyroidism |
| NCT03655223 | Not specified | ENROLLING_BY_INVITATION | Early Check: Expanded Screening in Newborns |
| NCT04712760 | Not specified | UNKNOWN | Congenital Hypothyroidism in Children With Eutopic Gland or Thyroid Hemiagenesis: Predictive Factors for Transient vs Permanent Hypothyroidism. |
| NCT04734457 | Not specified | UNKNOWN | Final Height in Patients With CH Diagnosed by the Screening |
| NCT05687474 | Not specified | COMPLETED | Baby Detect : Genomic Newborn Screening |
| NCT06724224 | Not specified | RECRUITING | Comparison of Levothyroxine Formulations in the Treatment of Congenital Hypothyroidism |
| NCT06728735 | Not specified | RECRUITING | Role of Next Generation Sequencing in the Etiological Diagnosis of Permanent Congenital Hypothyroidism With in Situ Thyroid |
| NCT06864039 | Not specified | ENROLLING_BY_INVITATION | Quality of Life and Long-term Outcome of Adequately Treated Congenital Hypothyroidism |
| NCT06864351 | Not specified | RECRUITING | Prospective Evaluation of OptiThyDose |
| NCT07126353 | Not specified | NOT_YET_RECRUITING | Metabolic Risk Assessment in Prepubertal Children With Congenital Hypothyroidism |
| NCT07280104 | Not specified | RECRUITING | Infants With Primary Congenital Hypothyroidism and Development |
| NCT07425028 | Not specified | NOT_YET_RECRUITING | Evaluation of an Intensified Systematic Screening for Congenital Hypothyroidism in Premature Newborns |
| NCT07579988 | Not specified | NOT_YET_RECRUITING | Ultrasound Measurement of Thyroid Volume in Term Newborns |
Related Atlas pages
- Associated diseases: congenital hypothyroidism
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital hypothyroidism, thyroid dyshormonogenesis 5