DUS2
gene geneOn this page
Also known as FLJ20399SMM1
Summary
DUS2 (dihydrouridine synthase 2, HGNC:26014) is a protein-coding gene on chromosome 16q22.1, encoding tRNA-dihydrouridine(20) synthase [NAD(P)+]-like (Q9NX74). Catalyzes the NADPH-dependent synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
This gene encodes a cytoplasmic protein that catalyzes the conversion of uridine residues to dihydrouridine in the D-loop of tRNA. The resulting modified bases confer enhanced regional flexibility to tRNA. The encoded protein may increase the rate of translation by inhibiting an interferon-induced protein kinase. This gene has been implicated in pulmonary carcinogenesis. Alternatively spliced transcript variants have been described for this gene.
Source: NCBI Gene 54920 — RefSeq curated summary.
At a glance
- GWAS associations: 5
- Clinical variants (ClinVar): 70 total
- Druggable target: yes
- MANE Select transcript:
NM_017803
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26014 |
| Approved symbol | DUS2 |
| Name | dihydrouridine synthase 2 |
| Location | 16q22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ20399, SMM1 |
| Ensembl gene | ENSG00000167264 |
| Ensembl biotype | protein_coding |
| OMIM | 609707 |
| Entrez | 54920 |
Gene structure
Transcript identifiers
Ensembl transcripts: 54 — 51 protein_coding, 2 retained_intron, 1 nonsense_mediated_decay
ENST00000358896, ENST00000432752, ENST00000561965, ENST00000562246, ENST00000564781, ENST00000564975, ENST00000565263, ENST00000565980, ENST00000566306, ENST00000567100, ENST00000568099, ENST00000569289, ENST00000570709, ENST00000571081, ENST00000575677, ENST00000576994, ENST00000859099, ENST00000859100, ENST00000859101, ENST00000859102, ENST00000859103, ENST00000859104, ENST00000859105, ENST00000859106, ENST00000859107, ENST00000859108, ENST00000859109, ENST00000859110, ENST00000859111, ENST00000859112, ENST00000859113, ENST00000859114, ENST00000914566, ENST00000914567, ENST00000914568, ENST00000914569, ENST00000914570, ENST00000914571, ENST00000914573, ENST00000914575, ENST00000914576, ENST00000914577, ENST00000914578, ENST00000914579, ENST00000914580, ENST00000914581, ENST00000970018, ENST00000970019, ENST00000970020, ENST00000970021, ENST00000970022, ENST00000970023, ENST00000970024, ENST00000970025
RefSeq mRNA: 3 — MANE Select: NM_017803
NM_001271762, NM_001271763, NM_017803
CCDS: CCDS10859, CCDS61970
Canonical transcript exons
ENST00000565263 — 17 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001516666 | 68025415 | 68025494 |
| ENSE00001810734 | 68023284 | 68023351 |
| ENSE00001822362 | 68078749 | 68079320 |
| ENSE00003491546 | 68070134 | 68070220 |
| ENSE00003497611 | 68074034 | 68074155 |
| ENSE00003505791 | 68054574 | 68054617 |
| ENSE00003525450 | 68076632 | 68076719 |
| ENSE00003567043 | 68066566 | 68066636 |
| ENSE00003579912 | 68070940 | 68071108 |
| ENSE00003597822 | 68038006 | 68038149 |
| ENSE00003626724 | 68049505 | 68049550 |
| ENSE00003635036 | 68061066 | 68061113 |
| ENSE00003657723 | 68066317 | 68066382 |
| ENSE00003668558 | 68078445 | 68078518 |
| ENSE00003691437 | 68075355 | 68075504 |
| ENSE00003788831 | 68053564 | 68053655 |
| ENSE00003790560 | 68056364 | 68056424 |
Expression profiles
Bgee: expression breadth ubiquitous, 236 present calls, max score 91.30.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.0726 / max 214.7140, expressed in 1787 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 154702 | 8.8492 | 1773 |
| 154701 | 3.0495 | 1491 |
| 154700 | 0.0909 | 11 |
| 154706 | 0.0423 | 14 |
| 154705 | 0.0406 | 20 |
Top tissues by expression
269 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| granulocyte | CL:0000094 | 91.30 | gold quality |
| left testis | UBERON:0004533 | 90.97 | gold quality |
| right testis | UBERON:0004534 | 90.79 | gold quality |
| monocyte | CL:0000576 | 90.58 | gold quality |
| mononuclear cell | CL:0000842 | 90.48 | gold quality |
| leukocyte | CL:0000738 | 90.27 | gold quality |
| pancreatic ductal cell | CL:0002079 | 90.11 | silver quality |
| blood | UBERON:0000178 | 89.31 | gold quality |
| testis | UBERON:0000473 | 88.68 | gold quality |
| spleen | UBERON:0002106 | 88.18 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 87.24 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 85.99 | gold quality |
| lymph node | UBERON:0000029 | 85.94 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 85.53 | gold quality |
| bone marrow cell | CL:0002092 | 85.36 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 85.35 | gold quality |
| type B pancreatic cell | CL:0000169 | 85.13 | gold quality |
| esophagus mucosa | UBERON:0002469 | 84.24 | gold quality |
| olfactory bulb | UBERON:0002264 | 84.23 | gold quality |
| male germ cell | CL:0000015 | 83.99 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 83.90 | gold quality |
| sperm | CL:0000019 | 83.82 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 83.34 | gold quality |
| bone marrow | UBERON:0002371 | 83.18 | gold quality |
| skin of leg | UBERON:0001511 | 83.15 | gold quality |
| vena cava | UBERON:0004087 | 83.05 | silver quality |
| tonsil | UBERON:0002372 | 83.04 | gold quality |
| skin of abdomen | UBERON:0001416 | 82.30 | gold quality |
| gastrocnemius | UBERON:0001388 | 82.29 | gold quality |
| vermiform appendix | UBERON:0001154 | 82.23 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 3.34 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
11 targeting DUS2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-3925-5P | 99.21 | 67.90 | 1466 |
| HSA-MIR-4478 | 99.07 | 65.16 | 2320 |
| HSA-MIR-4755-3P | 98.77 | 65.59 | 1915 |
| HSA-MIR-668-3P | 96.18 | 65.80 | 673 |
Literature-anchored findings (GeneRIF, showing 5)
- hDUS2 interacts with protein kinase PKR through its dsRNA binding/dimerization domain and inhibits its kinase activity. (PMID:18096616)
- crystals belonged to space group P2(1) and contained a single molecule of HsDus2L in the asymmetric unit (PMID:22442237)
- Here, the X-ray crystal structure of a construct of hDus2 encompassing the catalytic and tRNA-recognition domains (residues 1-340) determined at 1.9 A resolution is presented. (PMID:26143927)
- This is the first reported case of a tRNA-modifying enzyme (dihydrouridine synthase 2) carrying a dsRNA binding domain used to bind tRNAs. (PMID:26429968)
- we establish that while hDus2 dsRBD retains a conventional dsRNA recognition capability, the presence of an N-terminal extension appended to the canonical domain provides additional residues for binding tRNA in a structure-specific mode of action. (PMID:30605527)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | dus2 | ENSDARG00000077607 |
| mus_musculus | Dus2 | ENSMUSG00000031901 |
| rattus_norvegicus | Dus2 | ENSRNOG00000019819 |
| drosophila_melanogaster | Dus2 | FBGN0030554 |
| caenorhabditis_elegans | dus-2 | WBGENE00013201 |
Paralogs (3): DUS4L (ENSG00000105865), DUS3L (ENSG00000141994), DUS1L (ENSG00000169718)
Protein
Protein identifiers
tRNA-dihydrouridine(20) synthase [NAD(P)+]-like — Q9NX74 (reviewed: Q9NX74)
Alternative names: Dihydrouridine synthase 2, Up-regulated in lung cancer protein 8, tRNA-dihydrouridine synthase 2-like
All UniProt accessions (13): E7EUN9, Q9NX74, H3BM64, H3BMK6, H3BQX4, H3BRI6, H3BSF3, H3BTR3, I3L0K0, I3L1K5, I3L4H0, I3L4Y9, J3QLD5
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the NADPH-dependent synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U20 in cytoplasmic tRNAs. Activity depends on the presence of guanosine at position 19 in the tRNA substrate. Negatively regulates the activation of EIF2AK2/PKR.
Subunit / interactions. Interacts with EPRS1. Interacts (via DRBM domain) with PRKRA and EIF2AK2/PKR (via DRBM 1 domain).
Subcellular location. Cytoplasm. Endoplasmic reticulum.
Tissue specificity. Weak expression in heart, placenta and skeletal muscle. Up-regulated in most lung cancer cells (at protein level).
Activity regulation. Inhibited by canertinib, PD 168393, AST-1306 and PF-6274484.
Domain organisation. Efficient dihydrouridine synthesis requires the presence of both the catalytic domain and the C-terminal RNA-binding DRBM domain.
Similarity. Belongs to the Dus family. Dus2 subfamily.
RefSeq proteins (3): NP_001258691, NP_001258692, NP_060273* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR013785 | Aldolase_TIM | Homologous_superfamily |
| IPR014720 | dsRBD_dom | Domain |
| IPR018517 | tRNA_hU_synthase_CS | Conserved_site |
| IPR035587 | DUS-like_FMN-bd | Domain |
| IPR044463 | DUS2_DSRM | Domain |
| IPR052582 | tRNA-DUS-like | Family |
Pfam: PF00035, PF01207
Enzyme classification (BRENDA):
- EC 1.3.1.91 — tRNA-dihydrouridine20 synthase [NAD(P)+] (BRENDA: 4 organisms, 19 substrates, 0 inhibitors, 1 Km, 1 kcat entries)
Catalyzed reactions (Rhea), 1 shown:
- 5,6-dihydrouridine(20) in tRNA + NADP(+) = uridine(20) in tRNA + NADPH + H(+) (RHEA:53336)
UniProt features (74 total): helix 22, strand 17, mutagenesis site 11, binding site 7, turn 6, region of interest 5, modified residue 2, chain 1, domain 1, compositionally biased region 1, active site 1
Structure
Experimental structures (PDB)
11 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4WFT | X-RAY DIFFRACTION | 1.7 |
| 5OC4 | X-RAY DIFFRACTION | 1.71 |
| 5OC5 | X-RAY DIFFRACTION | 1.89 |
| 4XP7 | X-RAY DIFFRACTION | 1.9 |
| 6EZA | X-RAY DIFFRACTION | 2 |
| 6EZC | X-RAY DIFFRACTION | 2 |
| 6F00 | X-RAY DIFFRACTION | 2.16 |
| 6EI8 | X-RAY DIFFRACTION | 2.25 |
| 6EZB | X-RAY DIFFRACTION | 2.25 |
| 4WFS | X-RAY DIFFRACTION | 2.68 |
| 5OC6 | X-RAY DIFFRACTION | 3.2 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NX74-F1 | 87.81 | 0.76 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 116 (proton donor)
Ligand- & substrate-binding residues (7): 43; 87; 155; 183; 214–216; 242–243; 18–20
Post-translational modifications (2): 445, 488
Mutagenesis-validated functional residues (11):
| Position | Phenotype |
|---|---|
| 294 | increased affinity for trna and increased dihydrouridine synthesis; when associated with k-305. |
| 305 | increased affinity for trna and increased dihydrouridine synthesis; when associated with k-294. |
| 361–362 | decreased affinity for trna. |
| 367 | mildly decreased affinity for trna. |
| 371 | strongly decreased affinity for trna. |
| 372 | mildly decreased affinity for trna. |
| 379 | mildly decreased affinity for trna. |
| 397 | mildly decreased affinity for trna. |
| 417 | mildly decreased affinity for trna. |
| 419 | decreased affinity for trna. strongly decreased affinity for trna; when associated with a-420. |
| 420 | decreased affinity for trna. strongly decreased affinity for trna; when associated with a-419. |
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-6782315 | tRNA modification in the nucleus and cytosol |
| R-HSA-9833482 | PKR-mediated signaling |
MSigDB gene sets: 150 (showing top):
WANG_CLIM2_TARGETS_UP, chr16q22, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_THE_CH_CH_GROUP_OF_DONORS, GOBP_TRNA_METABOLIC_PROCESS, SENESE_HDAC1_AND_HDAC2_TARGETS_DN, GOBP_DEFENSE_RESPONSE_TO_OTHER_ORGANISM, GOBP_RNA_MODIFICATION, DOANE_RESPONSE_TO_ANDROGEN_DN, CREB_Q2_01, GOBP_DEFENSE_RESPONSE_TO_VIRUS, GOBP_TRNA_PROCESSING, CREBP1CJUN_01, GOBP_RESPONSE_TO_VIRUS, REACTOME_METABOLISM_OF_RNA
GO Biological Process (3): tRNA dihydrouridine synthesis (GO:0002943), antiviral innate immune response (GO:0140374), tRNA processing (GO:0008033)
GO Molecular Function (11): tRNA binding (GO:0000049), double-stranded RNA binding (GO:0003725), protein kinase inhibitor activity (GO:0004860), FMN binding (GO:0010181), tRNA dihydrouridine synthase activity (GO:0017150), flavin adenine dinucleotide binding (GO:0050660), NADPH binding (GO:0070402), tRNA-dihydrouridine20 synthase activity (GO:0102264), RNA binding (GO:0003723), protein binding (GO:0005515), oxidoreductase activity (GO:0016491)
GO Cellular Component (4): cytoplasm (GO:0005737), mitochondrion (GO:0005739), endoplasmic reticulum (GO:0005783), cytosol (GO:0005829)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| tRNA processing | 1 |
| Antimicrobial mechanism of IFN-stimulated genes | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| anion binding | 3 |
| cytoplasm | 3 |
| RNA binding | 2 |
| cellular anatomical structure | 2 |
| intracellular membrane-bounded organelle | 2 |
| tRNA modification | 1 |
| innate immune response | 1 |
| defense response to virus | 1 |
| RNA processing | 1 |
| tRNA metabolic process | 1 |
| protein kinase activity | 1 |
| kinase inhibitor activity | 1 |
| protein kinase regulator activity | 1 |
| ribonucleotide binding | 1 |
| tRNA dihydrouridine synthesis | 1 |
| RNA dihydrouridine synthase activity | 1 |
| catalytic activity, acting on a tRNA | 1 |
| nucleotide binding | 1 |
| NADP binding | 1 |
| tRNA dihydrouridine synthase activity | 1 |
| nucleic acid binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| intracellular anatomical structure | 1 |
| endomembrane system | 1 |
Protein interactions and networks
STRING
1882 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DUS2 | EPRS1 | P07814 | 918 |
| DUS2 | TRMT1 | Q9NXH9 | 644 |
| DUS2 | TRMT5 | Q32P41 | 643 |
| DUS2 | TRUB1 | Q8WWH5 | 629 |
| DUS2 | TRIT1 | Q9H3H1 | 614 |
| DUS2 | DDX28 | Q9NUL7 | 592 |
| DUS2 | TRMT10A | Q8TBZ6 | 548 |
| DUS2 | TRMT61A | Q96FX7 | 532 |
| DUS2 | COMTD1 | Q86VU5 | 530 |
| DUS2 | DTWD2 | Q8NBA8 | 530 |
| DUS2 | TRMT44 | Q8IYL2 | 514 |
| DUS2 | DTWD1 | Q8N5C7 | 512 |
| DUS2 | BUD13 | Q9BRD0 | 504 |
| DUS2 | GTPBP3 | Q969Y2 | 491 |
| DUS2 | MAP6D1 | Q9H9H5 | 489 |
IntAct
15 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| KANSL1 | PHF20L1 | psi-mi:“MI:0914”(association) | 0.530 |
| NS | DUS2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| DUS2 | NS1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| DUS2 | NS | psi-mi:“MI:0915”(physical association) | 0.370 |
| NECTIN2 | DUS2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| DUS2 | SMN1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| DUS2 | TK1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| JUN | psi-mi:“MI:0914”(association) | 0.350 | |
| SSB | RPS3A | psi-mi:“MI:0914”(association) | 0.350 |
| KANSL1 | ECI2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (27): DUS2 (Affinity Capture-MS), DUS2 (Affinity Capture-MS), DUS2 (Affinity Capture-MS), DUS2 (Two-hybrid), DUS2 (Two-hybrid), PRKRA (Two-hybrid), EIF2AK2 (Two-hybrid), DUS2 (Reconstituted Complex), DUS2 (Reconstituted Complex), EIF2AK2 (Affinity Capture-Western), PRKRA (Affinity Capture-Western), DUS2 (Affinity Capture-MS), DUS2 (Co-fractionation), DUS2 (Co-fractionation), DUS2 (Co-fractionation)
ESM2 similar proteins: A2VE14, A5PLN9, B1WC68, D3Z7P3, O54865, O89050, O94925, P13264, P16068, P20595, P38024, P51583, P97834, Q02153, Q0VCB2, Q0VCJ8, Q13042, Q13098, Q3TIR1, Q4R4U1, Q4ZHR9, Q5F450, Q5M887, Q5NVN7, Q5R5F8, Q5RB35, Q5RB59, Q5RBN9, Q5RKN4, Q5ZJB7, Q5ZMH6, Q67FW5, Q6AXQ0, Q6NRT5, Q86TJ2, Q8R349, Q8VH37, Q91YQ7, Q99LD4, Q99PV3
Diamond homologs: A3LUK5, A5DBS1, O25427, O27281, O52532, O52533, O52536, O52539, O67533, O68273, O83945, O95620, P0A2R6, P0A2R7, P0ABT5, P0ABT6, P0ABT7, P0CN28, P0CN29, P33371, P37567, P41504, P44606, P44965, P45672, P9WNS6, P9WNS7, Q06063, Q08111, Q09504, Q1RH84, Q28BT8, Q3KRC5, Q3SWF0, Q4UNJ4, Q50049, Q54CU9, Q55724, Q68XZ3, Q6CWM0
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
70 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 69 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
5819 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 16:67989319:TCA:T | donor_loss | 1.0000 |
| 16:67989320:CACT:C | donor_loss | 1.0000 |
| 16:67989321:A:AC | donor_gain | 1.0000 |
| 16:67989321:AC:A | donor_loss | 1.0000 |
| 16:67989322:C:CT | donor_gain | 1.0000 |
| 16:67989322:CTTG:C | donor_gain | 1.0000 |
| 16:67989394:GTGAT:G | acceptor_gain | 1.0000 |
| 16:67989395:TGAT:T | acceptor_gain | 1.0000 |
| 16:67989396:GAT:G | acceptor_gain | 1.0000 |
| 16:67989398:TCTG:T | acceptor_loss | 1.0000 |
| 16:67989399:C:CC | acceptor_gain | 1.0000 |
| 16:67989399:CTGG:C | acceptor_loss | 1.0000 |
| 16:67990132:C:CC | acceptor_gain | 1.0000 |
| 16:67991008:A:C | acceptor_gain | 1.0000 |
| 16:67991880:C:CA | donor_gain | 1.0000 |
| 16:67991975:CAGAG:C | acceptor_gain | 1.0000 |
| 16:67991980:C:CC | acceptor_gain | 1.0000 |
| 16:67992060:CTAC:C | donor_loss | 1.0000 |
| 16:67992062:ACCTT:A | donor_loss | 1.0000 |
| 16:67992063:C:CT | donor_loss | 1.0000 |
| 16:67992189:CAGAA:C | acceptor_gain | 1.0000 |
| 16:68038002:TCAG:T | acceptor_loss | 1.0000 |
| 16:68038004:A:AG | acceptor_gain | 1.0000 |
| 16:68038004:A:G | acceptor_loss | 1.0000 |
| 16:68038004:AG:A | acceptor_gain | 1.0000 |
| 16:68038005:G:GA | acceptor_gain | 1.0000 |
| 16:68038005:GG:G | acceptor_gain | 1.0000 |
| 16:68038005:GGC:G | acceptor_gain | 1.0000 |
| 16:68038005:GGCT:G | acceptor_gain | 1.0000 |
| 16:68038149:GGTAA:G | donor_loss | 1.0000 |
AlphaMissense
3192 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 16:68038106:G:C | R28T | 0.999 |
| 16:68038106:G:T | R28M | 0.999 |
| 16:68038107:G:C | R28S | 0.999 |
| 16:68038107:G:T | R28S | 0.999 |
| 16:68056394:C:A | N113K | 0.999 |
| 16:68056394:C:G | N113K | 0.999 |
| 16:68056401:T:C | C116R | 0.999 |
| 16:68066361:C:G | C154W | 0.999 |
| 16:68066627:T:A | V182D | 0.999 |
| 16:68066636:G:C | R185T | 0.999 |
| 16:68070134:G:C | R185S | 0.999 |
| 16:68070134:G:T | R185S | 0.999 |
| 16:68038139:T:A | V39D | 0.998 |
| 16:68053615:G:C | R75P | 0.998 |
| 16:68056390:T:A | V112D | 0.998 |
| 16:68066359:T:C | C154R | 0.998 |
| 16:68066636:G:T | R185M | 0.998 |
| 16:68074069:G:C | K282N | 0.998 |
| 16:68074069:G:T | K282N | 0.998 |
| 16:68076658:C:A | P370H | 0.998 |
| 16:68078482:T:A | V403D | 0.998 |
| 16:68038114:G:C | A31P | 0.997 |
| 16:68054574:G:A | G89R | 0.997 |
| 16:68054574:G:C | G89R | 0.997 |
| 16:68054574:G:T | G89W | 0.997 |
| 16:68056392:A:G | N113D | 0.997 |
| 16:68056398:G:C | G115R | 0.997 |
| 16:68061075:G:A | G127R | 0.997 |
| 16:68061075:G:C | G127R | 0.997 |
| 16:68066360:G:A | C154Y | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000021461 (16:68064558 C>A,T), RS1000061433 (16:68074901 G>T), RS1000088000 (16:68066011 A>G), RS1000134505 (16:68074675 G>A), RS1000135250 (16:68029207 A>C), RS1000160049 (16:68045667 G>A), RS1000209731 (16:68048192 T>A), RS1000263589 (16:68045214 A>G), RS1000288415 (16:68031761 C>T), RS1000321413 (16:68055330 A>C,T), RS1000445110 (16:68031467 A>G,T), RS1000473246 (16:68048605 G>A,T), RS1000495184 (16:68037073 T>C), RS1000499244 (16:68064050 A>G), RS1000550224 (16:68046732 G>A)
Disease associations
OMIM: gene MIM:609707 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002539_84 | Schizophrenia | 2.000000e-08 |
| GCST006803_42 | Schizophrenia | 4.000000e-08 |
| GCST010002_113 | Refractive error | 2.000000e-14 |
| GCST010083_349 | Hemoglobin levels | 9.000000e-12 |
| GCST90002381_92 | Eosinophil count | 7.000000e-13 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004509 | hemoglobin measurement |
| EFO:0004842 | eosinophil count |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3879825 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
1 potent at pChembl≥5 of 1 total, top 1 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.80 | IC50 | 1600 | nM | CHEMBL3883534 |
PubChem BioAssay actives
1 with measured affinity, of 1 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| N-[4-(3-chloro-4-fluoroanilino)-7-methoxyquinazolin-6-yl]prop-2-enamide | 1337178: Inhibition of PF-06422899 binding to recombinant C-terminal FLAG-tagged DUS2L (unknown origin) expressed in HEK293T cells after 1 hr by gel-based ABPP assay | ic50 | 1.6000 | uM |
CTD chemical–gene interactions
30 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects expression, decreases expression | 2 |
| TAK-243 | increases sumoylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation | 1 |
| Atrazine | decreases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Ethyl Methanesulfonate | decreases expression | 1 |
| Methyl Methanesulfonate | decreases expression | 1 |
| Ozone | increases oxidation, increases abundance, affects cotreatment | 1 |
| Thiram | decreases expression | 1 |
| Tobacco Smoke Pollution | affects expression | 1 |
| Tretinoin | decreases expression | 1 |
| Urethane | decreases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
| Cadmium Chloride | increases abundance, increases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
| Lactic Acid | decreases expression | 1 |
| Acrylamide | decreases expression | 1 |
| Volatile Organic Compounds | affects cotreatment, increases oxidation | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3877215 | Binding | Inhibition of PF-06422899 binding to recombinant C-terminal FLAG-tagged DUS2L (unknown origin) expressed in HEK293T cells after 1 hr by gel-based ABPP assay | Non-kinase targets of protein kinase inhibitors. — Nat Rev Drug Discov |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E0U0 | Ubigene Hep G2 DUS2 KO | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.