DVL1

gene
On this page

Summary

DVL1 (dishevelled segment polarity protein 1, HGNC:3084) is a protein-coding gene on chromosome 1p36.33, encoding Segment polarity protein dishevelled homolog DVL-1 (O14640). Participates in Wnt signaling by binding to the cytoplasmic C-terminus of frizzled family members and transducing the Wnt signal to down-stream effectors.

DVL1, the human homolog of the Drosophila dishevelled gene (dsh) encodes a cytoplasmic phosphoprotein that regulates cell proliferation, acting as a transducer molecule for developmental processes, including segmentation and neuroblast specification. DVL1 is a candidate gene for neuroblastomatous transformation. The Schwartz-Jampel syndrome and Charcot-Marie-Tooth disease type 2A have been mapped to the same region as DVL1. The phenotypes of these diseases may be consistent with defects which might be expected from aberrant expression of a DVL gene during development.

Source: NCBI Gene 1855 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): autosomal dominant Robinow syndrome 2 (Definitive, GenCC) — +1 more curated relationship
  • GWAS associations: 3
  • Clinical variants (ClinVar): 847 total — 15 pathogenic, 7 likely-pathogenic
  • Phenotypes (HPO): 146
  • Druggable target: yes
  • MANE Select transcript: NM_001330311

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:3084
Approved symbolDVL1
Namedishevelled segment polarity protein 1
Location1p36.33
Locus typegene with protein product
StatusApproved
Ensembl geneENSG00000107404
Ensembl biotypeprotein_coding
OMIM601365
Entrez1855

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 10 protein_coding, 3 retained_intron

ENST00000378888, ENST00000378891, ENST00000472445, ENST00000631679, ENST00000632445, ENST00000633096, ENST00000634054, ENST00000874577, ENST00000911402, ENST00000954312, ENST00000954313, ENST00000954314, ENST00000954315

RefSeq mRNA: 2 — MANE Select: NM_001330311 NM_001330311, NM_004421

CCDS: CCDS22, CCDS81252

Canonical transcript exons

ENST00000378888 — 15 exons

ExonStartEnd
ENSE0000095518113420531342156
ENSE0000095518313404101340503
ENSE0000095518413402471340316
ENSE0000122487913395821339649
ENSE0000131614113416671341805
ENSE0000138817713392871339439
ENSE0000160495813385221338653
ENSE0000163798613379771338183
ENSE0000171378113382691338436
ENSE0000176292113400381340177
ENSE0000178430813397361339812
ENSE0000185796213488961349418
ENSE0000364210313423631342484
ENSE0000367293713426891342758
ENSE0000384792713352781336515

Expression profiles

Bgee: expression breadth ubiquitous, 290 present calls, max score 98.26.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 11.9803 / max 73.7123, expressed in 1786 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter IDTPM avgSamples expressed
975511.46341784
97560.5169289

Top tissues by expression

295 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
hindlimb stylopod muscleUBERON:000425298.26gold quality
gastrocnemiusUBERON:000138897.88gold quality
lower esophagus mucosaUBERON:003583497.75gold quality
muscle of legUBERON:000138397.25gold quality
skeletal muscle tissue of rectus abdominisUBERON:000451197.22gold quality
apex of heartUBERON:000209897.14gold quality
right frontal lobeUBERON:000281096.89gold quality
pancreatic ductal cellCL:000207996.80gold quality
body of tongueUBERON:001187696.54gold quality
muscle organUBERON:000163096.42gold quality
diaphragmUBERON:000110396.32gold quality
amygdalaUBERON:000187696.28gold quality
right hemisphere of cerebellumUBERON:001489096.11gold quality
right uterine tubeUBERON:000130295.98gold quality
nucleus accumbensUBERON:000188295.65gold quality
parotid glandUBERON:000183195.58gold quality
body of stomachUBERON:000116195.37gold quality
cerebellar hemisphereUBERON:000224595.37gold quality
left testisUBERON:000453395.37gold quality
right testisUBERON:000453495.36gold quality
cerebellar cortexUBERON:000212995.26gold quality
putamenUBERON:000187495.22gold quality
Brodmann (1909) area 9UBERON:001354095.15gold quality
skeletal muscle tissueUBERON:000113495.11gold quality
fundus of stomachUBERON:000116095.07gold quality
cingulate cortexUBERON:000302794.96gold quality
tendon of biceps brachiiUBERON:000818894.96gold quality
tibial nerveUBERON:000132394.87gold quality
body of pancreasUBERON:000115094.80gold quality
esophagus mucosaUBERON:000246994.77gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes4.20

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): NFKB

miRNA regulators (miRDB)

34 targeting DVL1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-5692A100.0074.406850
HSA-MIR-3163100.0077.238605
HSA-MIR-428299.9975.366408
HSA-MIR-4645-5P99.9865.811284
HSA-MIR-144-3P99.9473.982698
HSA-MIR-6780A-5P99.8866.692776
HSA-MIR-444799.8567.812900
HSA-MIR-76599.8468.242442
HSA-MIR-139-5P99.8069.501399
HSA-MIR-1273H-5P99.7766.322471
HSA-MIR-425599.7267.701541
HSA-MIR-30B-3P99.7065.762325
HSA-MIR-3689A-3P99.7065.732306
HSA-MIR-3689B-3P99.7065.712311
HSA-MIR-3689C99.7065.712311
HSA-MIR-6779-5P99.7065.762363
HSA-MIR-64699.6867.841645
HSA-MIR-486-3P99.5166.821901
HSA-MIR-467299.5071.582893
HSA-MIR-122B-5P99.4670.811457
HSA-MIR-508-5P99.4164.251248
HSA-MIR-450599.2767.812678
HSA-MIR-4685-5P99.2565.991563
HSA-MIR-6837-5P99.2565.471632
HSA-MIR-578799.2267.862628
HSA-MIR-6846-5P98.8165.861121
HSA-MIR-6848-5P98.8165.491126
HSA-MIR-4755-3P98.7765.591915
HSA-MIR-423-5P98.6967.481522
HSA-MIR-3184-5P98.5667.131491

Literature-anchored findings (GeneRIF, showing 40)

  • The DVL1 gene spans a region of approximately 13.8 kb with 15 exons and six rare sequence variations. None of these had any association with late onset AD. (PMID:11803455)
  • CKI epsilon-dependent phosphorylation of Dvl enhances the formation of a complex of Dvl-1 with Frat-1 and this complex leads to the activation of Wnt-3a-induced accumulation of beta-catenin (PMID:12556519)
  • Amplification and increased expression of the DVL-1 gene is associated with breast carcinogenesis (PMID:12824876)
  • amplification and increased expression of the DVL-1 gene may play some role in the development of a portion of human cervical squamous cell cancer through derangement of the Wnt signaling pathway (PMID:12883684)
  • interaction among misfolded SOD1, NEDL1, translocon-associated protein-delta, and Dishevelled-1 forms a ubiquitinated protein complex that is included in potentially cytotoxic protein aggregates (PMID:14684739)
  • Ccd1 drastically inhibited JNK activation both by Axin and by Dvl. (PMID:15262978)
  • DVL1 was overexpressed in prostate cancer and its overexpression might be related to prostate cancer progression through the Wnt/beta-catenin pathway. (PMID:16457155)
  • BMP-2 antagonizes Wnt-3a signaling in osteoblast progenitors by promoting an interaction between Smad1 and Dvl-1 that restricts beta-catenin activation (PMID:16621789)
  • The expression of Dishevelleds in mammalian cells provide an estimate of the relative cellular abundance of each Dvl. (PMID:18093802)
  • a carboxyl-terminal binding partner, Dvl, has a role in activation of Daam1 (PMID:18162551)
  • Our results reveal a mechanism by which nuclear Dvl cooperates with c-Jun to regulate gene transcription stimulated by the canonical Wnt signaling pathway. (PMID:18347071)
  • the C6 motif seems to reduce the interaction of Axin with Dvl-1. (PMID:18632848)
  • Expression of Dvl-1, Dvl-2 and Dvl-3, is common in non-small cell lung cancer (PMID:18692936)
  • These results suggest that membrane accumulation of Par1b induced by Dvl is regulated by its phosphorylation status, which is important for Par1b to regulate the microtubule dynamics. (PMID:18760999)
  • Dvl directly interacted with and activated PI4KII alpha by increasing its V(max) for ATP and PtdIns. In addition, Dvl regulated PI4KII alpha and PIP5KI via different domains. (PMID:19561074)
  • Mutations in the human naked cuticle homolog NKD1 found in colorectal cancer alter Wnt/Dvl/beta-catenin signaling (PMID:19956716)
  • NKD2 antagonizes Wnt signaling: myristoylated NKD2 interacts with Dvl-1 at the plasma membrane, and this interaction leads to their mutual ubiquitin-mediated proteasomal degradation. (PMID:20177058)
  • Dishevelled signals through LRP5/6 in human cells and Drosophila embryos. (PMID:20388731)
  • the Hippo pathway restricts Wnt/beta-Catenin signaling by promoting an interaction between TAZ and DVL in the cytoplasm (PMID:20412773)
  • Study demonstrate that the DIX domains of Dvl and Axin are expressed noticeably in a multi-cistronic system but not in a mono-cistronic system. (PMID:20846493)
  • TMEM88 associates with Dvl proteins and regulates Wnt signaling in a context-dependent manner (PMID:21044957)
  • 14-3-3beta interacts with human Dapper1, attenuating the ability of hDpr1 to promote Dishevelled (Dvl) degradation, thus enhancing Wnt signaling (PMID:21262972)
  • Data reveal a novel Rac1-dependent signalling pathway that, through Nedd4-mediated ubiquitylation of Dvl1, stimulates the maturation of epithelial cell-cell contacts. (PMID:22467858)
  • findings did not provide evidence for the implication of DVL1 in the pathogenesis of human NTDs. (PMID:23836490)
  • Study showed an association of DVL-1 and DVL-3 with Hirschsprung’s disease. (PMID:24040443)
  • DVL1 was localized in the cytoplasm of CRC cells. (PMID:24129181)
  • Authors propose a model for Rac1 activation where SIRT1/2 positively modulates the DVL/TIAM1/Rac1 axis and promotes sustained pathway activation. (PMID:24362520)
  • DVL is a master regulator of FZD6/G-protein signaling (PMID:24500924)
  • Dvl overexpression may contribute to the malignant proliferation and invasion of human glioma. (PMID:25043531)
  • Results show that coexpression of IQGAP1 and Dvl in the cytoplasm and nucleus was correlated with the lymph nodal metastase and poor prognosis of non-small cell lung cancer. (PMID:25436461)
  • silencing DVL1 sensitized A2780/Taxol cells to paclitaxel, by down-regulating AKT/GSK-3beta/beta-catenin signalling, providing a novel strategy for chemosensitization of ovarian cancer to paclitaxel-induced cytotoxicity. (PMID:25643607)
  • Mutations in DVL1 cause an osteosclerotic form of Robinow syndrome, with the osteosclerosis possibly the result of an interaction between the wild-type and mutant alleles, leading to elevated canonical Wnt signaling. (PMID:25817014)
  • DVL1 frameshift mutations clustering in the penultimate exon cause autosomal-dominant Robinow syndrome. (PMID:25817016)
  • Data indicate Dishevelled (DVL) as a dual function adaptor to recruit negative regulators ZNRF3/RNF43 to Wnt receptors to ensure proper control of pathway activity. (PMID:25891077)
  • TMEM88 stimulated triple negative breast cancer cell invasion by interacting with DVLl. (PMID:26325443)
  • Specific -1 frameshift variants in the penultimate exon of DVL1 cause autosomal-dominant Robinow syndrome. (PMID:26924530)
  • Data show that dishevelled proteins DVL1, 2 and 3 were exclusively expressed in chronic lymphatic leukaemia (CLL) cells as compared to normal peripheral blood mononuclear cells (PBMCs). (PMID:27086035)
  • These results identify USP4 as a novel regulator of Dvl in Wnt/beta-catenin signal and show its involvement in Wnt3a-induced osteoblast differentiation (PMID:27128386)
  • Data show that receptor for activated C kinase 1 (RACK1) interacts with Dishevelled (Dvl) proteins and promotes their lysosomal degradation, and this effect is enhanced by autophagy induction. (PMID:27129200)
  • Lack of DVL prevents NEK2-controlled dissolution of loose centrosomal linker and subsequent centrosomal separation. Increased DVL levels, in contrast, sequester centrosomal NEK2 and mimic monopolar spindle defects induced by a dominant negative version of this kinase. (PMID:27486244)

Cross-species orthologs

9 orthologs

OrganismSymbolGene ID
danio_reriodvl1aENSDARG00000010515
danio_reriodvl1bENSDARG00000055552
danio_reriosi:ch73-236e11.2ENSDARG00000095919
mus_musculusDvl1ENSMUSG00000029071
rattus_norvegicusDvl1ENSRNOG00000019423
drosophila_melanogasterdshFBGN0000499
caenorhabditis_elegansWBGENE00001101
caenorhabditis_elegansWBGENE00001102
caenorhabditis_elegansWBGENE00003241

Paralogs (3): DVL2 (ENSG00000004975), DIXDC1 (ENSG00000150764), DVL3 (ENSG00000161202)

Protein

Protein identifiers

Segment polarity protein dishevelled homolog DVL-1O14640 (reviewed: O14640)

Alternative names: DSH homolog 1

All UniProt accessions (3): O14640, A0A0J9YWZ5, A0A0J9YYK1

UniProt curated annotations — full annotation on UniProt →

Function. Participates in Wnt signaling by binding to the cytoplasmic C-terminus of frizzled family members and transducing the Wnt signal to down-stream effectors. Plays a role both in canonical and non-canonical Wnt signaling. Plays a role in the signal transduction pathways mediated by multiple Wnt genes. Required for LEF1 activation upon WNT1 and WNT3A signaling. DVL1 and PAK1 form a ternary complex with MUSK which is important for MUSK-dependent regulation of AChR clustering during the formation of the neuromuscular junction (NMJ).

Subunit / interactions. Interacts with CXXC4. Interacts (via PDZ domain) with NXN. Interacts with BRD7 and INVS. Interacts (via PDZ domain) with VANGL1 and VANGL2 (via C-terminus). Interacts with ARRB1; the interaction is enhanced by phosphorylation of DVL1. Interacts with CYLD. Interacts (via PDZ domain) with RYK. Self-associates (via DIX domain) and forms higher homooligomers. Interacts (via PDZ domain) with DACT1 and FZD7, where DACT1 and FZD7 compete for the same binding site. Interacts (via DEP domain) with MUSK; the interaction is direct and mediates the formation a DVL1, MUSK and PAK1 ternary complex involved in AChR clustering. Interacts (via PDZ domain) with TMEM88. Interacts with DCDC2. Interacts with FOXK2. Interacts with PKD1 (via extracellular domain). Interacts (via PDZ domain) with CCDC88C/DAPLE; competes with CCDC88C for binding to frizzled receptor FZD7 and dissociates from CCDC88C following initiation of non-canonical Wnt signaling when CCDC88C displaces DVL1 from ligand-activated FZD7.

Subcellular location. Cell membrane. Cytoplasm. Cytosol. Cytoplasmic vesicle.

Post-translational modifications. Ubiquitinated; undergoes both ‘Lys-48’-linked ubiquitination, leading to its subsequent degradation by the ubiquitin-proteasome pathway, and ‘Lys-63’-linked ubiquitination. The interaction with INVS is required for ubiquitination. Deubiquitinated by CYLD, which acts on ‘Lys-63’-linked ubiquitin chains.

Disease relevance. Robinow syndrome, autosomal dominant 2 (DRS2) [MIM:616331] A rare skeletal dysplasia syndrome characterized by dysmorphic features resembling a fetal face, mesomelic limb shortening, hypoplastic external genitalia in males, costovertebral segmentation defects, and renal anomalies. The disease is caused by variants affecting the gene represented in this entry.

Domain organisation. The DIX domain promotes homooligomerization. The DEP domain mediates interaction with the cell membrane.

Similarity. Belongs to the DSH family.

Isoforms (2)

UniProt IDNamesCanonical?
O14640-11yes
O14640-22

RefSeq proteins (2): NP_001317240, NP_004412 (=MANE)

Domains & families (InterPro)

IDNameType
IPR000591DEP_domDomain
IPR001158DIXDomain
IPR001478PDZDomain
IPR003351Dishevelled_protein_domDomain
IPR008339Dishevelled_famFamily
IPR015506Dsh/Dvl-relFamily
IPR024580Dishevelled_C-domDomain
IPR029071Ubiquitin-like_domsfHomologous_superfamily
IPR036034PDZ_sfHomologous_superfamily
IPR036388WH-like_DNA-bd_sfHomologous_superfamily
IPR036390WH_DNA-bd_sfHomologous_superfamily
IPR038207DIX_dom_sfHomologous_superfamily

Pfam: PF00595, PF00610, PF00778, PF02377, PF12316

UniProt features (25 total): compositionally biased region 7, strand 6, domain 3, sequence conflict 2, helix 2, region of interest 2, chain 1, modified residue 1, splice variant 1

Structure

Experimental structures (PDB)

3 structures.

PDBMethodResolution (Å)
6LCBX-RAY DIFFRACTION1.4
6TTKX-RAY DIFFRACTION2.38
6LCAX-RAY DIFFRACTION2.4

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-O14640-F160.700.19

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (1): 194

Function

Pathways and Gene Ontology

Reactome pathways

8 pathways

IDPathway
R-HSA-201681TCF dependent signaling in response to WNT
R-HSA-201688WNT mediated activation of DVL
R-HSA-4086400PCP/CE pathway
R-HSA-4641258Degradation of DVL
R-HSA-4641262Disassembly of the destruction complex and recruitment of AXIN to the membrane
R-HSA-5368598Negative regulation of TCF-dependent signaling by DVL-interacting proteins
R-HSA-5663220RHO GTPases Activate Formins
R-HSA-9673324WNT5:FZD7-mediated leishmania damping

MSigDB gene sets: 0 (showing top):

GO Biological Process (41): heart looping (GO:0001947), outflow tract morphogenesis (GO:0003151), regulation of DNA-templated transcription (GO:0006355), neurotransmitter secretion (GO:0007269), axon guidance (GO:0007411), neuromuscular junction development (GO:0007528), positive regulation of neuron projection development (GO:0010976), synaptic vesicle exocytosis (GO:0016079), neural tube development (GO:0021915), convergent extension involved in neural plate elongation (GO:0022007), cytoplasmic microtubule organization (GO:0031122), positive regulation of proteasomal ubiquitin-dependent protein catabolic process (GO:0032436), regulation of protein localization (GO:0032880), protein localization to nucleus (GO:0034504), social behavior (GO:0035176), protein localization to microtubule (GO:0035372), intracellular signal transduction (GO:0035556), non-canonical Wnt signaling pathway (GO:0035567), receptor clustering (GO:0043113), positive regulation of transcription by RNA polymerase II (GO:0045944), collateral sprouting (GO:0048668), axon extension (GO:0048675), dendrite morphogenesis (GO:0048813), synapse organization (GO:0050808), protein stabilization (GO:0050821), canonical Wnt signaling pathway (GO:0060070), Wnt signaling pathway, planar cell polarity pathway (GO:0060071), prepulse inhibition (GO:0060134), dendritic spine morphogenesis (GO:0060997), skeletal muscle acetylcholine-gated channel clustering (GO:0071340), cochlea morphogenesis (GO:0090103), presynapse assembly (GO:0099054), regulation of postsynapse organization (GO:0099175), positive regulation of neuron projection arborization (GO:0150012), positive regulation of protein localization to presynapse (GO:1905386), regulation of synaptic vesicle exocytosis (GO:2000300), positive regulation of excitatory postsynaptic potential (GO:2000463), axonogenesis (GO:0007409), Wnt signaling pathway (GO:0016055), convergent extension involved in organogenesis (GO:0060029)

GO Molecular Function (7): frizzled binding (GO:0005109), beta-catenin binding (GO:0008013), enzyme binding (GO:0019899), protein kinase binding (GO:0019901), small GTPase binding (GO:0031267), identical protein binding (GO:0042802), protein binding (GO:0005515)

GO Cellular Component (22): cytosol (GO:0005829), microtubule (GO:0005874), postsynaptic density (GO:0014069), lateral plasma membrane (GO:0016328), clathrin-coated vesicle (GO:0030136), growth cone (GO:0030426), cytoplasmic vesicle (GO:0031410), neuron projection (GO:0043005), neuronal cell body (GO:0043025), dendritic spine (GO:0043197), synapse (GO:0045202), Schaffer collateral - CA1 synapse (GO:0098685), presynapse (GO:0098793), glutamatergic synapse (GO:0098978), neuronal dense core vesicle (GO:0098992), Wnt signalosome (GO:1990909), cytoplasm (GO:0005737), plasma membrane (GO:0005886), microtubule cytoskeleton (GO:0015630), membrane (GO:0016020), axon (GO:0030424), dendrite (GO:0030425)

Reactome top-level categories

Rollup of top-5 pathways:

CategoryPathways
TCF dependent signaling in response to WNT4
Signaling by WNT1
Beta-catenin independent WNT signaling1
RHO GTPase Effectors1
Killing mechanisms1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure5
protein binding3
synapse3
establishment of localization in cell2
presynapse2
signal release from synapse2
intracellular anatomical structure2
plasma membrane2
cytoplasm2
embryonic heart tube morphogenesis1
determination of heart left/right asymmetry1
heart morphogenesis1
anatomical structure morphogenesis1
DNA-templated transcription1
regulation of gene expression1
regulation of RNA biosynthetic process1
neurotransmitter transport1
chemical synaptic transmission1
axonogenesis1
neuron projection guidance1
synapse organization1
regulation of neuron projection development1
neuron projection development1
positive regulation of cell projection organization1
neurotransmitter secretion1
regulated exocytosis1
vesicle-mediated transport in synapse1
synaptic vesicle cycle1
nervous system development1
tube development1
chordate embryonic development1
epithelium development1
neural plate elongation1
convergent extension involved in gastrulation1
convergent extension involved in organogenesis1
microtubule cytoskeleton organization1
supramolecular fiber organization1
regulation of proteasomal ubiquitin-dependent protein catabolic process1
proteasome-mediated ubiquitin-dependent protein catabolic process1
positive regulation of proteasomal protein catabolic process1

Protein interactions and networks

STRING

2659 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
DVL1AXIN1O15169999
DVL1DAAM1Q9Y4D1998
DVL1LRP5O75197997
DVL1GSK3BP49841995
DVL1LRP6O75581994
DVL1INVSQ9Y283990
DVL1CCDC88CQ9P219983
DVL1VANGL2Q9ULK5976
DVL1ANKRD6Q9Y2G4973
DVL1CTNNB1P35222973
DVL1FZD7O75084969
DVL1VANGL1Q8TAA9961
DVL1CXXC5Q7LFL8960
DVL1FRAT1Q92837954
DVL1DACT1Q9NYF0953

IntAct

120 interactions, top by confidence:

ABTypeScore
DVL1Axin1psi-mi:“MI:0915”(physical association)0.800
Axin1DVL1psi-mi:“MI:0407”(direct interaction)0.800
DVL1Axin1psi-mi:“MI:0407”(direct interaction)0.800
Axin1DVL1psi-mi:“MI:0915”(physical association)0.800
DVL1Axin1psi-mi:“MI:0403”(colocalization)0.800
CSNK1EDVL1psi-mi:“MI:0915”(physical association)0.640
DVL1CSNK1Epsi-mi:“MI:0407”(direct interaction)0.640
CSNK1EDVL1psi-mi:“MI:0217”(phosphorylation reaction)0.640
DVL3DVL1psi-mi:“MI:0915”(physical association)0.630
DVL1DVL3psi-mi:“MI:0915”(physical association)0.630
DVL3DVL1psi-mi:“MI:0407”(direct interaction)0.630
DVL1DVL2psi-mi:“MI:0915”(physical association)0.620
DVL1DVL2psi-mi:“MI:0914”(association)0.620
DVL1APCpsi-mi:“MI:0915”(physical association)0.620
APCDVL1psi-mi:“MI:0914”(association)0.620
Cxxc4DVL1psi-mi:“MI:0915”(physical association)0.610
Cxxc4DVL1psi-mi:“MI:0407”(direct interaction)0.610
DVL1Cxxc4psi-mi:“MI:0403”(colocalization)0.610
PLK1C1orf226psi-mi:“MI:0914”(association)0.560
SCYL2DVL1psi-mi:“MI:0915”(physical association)0.540

BioGRID (170): NCK2 (Two-hybrid), TRIM69 (Two-hybrid), WWTR1 (Affinity Capture-Western), FLNC (Affinity Capture-MS), DVL2 (Affinity Capture-MS), DVL1 (Affinity Capture-MS), DVL1 (Affinity Capture-MS), DVL1 (Proximity Label-MS), DVL1 (Proximity Label-MS), DVL1 (Proximity Label-MS), DVL1 (Proximity Label-MS), DVL1 (Proximity Label-MS), DVL1 (Proximity Label-MS), DVL1 (Proximity Label-MS), DVL1 (Proximity Label-MS)

ESM2 similar proteins: A0A0G2K2P5, A0JNJ1, B1WAP7, G9CGD6, O14640, O75122, O88382, O95049, O97758, P34908, P39447, P51141, P54792, P70175, Q05AS8, Q07157, Q16825, Q5F488, Q5IS48, Q5SGD7, Q5TCQ9, Q5XI81, Q61062, Q62136, Q62728, Q62936, Q6DKE2, Q6P9H4, Q6ZM86, Q812E4, Q86UL8, Q8BMA3, Q8IVH8, Q8JHI3, Q8TDW5, Q920B0, Q924I2, Q925T6, Q92997, Q95168

Diamond homologs: A0A8C0TYJ0, B1WAP7, G5ECY0, O14640, O14641, O15018, O15169, O35625, O35889, O42400, O54824, O55164, O70239, O70240, O75970, O88566, P31007, P31016, P51140, P51141, P51142, P54792, P55196, P57094, P57105, P70175, P78352, Q05AS8, Q12923, Q12959, Q14005, Q155Q3, Q15700, Q22227, Q28C55, Q2VUH7, Q3T0C9, Q5IS48, Q5PYH5, Q5PYH6

SIGNOR signaling

41 interactions.

AEffectBMechanism
RYKup-regulatesDVL1binding
DVL1“up-regulates activity”CTNNB1binding
FZD3“up-regulates activity”DVL1binding
INVSdown-regulatesDVL1ubiquitination
SMAD1up-regulatesDVL1binding
DVL1“up-regulates activity”LRP6binding
DVL1“down-regulates activity”APCbinding
DVL1“down-regulates activity”GSK3Bbinding
WNT5A“up-regulates activity”DVL1
DVL1up-regulatesJUNbinding
WNT3A“up-regulates activity”DVL1
DVL1“up-regulates activity”DAAM1binding
DVL1“up-regulates activity”RAC1binding
ANAPC2down-regulatesDVL1binding
WWTR1down-regulatesDVL1binding
FZD6“up-regulates activity”DVL1binding
DVL1“up-regulates activity”RAC1
DVL1up-regulatesRND1
SDC4up-regulatesDVL1binding
YAP1down-regulatesDVL1binding
CSNK1E“up-regulates activity”DVL1phosphorylation
DVL1“down-regulates activity”GSK3B/Axin/APCbinding
Frizzled“up-regulates activity”DVL1binding
FZD1“up-regulates activity”DVL1binding
FZD4“up-regulates activity”DVL1binding
FZD2“up-regulates activity”DVL1binding
FZD5“up-regulates activity”DVL1binding
DVL1“up-regulates activity”RHOAbinding

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 88 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
PCP/CE pathway527.8×8e-05
Loss of Nlp from mitotic centrosomes617.6×8e-05
Loss of proteins required for interphase microtubule organization from the centrosome617.6×8e-05
AURKA Activation by TPX2616.9×9e-05
Anchoring of the basal body to the plasma membrane816.8×6e-06
Recruitment of mitotic centrosome proteins and complexes615.1×2e-04
Regulation of PLK1 Activity at G2/M Transition614.1×2e-04
Recruitment of NuMA to mitotic centrosomes612.9×3e-04

GO biological processes:

GO termPartnersFoldFDR
centriole replication547.6×3e-05
Wnt signaling pathway, planar cell polarity pathway529.6×2e-04
cilium assembly109.6×3e-05

Disease & clinical

Clinical variants and AI predictions

ClinVar

847 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic15
Likely pathogenic7
Uncertain significance333
Likely benign326
Benign86

Top pathogenic / likely-pathogenic (22)

Variant IDHGVSClassification
1335929NM_001330311.2(DVL1):c.1131C>A (p.Tyr377Ter)Pathogenic
208043NM_001330311.2(DVL1):c.1645_1646delinsC (p.Phe549fs)Pathogenic
208044NM_001330311.2(DVL1):c.1580_1592del (p.His527fs)Pathogenic
208045NM_001330311.2(DVL1):c.1594del (p.Trp532fs)Pathogenic
208046NM_001330311.2(DVL1):c.1583del (p.Pro528fs)Pathogenic
208047NM_001330311.2(DVL1):c.1690del (p.Ser564fs)Pathogenic
208048NM_001330311.2(DVL1):c.1604del (p.Gly535fs)Pathogenic
208049NM_001330311.2(DVL1):c.1637del (p.Pro546fs)Pathogenic
208050NM_001330311.2(DVL1):c.1651_1658delinsG (p.Pro551fs)Pathogenic
219223NM_001330311.2(DVL1):c.1598del (p.Pro533fs)Pathogenic
3764194NM_001330311.2(DVL1):c.1695del (p.Ser567fs)Pathogenic
520999NM_001330311.2(DVL1):c.1579del (p.His527fs)Pathogenic
807594NM_001330311.2(DVL1):c.1547del (p.Thr516fs)Pathogenic
981467NM_001330311.2(DVL1):c.1667del (p.Pro556fs)Pathogenic
984981NM_001330311.2(DVL1):c.1631del (p.Gly544fs)Pathogenic
1709442NM_001330311.2(DVL1):c.363-1G>CLikely pathogenic
373812NM_001330311.2(DVL1):c.1324_1331dup (p.Val445fs)Likely pathogenic
488045NM_001330311.2(DVL1):c.1687_1691dup (p.Ser564fs)Likely pathogenic
488046NM_001330311.2(DVL1):c.1698del (p.Ser567fs)Likely pathogenic
524041NM_001330311.2(DVL1):c.1694_1706del (p.Thr565fs)Likely pathogenic
931630NM_001330311.2(DVL1):c.1682_1683dup (p.Ser562fs)Likely pathogenic
981468NM_001330311.2(DVL1):c.1715-1G>ALikely pathogenic

SpliceAI

2137 predictions. Top by Δscore:

VariantEffectΔscore
1:1337065:C:CTacceptor_gain1.0000
1:1338267:A:ACdonor_gain1.0000
1:1338268:C:CCdonor_gain1.0000
1:1338268:CTG:Cdonor_gain1.0000
1:1338514:CCACT:Cdonor_loss1.0000
1:1338515:CACTC:Cdonor_loss1.0000
1:1338516:ACTCA:Adonor_loss1.0000
1:1338517:CT:Cdonor_loss1.0000
1:1338518:TCA:Tdonor_loss1.0000
1:1338519:CA:Cdonor_loss1.0000
1:1338520:A:ACdonor_gain1.0000
1:1338521:C:CCdonor_gain1.0000
1:1338521:C:CTdonor_loss1.0000
1:1338649:CAGCT:Cacceptor_gain1.0000
1:1338650:AGCT:Aacceptor_gain1.0000
1:1338651:GCTC:Gacceptor_loss1.0000
1:1338652:CT:Cacceptor_gain1.0000
1:1338654:C:CCacceptor_gain1.0000
1:1338654:CTG:Cacceptor_loss1.0000
1:1338657:C:CTacceptor_gain1.0000
1:1338658:A:Tacceptor_gain1.0000
1:1338662:C:CTacceptor_gain1.0000
1:1339285:A:ACdonor_gain1.0000
1:1339286:C:CCdonor_gain1.0000
1:1339452:C:CTacceptor_gain1.0000
1:1339494:CAGGG:Cacceptor_gain1.0000
1:1339734:AC:Adonor_gain1.0000
1:1339735:CC:Cdonor_gain1.0000
1:1339810:CAC:Cacceptor_gain1.0000
1:1339813:CT:Cacceptor_loss1.0000

AlphaMissense

4555 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
1:1338297:G:CC493W1.000
1:1338309:G:CF489L1.000
1:1338309:G:TF489L1.000
1:1338310:A:GF489S1.000
1:1338311:A:GF489L1.000
1:1338436:C:TG447E1.000
1:1338522:C:AG447W1.000
1:1338522:C:GG447R1.000
1:1338522:C:TG447R1.000
1:1338530:G:TA444D1.000
1:1338551:A:GL437P1.000
1:1338551:A:TL437H1.000
1:1338553:C:AW436C1.000
1:1338553:C:GW436C1.000
1:1338555:A:GW436R1.000
1:1338555:A:TW436R1.000
1:1338560:C:GR434P1.000
1:1339629:G:TA336D1.000
1:1339632:A:TV335E1.000
1:1339638:A:GL333P1.000
1:1339638:A:TL333H1.000
1:1339760:A:GL321P1.000
1:1339760:A:TL321Q1.000
1:1339772:G:TA317D1.000
1:1339796:A:GF309S1.000
1:1340039:T:GQ303P1.000
1:1340042:A:GL302P1.000
1:1340045:A:CL301W1.000
1:1340045:A:GL301S1.000
1:1340051:T:AD299V1.000

dbSNP variants (sampled 300 via entrez): RS1000219681 (1:1346469 G>A), RS1000310620 (1:1338943 A>C), RS1000324436 (1:1342331 G>A), RS1000892093 (1:1336952 G>C), RS1001146154 (1:1349371 C>T), RS1001267916 (1:1336813 G>A,C), RS1001375231 (1:1339185 G>A), RS1001515279 (1:1349709 G>C), RS1001707902 (1:1335278 T>G), RS1001724002 (1:1346855 C>T), RS1001856223 (1:1337407 A>G,T), RS1001982494 (1:1346082 C>T), RS1002457796 (1:1345893 C>A,T), RS1002468853 (1:1343341 G>A), RS1002563932 (1:1343553 T>C)

Disease associations

OMIM: gene MIM:601365 | disease phenotypes: MIM:616331, MIM:180700, MIM:618300

GenCC curated gene-disease

DiseaseClassificationInheritance
autosomal dominant Robinow syndrome 2DefinitiveAutosomal dominant
autosomal dominant Robinow syndromeSupportiveAutosomal dominant

Mondo (5): autosomal dominant Robinow syndrome 2 (MONDO:0014591), autosomal dominant Robinow syndrome 1 (MONDO:0024455), intellectual disability (MONDO:0001071), ciliary dyskinesia, primary, 40 (MONDO:0032664), autosomal dominant Robinow syndrome (MONDO:0008389)

Orphanet (3): Autosomal dominant Robinow syndrome (Orphanet:3107), Robinow syndrome (Orphanet:97360), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)

HPO phenotypes

146 total (30 of 146 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000023Inguinal hernia
HP:0000028Cryptorchidism
HP:0000036Abnormal penis morphology
HP:0000039Epispadias
HP:0000047Hypospadias
HP:0000054Micropenis
HP:0000059Hypoplastic labia majora
HP:0000060Clitoral hypoplasia
HP:0000064Hypoplastic labia minora
HP:0000075Renal duplication
HP:0000126Hydronephrosis
HP:0000154Wide mouth
HP:0000158Macroglossia
HP:0000164Abnormality of the dentition
HP:0000168Abnormality of the gingiva
HP:0000175Cleft palate
HP:0000185Cleft soft palate
HP:0000189Narrow palate
HP:0000200Short lingual frenulum
HP:0000202Orofacial cleft
HP:0000207Triangular mouth
HP:0000212Gingival overgrowth
HP:0000215Thick upper lip vermilion
HP:0000218High palate
HP:0000219Thin upper lip vermilion
HP:0000256Macrocephaly
HP:0000260Wide anterior fontanel
HP:0000272Malar flattening
HP:0000278Retrognathia

GWAS associations

3 associations (top):

StudyTraitp-value
GCST004131_103Inflammatory bowel disease2.000000e-07
GCST004133_40Ulcerative colitis3.000000e-06
GCST009957_1Nicotine dependence4.000000e-06

MeSH disease descriptors (1)

DescriptorNameTree numbers
D008607Intellectual DisabilityC10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL6027 (SINGLE PROTEIN)

PharmGKB: 1 entry (VIP=true, CPIC=false)

ChEMBL bioactivities

1 potent at pChembl≥5 of 10 total, top 1 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
6.73Kd186nMCHEMBL3814692

PubChem BioAssay actives

1 with measured affinity, of 63 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
2-[2-bromo-6-ethoxy-4-[(Z)-(3-oxo-1-benzothiophen-2-ylidene)methyl]phenoxy]acetic acid1305262: Binding affinity to His-tagged Dvl-1 PDZ domain (247 to 337 residues) (unknown origin) expressed in Escherichia coli BL21 (DE3) by fluorescence spectroscopykd0.1860uM

CTD chemical–gene interactions

43 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
bisphenol Aaffects expression, affects cotreatment, increases methylation2
Estradiolaffects expression, increases expression2
triphenyl phosphateaffects expression1
lead acetateincreases expression1
trichostatin Aaffects cotreatment, decreases expression1
beta-lapachoneincreases expression1
11-nor-delta(9)-tetrahydrocannabinol-9-carboxylic acidaffects methylation, increases abundance1
sodium arseniteincreases expression1
perfluorooctanoic aciddecreases expression1
tamibarotenedecreases expression1
perfluorooctane sulfonic aciddecreases expression1
CGP 52608affects binding, increases reaction1
perfluoro-n-nonanoic aciddecreases expression1
K 7174increases expression1
perfluorohexanesulfonic aciddecreases expression1
PKF115-584decreases expression1
(+)-JQ1 compounddecreases expression1
4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic aciddecreases expression1
Resveratrolaffects cotreatment, decreases expression1
Decitabineaffects cotreatment, decreases expression1
Sunitinibincreases expression1
Fulvestrantincreases methylation, affects cotreatment1
Cannabinoidsaffects methylation, increases abundance1
Carmustinedecreases expression1
Cisplatindecreases expression1
Curcumindecreases expression1
Doxorubicindecreases expression1
Estrogensaffects cotreatment, increases expression1
Malathionincreases expression1
Niclosamideincreases expression1

ChEMBL screening assays

11 unique, capped per target: 10 binding, 1 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1227548BindingInhibition of Dvl1 overexpressed in human HEK293S assessed as inhibition of beta-casein/TCF reporter signaling at 20 uM after 18 hrs by TOPglow reporter assayInhibition of Wnt signaling by Dishevelled PDZ peptides. — Nat Chem Biol
CHEMBL931111FunctionalAntagonist activity at human Dvl1 assessed as inhibition of interaction between Dvl1 PDZ domain and Fz7 PDZ domain by alphaScreen assayIndole-2-amide based biochemical antagonist of Dishevelled PDZ domain interaction down-regulates Dishevelled-driven Tcf transcriptional activity. — Bioorg Med Chem Lett

Cellosaurus cell lines

1 cell lines: 1 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_E0C7Ubigene HeLa DVL1 KOCancer cell lineFemale

Clinical trials (associated diseases)

197 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT05657860PHASE4COMPLETEDGuanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome
NCT05744479PHASE4RECRUITINGMetformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability
NCT06107829PHASE4WITHDRAWNValbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities
NCT06997198PHASE4NOT_YET_RECRUITINGDeutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities
NCT02270736PHASE3COMPLETEDClinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability
NCT02304302PHASE2COMPLETEDDown Syndrome Memantine Follow-up Study
NCT03862950PHASE2COMPLETEDA Trial of Metformin in Individuals With Fragile X Syndrome (Met)
NCT04529226PHASE2UNKNOWNStudy to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis
NCT04821856PHASE2COMPLETEDEvaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability
NCT05273320PHASE1COMPLETEDClinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities
NCT05301361PHASE1ENROLLING_BY_INVITATIONSensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities
NCT06016764PHASE1COMPLETEDUse of MRI and cTBS for Catatonia in Autism
NCT06586827PHASE1COMPLETEDImpact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD
NCT07531940PHASE1NOT_YET_RECRUITINGEscalating Doses of Memantine in Down Syndrome (MEDS-123)
NCT03479476PHASE2/PHASE3COMPLETEDA Trial of Metformin in Individuals With Fragile X Syndrome
NCT02616796PHASE1/PHASE2COMPLETEDEffects of Social Gaze Training on Brain and Behavior in Fragile X Syndrome
NCT06860672EARLY_PHASE1RECRUITINGClinical Trial of the Dual Vector Base Editor for the Treatment of the CHD3-R1025W Mutation
NCT00597948Not specifiedCOMPLETEDHealthy Lifestyles for People With Intellectual Disabilities
NCT01087320Not specifiedRECRUITINGGenome Medical Sequencing for Gene Discovery
NCT01652963Not specifiedUNKNOWNPicture-based Computerised Assessment and Training of Cognitive Behaviour Therapy Skills
NCT01695395Not specifiedCOMPLETEDMental Health Care Provision for Adults With Intellectual Disability and a Mental Disorder
NCT01867554Not specifiedCOMPLETEDResearch and Characterization of New Genes Involved in Intellectual Disability
NCT01915381Not specifiedCOMPLETEDImproving Adherence Healthy Lifestyle With a Smartphone Application Based on Adults With Intellectual Disabilities
NCT01988623Not specifiedCOMPLETEDPivotal Response Treatment for Individuals With Intellectual Disabilities
NCT02099773Not specifiedCOMPLETEDSupport Staff-client Interactions With Augmentative and Alternative Communication
NCT02136849Not specifiedCOMPLETEDInter-regional Project of the Great Western Exploration Approach for Exome Molecular Causes Severe Intellectual Disability Isolated or Syndromic
NCT02225041Not specifiedCOMPLETEDSedation Strategy and Cognitive Outcome After Critical Illness in Early Childhood
NCT02414438Not specifiedCOMPLETEDEstablishing the Clinical Utility of First StepDx PLUS and NextStepDx PLUS Study
NCT02451761Not specifiedCOMPLETEDApparently Balanced Chromosomal Translocation/ Next-generation Sequencing/ Intellectual Disability
NCT02461420Not specifiedACTIVE_NOT_RECRUITINGMapping the Genotype, Phenotype, and Natural History of Phelan-McDermid Syndrome
NCT02461459Not specifiedACTIVE_NOT_RECRUITINGAutism Spectrum Disorder (ASD) and Intellectual Disability (ID) Determinants in Tuberous Sclerosis Complex (TSC)
NCT02486081Not specifiedCOMPLETEDDevelopment and Application-Smart Football for Movement Evaluation and Training in the Special Education Population
NCT02504502Not specifiedCOMPLETEDEnhancing Genomic Laboratory Reports to Enhance Communication and Empower Patients
NCT02513277Not specifiedCOMPLETEDDiabetes Screening & Prevention for People With Learning (Intellectual) Disabilities:STOP Diabetes Study
NCT02561754Not specifiedCOMPLETEDWeight Management for Adolescents With IDD
NCT02591446Not specifiedCOMPLETEDTranscranial Magnetic Stimulation Studies in Autism Spectrum Disorders
NCT02714868Not specifiedCOMPLETEDEvaluation of Project TEAM (Teens Making Environmental and Activity Modifications)
NCT02721394Not specifiedUNKNOWNFCT With Young Children With ID in the UK: A Feasibility Project V.1
NCT02746614Not specifiedCOMPLETEDPsychomotor Therapy Effects in Adaptive Behavior and Motor Proficiency in Intellectual Disability
NCT02836405Not specifiedCOMPLETEDTMS for the Investigation of Brain Plasticity in Autism Spectrum Disorders