DYNC2H1
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Also known as hdhc11DHC2DHC1bDYH1B
Summary
DYNC2H1 (dynein cytoplasmic 2 heavy chain 1, HGNC:2962) is a protein-coding gene on chromosome 11q22.3, encoding Cytoplasmic dynein 2 heavy chain 1 (Q8NCM8). May function as a motor for intraflagellar retrograde transport.
This gene encodes a large cytoplasmic dynein protein that is involved in retrograde transport in the cilium and has a role in intraflagellar transport, a process required for ciliary/flagellar assembly. Mutations in this gene cause a heterogeneous spectrum of conditions related to altered primary cilium function and often involve polydactyly, abnormal skeletogenesis, and polycystic kidneys. Alternative splicing results in multiple transcript variants encoding distinct proteins.
Source: NCBI Gene 79659 — RefSeq curated summary.
At a glance
- Gene–disease (curated): asphyxiating thoracic dystrophy 3 (Definitive, ClinGen) — +3 more curated relationships
- GWAS associations: 11
- Clinical variants (ClinVar): 4,271 total — 266 pathogenic, 230 likely-pathogenic
- Phenotypes (HPO): 90
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity unscored
- MANE Select transcript:
NM_001377
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:2962 |
| Approved symbol | DYNC2H1 |
| Name | dynein cytoplasmic 2 heavy chain 1 |
| Location | 11q22.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | hdhc11, DHC2, DHC1b, DYH1B |
| Ensembl gene | ENSG00000187240 |
| Ensembl biotype | protein_coding |
| OMIM | 603297 |
| Entrez | 79659 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 6 protein_coding, 4 retained_intron, 2 nonsense_mediated_decay
ENST00000334267, ENST00000375735, ENST00000525306, ENST00000527252, ENST00000528670, ENST00000530547, ENST00000533027, ENST00000533197, ENST00000648198, ENST00000649323, ENST00000650373, ENST00000925566
RefSeq mRNA: 2 — MANE Select: NM_001377
NM_001080463, NM_001377
CCDS: CCDS44717, CCDS53701
Canonical transcript exons
ENST00000375735 — 89 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001105107 | 103158677 | 103158809 |
| ENSE00001105110 | 103163028 | 103163147 |
| ENSE00001105114 | 103170108 | 103170290 |
| ENSE00001105115 | 103154451 | 103154606 |
| ENSE00001105118 | 103155331 | 103155501 |
| ENSE00001105120 | 103156388 | 103156770 |
| ENSE00001105127 | 103158910 | 103159027 |
| ENSE00001105131 | 103165898 | 103166048 |
| ENSE00001105133 | 103160932 | 103161044 |
| ENSE00001105136 | 103170886 | 103171068 |
| ENSE00001105138 | 103168755 | 103168960 |
| ENSE00001105142 | 103154695 | 103154809 |
| ENSE00001332529 | 103109426 | 103109769 |
| ENSE00001468188 | 103321029 | 103321237 |
| ENSE00001468189 | 103316545 | 103316620 |
| ENSE00001468190 | 103311878 | 103312033 |
| ENSE00001468192 | 103307721 | 103307831 |
| ENSE00001468213 | 103243693 | 103243791 |
| ENSE00001468214 | 103236430 | 103236539 |
| ENSE00001468215 | 103235672 | 103235813 |
| ENSE00001468216 | 103234034 | 103234160 |
| ENSE00001468218 | 103231260 | 103231346 |
| ENSE00001468219 | 103222965 | 103223086 |
| ENSE00001468221 | 103222030 | 103222153 |
| ENSE00001468228 | 103479095 | 103479863 |
| ENSE00001531716 | 103153303 | 103153508 |
| ENSE00001531720 | 103152136 | 103152285 |
| ENSE00001531722 | 103148490 | 103148617 |
| ENSE00001531724 | 103147772 | 103147887 |
| ENSE00001531725 | 103143268 | 103143395 |
| ENSE00001531729 | 103135720 | 103135948 |
| ENSE00001531731 | 103135495 | 103135634 |
| ENSE00001546821 | 103187340 | 103187586 |
| ENSE00001549213 | 103186242 | 103186501 |
| ENSE00001550332 | 103174055 | 103174170 |
| ENSE00001552779 | 103176235 | 103176434 |
| ENSE00001553043 | 103188497 | 103188648 |
| ENSE00001554904 | 103181757 | 103181886 |
| ENSE00001556786 | 103191517 | 103191619 |
| ENSE00001559406 | 103177556 | 103177820 |
| ENSE00001560503 | 103179026 | 103179233 |
| ENSE00001561405 | 103184896 | 103185051 |
| ENSE00001562004 | 103173082 | 103173305 |
| ENSE00001563375 | 103189672 | 103189816 |
| ENSE00001592491 | 103203663 | 103203776 |
| ENSE00001597274 | 103121372 | 103121496 |
| ENSE00001603308 | 103122825 | 103123000 |
| ENSE00001605266 | 103125100 | 103125295 |
| ENSE00001618476 | 103219915 | 103220028 |
| ENSE00001623192 | 103128910 | 103129005 |
| ENSE00001629989 | 103120925 | 103121036 |
| ENSE00001645368 | 103197933 | 103198063 |
| ENSE00001662381 | 103113537 | 103113707 |
| ENSE00001667849 | 103133555 | 103133707 |
| ENSE00001679773 | 103199228 | 103199476 |
| ENSE00001702409 | 103220623 | 103220783 |
| ENSE00001716793 | 103200046 | 103200154 |
| ENSE00001719974 | 103204822 | 103204964 |
| ENSE00001732647 | 103134321 | 103134419 |
| ENSE00001764511 | 103192097 | 103192264 |
| ENSE00001770249 | 103120447 | 103120581 |
| ENSE00001771487 | 103117631 | 103117863 |
| ENSE00001778371 | 103120689 | 103120802 |
| ENSE00001779583 | 103115177 | 103115295 |
| ENSE00001793221 | 103116570 | 103116714 |
| ENSE00001796143 | 103215721 | 103215858 |
| ENSE00001804776 | 103114103 | 103114238 |
| ENSE00002430171 | 103287533 | 103287605 |
| ENSE00002450916 | 103303093 | 103303253 |
| ENSE00002451222 | 103282179 | 103282229 |
| ENSE00002462836 | 103255415 | 103255534 |
| ENSE00002470002 | 103304595 | 103304720 |
| ENSE00002485245 | 103259888 | 103259977 |
| ENSE00002498486 | 103280348 | 103280413 |
| ENSE00002500197 | 103245251 | 103245374 |
| ENSE00002514342 | 103257608 | 103257751 |
| ENSE00002518444 | 103253285 | 103253448 |
| ENSE00002527372 | 103256106 | 103256240 |
| ENSE00003491033 | 103399663 | 103399872 |
| ENSE00003506846 | 103358243 | 103358359 |
| ENSE00003531170 | 103323886 | 103323990 |
| ENSE00003544619 | 103211789 | 103211943 |
| ENSE00003546392 | 103455186 | 103455295 |
| ENSE00003560246 | 103468589 | 103468705 |
| ENSE00003569432 | 103209876 | 103209960 |
| ENSE00003595185 | 103286255 | 103286386 |
| ENSE00003619143 | 103283008 | 103283085 |
| ENSE00003666819 | 103435943 | 103436032 |
| ENSE00003682685 | 103456275 | 103456356 |
Expression profiles
Bgee: expression breadth ubiquitous, 230 present calls, max score 98.10.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.2432 / max 365.1518, expressed in 1491 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 116438 | 6.0516 | 1249 |
| 116435 | 5.4885 | 1302 |
| 116436 | 0.4980 | 300 |
| 116437 | 0.2051 | 68 |
Top tissues by expression
275 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 98.10 | gold quality |
| bronchial epithelial cell | CL:0002328 | 96.38 | gold quality |
| right uterine tube | UBERON:0001302 | 96.01 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 95.86 | gold quality |
| bronchus | UBERON:0002185 | 94.60 | gold quality |
| oocyte | CL:0000023 | 93.76 | gold quality |
| calcaneal tendon | UBERON:0003701 | 93.59 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 91.51 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 90.68 | gold quality |
| adenohypophysis | UBERON:0002196 | 89.79 | gold quality |
| tibia | UBERON:0000979 | 89.74 | gold quality |
| ventricular zone | UBERON:0003053 | 89.68 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 89.04 | gold quality |
| pituitary gland | UBERON:0000007 | 88.88 | gold quality |
| right testis | UBERON:0004534 | 87.47 | gold quality |
| left testis | UBERON:0004533 | 87.34 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 87.12 | gold quality |
| left ovary | UBERON:0002119 | 87.07 | gold quality |
| right ovary | UBERON:0002118 | 86.86 | gold quality |
| endocervix | UBERON:0000458 | 86.32 | gold quality |
| testis | UBERON:0000473 | 86.14 | gold quality |
| tibial nerve | UBERON:0001323 | 86.11 | gold quality |
| body of uterus | UBERON:0009853 | 86.01 | gold quality |
| stromal cell of endometrium | CL:0002255 | 85.43 | gold quality |
| mucosa of stomach | UBERON:0001199 | 84.79 | gold quality |
| adrenal tissue | UBERON:0018303 | 84.67 | gold quality |
| caudate nucleus | UBERON:0001873 | 84.56 | gold quality |
| caput epididymis | UBERON:0004358 | 84.47 | gold quality |
| ovary | UBERON:0000992 | 84.36 | gold quality |
| ectocervix | UBERON:0012249 | 83.90 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 11.07 |
| E-ENAD-27 | yes | 3.86 |
| E-GEOD-81383 | no | 920.25 |
| E-MTAB-7249 | no | 550.60 |
| E-MTAB-7381 | no | 302.36 |
| E-ENAD-20 | no | 94.31 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
63 targeting DYNC2H1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-9-3P | 99.96 | 70.88 | 2068 |
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
| HSA-MIR-374A-5P | 99.90 | 71.34 | 2923 |
| HSA-MIR-374B-5P | 99.90 | 69.98 | 2734 |
| HSA-MIR-3140-3P | 99.88 | 68.47 | 2069 |
| HSA-MIR-369-3P | 99.85 | 70.52 | 2264 |
| HSA-MIR-4495 | 99.82 | 72.08 | 3080 |
| HSA-MIR-944 | 99.82 | 70.85 | 3042 |
| HSA-MIR-204-5P | 99.79 | 71.62 | 2439 |
| HSA-MIR-211-5P | 99.79 | 71.65 | 2440 |
| HSA-MIR-320A-3P | 99.77 | 69.73 | 2107 |
| HSA-MIR-320B | 99.77 | 69.73 | 2107 |
| HSA-MIR-320C | 99.77 | 69.73 | 2107 |
| HSA-MIR-320D | 99.77 | 69.73 | 2107 |
| HSA-MIR-4429 | 99.77 | 69.62 | 2111 |
| HSA-MIR-3913-3P | 99.74 | 66.53 | 938 |
| HSA-MIR-4755-5P | 99.71 | 70.34 | 2716 |
| HSA-MIR-5006-3P | 99.71 | 70.26 | 2728 |
| HSA-MIR-466 | 99.67 | 70.85 | 2863 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity Not yet evaluated (unscored). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 23)
- Semi-quantitative RT-PCR experiments with 6 of those genes confirmed higher expression of DNCH2, ARHGEF6, NPM1 and SRI and lower expression of NRGN and TM4SF2 in GBM tumors. (PMID:16320026)
- short-rib polydactyly syndrome affected individuals were homozygous for an exon 12 missense mutation that predicted the amino acid substitution R587C (PMID:19361615)
- ATD and SRP type III are variants of a single disorder belonging to the ciliopathy group. (PMID:19442771)
- In an in vitro MT gliding assay, both dynein-1 and dynein-2 showed minus-end-directed motor activities. (PMID:21723285)
- This study confirms that NEK1 is one gene causing SRP type II but also reports mutations in DYNC2H1, expanding the phenotypic spectrum of DYNC2H1 mutations. (PMID:22499340)
- Exome sequencing identifies DYNC2H1 mutations as a common cause of asphyxiating thoracic dystrophy (Jeune syndrome) without major polydactyly, renal or retinal involvement. (PMID:23456818)
- Partial depletion of giantin or of WDR34 leads to an increase in cilia length consistent with the concept that giantin acts through dynein-2. (PMID:24046448)
- Compound heterozygous mutation in DYNC2H1 gene is associated with severe short-rib polydactyly syndrome type III. (PMID:25410398)
- a DYNC2H1 mutations causing SRPS III (PMID:25982780)
- Gene-based association analyses shows nominal significant association with multifocal fibromuscular dysplasia for cynein cytoplasmic heavy chain 1. (PMID:26147384)
- Compound heterozygous mutations in DYNC2H1 and ALOX15 were identified in miscarriages from two families with RPL. DYNC2H1 is involved in cilia biogenesis and has been associated with fetal lethality in humans. ALOX15 is expressed in placenta and its dysregulation has been associated with inflammation, placental, dysfunction, abnormal oxidative stress response and angiogenesis. (PMID:26826164)
- exome analysis allowed to identify mutations not previously reported in the DYNC2H1 (MIM 603297) and WDR60 (MIM 615462) genes, both codifying for ciliary intraflagellar transport components whose mutations are known to cause Jeune syndrome (PMID:26874042)
- next-generation panel sequencing identified novel mutations in the DYNC2H1 gene. The fetus was compound heterozygous for both a missense mutation c.8313A > T and a frameshift mutation c.10711_10714delTTTA in the DYNC2H1 gene, which were inherited from the mother and father, respectively (PMID:27323140)
- In all three cases, exome sequence analysis revealed compound heterozygosity for mutations in DYNC2H1, which encodes the main component of the retrograde IFT A motor, cytoplasmic dynein 2 heavy chain 1. Thus SRP type I, II, III and asphyxiating thoracic dystrophy (ATD), which also result from DYNC2H1 mutations. (PMID:27925158)
- This is the first report of prenatal diagnosis of DYNC2H1 mutations causing Short-rib polydactyly syndrome (SRPS) Type III in a fetus with increased BPD associated with polyhydramnios in China. (PMID:29359448)
- Pathogenic germline and somatic variants of DYNC2H1 associated with hypothalamic hamartoma were found. (PMID:31197031)
- we identified the nuclear transportation of DNA repair proteins by DHC2 as a critical regulator of acquired temozolomide resistance in MGMT-deficient glioblastoma (PMID:31347685)
- Molecular analyses using whole exome sequencing in one family revealed that the patient is compound heterozygote in DYNC2H1 gene for a frame-shift mutation c.4458delT resulting in premature stop-codon p.Phe1486Leufs*11 and a missense mutation c.9044A>G (p.Asp3015Gly) (PMID:31935347)
- DYNC2H1 hypomorphic or retina-predominant variants cause nonsyndromic retinal degeneration. (PMID:32753734)
- Clinical insights and molecular study of three foetuses with DYNC2H1 gene mutation causing short rib thoracic dystrophy. (PMID:33694158)
- DYNC2H1 variants cause Leber congenital amaurosis without syndromic features. (PMID:33755199)
- Radiological and histopathological features of short ribpolydactyly syndrome type III and identification of two novel DYNC2H1 variants. (PMID:33846808)
- Clinical variability in DYNC2H1-related skeletal ciliopathies includes Ellis-van Creveld syndrome. (PMID:36599940)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | DYNC2H1 | ENSDARG00000113761 |
| mus_musculus | Dync2h1 | ENSMUSG00000047193 |
| rattus_norvegicus | Dync2h1 | ENSRNOG00000032070 |
| drosophila_melanogaster | btv | FBGN0023096 |
| caenorhabditis_elegans | che-3 | WBGENE00000485 |
Paralogs (15): DNAH9 (ENSG00000007174), DNAH5 (ENSG00000039139), DNAH11 (ENSG00000105877), DNAH1 (ENSG00000114841), DNAH6 (ENSG00000115423), DNAH7 (ENSG00000118997), DNAH8 (ENSG00000124721), DNAH3 (ENSG00000158486), DNAH12 (ENSG00000174844), DNHD1 (ENSG00000179532), DNAH2 (ENSG00000183914), DNAH14 (ENSG00000185842), DNAH17 (ENSG00000187775), DYNC1H1 (ENSG00000197102), DNAH10 (ENSG00000197653)
Protein
Protein identifiers
Cytoplasmic dynein 2 heavy chain 1 — Q8NCM8 (reviewed: Q8NCM8)
Alternative names: Cytoplasmic dynein 2 heavy chain, Dynein cytoplasmic heavy chain 2, Dynein heavy chain 11, Dynein heavy chain isotype 1B
All UniProt accessions (5): A0A3B3ISP9, A0A3B3IT36, H0YDE0, H0YEX1, Q8NCM8
UniProt curated annotations — full annotation on UniProt →
Function. May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis. May play a role in transport between endoplasmic reticulum and Golgi or organization of the Golgi in cells.
Subunit / interactions. The cytoplasmic dynein complex 2 is probably composed by a heavy chain DYNC2H1 homodimer and a number of DYNC2LI1 light intermediate chains.
Subcellular location. Cytoplasm. Cytoskeleton. Cilium axoneme. Cell membrane.
Disease relevance. Short-rib thoracic dysplasia 3 with or without polydactyly (SRTD3) [MIM:613091] A form of short-rib thoracic dysplasia, a group of autosomal recessive ciliopathies that are characterized by a constricted thoracic cage, short ribs, shortened tubular bones, and a ’trident’ appearance of the acetabular roof. Polydactyly is variably present. Non-skeletal involvement can include cleft lip/palate as well as anomalies of major organs such as the brain, eye, heart, kidneys, liver, pancreas, intestines, and genitalia. Some forms of the disease are lethal in the neonatal period due to respiratory insufficiency secondary to a severely restricted thoracic cage, whereas others are compatible with life. Disease spectrum encompasses Ellis-van Creveld syndrome, asphyxiating thoracic dystrophy (Jeune syndrome), Mainzer-Saldino syndrome, and short rib-polydactyly syndrome. The disease is caused by variants affecting the gene represented in this entry. In some cases DYNC2H1 mutations result in disease phenotype in the presence of mutations in NEK1 indicating digenic inheritance (digenic short rib-polydactyly syndrome 3/6 with polydactyly).
Similarity. Belongs to the dynein heavy chain family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8NCM8-1 | 1 | yes |
| Q8NCM8-2 | 2 | |
| Q8NCM8-3 | 3 |
RefSeq proteins (2): NP_001073932, NP_001368* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003593 | AAA+_ATPase | Domain |
| IPR004273 | Dhc_D6_P-loop | Domain |
| IPR013594 | Dynein_heavy_tail | Domain |
| IPR013602 | Dhc_linker | Domain |
| IPR024317 | Dhc_D4 | Domain |
| IPR024743 | Dynein_HC_stalk | Domain |
| IPR026983 | DHC | Family |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR035699 | Dhc_AAA | Domain |
| IPR035706 | AAA_9 | Domain |
| IPR041228 | Dhc_C | Domain |
| IPR041658 | AAA_lid_11 | Domain |
| IPR042219 | AAA_lid_11_sf | Homologous_superfamily |
| IPR042222 | Dynein_2_N | Homologous_superfamily |
| IPR042228 | Dynein_linker_3 | Homologous_superfamily |
| IPR043157 | Dynein_AAA1S | Homologous_superfamily |
| IPR043160 | Dynein_C_barrel | Homologous_superfamily |
| IPR049400 | DYNC2H1_AAA_dom | Domain |
| IPR054354 | DYNC2H1-like_lid | Domain |
Pfam: PF03028, PF08385, PF08393, PF12774, PF12775, PF12777, PF12780, PF12781, PF18198, PF18199, PF21264, PF22597
UniProt features (306 total): helix 124, strand 76, sequence variant 48, turn 26, sequence conflict 12, region of interest 8, binding site 5, coiled-coil region 4, splice variant 2, chain 1
Structure
Experimental structures (PDB)
4 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4RH7 | X-RAY DIFFRACTION | 3.41 |
| 8RGH | ELECTRON MICROSCOPY | 3.9 |
| 8RGG | ELECTRON MICROSCOPY | 4 |
| 6RLB | ELECTRON MICROSCOPY | 4.5 |
Predicted structure (AlphaFold)
No AlphaFold model available for Q8NCM8 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (5): 145–152; 1689–1696; 1979–1986; 2291–2298; 2655–2662
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-5610787 | Hedgehog ‘off’ state |
| R-HSA-5620924 | Intraflagellar transport |
MSigDB gene sets: 407 (showing top):
GOBP_SPINAL_CORD_DEVELOPMENT, RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP, RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP, GOBP_CORONARY_VASCULATURE_DEVELOPMENT, GOBP_PROTEIN_LOCALIZATION_TO_CILIUM, chr11q22, MODULE_418, GOBP_NEUROGENESIS, ACEVEDO_LIVER_CANCER_WITH_H3K27ME3_UP, GOBP_CELL_DIFFERENTIATION_IN_SPINAL_CORD, GOBP_DORSAL_VENTRAL_PATTERN_FORMATION, GOBP_FOREBRAIN_DEVELOPMENT, GOBP_SPINAL_CORD_MOTOR_NEURON_DIFFERENTIATION, GOBP_SPECIFICATION_OF_SYMMETRY, GOBP_VENTRAL_SPINAL_CORD_DEVELOPMENT
GO Biological Process (20): kidney development (GO:0001822), Golgi organization (GO:0007030), determination of left/right symmetry (GO:0007368), dorsal/ventral pattern formation (GO:0009953), protein processing (GO:0016485), spinal cord motor neuron differentiation (GO:0021522), embryonic limb morphogenesis (GO:0030326), forebrain development (GO:0030900), intraciliary retrograde transport (GO:0035721), positive regulation of smoothened signaling pathway (GO:0045880), cilium assembly (GO:0060271), cilium movement involved in cell motility (GO:0060294), coronary vasculature development (GO:0060976), protein localization to cilium (GO:0061512), non-motile cilium assembly (GO:1905515), microtubule-based movement (GO:0007018), heart development (GO:0007507), central nervous system neuron differentiation (GO:0021953), cell projection organization (GO:0030030), neuron differentiation (GO:0030182)
GO Molecular Function (8): cytoskeletal motor activity (GO:0003774), ATP binding (GO:0005524), minus-end-directed microtubule motor activity (GO:0008569), dynein intermediate chain binding (GO:0045505), dynein light intermediate chain binding (GO:0051959), nucleotide binding (GO:0000166), protein binding (GO:0005515), ATP hydrolysis activity (GO:0016887)
GO Cellular Component (16): Golgi apparatus (GO:0005794), cytoplasmic dynein complex (GO:0005868), microtubule (GO:0005874), plasma membrane (GO:0005886), cilium (GO:0005929), axoneme (GO:0005930), apical part of cell (GO:0045177), extracellular exosome (GO:0070062), ciliary tip (GO:0097542), 9+2 motile cilium (GO:0097729), cytoplasm (GO:0005737), cytoskeleton (GO:0005856), membrane (GO:0016020), dynein complex (GO:0030286), motile cilium (GO:0031514), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Signaling by Hedgehog | 1 |
| Assembly of the 9+0 primary cilium | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| animal organ development | 2 |
| protein binding | 2 |
| cilium | 2 |
| renal system development | 1 |
| organelle organization | 1 |
| endomembrane system organization | 1 |
| determination of bilateral symmetry | 1 |
| left/right pattern formation | 1 |
| regionalization | 1 |
| proteolysis | 1 |
| protein maturation | 1 |
| cell differentiation in spinal cord | 1 |
| ventral spinal cord development | 1 |
| central nervous system neuron differentiation | 1 |
| limb morphogenesis | 1 |
| embryonic appendage morphogenesis | 1 |
| brain development | 1 |
| anatomical structure development | 1 |
| intraciliary transport | 1 |
| smoothened signaling pathway | 1 |
| regulation of smoothened signaling pathway | 1 |
| positive regulation of signal transduction | 1 |
| axoneme assembly | 1 |
| intraciliary transport involved in cilium assembly | 1 |
| cilium organization | 1 |
| protein localization to cilium | 1 |
| organelle assembly | 1 |
| trans-Golgi to periciliary membrane compartment transport | 1 |
| plasma membrane bounded cell projection assembly | 1 |
| ciliary transition zone assembly | 1 |
| cilium movement | 1 |
| cell motility | 1 |
| cilium-dependent cell motility | 1 |
| blood vessel development | 1 |
| heart development | 1 |
| protein localization to organelle | 1 |
| cilium assembly | 1 |
| microtubule-based process | 1 |
| circulatory system development | 1 |
Protein interactions and networks
STRING
1727 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DYNC2H1 | DYNC2LI1 | Q8TCX1 | 981 |
| DYNC2H1 | IFT80 | Q9P2H3 | 971 |
| DYNC2H1 | DYNC2I2 | Q96EX3 | 971 |
| DYNC2H1 | NEK1 | Q96PY6 | 969 |
| DYNC2H1 | DYNLL1 | P63167 | 937 |
| DYNC2H1 | DYNC2I1 | Q8WVS4 | 904 |
| DYNC2H1 | IFT172 | Q9UG01 | 877 |
| DYNC2H1 | DYNLT2B | Q8WW35 | 866 |
| DYNC2H1 | TTC21B | Q7Z4L5 | 791 |
| DYNC2H1 | EVC | P57679 | 790 |
| DYNC2H1 | IFT122 | Q9HBG6 | 753 |
| DYNC2H1 | WDR19 | Q8NEZ3 | 753 |
| DYNC2H1 | IFT140 | Q96RY7 | 750 |
| DYNC2H1 | WDR35 | Q9P2L0 | 722 |
| DYNC2H1 | IFT88 | Q13099 | 711 |
IntAct
57 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SPC24 | NDC80 | psi-mi:“MI:0914”(association) | 0.920 |
| GDI1 | RAB4A | psi-mi:“MI:0914”(association) | 0.820 |
| DYNLL1 | BLTP3B | psi-mi:“MI:0914”(association) | 0.730 |
| DYNLL2 | BLTP3B | psi-mi:“MI:0914”(association) | 0.640 |
| FCGRT | GOLIM4 | psi-mi:“MI:0914”(association) | 0.530 |
| EPHA1 | EXOC5 | psi-mi:“MI:0914”(association) | 0.530 |
| CENPH | PSMD11 | psi-mi:“MI:0914”(association) | 0.530 |
| SS18L2 | ARID1A | psi-mi:“MI:2364”(proximity) | 0.480 |
| DYNC2H1 | HNRNPA1L2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| DYNC2H1 | DYNC2H1 | psi-mi:“MI:0407”(direct interaction) | 0.360 |
| Nedd1 | psi-mi:“MI:0914”(association) | 0.350 | |
| Kif1c | ABLIM1 | psi-mi:“MI:0914”(association) | 0.350 |
| TIGD6 | ZRANB2 | psi-mi:“MI:0914”(association) | 0.350 |
| PPP2R3C | OFD1 | psi-mi:“MI:0914”(association) | 0.350 |
| Evpl | RAD9A | psi-mi:“MI:0914”(association) | 0.350 |
| Wdr5 | MGA | psi-mi:“MI:0914”(association) | 0.350 |
| Cobll1 | ABLIM1 | psi-mi:“MI:0914”(association) | 0.350 |
| Pxdc1 | CASK | psi-mi:“MI:0914”(association) | 0.350 |
| Tubg1 | ZC3H18 | psi-mi:“MI:0914”(association) | 0.350 |
| Vangl1 | psi-mi:“MI:0914”(association) | 0.350 | |
| Exosc1 | MPHOSPH6 | psi-mi:“MI:0914”(association) | 0.350 |
| JUN | TPM3 | psi-mi:“MI:0914”(association) | 0.350 |
| TANK | CNOT1 | psi-mi:“MI:0914”(association) | 0.350 |
| USP50 | IPO5 | psi-mi:“MI:0914”(association) | 0.350 |
| BTAF1 | psi-mi:“MI:0914”(association) | 0.350 | |
| DYNC2LI1 | DYNLT1 | psi-mi:“MI:0914”(association) | 0.350 |
| HIDE1 | TMEM120B | psi-mi:“MI:0914”(association) | 0.350 |
| GYPA | HYKK | psi-mi:“MI:0914”(association) | 0.350 |
| DUSP16 | MEIOC | psi-mi:“MI:0914”(association) | 0.350 |
| PRKY | METTL15 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (101): DYNC2H1 (Affinity Capture-MS), DYNC2H1 (Affinity Capture-MS), DYNC2H1 (Co-fractionation), DYNC2H1 (Co-fractionation), DYNC2H1 (Affinity Capture-MS), DYNC2H1 (Affinity Capture-MS), DYNC2H1 (Affinity Capture-MS), DYNC2H1 (Affinity Capture-MS), DYNC2H1 (Affinity Capture-MS), DYNC2H1 (Affinity Capture-MS), DYNC2H1 (Affinity Capture-MS), DYNC2H1 (Affinity Capture-MS), DYNC2H1 (Affinity Capture-MS), DYNC2H1 (Affinity Capture-MS), DYNC2H1 (Affinity Capture-MS)
ESM2 similar proteins: A4IF89, F4HQ84, F4JHH5, O00471, O43264, O54692, O54921, O54924, P97878, Q0WQF4, Q14746, Q1RMS6, Q29RB1, Q2QV94, Q3MHG0, Q3SZI7, Q3TPX4, Q45VK7, Q4V8C2, Q5R6J0, Q5R7R6, Q5RFM4, Q5U247, Q5ZJ43, Q5ZL91, Q68FP9, Q6NMI3, Q6NUQ1, Q6PGF7, Q8BZ36, Q8C0L8, Q8CI04, Q8IYI6, Q8L838, Q8NCM8, Q8R1U1, Q8R3I3, Q96JB2, Q96KP1, Q9BW27
Diamond homologs: Q19542, Q27802, Q45VK7, Q8NCM8, Q9JJ79, Q9SMH5, Q3V0Q1, P45443, P45444, P78716, Q923J6
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
4271 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 266 |
| Likely pathogenic | 230 |
| Uncertain significance | 1128 |
| Likely benign | 1921 |
| Benign | 322 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1031037 | NM_001377.3(DYNC2H1):c.5176C>T (p.Arg1726Ter) | Pathogenic |
| 1071685 | NM_001377.3(DYNC2H1):c.11915del (p.Pro3972fs) | Pathogenic |
| 1071871 | NM_001377.3(DYNC2H1):c.5808del (p.Glu1935_Tyr1936insTer) | Pathogenic |
| 1195154 | NM_001377.3(DYNC2H1):c.7140+1G>A | Pathogenic |
| 1252018 | NM_001377.3(DYNC2H1):c.3331G>A (p.Glu1111Lys) | Pathogenic |
| 1322793 | NM_001377.3(DYNC2H1):c.4093C>T (p.Gln1365Ter) | Pathogenic |
| 1332719 | NM_001377.3(DYNC2H1):c.12238C>T (p.Gln4080Ter) | Pathogenic |
| 1350595 | NM_001377.3(DYNC2H1):c.4724del (p.Thr1575fs) | Pathogenic |
| 1373072 | NM_001377.3(DYNC2H1):c.2140C>T (p.Gln714Ter) | Pathogenic |
| 1425264 | NM_001377.3(DYNC2H1):c.7380G>A (p.Trp2460Ter) | Pathogenic |
| 1429195 | NM_001377.3(DYNC2H1):c.3076C>T (p.Gln1026Ter) | Pathogenic |
| 1451461 | NM_001377.3(DYNC2H1):c.2008G>T (p.Glu670Ter) | Pathogenic |
| 1452722 | NM_001377.3(DYNC2H1):c.4328del (p.Gln1443fs) | Pathogenic |
| 1453557 | NM_001377.3(DYNC2H1):c.9823C>T (p.Arg3275Ter) | Pathogenic |
| 1456954 | NC_000011.9:g.(?103325894)(103349981_?)del | Pathogenic |
| 1496910 | NM_001377.3(DYNC2H1):c.12763C>T (p.Gln4255Ter) | Pathogenic |
| 167015 | NM_001377.3(DYNC2H1):c.8947-1G>T | Pathogenic |
| 1683449 | NM_001377.3(DYNC2H1):c.4429A>T (p.Lys1477Ter) | Pathogenic |
| 1698390 | NM_001377.3(DYNC2H1):c.3446G>A (p.Trp1149Ter) | Pathogenic |
| 1707477 | NM_001377.3(DYNC2H1):c.6464G>A (p.Trp2155Ter) | Pathogenic |
| 1722990 | NM_001377.3(DYNC2H1):c.7858C>T (p.Arg2620Ter) | Pathogenic |
| 1803487 | NM_001377.3(DYNC2H1):c.12462G>A (p.Trp4154Ter) | Pathogenic |
| 195733 | NM_001377.3(DYNC2H1):c.3353del (p.Ser1118fs) | Pathogenic |
| 196997 | NM_001377.3(DYNC2H1):c.5846del (p.Glu1949fs) | Pathogenic |
| 198946 | NM_001377.3(DYNC2H1):c.11681C>G (p.Ser3894Ter) | Pathogenic |
| 1998596 | NM_001377.3(DYNC2H1):c.6703del (p.Arg2235fs) | Pathogenic |
| 2062120 | NM_001377.3(DYNC2H1):c.7527T>A (p.Tyr2509Ter) | Pathogenic |
| 2069637 | NM_001377.3(DYNC2H1):c.5047del (p.Gly1684fs) | Pathogenic |
| 2423648 | NC_000011.9:g.(?103039464)(103041817_?)del | Pathogenic |
| 2428960 | NM_001377.3(DYNC2H1):c.2549T>A (p.Leu850Ter) | Pathogenic |
SpliceAI
13663 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:103109750:G:GT | donor_gain | 1.0000 |
| 11:103109768:CGGTA:C | donor_loss | 1.0000 |
| 11:103109769:GGTAC:G | donor_loss | 1.0000 |
| 11:103109770:G:GA | donor_loss | 1.0000 |
| 11:103109770:G:GG | donor_gain | 1.0000 |
| 11:103109771:T:G | donor_loss | 1.0000 |
| 11:103113703:TAAAG:T | donor_loss | 1.0000 |
| 11:103113706:AG:A | donor_loss | 1.0000 |
| 11:103113707:GG:G | donor_loss | 1.0000 |
| 11:103114223:G:GT | donor_gain | 1.0000 |
| 11:103115241:GATTA:G | donor_gain | 1.0000 |
| 11:103115242:A:G | donor_gain | 1.0000 |
| 11:103115246:G:GG | donor_gain | 1.0000 |
| 11:103115252:A:T | donor_gain | 1.0000 |
| 11:103115294:GA:G | donor_gain | 1.0000 |
| 11:103115296:G:GG | donor_gain | 1.0000 |
| 11:103116569:GGA:G | acceptor_gain | 1.0000 |
| 11:103117861:G:GT | donor_gain | 1.0000 |
| 11:103120684:T:G | acceptor_gain | 1.0000 |
| 11:103120687:A:AG | acceptor_gain | 1.0000 |
| 11:103120688:G:GG | acceptor_gain | 1.0000 |
| 11:103120923:A:AG | acceptor_gain | 1.0000 |
| 11:103120924:G:GG | acceptor_gain | 1.0000 |
| 11:103121370:A:AG | acceptor_gain | 1.0000 |
| 11:103121371:G:GG | acceptor_gain | 1.0000 |
| 11:103121494:AAG:A | donor_loss | 1.0000 |
| 11:103121495:AGGT:A | donor_loss | 1.0000 |
| 11:103121496:GGTAT:G | donor_loss | 1.0000 |
| 11:103121497:G:GC | donor_loss | 1.0000 |
| 11:103121498:T:G | donor_loss | 1.0000 |
AlphaMissense
28416 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:103170943:T:A | W1737R | 1.000 |
| 11:103170943:T:C | W1737R | 1.000 |
| 11:103177766:T:A | W2029R | 1.000 |
| 11:103177766:T:C | W2029R | 1.000 |
| 11:103179070:T:A | W2062R | 1.000 |
| 11:103179070:T:C | W2062R | 1.000 |
| 11:103179113:T:C | L2076P | 1.000 |
| 11:103114158:T:C | L141P | 0.999 |
| 11:103125288:T:C | L617P | 0.999 |
| 11:103133594:T:A | W665R | 0.999 |
| 11:103133594:T:C | W665R | 0.999 |
| 11:103133634:T:C | L678P | 0.999 |
| 11:103133676:T:C | L692P | 0.999 |
| 11:103134366:T:A | W718R | 0.999 |
| 11:103134366:T:C | W718R | 0.999 |
| 11:103135522:T:A | W745R | 0.999 |
| 11:103135522:T:C | W745R | 0.999 |
| 11:103135534:T:A | W749R | 0.999 |
| 11:103135534:T:C | W749R | 0.999 |
| 11:103135547:T:C | L753P | 0.999 |
| 11:103135559:T:C | L757P | 0.999 |
| 11:103154593:T:A | W1149R | 0.999 |
| 11:103154593:T:C | W1149R | 0.999 |
| 11:103156430:G:C | A1263P | 0.999 |
| 11:103156688:T:A | W1349R | 0.999 |
| 11:103156688:T:C | W1349R | 0.999 |
| 11:103158772:T:C | L1408P | 0.999 |
| 11:103158917:G:C | R1423P | 0.999 |
| 11:103158940:T:C | F1431L | 0.999 |
| 11:103158942:T:A | F1431L | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000001322 (11:103444237 T>G), RS1000008609 (11:103124115 C>T), RS1000018749 (11:103402860 G>A), RS1000021255 (11:103131174 C>T), RS1000043663 (11:103392189 C>G), RS1000064893 (11:103357684 G>A), RS1000068340 (11:103299183 T>C), RS1000074755 (11:103392107 A>G), RS1000081872 (11:103124499 A>C), RS1000087920 (11:103430379 C>T), RS1000091191 (11:103129485 C>T), RS1000094076 (11:103442571 C>G), RS1000096834 (11:103323498 A>T), RS1000124045 (11:103394203 A>G,T), RS1000129402 (11:103172138 T>C)
Disease associations
OMIM: gene MIM:603297 | disease phenotypes: MIM:208500, MIM:613091, MIM:269860, MIM:613819, MIM:268000, MIM:142623, MIM:611263, MIM:263520, MIM:616331, MIM:610193
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| asphyxiating thoracic dystrophy 3 | Definitive | Autosomal recessive |
| Jeune syndrome | Supportive | Autosomal recessive |
| short rib-polydactyly syndrome, Majewski type | Supportive | Autosomal recessive |
| short rib-polydactyly syndrome, Verma-Naumoff type | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| asphyxiating thoracic dystrophy 3 | Definitive | AR |
Mondo (23): Jeune syndrome (MONDO:0018770), asphyxiating thoracic dystrophy 3 (MONDO:0013127), inherited retinal dystrophy (MONDO:0019118), optic atrophy (MONDO:0003608), intellectual disability (MONDO:0001071), Beemer-Langer syndrome (MONDO:0010024), asphyxiating thoracic dystrophy 4 (MONDO:0013441), retinitis pigmentosa (MONDO:0019200), Hirschsprung disease, susceptibility to, 1 (MONDO:0007723), asphyxiating thoracic dystrophy 2 (MONDO:0012644), ciliopathy (MONDO:0005308), short-rib thoracic dysplasia 6 with or without polydactyly (MONDO:0009894), fetal growth restriction (MONDO:0005030), cystic kidney disease (MONDO:0002473), autosomal dominant Robinow syndrome 2 (MONDO:0014591)
Orphanet (16): Jeune syndrome (Orphanet:474), OBSOLETE: Inherited retinal disorder (Orphanet:71862), Short rib-polydactyly syndrome, Majewski type (Orphanet:93269), Short rib-polydactyly syndrome, Saldino-Noonan type (Orphanet:93270), Short rib-polydactyly syndrome, Verma-Naumoff type (Orphanet:93271), Short rib-polydactyly syndrome, Beemer-Langer type (Orphanet:93268), Retinitis pigmentosa (Orphanet:791), Hirschsprung disease (Orphanet:388), Ciliopathy (Orphanet:363250), Autosomal dominant Robinow syndrome (Orphanet:3107), Robinow syndrome (Orphanet:97360), Autosomal recessive polycystic kidney disease (Orphanet:731), (Orphanet:8378), Primary bone dysplasia (Orphanet:364526), Short rib-polydactyly syndrome (Orphanet:1505)
HPO phenotypes
90 total (30 of 90 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000028 | Cryptorchidism |
| HP:0000054 | Micropenis |
| HP:0000062 | Ambiguous genitalia |
| HP:0000083 | Renal insufficiency |
| HP:0000089 | Renal hypoplasia |
| HP:0000090 | Nephronophthisis |
| HP:0000105 | Enlarged kidney |
| HP:0000107 | Renal cyst |
| HP:0000110 | Renal dysplasia |
| HP:0000112 | Nephropathy |
| HP:0000113 | Polycystic kidney dysplasia |
| HP:0000126 | Hydronephrosis |
| HP:0000175 | Cleft palate |
| HP:0000204 | Cleft upper lip |
| HP:0000256 | Macrocephaly |
| HP:0000286 | Epicanthus |
| HP:0000343 | Long philtrum |
| HP:0000347 | Micrognathia |
| HP:0000445 | Wide nose |
| HP:0000518 | Cataract |
| HP:0000766 | Abnormal sternum morphology |
| HP:0000772 | Abnormal rib morphology |
| HP:0000773 | Short ribs |
| HP:0000774 | Narrow chest |
| HP:0000888 | Horizontal ribs |
| HP:0000889 | Abnormal clavicle morphology |
| HP:0000895 | Lateral clavicle hook |
| HP:0000944 | Abnormal metaphysis morphology |
| HP:0001156 | Brachydactyly |
GWAS associations
11 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000896_1 | Small-cell lung cancer (survival) | 9.000000e-08 |
| GCST002198_24 | Tuberculosis | 1.000000e-07 |
| GCST002671_10 | Toenail selenium levels | 2.000000e-06 |
| GCST002875_71 | Diisocyanate-induced asthma | 2.000000e-06 |
| GCST003919_1 | Spine bone mineral density and alcohol drinking | 2.000000e-08 |
| GCST006248_2 | Response to lurasidone in schizophrenia | 2.000000e-07 |
| GCST010479_21 | Coronary artery disease | 2.000000e-08 |
| GCST010480_9 | Coronary artery disease | 3.000000e-09 |
| GCST010866_85 | Coronary artery disease | 4.000000e-43 |
| GCST010867_2 | Coronary artery disease | 9.000000e-19 |
| GCST010988_426 | Adult body size | 3.000000e-08 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006995 | response to diisocyanate |
| EFO:0007701 | spine bone mineral density |
MeSH disease descriptors (13)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D005317 | Fetal Growth Retardation | C12.050.703.277.370; C16.300.390; C23.550.393.450 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D052177 | Kidney Diseases, Cystic | C12.050.351.968.419.403; C12.200.777.419.403; C12.950.419.403 |
| D009896 | Optic Atrophy | C10.292.700.225; C11.640.451 |
| D012164 | Retinal Diseases | C11.768 |
| D058499 | Retinal Dystrophies | C11.768.585.658 |
| D012174 | Retinitis Pigmentosa | C11.270.684; C11.768.585.658.500; C16.320.290.684 |
| D012779 | Short Rib-Polydactyly Syndrome | C05.116.099.708.857; C05.660.585.600.750; C16.131.077.850; C16.131.621.585.600.750 |
| C565707 | Arrhythmogenic Right Ventricular Dysplasia, Familial, 10 (supp.) | |
| C566982 | Asphyxiating Thoracic Dystrophy 2 (supp.) | |
| C537571 | Jeune syndrome (supp.) | |
| C537599 | Short rib-polydactyly syndrome, Beemer type (supp.) | |
| C537602 | Short rib-polydactyly syndrome, Verma-Naumoff type (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs716274 | Efficacy | 3 | etoposide;Platinum compounds |
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs716274 | DYNC2H1 | 3 | 0.00 | 1 | etoposide;Platinum compounds |
CTD chemical–gene interactions
48 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases expression, decreases methylation, increases expression | 3 |
| sodium arsenite | affects cotreatment, decreases expression, increases abundance, increases expression | 3 |
| Tobacco Smoke Pollution | decreases expression | 3 |
| Air Pollutants | decreases expression, increases abundance, increases expression | 2 |
| Arsenic | decreases expression, decreases methylation, increases abundance, affects cotreatment | 2 |
| Benzo(a)pyrene | decreases expression, increases methylation | 2 |
| Nickel | decreases expression | 2 |
| Valproic Acid | affects expression, decreases expression | 2 |
| Cadmium Chloride | increases abundance, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| sodium arsenate | increases expression | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| trichostatin A | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| manganese chloride | decreases expression, increases abundance, affects cotreatment | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| aflatoxin B2 | increases methylation | 1 |
| nickel sulfate | decreases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| abrine | decreases expression | 1 |
| quinocetone | increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
Cellosaurus cell lines
4 cell lines: 3 induced pluripotent stem cell, 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A6XP | LCHi002-A | Induced pluripotent stem cell | Male |
| CVCL_A6XQ | LCHi002-B | Induced pluripotent stem cell | Male |
| CVCL_E1ED | Ubigene U-87 MG DYNC2H1 KO | Cancer cell line | Male |
| CVCL_XC39 | SDQLCHi003-A | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
249 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT04224207 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa by Mesenchymal Stem Cells by Wharton’s Jelly Derived Mesenchymal Stem Cells |
| NCT07082855 | PHASE3 | NOT_YET_RECRUITING | A Multicenter, Randomized, Double-Blind, Controlled Clinical Study of Minocycline for the Treatment of Retinitis Pigmentosa |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT03763227 | PHASE2 | COMPLETED | Intravitreal Ranibizumab (Lucentis®) in the Treatment of Non-leaking Macular Cysts in Retinal Dystrophy |
| NCT04068207 | PHASE2 | COMPLETED | Minocycline Treatment in Retinitis Pigmentosa |
| NCT04945772 | PHASE2 | COMPLETED | Efficacy and Safety of MCO-010 Optogenetic Therapy in Adults With Retinitis Pigmentosa [RESTORE] |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT05902962 | PHASE1 | COMPLETED | SAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects |
| NCT06319872 | PHASE1 | RECRUITING | The Effects of Disulfiram (Antabuse®) on Visual Acuity in Patients With Retinal Degeneration |
| NCT06455826 | PHASE1 | COMPLETED | MAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects (Wallaby) |
| NCT01064505 | PHASE1 | COMPLETED | Safety Study of a Single IVT Injection of QPI-1007 in Chronic Optic Nerve Atrophy and Recent Onset NAION Patients |
| NCT05147701 | PHASE1 | RECRUITING | Safety of Cultured Allogeneic Adult Umbilical Cord Derived Mesenchymal Stem Cells for NAION |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT00948376 | Not specified | COMPLETED | Natural History of Asphyxiating Thoracic Dystrophy (DTJ) |
| NCT04143841 | Not specified | TERMINATED | Viveye Ocular Magnetic Neurostimulation System (OMNS) for the Management of Severe Dry Eye Disease |
| NCT04874909 | Not specified | COMPLETED | Classification, Functional Stratification and Biomarkers in Ciliopathy (CILLICORIRCM) |
| NCT04855045 | PHASE2/PHASE3 | UNKNOWN | An Open-label, Dose Escalation and Double-masked, Randomized, Controlled Trial Evaluating Safety and Tolerability of Sepofarsen in Children (<8 Years of Age) With LCA10 Caused by Mutations in the CEP290 Gene. |
| NCT03872479 | PHASE1/PHASE2 | UNKNOWN | Single Ascending Dose Study in Participants With LCA10 |
| NCT04123626 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | A Study to Evaluate the Safety and Tolerability of QR-1123 in Subjects With Autosomal Dominant Retinitis Pigmentosa Due to the P23H Mutation in the RHO Gene |
| NCT04545736 | PHASE1/PHASE2 | RECRUITING | Oral Metformin for Treatment of ABCA4 Retinopathy |
| NCT06212297 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Fellow-eye Study (FE) of LX101 in Subjects With Inherited Retinal Dystrophy |
| NCT06852963 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | A Repeat-Dose, Open-Label, Two Arm Safety and Efficacy Study of Two Doses of VP-001 Administered Intravitreally in Participants With Confirmed PRPF31 Mutation-Associated Retinal Dystrophy, Including Participants Previously Treated With VP001 |
| NCT07177196 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Personalized Antisense Oligonucleotide Therapy for a Single Participant With PRPH2 Mutation Associated With Retinal Dystrophy |
| NCT07063030 | EARLY_PHASE1 | RECRUITING | A Study of LX107 Gene Therapy in AIPL1-IRD Patients |
| NCT01546181 | Not specified | COMPLETED | Retinal Imaging by Adaptive Optics in Healthy Eyes and During Retinal and General Diseases |
| NCT01876147 | Not specified | COMPLETED | Visual and Functional Assessment in Low Vision Patients |
| NCT01920867 | Not specified | UNKNOWN | Stem Cell Ophthalmology Treatment Study |
| NCT02014389 | Not specified | RECRUITING | Evaluation of Objective Perimetry Using Chromatic Multifocal Pupillometer |
| NCT02983305 | Not specified | COMPLETED | Optical Head-Mounted Display Technology for Low Vision Rehabilitation |
Related Atlas pages
- Associated diseases: asphyxiating thoracic dystrophy 3, Jeune syndrome, short rib-polydactyly syndrome, Majewski type
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): arrhythmogenic right ventricular dysplasia 10, asphyxiating thoracic dystrophy 1, asphyxiating thoracic dystrophy 2, asphyxiating thoracic dystrophy 3, asphyxiating thoracic dystrophy 4, autosomal dominant Robinow syndrome 2, autosomal recessive polycystic kidney disease, Beemer-Langer syndrome, ciliopathy, cystic kidney disease, fetal growth restriction, Hirschsprung disease, susceptibility to, 1, Jeune syndrome, short rib-polydactyly syndrome, short rib-polydactyly syndrome, Majewski type, short-rib thoracic dysplasia 6 with or without polydactyly, skeletal dysplasia, small cell lung carcinoma, tuberculosis