DYNLT3
gene geneOn this page
Also known as TCTEX1L
Summary
DYNLT3 (dynein light chain Tctex-type 3, HGNC:11694) is a protein-coding gene on chromosome Xp11.4, encoding Dynein light chain Tctex-type 3 (P51808). Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function.
This gene encodes a member of a subclass of dynein light chains. The encoded protein homodimerizes and forms the light chain component of the cytoplasmic dynein motor protein complex. This protein may be important for binding dynein to specific cargos including the spindle checkpoint protein BUB3. This protein may also function independently of dynein as a transcriptional modulator. Pseudogenes of this gene are found on chromosomes 2 and 20.
Source: NCBI Gene 6990 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 40 total — 1 pathogenic
- MANE Select transcript:
NM_006520
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11694 |
| Approved symbol | DYNLT3 |
| Name | dynein light chain Tctex-type 3 |
| Location | Xp11.4 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | TCTEX1L |
| Ensembl gene | ENSG00000165169 |
| Ensembl biotype | protein_coding |
| OMIM | 300302 |
| Entrez | 6990 |
Gene structure
Transcript identifiers
Ensembl transcripts: 5 — 5 protein_coding
ENST00000378578, ENST00000378581, ENST00000432389, ENST00000859528, ENST00000859529
RefSeq mRNA: 1 — MANE Select: NM_006520
NM_006520
CCDS: CCDS14243
Canonical transcript exons
ENST00000378578 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001090921 | 37841028 | 37841105 |
| ENSE00001090923 | 37846317 | 37846358 |
| ENSE00001312293 | 37838836 | 37840651 |
| ENSE00001324086 | 37841782 | 37841905 |
| ENSE00001478005 | 37847481 | 37847571 |
Expression profiles
Bgee: expression breadth ubiquitous, 295 present calls, max score 99.14.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 28.4054 / max 588.4982, expressed in 1758 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 198885 | 17.2340 | 1731 |
| 198886 | 10.6730 | 1701 |
| 198887 | 0.3777 | 183 |
| 198888 | 0.1206 | 37 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| gingiva | UBERON:0001828 | 99.14 | gold quality |
| gingival epithelium | UBERON:0001949 | 99.14 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 99.10 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 99.05 | gold quality |
| pons | UBERON:0000988 | 98.97 | gold quality |
| squamous epithelium | UBERON:0006914 | 98.60 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 98.59 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 98.53 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 98.51 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 98.38 | gold quality |
| cranial nerve II | UBERON:0000941 | 98.32 | gold quality |
| oral cavity | UBERON:0000167 | 98.29 | gold quality |
| renal glomerulus | UBERON:0000074 | 98.27 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 98.22 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 98.20 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 98.13 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 97.91 | gold quality |
| nephron tubule | UBERON:0001231 | 97.88 | gold quality |
| postcentral gyrus | UBERON:0002581 | 97.86 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 97.85 | gold quality |
| cartilage tissue | UBERON:0002418 | 97.84 | gold quality |
| hair follicle | UBERON:0002073 | 97.78 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 97.64 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 97.59 | gold quality |
| parietal lobe | UBERON:0001872 | 97.59 | gold quality |
| kidney epithelium | UBERON:0004819 | 97.48 | gold quality |
| entorhinal cortex | UBERON:0002728 | 97.39 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 97.26 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 97.19 | gold quality |
| medulla oblongata | UBERON:0001896 | 97.09 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-10287 | yes | 37.68 |
| E-MTAB-6701 | yes | 18.39 |
| E-MTAB-9388 | yes | 10.22 |
| E-MTAB-6142 | no | 164.05 |
| E-HCAD-13 | no | 3.51 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
159 targeting DYNLT3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-568 | 99.98 | 69.86 | 2084 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
Literature-anchored findings (GeneRIF, showing 4)
- The N-terminal half of pUL35, in particular residues 30-43, was identified as a common region for the binding of DYNLT1 and DYNLT3. (PMID:20668116)
- These data show that both DYNLT1 and DYNLT3 interact with L2 of human papillomavirus 16 during virus infection. (PMID:21166973)
- Age-associated genes in human mammary gland drive human breast cancer progression. (PMID:32539762)
- The role of DYNLT3 in breast cancer proliferation, migration, and invasion via epithelial-to-mesenchymal transition. (PMID:37260179)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | dynlt3 | ENSDARG00000046132 |
| mus_musculus | Dynlt3 | ENSMUSG00000031176 |
| rattus_norvegicus | Dynlt3 | ENSRNOG00000003611 |
Paralogs (5): DYNLT1 (ENSG00000146425), DYNLT5 (ENSG00000152760), DYNLT2 (ENSG00000184786), DYNLT4 (ENSG00000188396), DYNLT2B (ENSG00000213123)
Protein
Protein identifiers
Dynein light chain Tctex-type 3 — P51808 (reviewed: P51808)
Alternative names: Protein 91/23, T-complex-associated testis-expressed 1-like
All UniProt accessions (3): A6NGJ0, P51808, F2Z328
UniProt curated annotations — full annotation on UniProt →
Function. Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Probably binds BUB3 as part of transport cargo. Required for the efficient progression through mitosis.
Subunit / interactions. Homodimer. The cytoplasmic dynein 1 complex consists of two catalytic heavy chains (HCs) and a number of non-catalytic subunits presented by intermediate chains (ICs), light intermediate chains (LICs) and light chains (LCs); the composition seems to vary in respect to the IC, LIC and LC composition. The heavy chain homodimer serves as a scaffold for the probable homodimeric assembly of the respective non-catalytic subunits. The ICs and LICs bind directly to the HC dimer and the LCs assemble on the IC dimer. DYNLT1 and DYNLT3 compete for association with dynein IC (DYNC1I1 or DYNC1I2). Self-associates. Interacts with DYNC1I1 and DYNC1I2. Interacts with BUB3. Interacts with SATB1 in nucleus to form complex with matrix attachment regions (MARs) of DNA.
Subcellular location. Nucleus. Cytoplasm. Cytoskeleton. Chromosome. Centromere. Kinetochore.
Similarity. Belongs to the dynein light chain Tctex-type family.
RefSeq proteins (1): NP_006511* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR005334 | Tctex-1-like | Family |
| IPR038586 | Tctex-1-like_sf | Homologous_superfamily |
Pfam: PF03645
UniProt features (2 total): chain 1, modified residue 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P51808-F1 | 90.46 | 0.84 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 4
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 286 (showing top):
GOBP_CHROMOSOME_ORGANIZATION, GOBP_REGULATION_OF_CELL_CYCLE_CHECKPOINT, BORCZUK_MALIGNANT_MESOTHELIOMA_UP, ZHAN_LATE_DIFFERENTIATION_GENES_UP, GOBP_REGULATION_OF_NUCLEAR_DIVISION, GOZGIT_ESR1_TARGETS_DN, GOBP_CELL_CYCLE_PHASE_TRANSITION, GOBP_POSITIVE_REGULATION_OF_MITOTIC_CELL_CYCLE, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GAUSSMANN_MLL_AF4_FUSION_TARGETS_A_UP, GOBP_CHROMOSOME_SEPARATION, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION, GOBP_POSITIVE_REGULATION_OF_INTRACELLULAR_TRANSPORT, WEI_MYCN_TARGETS_WITH_E_BOX, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1
GO Biological Process (4): microtubule-based movement (GO:0007018), regulation of mitotic cell cycle (GO:0007346), positive regulation of mitotic cell cycle (GO:0045931), cell division (GO:0051301)
GO Molecular Function (3): identical protein binding (GO:0042802), dynein intermediate chain binding (GO:0045505), protein binding (GO:0005515)
GO Cellular Component (10): kinetochore (GO:0000776), nucleus (GO:0005634), cytoplasm (GO:0005737), cytoplasmic dynein complex (GO:0005868), mitotic spindle astral microtubule (GO:0061673), chromosome, centromeric region (GO:0000775), chromosome (GO:0005694), cytoskeleton (GO:0005856), microtubule (GO:0005874), dynein complex (GO:0030286)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| intracellular membraneless organelle | 3 |
| mitotic cell cycle | 2 |
| protein binding | 2 |
| microtubule-based process | 1 |
| regulation of cell cycle | 1 |
| regulation of mitotic cell cycle | 1 |
| positive regulation of cell cycle | 1 |
| cellular process | 1 |
| binding | 1 |
| condensed chromosome, centromeric region | 1 |
| supramolecular complex | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
| dynein complex | 1 |
| astral microtubule | 1 |
| mitotic spindle | 1 |
| chromosomal region | 1 |
| microtubule cytoskeleton | 1 |
| polymeric cytoskeletal fiber | 1 |
| microtubule associated complex | 1 |
| catalytic complex | 1 |
Protein interactions and networks
STRING
1200 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| DYNLT3 | BUB3 | O43684 | 880 |
| DYNLT3 | DYNLL2 | Q96FJ2 | 825 |
| DYNLT3 | DYNLL1 | P63167 | 791 |
| DYNLT3 | DYNLRB2 | Q8TF09 | 786 |
| DYNLT3 | DYNLRB1 | Q9NP97 | 743 |
| DYNLT3 | DYNLT2B | Q8WW35 | 709 |
| DYNLT3 | DYNC1LI2 | O43237 | 683 |
| DYNLT3 | DYNC2LI1 | Q8TCX1 | 667 |
| DYNLT3 | DYNC2I2 | Q96EX3 | 636 |
| DYNLT3 | DYNC2I1 | Q8WVS4 | 635 |
| DYNLT3 | DYNC1H1 | Q14204 | 633 |
| DYNLT3 | DYNC1LI1 | Q9Y6G9 | 626 |
| DYNLT3 | DYNC1I1 | O14576 | 590 |
| DYNLT3 | DRC5 | Q5JU00 | 543 |
| DYNLT3 | DYNC1I2 | Q13409 | 518 |
IntAct
56 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| DYNC1I2 | DYNLT3 | psi-mi:“MI:0915”(physical association) | 0.750 |
| DYNLT3 | DYNLT3 | psi-mi:“MI:0915”(physical association) | 0.740 |
| DYNLT3 | DYNLT1 | psi-mi:“MI:0915”(physical association) | 0.730 |
| DYNLL1 | BLTP3B | psi-mi:“MI:0914”(association) | 0.730 |
| DYNC1I2 | DYNC1LI2 | psi-mi:“MI:0914”(association) | 0.680 |
| DYNLT1 | DYNC1LI2 | psi-mi:“MI:0914”(association) | 0.640 |
| DYNLT3 | NIF3L1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NIF3L1 | DYNLT3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DYNLT3 | DYNC1I2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DYNLT3 | PMS1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DYNLT3 | CCL28 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DYNLT3 | C2orf15 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DYNLT3 | ZC3H14 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DYNC1LI1 | DYNC1LI2 | psi-mi:“MI:0914”(association) | 0.530 |
| PAFAH1B1 | DYNLT3 | psi-mi:“MI:0914”(association) | 0.510 |
| DYNLT2B | TIPRL | psi-mi:“MI:0914”(association) | 0.510 |
| BMP2K | DYNLT3 | psi-mi:“MI:0915”(physical association) | 0.490 |
| BUB3 | DYNLT3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| HTRA1 | DYNLT3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| DYNLT3 | TESC | psi-mi:“MI:0915”(physical association) | 0.370 |
| Dynlrb1 | DYNC1LI2 | psi-mi:“MI:0914”(association) | 0.350 |
| DYNC1H1 | psi-mi:“MI:0914”(association) | 0.350 | |
| MAPRE1 | SCAMP1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (57): DYNLT3 (Two-hybrid), NIF3L1 (Two-hybrid), DYNLT3 (Affinity Capture-MS), DYNLT3 (Two-hybrid), TESC (Two-hybrid), DYNLT3 (Two-hybrid), DYNLT3 (Affinity Capture-MS), DYNLT3 (Affinity Capture-MS), PAFAH1B1 (Affinity Capture-MS), DYNLT3 (Affinity Capture-MS), TCTEX1D2 (Affinity Capture-MS), DYNLT3 (Affinity Capture-MS), DYNLT3 (Proximity Label-MS), DYNLT3 (Proximity Label-MS), DYNLT3 (Proximity Label-MS)
ESM2 similar proteins: A6SM77, A7F3L0, B4MYA1, F1QMY1, O02173, O04420, O61820, O74366, O95433, P11645, P32502, P34605, P34686, P36149, P38886, P51808, P56387, P87123, Q08CN0, Q13257, Q1HPS4, Q23400, Q28IG8, Q2F5R8, Q32P71, Q54EY2, Q54LT2, Q54PG1, Q5NVF5, Q5ZKP4, Q66IC8, Q6DG85, Q6XXL8, Q7QGK4, Q84WI4, Q86K94, Q8BK64, Q8H0S3, Q8N9S3, Q8SPS9
Diamond homologs: F1QMY1, P51807, P51808, P56387, P63171, P63172, Q54PG1, Q5NVF5, Q6XXL8, Q8SPS9, Q94524, Q9Z336, Q8WW35, Q9CQ66, A2VDD2, P11985, Q3B8D7
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 26 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Aggrephagy | 6 | 99.3× | 1e-10 |
| COPI-independent Golgi-to-ER retrograde traffic | 7 | 96.9× | 3e-12 |
| HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand | 6 | 77.4× | 5e-10 |
| Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal | 9 | 69.9× | 6e-14 |
| EML4 and NUDC in mitotic spindle formation | 9 | 55.7× | 2e-13 |
| Loss of Nlp from mitotic centrosomes | 5 | 52.9× | 1e-07 |
| Loss of proteins required for interphase microtubule organization from the centrosome | 5 | 52.9× | 1e-07 |
| Resolution of Sister Chromatid Cohesion | 9 | 51.9× | 3e-13 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| microtubule-based movement | 5 | 67.2× | 8e-07 |
| cell division | 5 | 10.5× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
40 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 10 |
| Likely benign | 0 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 2685701 | GRCh37/hg19 Xp22.11-11.3(chrX:24633854-44236178)x1 | Pathogenic |
SpliceAI
580 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| X:37840648:GTTCC:G | acceptor_loss | 1.0000 |
| X:37840650:TC:T | acceptor_gain | 1.0000 |
| X:37840651:CC:C | acceptor_gain | 1.0000 |
| X:37840652:C:CC | acceptor_gain | 1.0000 |
| X:37840652:C:G | acceptor_loss | 1.0000 |
| X:37841022:TCTTA:T | donor_loss | 1.0000 |
| X:37841023:CTTA:C | donor_loss | 1.0000 |
| X:37841024:TTAC:T | donor_loss | 1.0000 |
| X:37841025:TA:T | donor_loss | 1.0000 |
| X:37841026:A:AG | donor_loss | 1.0000 |
| X:37841027:C:A | donor_loss | 1.0000 |
| X:37841104:CA:C | acceptor_gain | 1.0000 |
| X:37841106:C:CC | acceptor_gain | 1.0000 |
| X:37841135:T:C | acceptor_gain | 1.0000 |
| X:37841776:ACTT:A | donor_loss | 1.0000 |
| X:37841778:TTA:T | donor_loss | 1.0000 |
| X:37841779:TAC:T | donor_loss | 1.0000 |
| X:37841780:A:AC | donor_gain | 1.0000 |
| X:37841780:AC:A | donor_gain | 1.0000 |
| X:37841781:C:CA | donor_gain | 1.0000 |
| X:37841781:CC:C | donor_gain | 1.0000 |
| X:37841781:CCA:C | donor_gain | 1.0000 |
| X:37841781:CCAA:C | donor_gain | 1.0000 |
| X:37841781:CCAAT:C | donor_gain | 1.0000 |
| X:37841901:ACACA:A | acceptor_gain | 1.0000 |
| X:37841902:CACA:C | acceptor_gain | 1.0000 |
| X:37841902:CACAC:C | acceptor_gain | 1.0000 |
| X:37841904:CA:C | acceptor_gain | 1.0000 |
| X:37841906:C:CC | acceptor_gain | 1.0000 |
| X:37846313:TCACC:T | donor_loss | 1.0000 |
AlphaMissense
774 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| X:37841046:A:G | W86R | 0.999 |
| X:37841046:A:T | W86R | 0.999 |
| X:37841789:T:A | K63N | 0.999 |
| X:37841789:T:G | K63N | 0.999 |
| X:37840596:A:C | F110L | 0.998 |
| X:37840596:A:T | F110L | 0.998 |
| X:37840598:A:G | F110L | 0.998 |
| X:37841031:C:G | D91H | 0.998 |
| X:37841044:C:A | W86C | 0.998 |
| X:37841044:C:G | W86C | 0.998 |
| X:37841814:A:G | L55P | 0.998 |
| X:37840600:A:T | V109D | 0.997 |
| X:37840611:A:C | C105W | 0.997 |
| X:37841030:T:A | D91V | 0.997 |
| X:37841060:G:T | A81D | 0.997 |
| X:37841098:A:C | C68W | 0.997 |
| X:37841100:A:G | C68R | 0.997 |
| X:37841790:T:A | K63I | 0.997 |
| X:37841791:T:C | K63E | 0.997 |
| X:37841838:A:T | I47K | 0.997 |
| X:37840594:G:T | A111D | 0.996 |
| X:37840606:A:T | V107D | 0.996 |
| X:37841029:A:C | D91E | 0.996 |
| X:37841029:A:T | D91E | 0.996 |
| X:37841045:C:G | W86S | 0.996 |
| X:37841061:C:G | A81P | 0.996 |
| X:37846324:A:T | V22D | 0.996 |
| X:37841030:T:G | D91A | 0.995 |
| X:37841031:C:A | D91Y | 0.995 |
| X:37841099:C:T | C68Y | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000210049 (X:37842677 C>A,T), RS1000220055 (X:37845070 T>A,C), RS1000655595 (X:37845433 T>G), RS1002294228 (X:37847223 C>G,T), RS1002528651 (X:37845625 T>C), RS1002674938 (X:37842336 C>A,T), RS1002705960 (X:37842792 A>G), RS1002768931 (X:37845292 C>T), RS1003530498 (X:37847566 C>T), RS1003563687 (X:37849515 T>C), RS1003682089 (X:37840437 A>C), RS1003773040 (X:37847278 C>A), RS1004002896 (X:37838363 G>A), RS1004213960 (X:37846688 C>T), RS1004243644 (X:37848965 A>G)
Disease associations
OMIM: gene MIM:300302 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
39 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | increases expression, decreases expression | 2 |
| Resveratrol | decreases expression, affects cotreatment, increases expression | 2 |
| Estradiol | increases expression, increases reaction | 2 |
| Phenylmercuric Acetate | increases expression, affects cotreatment | 2 |
| dicrotophos | decreases expression | 1 |
| alpha phellandrene | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| kojic acid | decreases expression | 1 |
| trichostatin A | affects expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| 4-hydroxy-2-nonenal | affects binding | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| bisphenol S | affects cotreatment, increases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Antimycin A | decreases expression | 1 |
| Benzo(a)pyrene | affects methylation, decreases methylation, increases methylation | 1 |
| Carbamazepine | affects expression | 1 |
| Cisplatin | increases expression | 1 |
| Coumestrol | affects cotreatment, increases expression | 1 |
| Dexamethasone | affects cotreatment, increases expression | 1 |
| Diethylhexyl Phthalate | increases expression | 1 |
| Indomethacin | affects cotreatment, increases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Lipopolysaccharides | affects cotreatment, decreases expression | 1 |
| Quercetin | increases expression | 1 |
| Rotenone | increases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1QI | Abcam HeLa DYNLT3 KO | Cancer cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.