E2F1
gene geneOn this page
Also known as RBP3
Summary
E2F1 (E2F transcription factor 1, HGNC:3113) is a protein-coding gene on chromosome 20q11.22, encoding Transcription factor E2F1 (Q01094). Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5’-TTTC[CG]CGC-3’ found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. It is a selective cancer dependency (DepMap: 15.8% of cell lines).
The protein encoded by this gene is a member of the E2F family of transcription factors. The E2F family plays a crucial role in the control of cell cycle and action of tumor suppressor proteins and is also a target of the transforming proteins of small DNA tumor viruses. The E2F proteins contain several evolutionally conserved domains found in most members of the family. These domains include a DNA binding domain, a dimerization domain which determines interaction with the differentiation regulated transcription factor proteins (DP), a transactivation domain enriched in acidic amino acids, and a tumor suppressor protein association domain which is embedded within the transactivation domain. This protein and another 2 members, E2F2 and E2F3, have an additional cyclin binding domain. This protein binds preferentially to retinoblastoma protein pRB in a cell-cycle dependent manner. It can mediate both cell proliferation and p53-dependent/independent apoptosis.
Source: NCBI Gene 1869 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 57 total
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 15.8% of screened cell lines
- Transcription factor: yes — 493 downstream targets (CollecTRI)
- MANE Select transcript:
NM_005225
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3113 |
| Approved symbol | E2F1 |
| Name | E2F transcription factor 1 |
| Location | 20q11.22 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | RBP3 |
| Ensembl gene | ENSG00000101412 |
| Ensembl biotype | protein_coding |
| OMIM | 189971 |
| Entrez | 1869 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 4 protein_coding
ENST00000343380, ENST00000888354, ENST00000932103, ENST00000932104
RefSeq mRNA: 1 — MANE Select: NM_005225
NM_005225
CCDS: CCDS13224
Canonical transcript exons
ENST00000343380 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000661342 | 33677105 | 33677330 |
| ENSE00000661345 | 33679755 | 33679974 |
| ENSE00000661346 | 33680326 | 33680416 |
| ENSE00000860058 | 33677426 | 33677540 |
| ENSE00001386402 | 33675477 | 33676979 |
| ENSE00001387594 | 33678201 | 33678353 |
| ENSE00001667355 | 33686004 | 33686385 |
Expression profiles
Bgee: expression breadth ubiquitous, 193 present calls, max score 89.40.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.6683 / max 413.5667, expressed in 1440 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 186970 | 12.6683 | 1440 |
Top tissues by expression
267 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| ganglionic eminence | UBERON:0004023 | 89.40 | gold quality |
| secondary oocyte | CL:0000655 | 89.18 | gold quality |
| ventricular zone | UBERON:0003053 | 88.37 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.60 | gold quality |
| oocyte | CL:0000023 | 85.01 | gold quality |
| embryo | UBERON:0000922 | 83.65 | gold quality |
| endometrium epithelium | UBERON:0004811 | 83.59 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 80.76 | gold quality |
| stromal cell of endometrium | CL:0002255 | 79.72 | gold quality |
| olfactory bulb | UBERON:0002264 | 78.62 | gold quality |
| type B pancreatic cell | CL:0000169 | 78.39 | gold quality |
| prefrontal cortex | UBERON:0000451 | 78.08 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 77.87 | gold quality |
| bone marrow | UBERON:0002371 | 77.69 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 77.64 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 77.18 | gold quality |
| putamen | UBERON:0001874 | 75.47 | gold quality |
| male germ cell | CL:0000015 | 75.28 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 75.23 | gold quality |
| vena cava | UBERON:0004087 | 75.17 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 75.06 | gold quality |
| triceps brachii | UBERON:0001509 | 74.98 | gold quality |
| lymph node | UBERON:0000029 | 74.95 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 74.82 | gold quality |
| sperm | CL:0000019 | 74.78 | gold quality |
| frontal cortex | UBERON:0001870 | 74.54 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 74.53 | gold quality |
| gluteal muscle | UBERON:0002000 | 74.52 | gold quality |
| right adrenal gland | UBERON:0001233 | 74.45 | gold quality |
| right testis | UBERON:0004534 | 74.42 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-10662 | yes | 109.44 |
| E-ANND-3 | no | 2.68 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
493 targets.
| Target | Regulation |
|---|---|
| ABCA1 | Unknown |
| ABCB1 | Activation |
| ABCG2 | Unknown |
| ACAN | Repression |
| ACSL1 | Unknown |
| ACTR2 | Unknown |
| ADAM2 | |
| ADH6 | Unknown |
| AK3 | Unknown |
| ALG5 | |
| ALOX5AP | Unknown |
| AMPD3 | Unknown |
| ANGPT2 | Activation |
| ANKRD16 | Unknown |
| APAF1 | Activation |
| AR | Activation |
| ARHGEF17 | Unknown |
| ARL10 | Unknown |
| ARMC8 | Unknown |
| ASCC2 | Unknown |
| ASF1B | Activation |
| ATAD2 | Unknown |
| ATG10 | Activation |
| ATG12 | Activation |
| ATG4A | Activation |
| ATG4B | Activation |
| ATG4D | Activation |
| ATG5 | Activation |
| ATG7 | Activation |
| ATG9A | Activation |
JASPAR motifs
| Motif | Name | Family |
|---|---|---|
| MA0024.1 | E2F1 | E2F |
| MA0024.2 | E2F1 | E2F |
| MA0024.3 | E2F1 | E2F |
JASPAR matrix evidence (PMIDs): PMID:1411535, PMID:17908821, PMID:9372931
Upstream regulators (CollecTRI, top): ARID3A, ATM, CTNNB1, E2F1, E2F2, E2F3, E2F4, E2F5, E2F6, E2F7, E2F8, ELL, ERCC2, ESR1, FOS, FOXC1, FOXJ3, GLI2, HCFC1, HDAC1, HES1, HES6, HIC1, IRF1, KLF15, KMT2E, LEF1, MECOM, MYBL2, MYC, MYOD1, NANOG, NFKB1, NFKB, NFYA, NKX2-5, NKX6-1, NR0B2, NR2F2, NR4A1
miRNA regulators (miRDB)
66 targeting E2F1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-6748-5P | 100.00 | 65.81 | 1057 |
| HSA-MIR-9-3P | 99.96 | 70.88 | 2068 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-329-3P | 99.91 | 66.56 | 1234 |
| HSA-MIR-362-3P | 99.91 | 66.38 | 1267 |
| HSA-MIR-106A-5P | 99.90 | 73.94 | 2683 |
| HSA-MIR-17-5P | 99.89 | 73.83 | 2665 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-106B-5P | 99.88 | 74.72 | 2795 |
| HSA-MIR-20A-5P | 99.88 | 74.76 | 2769 |
| HSA-MIR-20B-5P | 99.88 | 74.01 | 2621 |
| HSA-MIR-519D-3P | 99.88 | 73.97 | 2607 |
| HSA-MIR-93-5P | 99.88 | 73.98 | 2606 |
| HSA-MIR-526B-3P | 99.88 | 74.06 | 2587 |
| HSA-MIR-3140-3P | 99.88 | 68.47 | 2069 |
| HSA-MIR-4779 | 99.86 | 66.50 | 1583 |
| HSA-MIR-3941 | 99.86 | 70.54 | 2735 |
| HSA-MIR-205-5P | 99.81 | 70.05 | 1557 |
| HSA-MIR-320A-3P | 99.77 | 69.73 | 2107 |
| HSA-MIR-320B | 99.77 | 69.73 | 2107 |
| HSA-MIR-320C | 99.77 | 69.73 | 2107 |
| HSA-MIR-320D | 99.77 | 69.73 | 2107 |
| HSA-MIR-4429 | 99.77 | 69.62 | 2111 |
| HSA-MIR-378G | 99.71 | 64.90 | 1106 |
| HSA-MIR-519A-3P | 99.67 | 71.67 | 1868 |
| HSA-MIR-519B-3P | 99.67 | 71.67 | 1868 |
| HSA-MIR-519C-3P | 99.67 | 71.67 | 1870 |
| HSA-MIR-6887-3P | 99.66 | 67.83 | 1778 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 15.8% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- transcriptional inhibition of the plasminogen activator inhibitor type 1 gene (PMID:11559366)
- expression reduced in primary and metastatic breast carcinoma (PMID:11759817)
- selection and characterization of active hammerhead ribozymes targeted against E2F1 full-length mRNA (PMID:11763345)
- Regulation of E2F1-dependent gene transcription and apoptosis by the ETS-related transcription factor GABPgamma1 (PMID:11884602)
- increased ppRb and E2FI immunoreactivity in Alzheimer disease brain, with ppRb predominately located in the nucleus and E2F1 in the cytoplasm. (PMID:11939591)
- Human telomerase accelerates growth of lens epithelial cells through regulation of the genes mediating RB/E2F pathway. (PMID:12032846)
- Overexpression of E2F-1 induces apoptosis and increases chemosensitivity in human pancreatic carcinoma cells. Cell cycle, PARP cleavage and morphology supported apoptosis as the cell death mechanism in reponse to E2F1. (PMID:12065845)
- conclude that E2F proteins and Sp1 play an important role in the control of p18 expression (PMID:12077144)
- p14(ARF) regulates E2F activity in different cell types and down-regulates E2F-dependent transcription, and in cells undergoing E2F-dependent apoptosis prompts cell cycle arrest. p14(ARF) possesses multiple binding domains for E2F-1. (PMID:12082609)
- p73beta is transcriptionally induced by E2F-1 and functions as a positive regulator of apoptosis. (PMID:12095638)
- Most of the TGF-beta1-induced preapoptotic cells were arrested in G(1) phase of the cell cycle. This was associated with a significant increase in both E2F-DNA-binding activity and transcription of E2F-responsive reporter constructs. (PMID:12118073)
- E2F-1 regulates the expression of APAF-1 in human cells (PMID:12149244)
- E2F-1 has a role in regulation of caspase proenzymes through a direct transcriptional mechanism (PMID:12389032)
- Che-1 contacts the pocket region of Rb and removes HDAC1 from the Rb/E2F1 complex, affecting the activation of E2F-dependent promoters and cell division. (PMID:12450794)
- During thyroid hormone-induced differentiation of embryonic carcinoma cells and of oligodendrocyte precursor cells, levels of E2F-1 mRNA and E2F-1 protein decrease, caused by thyroid hormone receptor regulating the transcription of the E2F-1 gene. (PMID:12511608)
- IFN-gamma is an effective inhibitor of ASM cell proliferation by blocking transition from G1-to-S phase by acting at two different levels: modulation of cdk2/cyclin E activation and inhibition of E2F-1 gene expression. (PMID:12588705)
- expression of the transcription factor DP-1 and its heterodimeric partner E2F-1 in non-Hodgkin lymphoma (PMID:12607600)
- We found that E2F1 was present at most of the CpG islands bound by pRb, independent of the phase of the cell cycle, our data suggest that the majority of DNA-bound pRb is recruited to E2F target promoters during both G(0)/G(1) and S phases. (PMID:12629508)
- P202 inhibits E2F1-mediated apoptosis in prostate cancer cells (PMID:12646190)
- E2F1 is involved in heat shock-induced cell cycle arrests at the G1/S and G2/M checkpoints, which also may be relevant for hyperthermic cancer therapy (PMID:12674510)
- esf-1 induces apoptosis and inhibits proliferation of human colon cancer cell lines; a caspase-independent pathway is suggested (PMID:12679318)
- Chk2 phosphorylates and activates E2F-1 in response to DNA damage, resulting in apoptosis. This suggests a role for E2F-1 in checkpoint control and tumour suppression. (PMID:12717439)
- In response to DNA damage, E2F1 is directed from cell cycle progression to apoptotic E2F target genes. (PMID:12766778)
- Analysis of gene expression level profiles showed that parental cell line undergoes apoptosis through an E2F1/p73-dependent pathway while its drug resistant variant evades it. (PMID:12789260)
- Both senescence-associated heterochromatin foci formation and the silencing of E2F target genes depend on the integrity of the Rb pathway and do not occur in reversibly arrested cells (PMID:12809602)
- C/EBPepsilon interacts with Rb and E2F1 during granulocytic differentiation (PMID:12947005)
- E2F1 is upregulated by TR3 orphan nuclear receptor in human prostate cancer cells (PMID:12947120)
- the Cyclin D1/E2F1 pathway may be involved in apoptotic death of bone marrow cells in myelodysplastic syndromes (PMID:12965081)
- E2F1 activity is repressed by BRG1, but this repression is blocked when BRG1 interacts with EVI1 (PMID:14555651)
- two E2F-binding sites play distinct roles in the regulation of E2F1 transcription by interacting with different sets of E2F members and cooperating with the contiguous repressor element (PMID:14576826)
- Here we show that the E2F1 binding domain of prohibitin has the potential to fold into a coiled-coil structure. (PMID:14637159)
- E2F and Sp1/Sp3 synergize but are not sufficient to activate the MYCN gene in neuroblastoma (PMID:14645238)
- results establish that tumor necrosis factor alpha targets insulin-like growth factor-I induced E2F-transcription facor 1 synthesis, leading to inhibition of accumulation in cyclin A and hyperphosphorylation of RB protein (PMID:14681231)
- E2F1 transactivation is repressed by MdmX (PMID:14739777)
- Our results suggest that overexpression of E2F1, induced both by LOH at the RB locus and anomalous phosphorylation of the RB protein, is involved in the development of non-small cell lung carcinoma. (PMID:14997382)
- Results suggest that E2F1 plays a central role in signaling disturbances in the retinoblastoma growth control pathway and, by upregulation of Chk2 by Atm and Nbs1, may sensitize cells to undergo apoptosis. (PMID:15024084)
- The data suggest that E2F-1 overexpression plays a role in suppression of tumor, at least in part trough transcriptional regulation of FHIT and relevant activation of WWOX. (PMID:15044096)
- ErbB3-binding protein Ebp1 binding to E2F promoter elements and E2F-mediated transcription are regulated by heregulin (PMID:15073182)
- increased expression of the E2F1 gene might play a significant role in human thyroid carcinogenesis through derangement of the Rb-E2F signaling pathway (PMID:15118916)
- E2F1-dependent recruitment of Tip60 to chromatin occurred in late G(1) (PMID:15121871)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | e2f1 | ENSDARG00000103868 |
| mus_musculus | E2f1 | ENSMUSG00000027490 |
| rattus_norvegicus | E2f1 | ENSRNOG00000072439 |
| caenorhabditis_elegans | WBGENE00009899 |
Paralogs (7): E2F2 (ENSG00000007968), E2F3 (ENSG00000112242), E2F8 (ENSG00000129173), E2F5 (ENSG00000133740), E2F7 (ENSG00000165891), E2F6 (ENSG00000169016), E2F4 (ENSG00000205250)
Protein
Protein identifiers
Transcription factor E2F1 — Q01094 (reviewed: Q01094)
Alternative names: PBR3, Retinoblastoma-associated protein 1, Retinoblastoma-binding protein 3, pRB-binding protein E2F-1
All UniProt accessions (1): Q01094
UniProt curated annotations — full annotation on UniProt →
Function. Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5’-TTTC[CG]CGC-3’ found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DRTF1/E2F complex functions in the control of cell-cycle progression from G1 to S phase. E2F1 binds preferentially RB1 in a cell-cycle dependent manner. It can mediate both cell proliferation and TP53/p53-dependent apoptosis. Blocks adipocyte differentiation by binding to specific promoters repressing CEBPA binding to its target gene promoters. Directly activates transcription of PEG10. Positively regulates transcription of RRP1B.
Subunit / interactions. Component of the DRTF1/E2F transcription factor complex. Forms heterodimers with DP family members. The E2F1 complex binds specifically hypophosphorylated RB1, the interaction represses E2F1-driven transcription. During the cell cycle, RB1 becomes phosphorylated in mid-to-late G1 phase, detaches from the DRTF1/E2F complex, rendering E2F transcriptionally active. Viral oncoproteins, notably E1A, T-antigen and HPV E7, are capable of sequestering RB1, thus releasing the active complex. Interacts with TRRAP, which probably mediates its interaction with histone acetyltransferase complexes, leading to transcription activation. Binds TOPBP1 and EAPP. Interacts with ARID3A. Interacts with TRIM28; the interaction inhibits E2F1 acetylation through recruiting HDAC1 and represses its transcriptional activity. Interaction with KAT2B; the interaction acetylates E2F1 enhancing its DNA-binding and transcriptional activity. Interacts with BIRC2/c-IAP1 (via BIR domains). The complex TFDP1:E2F1 interacts with CEBPA; the interaction prevents CEBPA binding to target genes promoters and represses its transcriptional activity. Interacts with RRP1B. Interacts with HCFC1. Interacts with KMT2E; the interaction is probably indirect and is mediated via HCFC1. Interacts with DCAF5 and L3MBTL3; the interaction requires methylation at Lys-185 and is necessary to target E2F1 for ubiquitination by the CRL4-DCAF5 E3 ubiquitin ligase complex. (Microbial infection) Interacts with human cytomegalovirus/HHV-5 protein UL123.
Subcellular location. Nucleus.
Post-translational modifications. Phosphorylated by CDK2 and cyclin A-CDK2 in the S-phase. Phosphorylation at Ser-364 by CHEK2 stabilizes E2F1 upon DNA damage and regulates its effect on transcription and apoptosis. Phosphorylation at Ser-403 by GSK3B promotes interaction with USP11, leading to its deubiquitination and stabilization. Ubiquitinated via ‘Lys-63’-linked ubiquitin, leading to its degradation. Deubiquitinated by USP11 following phosphorylation by GSK3B, promoting its stability. Acetylation stimulates DNA-binding. Enhanced under stress conditions such as DNA damage and inhibited by retinoblastoma protein RB1. Regulated by KAP1/TRIM28 which recruits HDAC1 to E2F1 resulting in deacetylation. Acetylated by P/CAF/KAT2B. Methylation at Lys-185 by SETD7 promotes E2F1 ubiquitin-dependent proteasomal degradation.
Activity regulation. BIRC2/c-IAP1 stimulates its transcriptional activity.
Similarity. Belongs to the E2F/DP family.
RefSeq proteins (1): NP_005216* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003316 | E2F_WHTH_DNA-bd_dom | Domain |
| IPR015633 | E2F | Family |
| IPR032198 | E2F_CC-MB | Domain |
| IPR036388 | WH-like_DNA-bd_sf | Homologous_superfamily |
| IPR036390 | WH_DNA-bd_sf | Homologous_superfamily |
| IPR037241 | E2F-DP_heterodim | Homologous_superfamily |
Pfam: PF02319, PF16421
UniProt features (51 total): region of interest 10, mutagenesis site 9, modified residue 8, strand 6, sequence variant 5, sequence conflict 4, helix 4, chain 1, DNA-binding region 1, short sequence motif 1, compositionally biased region 1, turn 1
Structure
Experimental structures (PDB)
8 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6G0P | X-RAY DIFFRACTION | 1.3 |
| 5M9O | X-RAY DIFFRACTION | 1.45 |
| 6ULS | X-RAY DIFFRACTION | 1.5 |
| 5M9N | X-RAY DIFFRACTION | 1.95 |
| 1H24 | X-RAY DIFFRACTION | 2.5 |
| 2AZE | X-RAY DIFFRACTION | 2.55 |
| 1O9K | X-RAY DIFFRACTION | 2.6 |
| 9CB3 | ELECTRON MICROSCOPY | 3.47 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q01094-F1 | 63.40 | 0.24 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (8): 117, 120, 125, 185, 364, 375, 403, 433
Mutagenesis-validated functional residues (9):
| Position | Phenotype |
|---|---|
| 117 | abolishes acetylation; when associated with r-120 and r-125. |
| 120 | abolishes acetylation; when associated with r-117 and r-125. |
| 125 | abolishes acetylation; when associated with r-117 and r-120. |
| 132 | abolishes interaction with and repression of cebpa and inhibition of adipogenesis. |
| 185 | abrogates methylation by setd7. loss of interaction with l3mbtl3. loss of ubiquitination by the crl4-dcaf5 e3 ubiquitin |
| 364 | abrogates in vitro phosphorylation by chek2 and chek2-dependent stabilization of e2f1 upon dna damage. |
| 403 | decreased phosphorylation by gsk3b, leading to abolished interaction with usp11 and subsequent deubiquitination. |
| 411 | no retinoblastoma protein binding. no effect on interaction with and repression of cebpa. |
| 433 | decreased phosphorylation by gsk3b. |
Function
Pathways and Gene Ontology
Reactome pathways
17 pathways
| ID | Pathway |
|---|---|
| R-HSA-111448 | Activation of NOXA and translocation to mitochondria |
| R-HSA-113501 | Inhibition of replication initiation of damaged DNA by RB1/E2F1 |
| R-HSA-1362277 | Transcription of E2F targets under negative control by DREAM complex |
| R-HSA-1362300 | Transcription of E2F targets under negative control by p107 (RBL1) and p130 (RBL2) in complex with HDAC1 |
| R-HSA-139915 | Activation of PUMA and translocation to mitochondria |
| R-HSA-1912408 | Pre-NOTCH Transcription and Translation |
| R-HSA-2559580 | Oxidative Stress Induced Senescence |
| R-HSA-2559585 | Oncogene Induced Senescence |
| R-HSA-6804116 | TP53 Regulates Transcription of Genes Involved in G1 Cell Cycle Arrest |
| R-HSA-68911 | G2 Phase |
| R-HSA-69202 | Cyclin E associated events during G1/S transition |
| R-HSA-69205 | G1/S-Specific Transcription |
| R-HSA-69231 | Cyclin D associated events in G1 |
| R-HSA-69656 | Cyclin A:Cdk2-associated events at S phase entry |
| R-HSA-8953750 | Transcriptional Regulation by E2F6 |
| R-HSA-9616222 | Transcriptional regulation of granulopoiesis |
| R-HSA-9661069 | Defective binding of RB1 mutants to E2F1,(E2F2, E2F3) |
MSigDB gene sets: 659 (showing top):
GSE45365_NK_CELL_VS_CD8A_DC_DN, GSE45365_NK_CELL_VS_CD11B_DC_UP, RNGTGGGC_UNKNOWN, E2F_Q4, REACTOME_INHIBITION_OF_REPLICATION_INITIATION_OF_DAMAGED_DNA_BY_RB1_E2F1, REACTOME_SIGNALING_BY_NOTCH, MODULE_52, E2F_Q4_01, GOBP_REGULATION_OF_FAT_CELL_DIFFERENTIATION, BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN, REACTOME_G1_S_SPECIFIC_TRANSCRIPTION, HNF3ALPHA_Q6, PAX4_01, PID_TELOMERASE_PATHWAY, E2F4DP1_01
GO Biological Process (31): DNA damage checkpoint signaling (GO:0000077), negative regulation of transcription by RNA polymerase II (GO:0000122), DNA-templated transcription (GO:0006351), regulation of DNA-templated transcription (GO:0006355), regulation of transcription by RNA polymerase II (GO:0006357), spermatogenesis (GO:0007283), intrinsic apoptotic signaling pathway in response to DNA damage (GO:0008630), positive regulation of gene expression (GO:0010628), quinolinate biosynthetic process (GO:0019805), forebrain development (GO:0030900), response to lipopolysaccharide (GO:0032496), positive regulation of apoptotic process (GO:0043065), anoikis (GO:0043276), negative regulation of DNA binding (GO:0043392), negative regulation of fat cell differentiation (GO:0045599), negative regulation of DNA-templated transcription (GO:0045892), positive regulation of DNA-templated transcription (GO:0045893), positive regulation of transcription by RNA polymerase II (GO:0045944), positive regulation of fibroblast proliferation (GO:0048146), mRNA stabilization (GO:0048255), positive regulation of glial cell proliferation (GO:0060252), negative regulation of fat cell proliferation (GO:0070345), cellular response to fatty acid (GO:0071398), cellular response to hypoxia (GO:0071456), cellular response to xenobiotic stimulus (GO:0071466), intrinsic apoptotic signaling pathway by p53 class mediator (GO:0072332), lens fiber cell apoptotic process (GO:1990086), cellular response to nerve growth factor stimulus (GO:1990090), regulation of G1/S transition of mitotic cell cycle (GO:2000045), apoptotic process (GO:0006915), regulation of cell cycle (GO:0051726)
GO Molecular Function (14): RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), cis-regulatory region sequence-specific DNA binding (GO:0000987), DNA-binding transcription activator activity (GO:0001216), DNA binding (GO:0003677), DNA-binding transcription factor activity (GO:0003700), protein kinase binding (GO:0019901), sequence-specific DNA binding (GO:0043565), protein dimerization activity (GO:0046983), molecular adaptor activity (GO:0060090), DNA-binding transcription factor binding (GO:0140297), sequence-specific double-stranded DNA binding (GO:1990837), transcription cis-regulatory region binding (GO:0000976), protein binding (GO:0005515)
GO Cellular Component (10): nuclear chromosome (GO:0000228), chromatin (GO:0000785), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), centrosome (GO:0005813), protein-containing complex (GO:0032991), Rb-E2F complex (GO:0035189), RNA polymerase II transcription regulator complex (GO:0090575), transcription regulator complex (GO:0005667)
Reactome top-level categories
Rollup of top-13 pathways:
| Category | Pathways |
|---|---|
| Activation of BH3-only proteins | 2 |
| G0 and Early G1 | 2 |
| Cellular Senescence | 2 |
| G1/S Transition | 2 |
| E2F mediated regulation of DNA replication | 1 |
| Pre-NOTCH Expression and Processing | 1 |
| TP53 Regulates Transcription of Cell Cycle Genes | 1 |
| Mitotic G2-G2/M phases | 1 |
| G1 Phase | 1 |
| S Phase | 1 |
| Generic Transcription Pathway | 1 |
| Developmental Biology | 1 |
| Aberrant regulation of mitotic G1/S transition in cancer due to RB1 defects | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of DNA-templated transcription | 4 |
| regulation of transcription by RNA polymerase II | 3 |
| transcription by RNA polymerase II | 3 |
| DNA-templated transcription | 3 |
| transcription cis-regulatory region binding | 3 |
| cellular anatomical structure | 3 |
| gene expression | 2 |
| regulation of gene expression | 2 |
| apoptotic process | 2 |
| DNA binding | 2 |
| positive regulation of DNA-templated transcription | 2 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 2 |
| DNA-binding transcription factor activity | 2 |
| binding | 2 |
| chromosome | 2 |
| nuclear lumen | 2 |
| DNA integrity checkpoint signaling | 1 |
| signal transduction in response to DNA damage | 1 |
| negative regulation of DNA-templated transcription | 1 |
| RNA biosynthetic process | 1 |
| regulation of RNA biosynthetic process | 1 |
| developmental process involved in reproduction | 1 |
| male gamete generation | 1 |
| DNA damage response | 1 |
| intrinsic apoptotic signaling pathway | 1 |
| positive regulation of macromolecule biosynthetic process | 1 |
| dicarboxylic acid biosynthetic process | 1 |
| quinolinate metabolic process | 1 |
| pyridine-containing compound biosynthetic process | 1 |
| brain development | 1 |
| anatomical structure development | 1 |
| response to molecule of bacterial origin | 1 |
| response to lipid | 1 |
| response to oxygen-containing compound | 1 |
| regulation of apoptotic process | 1 |
| positive regulation of programmed cell death | 1 |
| negative regulation of binding | 1 |
| regulation of DNA binding | 1 |
| fat cell differentiation | 1 |
| negative regulation of cell differentiation | 1 |
Protein interactions and networks
STRING
4508 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| E2F1 | RB1 | P06400 | 996 |
| E2F1 | FOXO3 | O43524 | 995 |
| E2F1 | TFDP1 | Q14186 | 994 |
| E2F1 | HDAC1 | Q13547 | 992 |
| E2F1 | MYC | P01106 | 990 |
| E2F1 | CCNA2 | P20248 | 989 |
| E2F1 | CCNA1 | P78396 | 985 |
| E2F1 | MDM2 | Q00987 | 981 |
| E2F1 | TP53 | P04637 | 974 |
| E2F1 | CDKN1A | P38936 | 947 |
| E2F1 | TOPBP1 | Q92547 | 946 |
| E2F1 | DNMT1 | P26358 | 945 |
| E2F1 | NDN | Q99608 | 937 |
| E2F1 | CDKN2A | P42771 | 921 |
| E2F1 | HCFC1 | P51610 | 919 |
IntAct
186 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RB1 | E2F1 | psi-mi:“MI:0915”(physical association) | 0.980 |
| E2F1 | RB1 | psi-mi:“MI:0407”(direct interaction) | 0.980 |
| E2F1 | RB1 | psi-mi:“MI:0915”(physical association) | 0.980 |
| E2F1 | RB1 | psi-mi:“MI:0914”(association) | 0.980 |
| RB1 | E2F1 | psi-mi:“MI:0407”(direct interaction) | 0.980 |
BioGRID (492): E2F1 (Reconstituted Complex), RB1 (Affinity Capture-Western), E2F1 (Affinity Capture-RNA), E2F1 (Affinity Capture-RNA), E2F1 (Two-hybrid), E2F1 (Affinity Capture-Western), KAT2B (Affinity Capture-Western), E2F1 (Affinity Capture-Western), CREBBP (Reconstituted Complex), E2F1 (Affinity Capture-Western), E2F1 (Affinity Capture-Western), E2F1 (Affinity Capture-Western), E2F1 (Affinity Capture-Western), E2F1 (Affinity Capture-Western), TFDP1 (Affinity Capture-Western)
ESM2 similar proteins: A0JMD2, A5D7E9, A6NMN3, A7XW16, F1QDF8, F1RDM5, O00716, O09139, O35261, O35668, O42367, O43151, O54968, P14607, P59054, P59598, P97691, Q00175, Q01094, Q08050, Q14209, Q14494, Q16254, Q4V8F1, Q5DU28, Q5NUA6, Q5RA25, Q5W1J6, Q5ZL67, Q60664, Q60795, Q61321, Q61501, Q61985, Q63449, Q66IG8, Q6DJE5, Q6JPI3, Q76N89, Q7TS75
Diamond homologs: A0AVK6, A5HWA8, D4A4D7, E1BE02, E1BKK0, F1LMN3, F1QZ88, F6YVB9, F7EA39, O00716, O35261, O54917, O75461, P56931, Q01094, Q08DY6, Q14209, Q15329, Q16254, Q20619, Q27368, Q58FA4, Q5RIX9, Q61501, Q61502, Q62814, Q6DE14, Q6S7F2, Q8LSZ4, Q8R0K9, Q8RWL0, Q90977, Q96AV8, Q9FNY0, Q9FV70, Q9FV71, Q9LFQ9, O09139, O77051
SIGNOR signaling
72 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| CHEK2 | “up-regulates quantity by stabilization” | E2F1 | phosphorylation |
| MAPK3 | up-regulates | E2F1 | phosphorylation |
| CDK8 | down-regulates | E2F1 | phosphorylation |
| HES1 | “down-regulates quantity by repression” | E2F1 | “transcriptional regulation” |
| HES6 | “up-regulates quantity by expression” | E2F1 | “transcriptional regulation” |
| E2F1 | “up-regulates quantity by expression” | ATM | “transcriptional regulation” |
| E2F1 | up-regulates | HDAC1 | binding |
| E2F1 | “form complex” | SMAD7/HDAC1/E2F-1 | binding |
| HDAC3 | up-regulates | E2F1 | binding |
| E2F1 | up-regulates | PPARG | “transcriptional regulation” |
| ERK1/2 | “up-regulates activity” | E2F1 | phosphorylation |
| E2F1 | “up-regulates quantity by expression” | CDC25A | “transcriptional regulation” |
| E2F1 | “up-regulates quantity by expression” | CyclinE/CDK2 | “transcriptional regulation” |
| E2F1 | “up-regulates quantity by expression” | CCNE1 | “transcriptional regulation” |
| E2F1 | up-regulates | G1/S_transition | |
| E2F1 | “up-regulates quantity by expression” | ABCB1 | “transcriptional regulation” |
| E2F1 | “up-regulates quantity by expression” | BBC3 | “transcriptional regulation” |
| E2F1 | “up-regulates quantity by expression” | HIC1 | “transcriptional regulation” |
| E2F1 | “down-regulates quantity by repression” | HSPA5 | “transcriptional regulation” |
| E2F1 | “up-regulates quantity by expression” | LRBA | “transcriptional regulation” |
| E2F1 | “up-regulates quantity by expression” | MCPH1 | “transcriptional regulation” |
| E2F1 | “up-regulates quantity by expression” | ELF4 | “transcriptional regulation” |
| E2F1 | “up-regulates quantity by expression” | RASGRP1 | “transcriptional regulation” |
| E2F1 | “up-regulates quantity by expression” | RASGEF1B | “transcriptional regulation” |
| E2F1 | “up-regulates quantity by expression” | RRM1 | “transcriptional regulation” |
| E2F1 | “up-regulates quantity by expression” | DHFR | “transcriptional regulation” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 65 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Defective binding of RB1 mutants to E2F1,(E2F2, E2F3) | 5 | 61.0× | 8e-07 |
| TP53 Regulates Transcription of Genes Involved in G2 Cell Cycle Arrest | 5 | 57.8× | 1e-06 |
| Transcription of E2F targets under negative control by DREAM complex | 5 | 52.3× | 2e-06 |
| Oncogene Induced Senescence | 8 | 51.7× | 1e-09 |
| Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer | 6 | 42.5× | 4e-07 |
| G0 and Early G1 | 5 | 42.2× | 4e-06 |
| SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription | 7 | 41.5× | 3e-08 |
| G1/S-Specific Transcription | 6 | 41.2× | 4e-07 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cellular response to insulin stimulus | 6 | 16.5× | 2e-04 |
| chromatin remodeling | 10 | 11.8× | 3e-06 |
| negative regulation of cell growth | 5 | 11.6× | 3e-03 |
| regulation of cell cycle | 9 | 10.8× | 2e-05 |
| negative regulation of gene expression | 7 | 7.8× | 2e-03 |
| DNA damage response | 8 | 6.9× | 1e-03 |
| transcription by RNA polymerase II | 6 | 6.8× | 7e-03 |
| positive regulation of apoptotic process | 7 | 6.4× | 4e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
57 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 35 |
| Likely benign | 8 |
| Benign | 9 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1707 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:47353372:G:GC | acceptor_gain | 1.0000 |
| 10:47353514:C:CT | donor_loss | 1.0000 |
| 10:47353515:A:AT | donor_loss | 1.0000 |
| 10:47353516:GAC:G | donor_loss | 1.0000 |
| 10:47353517:TGAC:T | donor_loss | 1.0000 |
| 10:47355518:ACC:A | donor_loss | 1.0000 |
| 10:47355520:GTA:G | donor_loss | 1.0000 |
| 10:47355521:CGTA:C | donor_loss | 1.0000 |
| 20:33676980:C:CC | acceptor_gain | 1.0000 |
| 20:33677102:CACC:C | donor_loss | 1.0000 |
| 20:33677327:AGTT:A | acceptor_gain | 1.0000 |
| 20:33677420:TCTCA:T | donor_loss | 1.0000 |
| 20:33677421:CTCA:C | donor_loss | 1.0000 |
| 20:33677422:TCAC:T | donor_loss | 1.0000 |
| 20:33677423:CA:C | donor_loss | 1.0000 |
| 20:33677424:A:T | donor_loss | 1.0000 |
| 20:33677425:C:CT | donor_loss | 1.0000 |
| 20:33678216:T:TA | donor_gain | 1.0000 |
| 20:33678235:G:C | donor_gain | 1.0000 |
| 20:33678349:TGCCC:T | acceptor_gain | 1.0000 |
| 20:33678350:GCCC:G | acceptor_gain | 1.0000 |
| 20:33678351:CCC:C | acceptor_gain | 1.0000 |
| 20:33678351:CCCC:C | acceptor_gain | 1.0000 |
| 20:33678352:CC:C | acceptor_gain | 1.0000 |
| 20:33678352:CCCTG:C | acceptor_gain | 1.0000 |
| 20:33678353:CCTG:C | acceptor_gain | 1.0000 |
| 20:33678354:C:CC | acceptor_gain | 1.0000 |
| 20:33678354:C:CG | acceptor_loss | 1.0000 |
| 20:33678355:T:A | acceptor_loss | 1.0000 |
| 20:33679753:A:AC | donor_gain | 1.0000 |
AlphaMissense
2804 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 20:33679764:A:T | I188N | 1.000 |
| 20:33679769:G:C | N186K | 1.000 |
| 20:33679769:G:T | N186K | 1.000 |
| 20:33679772:C:A | K185N | 1.000 |
| 20:33679772:C:G | K185N | 1.000 |
| 20:33679774:T:C | K185E | 1.000 |
| 20:33679781:C:A | K182N | 1.000 |
| 20:33679781:C:G | K182N | 1.000 |
| 20:33679783:T:C | K182E | 1.000 |
| 20:33679788:A:T | I180N | 1.000 |
| 20:33679791:A:G | L179P | 1.000 |
| 20:33679801:C:G | G176R | 1.000 |
| 20:33679806:A:G | L174P | 1.000 |
| 20:33679806:A:T | L174H | 1.000 |
| 20:33679809:A:T | V173D | 1.000 |
| 20:33679811:G:C | N172K | 1.000 |
| 20:33679811:G:T | N172K | 1.000 |
| 20:33679813:T:C | N172D | 1.000 |
| 20:33679818:A:C | I170S | 1.000 |
| 20:33679818:A:T | I170N | 1.000 |
| 20:33679820:G:C | D169E | 1.000 |
| 20:33679820:G:T | D169E | 1.000 |
| 20:33679821:T:A | D169V | 1.000 |
| 20:33679821:T:C | D169G | 1.000 |
| 20:33679821:T:G | D169A | 1.000 |
| 20:33679822:C:A | D169Y | 1.000 |
| 20:33679822:C:G | D169H | 1.000 |
| 20:33679822:C:T | D169N | 1.000 |
| 20:33679824:T:C | Y168C | 1.000 |
| 20:33679825:A:G | Y168H | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000130244 (20:33684356 C>T), RS1000295629 (20:33678601 T>C), RS1000518535 (20:33684056 C>G,T), RS1000962550 (20:33676496 C>T), RS1001002474 (20:33677017 C>T), RS1001124749 (20:33682922 T>C), RS1001462616 (20:33685678 C>T), RS1001505758 (20:33683354 G>C), RS1001567608 (20:33679398 G>T), RS1001619912 (20:33679093 T>C), RS1001726041 (20:33685896 C>T), RS1001773214 (20:33685431 T>C), RS1001794744 (20:33684443 C>A,G), RS1002056610 (20:33684687 T>C), RS1002205824 (20:33685673 G>A,C)
Disease associations
OMIM: gene MIM:189971 | disease phenotypes:
GenCC curated gene-disease
Mondo (2): prostate cancer (MONDO:0008315), long QT syndrome (MONDO:0002442)
Orphanet (1): Familial prostate cancer (Orphanet:1331)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006979_538 | Heel bone mineral density | 1.000000e-19 |
| GCST008839_103 | Height | 5.000000e-13 |
| GCST012226_838 | Waist circumference adjusted for body mass index | 4.000000e-08 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009270 | heel bone mineral density |
| EFO:0007789 | BMI-adjusted waist circumference |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008133 | Long QT Syndrome | C14.280.067.565; C14.280.123.625; C16.131.240.400.715; C23.550.073.547 |
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL4382 (SINGLE PROTEIN), CHEMBL4630726 (PROTEIN FAMILY)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
179 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases reaction, increases expression, decreases expression, affects expression, affects reaction (+1 more) | 7 |
| bisphenol A | affects expression, increases expression, affects cotreatment | 6 |
| Arsenic Trioxide | affects binding, decreases reaction, increases reaction, decreases expression, increases expression (+1 more) | 6 |
| Benzo(a)pyrene | increases expression, increases methylation, increases reaction, decreases reaction, affects activity (+1 more) | 6 |
| Estradiol | decreases reaction, increases expression, affects reaction, affects expression, affects binding (+1 more) | 6 |
| Tretinoin | decreases reaction, increases expression, decreases expression | 6 |
| Cannabidiol | decreases expression, increases expression, affects cotreatment | 5 |
| Doxorubicin | affects expression, affects binding, decreases reaction, increases expression, increases reaction (+3 more) | 4 |
| Cadmium Chloride | decreases expression, increases expression, decreases reaction | 4 |
| methylselenic acid | affects expression, affects binding, increases reaction, decreases expression | 3 |
| (+)-JQ1 compound | affects cotreatment, decreases expression, decreases activity | 3 |
| Troglitazone | affects cotreatment, decreases expression | 3 |
| Aspirin | affects cotreatment, affects binding, decreases reaction, decreases expression | 3 |
| Cisplatin | decreases expression, increases acetylation, increases expression | 3 |
| Copper | affects binding, decreases expression, increases expression | 3 |
| Nicotine | decreases reaction, increases expression, affects binding, increases reaction | 3 |
| Valproic Acid | affects expression, increases expression, increases methylation | 3 |
| zinc chromate | decreases expression, affects localization, affects reaction, increases abundance | 2 |
| cadmium acetate | affects binding, increases reaction, decreases activity, decreases expression, affects localization | 2 |
| hydroquinone | increases expression, increases reaction | 2 |
| chromium hexavalent ion | affects localization, affects reaction, increases abundance, decreases expression | 2 |
| alvocidib | increases expression, increases response to substance, decreases expression | 2 |
| 2,2’,4,4’-tetrabromodiphenyl ether | increases expression | 2 |
| Gefitinib | decreases expression | 2 |
| Acetaminophen | increases expression | 2 |
| Arsenic | decreases expression, increases expression, affects reaction | 2 |
| Chelating Agents | affects binding, decreases expression, increases expression | 2 |
| Oxygen | affects cotreatment, decreases expression | 2 |
| Quercetin | increases expression | 2 |
| Tamoxifen | increases expression, decreases expression, affects binding, increases reaction | 2 |
ChEMBL screening assays
12 unique, capped per target: 12 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2445129 | Binding | Induction of E2F1 ubiquitination in human A549 cells at 0.1 uM after 8 hrs by immunoprecipitation and Western blotting analysis | Largazole Arrests Cell Cycle at G1 Phase and Triggers Proteasomal Degradation of E2F1 in Lung Cancer Cells. — ACS Med Chem Lett |
Cellosaurus cell lines
13 cell lines: 8 cancer cell line, 3 embryonic stem cell, 2 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A1B8 | SEES3-1V human E2F1, clone1 | Embryonic stem cell | Male |
| CVCL_A1B9 | SEES3-1V human E2F1, clone2 | Embryonic stem cell | Male |
| CVCL_A1C0 | SEES3-1V human E2F1, clone3 | Embryonic stem cell | Male |
| CVCL_AW19 | K562 eGFP-E2F1 | Cancer cell line | Female |
| CVCL_B1AS | Abcam HEK293 E2F1 KO | Transformed cell line | Female |
| CVCL_B6FC | HepZ | Transformed cell line | Sex unspecified |
| CVCL_B8EY | Abcam HCT 116 E2F1 KO | Cancer cell line | Male |
| CVCL_B8V1 | Abcam MCF-7 E2F1 KO | Cancer cell line | Female |
| CVCL_B9H6 | Abcam A-549 E2F1 KO | Cancer cell line | Male |
| CVCL_HA20 | MCF-7/E2F1 | Cancer cell line | Female |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | PHASE4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | PHASE4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | PHASE4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | PHASE4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | PHASE4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | PHASE4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | PHASE4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | PHASE4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | PHASE4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
| NCT00242554 | PHASE4 | COMPLETED | Open-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases |
| NCT00280098 | PHASE4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | PHASE4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | PHASE4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | PHASE4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | PHASE4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
| NCT00422708 | PHASE4 | COMPLETED | Local Anesthesia for Prostate Biopsy |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00590213 | PHASE4 | COMPLETED | Compare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX |
| NCT00629330 | PHASE4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | PHASE4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | PHASE4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | PHASE4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
| NCT00906269 | PHASE4 | UNKNOWN | Can Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer |
| NCT00953277 | PHASE4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | PHASE4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | PHASE4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | PHASE4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | PHASE4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | PHASE4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | PHASE4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | PHASE4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | PHASE4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | PHASE4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
| NCT01511874 | PHASE4 | COMPLETED | Efficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer |
| NCT01512472 | PHASE4 | TERMINATED | Firmagon (Degarelix) Intermittent Therapy |
| NCT01547416 | PHASE4 | COMPLETED | The Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function |
| NCT01571544 | PHASE4 | COMPLETED | The Use of Thermal Suits as Preventing Hypothermia During Surgery |
| NCT01581749 | PHASE4 | UNKNOWN | Evaluation of Truebeam for Low-Intermediate Risk Prostate Cancer |
| NCT01649635 | PHASE4 | COMPLETED | Study of Cabazitaxel Combined With Prednisone and Prophylaxis of Neutropenia Complications in the Treatment of Patients With Metastatic Castration-resistant Prostate Cancer |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.