ECI1-AS1

Summary

ECI1-AS1 (ECI1 antisense RNA 1, HGNC:56088) is a long non-coding RNA gene on chromosome 16p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56088
Approved symbol	ECI1-AS1
Name	ECI1 antisense RNA 1
Location	16p13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261663
Ensembl biotype	lncRNA
Entrez	123706507
RNAcentral	URS00026A20C5 — lncRNA, 731 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000565709

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000565709 — 2 exons

Exon	Start	End
ENSE00002589427	2241635	2241818
ENSE00002617237	2240487	2241090

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 81.58.

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	81.58	silver quality
sural nerve	UBERON:0015488	79.43	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.89	silver quality
apex of heart	UBERON:0002098	76.03	gold quality
right lobe of liver	UBERON:0001114	73.27	gold quality
hindlimb stylopod muscle	UBERON:0004252	73.22	gold quality
right hemisphere of cerebellum	UBERON:0014890	72.17	gold quality
cerebellar hemisphere	UBERON:0002245	72.14	gold quality
cerebellar cortex	UBERON:0002129	72.09	gold quality
cerebellum	UBERON:0002037	71.97	gold quality
right lobe of thyroid gland	UBERON:0001119	71.90	gold quality
lower esophagus mucosa	UBERON:0035834	71.64	gold quality
skin of leg	UBERON:0001511	71.21	gold quality
zone of skin	UBERON:0000014	71.00	gold quality
heart left ventricle	UBERON:0002084	70.92	gold quality
skin of abdomen	UBERON:0001416	70.90	gold quality
mucosa of transverse colon	UBERON:0004991	70.88	gold quality
left lobe of thyroid gland	UBERON:0001120	70.75	gold quality
cortex of kidney	UBERON:0001225	70.72	gold quality
thyroid gland	UBERON:0002046	70.37	gold quality
muscle of leg	UBERON:0001383	70.17	gold quality
gastrocnemius	UBERON:0001388	70.03	gold quality
metanephros cortex	UBERON:0010533	69.38	gold quality
liver	UBERON:0002107	69.06	gold quality
skeletal muscle tissue	UBERON:0001134	68.72	gold quality
heart	UBERON:0000948	68.57	gold quality
bone marrow cell	CL:0002092	68.26	silver quality
right atrium auricular region	UBERON:0006631	68.05	gold quality
mucosa of stomach	UBERON:0001199	67.85	gold quality
right lung	UBERON:0002167	67.65	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.82

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.