EDRF1-DT

Summary

EDRF1-DT (EDRF1 divergent transcript, HGNC:54128) is a long non-coding RNA gene on chromosome 10q26.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54128
Approved symbol	EDRF1-DT
Name	EDRF1 divergent transcript
Location	10q26.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224023
Ensembl biotype	lncRNA
Entrez	399821
RNAcentral	URS000075B8C1 — lncRNA, 2527 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000419400, ENST00000423178, ENST00000430970, ENST00000525909, ENST00000527483, ENST00000528844, ENST00000531977, ENST00000715405, ENST00000715406, ENST00000715407, ENST00000715408, ENST00000715409, ENST00000715410, ENST00000715411

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419400 — 4 exons

Exon	Start	End
ENSE00001602994	125700437	125700555
ENSE00001665405	125707401	125707549
ENSE00001763350	125704187	125704215
ENSE00003665513	125707052	125707200

Expression profiles

Bgee: expression breadth ubiquitous, 160 present calls, max score 89.28.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 2.3561 / max 54.2742, expressed in 1230 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
111893	2.3561	1230

Top tissues by expression

247 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.28	gold quality
sural nerve	UBERON:0015488	83.12	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	80.28	gold quality
body of pancreas	UBERON:0001150	78.85	gold quality
pancreas	UBERON:0001264	76.55	gold quality
ventricular zone	UBERON:0003053	76.50	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	76.50	gold quality
islet of Langerhans	UBERON:0000006	75.73	gold quality
right testis	UBERON:0004534	75.61	gold quality
right adrenal gland	UBERON:0001233	75.15	gold quality
left testis	UBERON:0004533	75.10	gold quality
prefrontal cortex	UBERON:0000451	74.69	gold quality
right adrenal gland cortex	UBERON:0035827	74.59	gold quality
Brodmann (1909) area 9	UBERON:0013540	74.34	gold quality
hindlimb stylopod muscle	UBERON:0004252	74.27	gold quality
muscle of leg	UBERON:0001383	73.92	gold quality
skin of abdomen	UBERON:0001416	73.47	gold quality
gastrocnemius	UBERON:0001388	73.28	gold quality
spinal cord	UBERON:0002240	73.25	gold quality
ganglionic eminence	UBERON:0004023	73.15	gold quality
left adrenal gland	UBERON:0001234	73.11	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	73.06	gold quality
testis	UBERON:0000473	72.86	gold quality
left adrenal gland cortex	UBERON:0035825	72.71	gold quality
skin of leg	UBERON:0001511	72.65	gold quality
right uterine tube	UBERON:0001302	72.34	gold quality
calcaneal tendon	UBERON:0003701	72.17	gold quality
anterior cingulate cortex	UBERON:0009835	72.04	gold quality
hypothalamus	UBERON:0001898	71.64	gold quality
minor salivary gland	UBERON:0001830	71.54	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.