EEF2KMT
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Also known as SB153MGC19636EFM3
Summary
EEF2KMT (eukaryotic elongation factor 2 lysine methyltransferase, HGNC:32221) is a protein-coding gene on chromosome 16p13.3, encoding Protein-lysine N-methyltransferase EEF2KMT (Q96G04). Catalyzes the trimethylation of eukaryotic elongation factor 2 (EEF2) on ‘Lys-525’. It is a selective cancer dependency (DepMap: 84.9% of cell lines).
Enables protein-lysine N-methyltransferase activity. Involved in peptidyl-lysine trimethylation. Located in cytoplasm. Part of protein-containing complex.
Source: NCBI Gene 196483 — RefSeq curated summary.
At a glance
- GWAS associations: 5
- Clinical variants (ClinVar): 117 total — 1 pathogenic
- Cancer dependency (DepMap): dependent in 84.9% of screened cell lines
- MANE Select transcript:
NM_201400
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:32221 |
| Approved symbol | EEF2KMT |
| Name | eukaryotic elongation factor 2 lysine methyltransferase |
| Location | 16p13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | SB153, MGC19636, EFM3 |
| Ensembl gene | ENSG00000118894 |
| Ensembl biotype | protein_coding |
| OMIM | 615263 |
| Entrez | 196483 |
Gene structure
Transcript identifiers
Ensembl transcripts: 14 — 8 protein_coding, 3 nonsense_mediated_decay, 3 retained_intron
ENST00000427587, ENST00000458008, ENST00000585436, ENST00000585975, ENST00000586444, ENST00000587133, ENST00000587161, ENST00000587200, ENST00000587608, ENST00000902788, ENST00000940846, ENST00000940847, ENST00000940848, ENST00000956562
RefSeq mRNA: 3 — MANE Select: NM_201400
NM_001289029, NM_201400, NM_201598
CCDS: CCDS10529, CCDS10530, CCDS73823
Canonical transcript exons
ENST00000427587 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002832093 | 5097644 | 5097795 |
| ENSE00003483343 | 5090084 | 5090349 |
| ENSE00003511143 | 5095452 | 5095514 |
| ENSE00003513644 | 5090432 | 5090565 |
| ENSE00003540900 | 5089107 | 5089256 |
| ENSE00003572713 | 5091794 | 5091895 |
| ENSE00003680657 | 5093484 | 5093564 |
| ENSE00003894264 | 5084284 | 5085732 |
Expression profiles
Bgee: expression breadth ubiquitous, 182 present calls, max score 85.83.
FANTOM5 (CAGE): breadth broad, TPM avg 0.4829 / max 20.8486, expressed in 248 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 156146 | 0.4829 | 248 |
Top tissues by expression
277 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 85.83 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.44 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 84.30 | gold quality |
| stromal cell of endometrium | CL:0002255 | 83.77 | gold quality |
| left testis | UBERON:0004533 | 82.42 | gold quality |
| right testis | UBERON:0004534 | 82.27 | gold quality |
| right adrenal gland | UBERON:0001233 | 81.76 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 81.43 | gold quality |
| apex of heart | UBERON:0002098 | 81.24 | gold quality |
| left adrenal gland | UBERON:0001234 | 81.04 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 80.82 | gold quality |
| testis | UBERON:0000473 | 80.76 | gold quality |
| right lobe of liver | UBERON:0001114 | 80.50 | gold quality |
| granulocyte | CL:0000094 | 80.36 | gold quality |
| gastrocnemius | UBERON:0001388 | 80.07 | gold quality |
| body of pancreas | UBERON:0001150 | 80.03 | gold quality |
| adenohypophysis | UBERON:0002196 | 79.62 | gold quality |
| adrenal cortex | UBERON:0001235 | 79.54 | gold quality |
| body of stomach | UBERON:0001161 | 79.20 | gold quality |
| muscle of leg | UBERON:0001383 | 79.18 | gold quality |
| adrenal gland | UBERON:0002369 | 79.13 | gold quality |
| left coronary artery | UBERON:0001626 | 79.08 | gold quality |
| left uterine tube | UBERON:0001303 | 78.94 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 78.72 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 78.68 | gold quality |
| rectum | UBERON:0001052 | 78.62 | gold quality |
| transverse colon | UBERON:0001157 | 78.53 | gold quality |
| right coronary artery | UBERON:0001625 | 78.53 | gold quality |
| islet of Langerhans | UBERON:0000006 | 78.26 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 78.23 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 3.59 |
| E-MTAB-6379 | no | 73.23 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): NR1I2
miRNA regulators (miRDB)
60 targeting EEF2KMT, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-10401-5P | 99.99 | 65.79 | 948 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-557 | 99.96 | 70.01 | 1640 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-4778-3P | 99.93 | 70.40 | 1818 |
| HSA-MIR-515-5P | 99.92 | 69.82 | 2343 |
| HSA-MIR-519E-5P | 99.92 | 69.62 | 2358 |
| HSA-MIR-4648 | 99.91 | 67.00 | 710 |
| HSA-MIR-129-5P | 99.88 | 70.26 | 3273 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-5582-3P | 99.86 | 72.48 | 4221 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-6875-3P | 99.82 | 70.26 | 2983 |
| HSA-MIR-3180-5P | 99.82 | 69.12 | 2422 |
| HSA-MIR-4659A-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-4659B-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-7152-5P | 99.60 | 69.33 | 2094 |
| HSA-MIR-762 | 99.58 | 66.61 | 1994 |
| HSA-MIR-543 | 99.52 | 69.03 | 2595 |
| HSA-MIR-4498 | 99.47 | 67.42 | 2360 |
| HSA-MIR-12132 | 99.47 | 68.90 | 1341 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 84.9% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 2)
- Previously uncharacterized lysine-specific methyltransferase FAM86A and Yjr129c introduce a functionally important lysine methylation in eEF2. (PMID:25231979)
- The FAM86 domain of FAM86A confers substrate specificity to promote EEF2-Lys525 methylation. (PMID:37209825)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | eef2kmt | ENSDARG00000054950 |
| mus_musculus | Eef2kmt | ENSMUSG00000022544 |
| rattus_norvegicus | Eef2kmt | ENSRNOG00000002876 |
| drosophila_melanogaster | CG7889 | FBGN0031003 |
| caenorhabditis_elegans | WBGENE00011144 |
Paralogs (2): FAM86B2 (ENSG00000145002), FAM86B1 (ENSG00000186523)
Protein
Protein identifiers
Protein-lysine N-methyltransferase EEF2KMT — Q96G04 (reviewed: Q96G04)
Alternative names: eEF2-lysine methyltransferase
All UniProt accessions (4): Q96G04, K7EIJ3, K7EQE4, K7ES84
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the trimethylation of eukaryotic elongation factor 2 (EEF2) on ‘Lys-525’.
Subunit / interactions. Interacts with FAM86B2 and FAM86C1P.
Subcellular location. Cytoplasm.
Similarity. Belongs to the class I-like SAM-binding methyltransferase superfamily. EEF2KMT family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96G04-1 | 1 | yes |
| Q96G04-2 | 2 |
RefSeq proteins (3): NP_001275958, NP_958802, NP_963892 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR019410 | Methyltransf_16 | Family |
| IPR029063 | SAM-dependent_MTases_sf | Homologous_superfamily |
| IPR029426 | FAM86_N | Domain |
Pfam: PF10294, PF14904
Catalyzed reactions (Rhea), 1 shown:
- L-lysyl-[protein] + 3 S-adenosyl-L-methionine = N(6),N(6),N(6)-trimethyl-L-lysyl-[protein] + 3 S-adenosyl-L-homocysteine + 3 H(+) (RHEA:54192)
UniProt features (40 total): helix 14, strand 10, sequence variant 5, binding site 4, turn 4, chain 1, modified residue 1, splice variant 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8FZB | X-RAY DIFFRACTION | 3.35 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96G04-F1 | 92.31 | 0.81 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (4): 139; 165–167; 228; 247
Post-translational modifications (1): 1
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-8876725 | Protein methylation |
MSigDB gene sets: 60 (showing top):
BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN, CCAWYNNGAAR_UNKNOWN, BHATI_G2M_ARREST_BY_2METHOXYESTRADIOL_DN, GOBP_PEPTIDYL_LYSINE_MODIFICATION, GATA6_01, GOBP_PEPTIDYL_LYSINE_TRIMETHYLATION, GOBP_METHYLATION, IVANOVA_HEMATOPOIESIS_EARLY_PROGENITOR, GOBP_PEPTIDYL_LYSINE_METHYLATION, GOMF_N_METHYLTRANSFERASE_ACTIVITY, GOMF_PROTEIN_METHYLTRANSFERASE_ACTIVITY, GOMF_S_ADENOSYLMETHIONINE_DEPENDENT_METHYLTRANSFERASE_ACTIVITY, GOMF_TRANSFERASE_ACTIVITY_TRANSFERRING_ONE_CARBON_GROUPS, GOMF_LYSINE_N_METHYLTRANSFERASE_ACTIVITY, REACTOME_POST_TRANSLATIONAL_PROTEIN_MODIFICATION
GO Biological Process (2): peptidyl-lysine trimethylation (GO:0018023), methylation (GO:0032259)
GO Molecular Function (4): protein-lysine N-methyltransferase activity (GO:0016279), protein binding (GO:0005515), methyltransferase activity (GO:0008168), transferase activity (GO:0016740)
GO Cellular Component (3): cytoplasm (GO:0005737), cytosol (GO:0005829), protein-containing complex (GO:0032991)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Post-translational protein modification | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| peptidyl-lysine methylation | 1 |
| metabolic process | 1 |
| protein methyltransferase activity | 1 |
| lysine N-methyltransferase activity | 1 |
| binding | 1 |
| transferase activity, transferring one-carbon groups | 1 |
| catalytic activity | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| cellular_component | 1 |
Protein interactions and networks
STRING
366 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EEF2KMT | EEF1AKMT2 | Q5JPI9 | 806 |
| EEF2KMT | VCPKMT | Q9H867 | 699 |
| EEF2KMT | METTL21A | Q8WXB1 | 674 |
| EEF2KMT | ETFBKMT | Q8IXQ9 | 651 |
| EEF2KMT | METTL22 | Q9BUU2 | 648 |
| EEF2KMT | METTL21C | Q5VZV1 | 622 |
| EEF2KMT | EEF1AKMT1 | Q8WVE0 | 613 |
| EEF2KMT | KIN | O60870 | 609 |
| EEF2KMT | METTL18 | O95568 | 601 |
| EEF2KMT | METTL23 | Q86XA0 | 580 |
| EEF2KMT | ANKRD62 | A6NC57 | 563 |
| EEF2KMT | CAMKMT | Q7Z624 | 538 |
| EEF2KMT | MTMR12 | Q9C0I1 | 524 |
| EEF2KMT | EEF2 | P13639 | 485 |
| EEF2KMT | ANTKMT | Q9BQD7 | 464 |
IntAct
49 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| EEF2KMT | PRTFDC1 | psi-mi:“MI:0915”(physical association) | 0.830 |
| PRTFDC1 | EEF2KMT | psi-mi:“MI:0915”(physical association) | 0.830 |
| EEF2KMT | ZNF620 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EEF2KMT | NR0B1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EEF2KMT | PICK1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PRKAR1B | EEF2KMT | psi-mi:“MI:0915”(physical association) | 0.560 |
| LNX1 | EEF2KMT | psi-mi:“MI:0915”(physical association) | 0.560 |
| KIAA1328 | EEF2KMT | psi-mi:“MI:0915”(physical association) | 0.560 |
| IFT88 | EEF2KMT | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF213 | EEF2KMT | psi-mi:“MI:0915”(physical association) | 0.560 |
| TRIP13 | EEF2KMT | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF620 | EEF2KMT | psi-mi:“MI:0915”(physical association) | 0.560 |
| HPRT1 | EEF2KMT | psi-mi:“MI:0915”(physical association) | 0.560 |
| NR0B1 | EEF2KMT | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF35 | EEF2KMT | psi-mi:“MI:0915”(physical association) | 0.560 |
| EEF2KMT | BCAT2 | psi-mi:“MI:0914”(association) | 0.530 |
| RFFL | TUSC2 | psi-mi:“MI:0914”(association) | 0.530 |
| PARL | H2AC21 | psi-mi:“MI:0914”(association) | 0.350 |
| PARL | CCDC92 | psi-mi:“MI:0914”(association) | 0.350 |
| EEF2KMT | FAM86B2 | psi-mi:“MI:0914”(association) | 0.350 |
| EEF2KMT | PRTFDC1 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (40): EEF2 (Affinity Capture-MS), EFT1 (Biochemical Activity), EFT2 (Biochemical Activity), EEF2 (Biochemical Activity), EEF2KMT (Two-hybrid), EEF2 (Affinity Capture-MS), BCAT2 (Affinity Capture-MS), ECI2 (Affinity Capture-MS), GTPBP1 (Affinity Capture-MS), USP15 (Affinity Capture-MS), GALC (Affinity Capture-MS), EEF2KMT (Affinity Capture-MS), EEF2KMT (Two-hybrid), EEF2KMT (Affinity Capture-MS), BCAT2 (Affinity Capture-MS)
ESM2 similar proteins: A2AA28, A4FV42, A4IGU3, A5PK19, A6QP81, A7MBI7, D3YWP0, F6PHZ6, O88587, P0C5J1, P13439, P17256, P21964, P22734, P55345, Q03426, Q14CH1, Q1JPJ9, Q28IN4, Q3TY86, Q3UZW7, Q497B8, Q4JIJ2, Q569C4, Q5BLD8, Q5E9T8, Q5H879, Q5RE14, Q5VZV1, Q6DJF8, Q6GQ33, Q6P3E7, Q8BLU2, Q8BNV1, Q8C1A3, Q8C436, Q8CDZ2, Q8N6R0, Q8N7N1, Q8WXB1
Diamond homologs: A6NEL3, P0C5J1, Q1JPJ9, Q3UZW7, Q8N7N1, Q96G04, Q9NVL1, A4FV42, A4FV98, A4IGU3, A6NDL7, A6QP81, A7IQW5, D3YWP0, F4JNX3, O14118, P38347, P40389, Q28IN4, Q58DC7, Q5BLD8, Q5VZV1, Q8BLU2, Q8C436, Q8CDZ2, Q8R1C6, Q8WXB1, Q96AZ1, Q9CQL0, Q9H867
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
117 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 84 |
| Likely benign | 20 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3243497 | NC_000016.9:g.(?5132540)(5134882_?)del | Pathogenic |
SpliceAI
1333 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 16:5084746:GCAG:G | acceptor_loss | 1.0000 |
| 16:5084748:A:AG | acceptor_gain | 1.0000 |
| 16:5084748:AGAT:A | acceptor_gain | 1.0000 |
| 16:5084749:G:GT | acceptor_gain | 1.0000 |
| 16:5084749:GA:G | acceptor_gain | 1.0000 |
| 16:5084749:GAT:G | acceptor_gain | 1.0000 |
| 16:5084749:GATG:G | acceptor_gain | 1.0000 |
| 16:5084749:GATGC:G | acceptor_gain | 1.0000 |
| 16:5085733:C:CC | acceptor_gain | 1.0000 |
| 16:5089102:CTCA:C | donor_loss | 1.0000 |
| 16:5089103:TCACC:T | donor_loss | 1.0000 |
| 16:5089104:CAC:C | donor_loss | 1.0000 |
| 16:5089106:C:A | donor_loss | 1.0000 |
| 16:5089106:CCTAG:C | donor_gain | 1.0000 |
| 16:5089110:G:C | donor_gain | 1.0000 |
| 16:5089254:CAT:C | acceptor_gain | 1.0000 |
| 16:5089257:C:CC | acceptor_gain | 1.0000 |
| 16:5090561:GAGGG:G | acceptor_gain | 1.0000 |
| 16:5090563:GGG:G | acceptor_gain | 1.0000 |
| 16:5090563:GGGC:G | acceptor_loss | 1.0000 |
| 16:5090564:GG:G | acceptor_gain | 1.0000 |
| 16:5090565:GC:G | acceptor_loss | 1.0000 |
| 16:5090566:C:CA | acceptor_loss | 1.0000 |
| 16:5090566:C:CC | acceptor_gain | 1.0000 |
| 16:5090572:C:CT | acceptor_gain | 1.0000 |
| 16:5090573:A:T | acceptor_gain | 1.0000 |
| 16:5091892:CGTG:C | acceptor_gain | 1.0000 |
| 16:5091896:C:CC | acceptor_gain | 1.0000 |
| 16:5093561:CAGT:C | acceptor_gain | 1.0000 |
| 16:5095513:CT:C | acceptor_gain | 1.0000 |
AlphaMissense
2114 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 16:5090265:G:C | S187R | 0.985 |
| 16:5090265:G:T | S187R | 0.985 |
| 16:5090267:T:G | S187R | 0.985 |
| 16:5097680:G:C | F20L | 0.982 |
| 16:5097680:G:T | F20L | 0.982 |
| 16:5097682:A:G | F20L | 0.982 |
| 16:5090328:A:C | S166R | 0.981 |
| 16:5090328:A:T | S166R | 0.981 |
| 16:5090330:T:G | S166R | 0.981 |
| 16:5093494:A:G | L77P | 0.974 |
| 16:5093505:A:C | F73L | 0.974 |
| 16:5093505:A:T | F73L | 0.974 |
| 16:5093507:A:G | F73L | 0.974 |
| 16:5090344:A:T | V161D | 0.972 |
| 16:5097649:A:G | W31R | 0.970 |
| 16:5097649:A:T | W31R | 0.970 |
| 16:5090095:A:T | V244D | 0.966 |
| 16:5090493:A:G | W139R | 0.965 |
| 16:5090493:A:T | W139R | 0.965 |
| 16:5093506:A:G | F73S | 0.965 |
| 16:5090214:A:C | N204K | 0.955 |
| 16:5090214:A:T | N204K | 0.955 |
| 16:5091803:G:C | S111R | 0.954 |
| 16:5091803:G:T | S111R | 0.954 |
| 16:5091805:T:G | S111R | 0.954 |
| 16:5090491:C:A | W139C | 0.953 |
| 16:5090491:C:G | W139C | 0.953 |
| 16:5090144:A:G | W228R | 0.950 |
| 16:5090144:A:T | W228R | 0.950 |
| 16:5090276:A:C | Y184D | 0.950 |
dbSNP variants (sampled 300 via entrez): RS1000071413 (16:5094815 A>G), RS1000082838 (16:5098815 A>G), RS1000237447 (16:5085833 T>G), RS1000952792 (16:5087531 G>C), RS1001005100 (16:5087653 C>G,T), RS1001195121 (16:5094162 G>A), RS1001249458 (16:5098601 G>A,C), RS1001362585 (16:5098467 G>A,T), RS1001646513 (16:5094373 C>T), RS1002305270 (16:5090638 C>A,T), RS1002582119 (16:5087278 G>A), RS1002630817 (16:5089826 G>A), RS1003192978 (16:5092279 T>C), RS1003265713 (16:5093156 G>A), RS1003853070 (16:5089512 G>A,T)
Disease associations
OMIM: gene MIM:615263 | disease phenotypes: MIM:608540
GenCC curated gene-disease
Mondo (2): ALG1-congenital disorder of glycosylation (MONDO:0012052), focal segmental glomerulosclerosis (MONDO:0100313)
Orphanet (1): ALG1-CDG (Orphanet:79327)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001521_36 | Subcutaneous adipose tissue | 9.000000e-06 |
| GCST002529_1 | Glaucoma | 1.000000e-08 |
| GCST002529_8 | Glaucoma | 4.000000e-08 |
| GCST009391_393 | Metabolite levels | 8.000000e-06 |
| GCST009391_822 | Metabolite levels | 5.000000e-06 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0010437 | triacylglycerol 58:10 measurement |
| EFO:0010398 | sphingomyelin 24:1 measurement |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D005923 | Glomerulosclerosis, Focal Segmental | C12.050.351.968.419.570.363.640; C12.200.777.419.570.363.660; C12.950.419.570.363.640 |
| C535749 | Congenital disorder of glycosylation type 1K (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
26 total (human), top 26 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, increases expression | 2 |
| Tobacco Smoke Pollution | decreases expression, increases expression | 2 |
| Tretinoin | decreases expression | 2 |
| Cadmium Chloride | decreases expression | 2 |
| GSK-J4 | decreases expression | 1 |
| dicrotophos | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases methylation, increases expression | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| cylindrospermopsin | increases expression | 1 |
| perfluoro-n-nonanoic acid | increases expression | 1 |
| abrine | decreases expression | 1 |
| jinfukang | increases expression | 1 |
| NSC 689534 | affects binding, decreases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Copper | affects binding, decreases expression | 1 |
| Dichlorodiphenyl Dichloroethylene | increases expression | 1 |
| Estradiol | increases expression | 1 |
| Silicon Dioxide | increases expression | 1 |
| Smoke | decreases expression | 1 |
| Thiram | decreases expression | 1 |
| Urethane | decreases expression | 1 |
| Valproic Acid | increases expression | 1 |
| Gold Compounds | increases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
Clinical trials (associated diseases)
76 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01129557 | PHASE4 | TERMINATED | Aldosterone Breakthrough During Diovan, Tekturna, and Combination Therapy in Patients With Proteinuric Kidney Disease |
| NCT02399462 | PHASE4 | WITHDRAWN | Acthar for Treatment of Post-transplant FSGS |
| NCT02585804 | PHASE4 | COMPLETED | Treating to Reduce Albuminuria and Normalize Hemodynamic Function in Focal ScLerosis With dApagliflozin Trial Effects |
| NCT02633046 | PHASE4 | COMPLETED | Acthar for Treatment-Resistant or Treatment-Intolerant Proteinuria |
| NCT07219121 | PHASE4 | RECRUITING | Sparsentan in Posttransplant Immunoglobulin A Nephropathy or Focal Segmental Glomerulosclerosis |
| NCT01164098 | PHASE3 | TERMINATED | Rituximab to Prevent Recurrence of Proteinuria |
| NCT02683889 | PHASE3 | COMPLETED | Use of Acthar in Patients With FSGS That Will be Undergoing Renal Transplantation |
| NCT03298698 | PHASE3 | UNKNOWN | Efficacy of Rituximab in Comparison to Continued Corticosteroid Treatment in Idiopathic Nephrotic Syndrome |
| NCT03493685 | PHASE3 | COMPLETED | Study of Sparsentan in Patients With Primary Focal Segmental Glomerulosclerosis (FSGS) |
| NCT05183646 | PHASE3 | RECRUITING | A Study of the Efficacy and Safety of DMX-200 in Patients With FSGS Who Are Receiving an ARB |
| NCT07220083 | PHASE3 | RECRUITING | A Study to Find Out if BI 764198 Helps Adults and Adolescents With a Kidney Condition Called Focal Segmental Glomerulosclerosis (FSGS) |
| NCT00550342 | PHASE2 | WITHDRAWN | Rituximab Treatment of Focal Segmental Glomerulosclerosis |
| NCT00814255 | PHASE2 | COMPLETED | Novel Therapies for Resistant FSGS (FONTII): Phase II Clinical Trial |
| NCT01613118 | PHASE2 | COMPLETED | Randomized, Double-Blind, Safety and Efficacy Study of RE-021 (Sparsentan) in Focal Segmental Glomerulosclerosis |
| NCT02592798 | PHASE2 | COMPLETED | Pilot Study to Evaluate the Safety and Efficacy of Abatacept in Adults and Children 6 Years and Older With Excessive Loss of Protein in the Urine Due to Either Focal Segmental Glomerulosclerosis (FSGS) or Minimal Change Disease (MCD) |
| NCT03366337 | PHASE2 | COMPLETED | A Phase 2 Trial of the Safety and Efficacy of Bardoxolone Methyl in Patients With Rare Chronic Kidney Diseases - PHOENIX |
| NCT03448692 | PHASE2 | TERMINATED | A Study to Evaluate PF-06730512 in Adults With Focal Segmental Glomerulosclerosis (FSGS) |
| NCT03536754 | PHASE2 | COMPLETED | A Study of CCX140-B in Subjects With FSGS |
| NCT03598036 | PHASE2 | TERMINATED | Dose-Exploration Evaluating the Efficacy and Safety of Voclosporin in Subjects With Focal Segmental Glomerulosclerosis |
| NCT03649152 | PHASE2 | COMPLETED | Safety and Effectiveness of Propagermanium in Focal Segmental Glomerulosclerosis Participants Receiving Irbesartan |
| NCT03703908 | PHASE2 | TERMINATED | A Study of CCX140-B in Subjects With Primary FSGS and Nephrotic Syndrome |
| NCT04009668 | PHASE2 | COMPLETED | Tumor Necrosis Factor Inhibition in Focal Segmental Glomerulosclerosis and Treatment Resistant Minimal Change Disease |
| NCT04573920 | PHASE2 | ACTIVE_NOT_RECRUITING | Atrasentan in Patients With Proteinuric Glomerular Diseases |
| NCT05003986 | PHASE2 | RECRUITING | Study of Sparsentan Treatment in Pediatrics With Proteinuric Glomerular Diseases |
| NCT05267262 | PHASE2 | COMPLETED | Study to Evaluate R3R01 in Patients With Alport Syndrome and Patients With Focal Segmental Glomerulosclerosis |
| NCT05441826 | PHASE2 | TERMINATED | Efficacy and Safety of VB119 in Subjects With Minimal Change Disease (MCD) and Focal Segmental Glomerulosclerosis (FSGS) |
| NCT06500702 | PHASE2 | RECRUITING | A Study to Evaluate the Efficacy and Safety of Frexalimab, Brivekimig, or Rilzabrutinib in Participants Aged 16 to 75 Years With Primary Focal Segmental Glomerulosclerosis or Minimal Change Disease |
| NCT06664814 | PHASE2 | RECRUITING | An Open-Label Phase 2 Study of N-Acetyl-D-Mannosamine (ManNAc) in Subjects With Primary Focal Segmental Glomerulosclerosis |
| NCT06983028 | PHASE2 | RECRUITING | Atacicept in Multiple Glomerular Diseases |
| NCT07268638 | PHASE2 | RECRUITING | A Study of Praliciguat in Participants With Focal Segmental Glomerulosclerosis (FSGS) |
| NCT07614477 | PHASE2 | RECRUITING | Evaluate the Efficacy, Safety, Pharmacokinetics, and Pharmacodynamics of EVER001 in Participants With Selected Proteinuric Glomerular Diseases |
| NCT00464321 | PHASE1 | COMPLETED | Safety Study of GC1008 in Patients With Focal Segmental Glomerulosclerosis (FSGS) of Single Doses of GC1008 in Patients With Treatment Resistant Idiopathic FSGS |
| NCT00782561 | PHASE1 | TERMINATED | Safety and Pharmacokinetics of FG-3019 in Adolescents and Adults With Focal Segmental Glomerulosclerosis (FSGS) |
| NCT00816478 | PHASE1 | TERMINATED | Effect of Oral Galactose on Focal Segmental Glomerulosclerosis (FSGS) Permeability Factor |
| NCT00816504 | PHASE1 | WITHDRAWN | Effect of Galactose on Permeblity Factor in Patients With FSGS and CKD Stage 5 |
| NCT02382874 | PHASE1 | UNKNOWN | Allogenic AD-MSC Transplantation in Idiopathic Nephrotic Syndrome (Focal Segmental Glomerulosclerosis) |
| NCT02693366 | PHASE1 | COMPLETED | Stem Cell Therapy for Patients With Focal Segmental Glomerulosclerosis |
| NCT05942625 | PHASE1 | RECRUITING | A First in Human Study to Evaluate Safety, Tolerability, Pharmacology of HS-10390 in Healthy Subjects |
| NCT05955872 | PHASE1 | COMPLETED | A Study Evaluating the Relative Bioavailability and Food Effect of a Tablet Formulation of VX-147 |
| NCT06529796 | PHASE1 | COMPLETED | Evaluation of the Pharmacokinetics and Safety of Inaxaplin in Participants With Mild or Moderate Hepatic Impairment |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): ALG1-congenital disorder of glycosylation, focal segmental glomerulosclerosis, glaucoma