EFCAB13-DT

Summary

EFCAB13-DT (EFCAB13 divergent transcript, HGNC:55338) is a long non-coding RNA gene on chromosome 17q21.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55338
Approved symbol	EFCAB13-DT
Name	EFCAB13 divergent transcript
Location	17q21.32
Locus type	RNA, long non-coding
Status	Approved
Aliases	THCAT158
Ensembl gene	ENSG00000263293
Ensembl biotype	lncRNA
Entrez	102724508
RNAcentral	URS000075A626 — lncRNA, 702 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 33 — 33 lncRNA

ENST00000425159, ENST00000572695, ENST00000575039, ENST00000575291, ENST00000576345, ENST00000619646, ENST00000688561, ENST00000691039, ENST00000701693, ENST00000702305, ENST00000702530, ENST00000783715, ENST00000783716, ENST00000783717, ENST00000783718, ENST00000783719, ENST00000783720, ENST00000783721, ENST00000783722, ENST00000783723, ENST00000783724, ENST00000783725, ENST00000783726, ENST00000783727, ENST00000783728, ENST00000783729, ENST00000783730, ENST00000783731, ENST00000783732, ENST00000783733, ENST00000783734, ENST00000783735, ENST00000783736

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000425159 — 6 exons

Exon	Start	End
ENSE00004028126	47490166	47490295
ENSE00004028127	47456684	47456793
ENSE00004028130	47482992	47483090
ENSE00004028131	47491015	47491192
ENSE00004158031	47450138	47450878
ENSE00004158034	47492394	47492498

Expression profiles

Bgee: expression breadth ubiquitous, 155 present calls, max score 94.15.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2889 / max 11.4203, expressed in 112 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
166601	0.2889	112

Top tissues by expression

253 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.15	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	91.14	gold quality
right lobe of thyroid gland	UBERON:0001119	81.72	gold quality
ascending aorta	UBERON:0001496	80.95	gold quality
left lobe of thyroid gland	UBERON:0001120	80.84	gold quality
thoracic aorta	UBERON:0001515	80.69	gold quality
descending thoracic aorta	UBERON:0002345	79.43	gold quality
right coronary artery	UBERON:0001625	79.39	gold quality
aorta	UBERON:0000947	79.37	gold quality
thyroid gland	UBERON:0002046	79.09	gold quality
right testis	UBERON:0004534	79.04	gold quality
popliteal artery	UBERON:0002250	78.78	gold quality
tibial artery	UBERON:0007610	78.78	gold quality
left testis	UBERON:0004533	78.40	gold quality
muscle layer of sigmoid colon	UBERON:0035805	76.36	gold quality
left coronary artery	UBERON:0001626	76.24	gold quality
testis	UBERON:0000473	75.66	gold quality
coronary artery	UBERON:0001621	74.76	gold quality
monocyte	CL:0000576	74.73	gold quality
sperm	CL:0000019	74.36	silver quality
leukocyte	CL:0000738	74.02	gold quality
lower esophagus muscularis layer	UBERON:0035833	72.62	gold quality
islet of Langerhans	UBERON:0000006	72.61	gold quality
lower esophagus	UBERON:0013473	72.55	gold quality
metanephros cortex	UBERON:0010533	72.38	gold quality
left uterine tube	UBERON:0001303	72.29	gold quality
colonic epithelium	UBERON:0000397	71.43	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	70.61	gold quality
smooth muscle tissue	UBERON:0001135	70.20	gold quality
tibial nerve	UBERON:0001323	68.37	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.94

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.