EFCAB6-DT

Summary

EFCAB6-DT (EFCAB6 divergent transcript, HGNC:55371) is a long non-coding RNA gene on chromosome 22q13.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55371
Approved symbol	EFCAB6-DT
Name	EFCAB6 divergent transcript
Location	22q13.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261251
Ensembl biotype	lncRNA
Entrez	105373058
RNAcentral	URS00026A1D7A — lncRNA, 1401 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000563715, ENST00000564696, ENST00000763788, ENST00000763789, ENST00000763790, ENST00000763791

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000563715 — 2 exons

Exon	Start	End
ENSE00004120250	43816914	43817906
ENSE00004120253	43812415	43812833

Expression profiles

Bgee: expression breadth ubiquitous, 149 present calls, max score 82.85.

Top tissues by expression

237 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.85	gold quality
bone marrow cell	CL:0002092	70.38	silver quality
right uterine tube	UBERON:0001302	65.91	gold quality
right testis	UBERON:0004534	65.50	gold quality
left testis	UBERON:0004533	65.47	gold quality
buccal mucosa cell	CL:0002336	63.96	gold quality
testis	UBERON:0000473	63.62	gold quality
cortical plate	UBERON:0005343	63.32	gold quality
ventricular zone	UBERON:0003053	62.53	gold quality
islet of Langerhans	UBERON:0000006	62.33	gold quality
sperm	CL:0000019	61.80	gold quality
adenohypophysis	UBERON:0002196	61.01	gold quality
ganglionic eminence	UBERON:0004023	60.28	gold quality
pituitary gland	UBERON:0000007	60.18	gold quality
right ovary	UBERON:0002118	57.88	gold quality
right lobe of thyroid gland	UBERON:0001119	57.23	gold quality
left ovary	UBERON:0002119	57.05	gold quality
prefrontal cortex	UBERON:0000451	56.26	gold quality
metanephros cortex	UBERON:0010533	56.18	gold quality
smooth muscle tissue	UBERON:0001135	55.90	gold quality
right coronary artery	UBERON:0001625	55.08	gold quality
body of uterus	UBERON:0009853	54.95	gold quality
thyroid gland	UBERON:0002046	54.92	gold quality
left lobe of thyroid gland	UBERON:0001120	54.90	gold quality
pancreas	UBERON:0001264	54.81	gold quality
gall bladder	UBERON:0002110	54.72	gold quality
ovary	UBERON:0000992	54.49	gold quality
vermiform appendix	UBERON:0001154	54.02	gold quality
stromal cell of endometrium	CL:0002255	53.33	silver quality
lymph node	UBERON:0000029	53.16	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.43

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.