EFHD2-AS1

Summary

EFHD2-AS1 (EFHD2 antisense RNA 1, HGNC:55801) is a long non-coding RNA gene on chromosome 1p36.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55801
Approved symbol	EFHD2-AS1
Name	EFHD2 antisense RNA 1
Location	1p36.21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228140
Ensembl biotype	lncRNA
Entrez	101927441
RNAcentral	URS00026A247C — lncRNA, 1889 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000427824, ENST00000667833, ENST00000774214, ENST00000774215, ENST00000774216, ENST00000774217, ENST00000774218, ENST00000774219, ENST00000774220, ENST00000774221, ENST00000774222, ENST00000774223, ENST00000774224, ENST00000774225

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000427824 — 3 exons

Exon	Start	End
ENSE00001603261	15409070	15409171
ENSE00001611017	15402979	15407907
ENSE00001754918	15409287	15409433

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 77.68.

Top tissues by expression

112 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right testis	UBERON:0004534	77.68	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.15	gold quality
left testis	UBERON:0004533	76.82	gold quality
right uterine tube	UBERON:0001302	76.37	gold quality
testis	UBERON:0000473	75.92	gold quality
granulocyte	CL:0000094	69.29	gold quality
bone marrow cell	CL:0002092	68.13	silver quality
blood	UBERON:0000178	63.57	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	61.81	gold quality
ventricular zone	UBERON:0003053	60.54	gold quality
leukocyte	CL:0000738	58.89	gold quality
bone marrow	UBERON:0002371	58.44	gold quality
fallopian tube	UBERON:0003889	57.57	gold quality
stromal cell of endometrium	CL:0002255	56.91	gold quality
monocyte	CL:0000576	56.78	gold quality
hindlimb stylopod muscle	UBERON:0004252	53.51	silver quality
prefrontal cortex	UBERON:0000451	53.08	gold quality
gall bladder	UBERON:0002110	51.57	gold quality
primary visual cortex	UBERON:0002436	51.45	gold quality
spleen	UBERON:0002106	51.42	gold quality
multicellular organism	UBERON:0000468	51.05	gold quality
lymph node	UBERON:0000029	50.73	silver quality
Brodmann (1909) area 9	UBERON:0013540	49.87	gold quality
frontal cortex	UBERON:0001870	49.71	gold quality
muscle of leg	UBERON:0001383	49.45	gold quality
cortex of kidney	UBERON:0001225	48.88	silver quality
cerebral cortex	UBERON:0000956	48.73	gold quality
adult mammalian kidney	UBERON:0000082	48.66	gold quality
left adrenal gland cortex	UBERON:0035825	48.52	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	48.49	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.38

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.