EFR3B
gene geneOn this page
Also known as FLJ37871
Summary
EFR3B (EFR3 homolog B, HGNC:29155) is a protein-coding gene on chromosome 2p23.3, encoding Protein EFR3 homolog B (Q9Y2G0). Component of a complex required to localize phosphatidylinositol 4-kinase (PI4K) to the plasma membrane.
Involved in phosphatidylinositol phosphate biosynthetic process and protein localization to plasma membrane. Located in actin cytoskeleton; cytosol; and plasma membrane.
Source: NCBI Gene 22979 — RefSeq curated summary.
At a glance
- GWAS associations: 31
- Clinical variants (ClinVar): 80 total — 1 pathogenic
- MANE Select transcript:
NM_014971
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29155 |
| Approved symbol | EFR3B |
| Name | EFR3 homolog B |
| Location | 2p23.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ37871 |
| Ensembl gene | ENSG00000084710 |
| Ensembl biotype | protein_coding |
| OMIM | 616797 |
| Entrez | 22979 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 7 protein_coding
ENST00000264719, ENST00000401432, ENST00000402191, ENST00000403714, ENST00000405108, ENST00000858649, ENST00000858650
RefSeq mRNA: 2 — MANE Select: NM_014971
NM_001319099, NM_014971
CCDS: CCDS46231, CCDS82425
Canonical transcript exons
ENST00000403714 — 23 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000727075 | 25128183 | 25128332 |
| ENSE00000727093 | 25141366 | 25141433 |
| ENSE00000727100 | 25139059 | 25139190 |
| ENSE00000727109 | 25137341 | 25137502 |
| ENSE00000727117 | 25136523 | 25136598 |
| ENSE00000727138 | 25133383 | 25133434 |
| ENSE00000727145 | 25132903 | 25133014 |
| ENSE00000727152 | 25131750 | 25131911 |
| ENSE00000727166 | 25130552 | 25130630 |
| ENSE00000727172 | 25129975 | 25130109 |
| ENSE00000808911 | 25131368 | 25131503 |
| ENSE00000932318 | 25143735 | 25143862 |
| ENSE00000962940 | 25135467 | 25135639 |
| ENSE00001331417 | 25153712 | 25153761 |
| ENSE00001331420 | 25151914 | 25152020 |
| ENSE00001331421 | 25149694 | 25149742 |
| ENSE00001331449 | 25144960 | 25145051 |
| ENSE00001645904 | 25103637 | 25103787 |
| ENSE00002616784 | 25154235 | 25159135 |
| ENSE00003479743 | 25091325 | 25091401 |
| ENSE00003568462 | 25121673 | 25121794 |
| ENSE00003596106 | 25093003 | 25093130 |
| ENSE00003844750 | 25042076 | 25042319 |
Expression profiles
Bgee: expression breadth ubiquitous, 199 present calls, max score 96.35.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 8.5032 / max 217.0966, expressed in 939 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 19206 | 5.2797 | 738 |
| 19209 | 1.2505 | 473 |
| 19210 | 1.0543 | 450 |
| 19207 | 0.6604 | 336 |
| 19208 | 0.1322 | 72 |
| 19205 | 0.1261 | 71 |
Top tissues by expression
282 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pons | UBERON:0000988 | 96.35 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 95.00 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 94.51 | gold quality |
| retina | UBERON:0000966 | 94.49 | gold quality |
| cortical plate | UBERON:0005343 | 91.53 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 91.46 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 91.13 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 90.75 | gold quality |
| entorhinal cortex | UBERON:0002728 | 90.58 | gold quality |
| caudate nucleus | UBERON:0001873 | 90.37 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 90.24 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 90.13 | gold quality |
| putamen | UBERON:0001874 | 90.02 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 89.40 | gold quality |
| ventral tegmental area | UBERON:0002691 | 89.38 | gold quality |
| nucleus accumbens | UBERON:0001882 | 89.25 | gold quality |
| parietal lobe | UBERON:0001872 | 88.99 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 88.76 | gold quality |
| postcentral gyrus | UBERON:0002581 | 88.70 | gold quality |
| medial globus pallidus | UBERON:0002477 | 88.55 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 88.43 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 88.43 | gold quality |
| cerebellar cortex | UBERON:0002129 | 88.18 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 88.15 | gold quality |
| temporal lobe | UBERON:0001871 | 88.02 | gold quality |
| right frontal lobe | UBERON:0002810 | 88.02 | gold quality |
| globus pallidus | UBERON:0001875 | 88.00 | gold quality |
| cerebellum | UBERON:0002037 | 87.63 | gold quality |
| telencephalon | UBERON:0001893 | 87.60 | gold quality |
| Ammon’s horn | UBERON:0001954 | 87.51 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6678 | no | 2.41 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
195 targeting EFR3B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-8075 | 99.97 | 67.20 | 962 |
| HSA-MIR-4267 | 99.96 | 66.53 | 2368 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-22-3P | 99.93 | 68.13 | 917 |
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-6780A-5P | 99.88 | 66.69 | 2776 |
| HSA-MIR-3681-3P | 99.88 | 70.46 | 2254 |
| HSA-MIR-8067 | 99.86 | 69.59 | 2260 |
Literature-anchored findings (GeneRIF, showing 1)
- These data suggest that mammalian Efr3s contribute to the control of the phosphorylation state and, hence, desensitization of AT1a receptors, and could affect responsiveness of G-protein-coupled receptors in higher eukaryotes. (PMID:25380825)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | efr3ba | ENSDARG00000033516 |
| danio_rerio | efr3bb | ENSDARG00000069318 |
| mus_musculus | Efr3b | ENSMUSG00000020658 |
| rattus_norvegicus | Efr3b | ENSRNOG00000012950 |
| drosophila_melanogaster | stmA | FBGN0086784 |
| caenorhabditis_elegans | WBGENE00016311 |
Paralogs (1): EFR3A (ENSG00000132294)
Protein
Protein identifiers
Protein EFR3 homolog B — Q9Y2G0 (reviewed: Q9Y2G0)
All UniProt accessions (3): Q9Y2G0, E7ESK9, H7BXG9
UniProt curated annotations — full annotation on UniProt →
Function. Component of a complex required to localize phosphatidylinositol 4-kinase (PI4K) to the plasma membrane. The complex acts as a regulator of phosphatidylinositol 4-phosphate (PtdIns(4)P) synthesis. In the complex, EFR3B probably acts as the membrane-anchoring component. Also involved in responsiveness to G-protein-coupled receptors; it is however unclear whether this role is direct or indirect.
Subunit / interactions. Component of a phosphatidylinositol 4-kinase (PI4K) complex, composed of PI4KA, EFR3 (EFR3A or EFR3B), TTC7 (TTC7A or TTC7B) and HYCC (HYCC1 or HYCC2).
Subcellular location. Cell membrane. Cytoplasm. Cytosol.
Post-translational modifications. Palmitoylated at its N-terminus, anchoring the protein to the plasma membrane.
Similarity. Belongs to the EFR3 family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9Y2G0-1 | 1 | yes |
| Q9Y2G0-2 | 2 | |
| Q9Y2G0-3 | 3 |
RefSeq proteins (2): NP_001306028, NP_055786* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR011989 | ARM-like | Homologous_superfamily |
| IPR016024 | ARM-type_fold | Homologous_superfamily |
| IPR049152 | EFR3-like_ARM | Repeat |
| IPR051851 | EFR3_Homologs | Family |
Pfam: PF21052
UniProt features (7 total): modified residue 3, splice variant 2, chain 1, mutagenesis site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9Y2G0-F1 | 82.08 | 0.51 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 212, 214, 216
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 5–8 | induces localization to the cytosol. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 98 (showing top):
GOBP_PHOSPHOLIPID_METABOLIC_PROCESS, GOBP_PHOSPHATIDYLINOSITOL_METABOLIC_PROCESS, GOBP_BEHAVIOR, BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_DN, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_PROTEIN_LOCALIZATION_TO_CELL_PERIPHERY, GOBP_PHOSPHOLIPID_BIOSYNTHETIC_PROCESS, GOBP_GLYCEROLIPID_METABOLIC_PROCESS, GOBP_BIOLOGICAL_PROCESS_INVOLVED_IN_INTRASPECIES_INTERACTION_BETWEEN_ORGANISMS, GOBP_GLYCEROLIPID_BIOSYNTHETIC_PROCESS, GOBP_GLYCEROPHOSPHOLIPID_METABOLIC_PROCESS, GOBP_LIPID_METABOLIC_PROCESS, GOBP_LIPID_BIOSYNTHETIC_PROCESS, GOBP_LOCALIZATION_WITHIN_MEMBRANE
GO Biological Process (4): transmission of nerve impulse (GO:0019226), social behavior (GO:0035176), phosphatidylinositol phosphate biosynthetic process (GO:0046854), protein localization to plasma membrane (GO:0072659)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (5): cytosol (GO:0005829), plasma membrane (GO:0005886), actin cytoskeleton (GO:0015629), cytoplasm (GO:0005737), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| action potential | 1 |
| cell communication | 1 |
| chemical synaptic transmission | 1 |
| nervous system process | 1 |
| behavior | 1 |
| biological process involved in intraspecies interaction between organisms | 1 |
| glycerophospholipid biosynthetic process | 1 |
| protein localization to membrane | 1 |
| protein localization to cell periphery | 1 |
| binding | 1 |
| cytoplasm | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cytoskeleton | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
814 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EFR3B | TTC7B | Q86TV6 | 875 |
| EFR3B | TTC7A | Q9ULT0 | 768 |
| EFR3B | PI4KA | P42356 | 713 |
| EFR3B | HYCC1 | Q9BYI3 | 703 |
| EFR3B | TMEM150A | Q86TG1 | 636 |
| EFR3B | HYCC2 | Q8IXS8 | 588 |
| EFR3B | PI4KB | P78405 | 488 |
| EFR3B | KATNAL2 | Q8IYT4 | 433 |
| EFR3B | RHEX | Q6ZWK4 | 431 |
| EFR3B | GRAMD1C | Q8IYS0 | 421 |
| EFR3B | NUGGC | Q68CJ6 | 420 |
| EFR3B | TMEM205 | Q6UW68 | 412 |
| EFR3B | WDR17 | Q8IZU2 | 395 |
| EFR3B | WDR27 | A2RRH5 | 380 |
| EFR3B | MSLNL | Q96KJ4 | 378 |
IntAct
20 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| KCNJ2 | KCNJ18 | psi-mi:“MI:2364”(proximity) | 0.660 |
| RNASE3 | GGPS1 | psi-mi:“MI:0914”(association) | 0.640 |
| SLC16A3 | CASK | psi-mi:“MI:0914”(association) | 0.590 |
| HOXB5 | VPS37C | psi-mi:“MI:0914”(association) | 0.530 |
| TIGD5 | P4HA2 | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM185A | TSPAN6 | psi-mi:“MI:0914”(association) | 0.530 |
| NRAS | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.480 |
| FCAR | EFR3B | psi-mi:“MI:0915”(physical association) | 0.400 |
| PI4KA | EFR3A | psi-mi:“MI:0914”(association) | 0.350 |
| S100A2 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| S100A6 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| CENPM | DNM1L | psi-mi:“MI:0914”(association) | 0.350 |
| MATCAP2 | PRKAR2B | psi-mi:“MI:0914”(association) | 0.350 |
| SLC22A11 | CNOT1 | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM17 | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.270 |
| KRAS | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CTDSPL | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.270 |
| EPHA2 | ARHGAP32 | psi-mi:“MI:2364”(proximity) | 0.270 |
| FGFR1 | BLTP3B | psi-mi:“MI:2364”(proximity) | 0.270 |
| FGFR4 | SH3PXD2B | psi-mi:“MI:2364”(proximity) | 0.270 |
BioGRID (90): EFR3B (Affinity Capture-MS), EFR3B (Affinity Capture-MS), EFR3B (Affinity Capture-MS), EFR3B (Proximity Label-MS), EFR3B (Proximity Label-MS), EFR3B (Affinity Capture-MS), EFR3B (Affinity Capture-MS), EFR3B (Affinity Capture-MS), EFR3B (Affinity Capture-MS), EFR3B (Affinity Capture-MS), EFR3B (Affinity Capture-MS), EFR3B (Affinity Capture-MS), EFR3B (Proximity Label-MS), EFR3B (Proximity Label-MS), EFR3B (Synthetic Lethality)
ESM2 similar proteins: A0A571BF63, A0A5F8MPE6, A1A535, A8QHQ0, B0W730, O23463, O46470, O54829, O64851, O82645, P49758, P49802, P49803, P49809, Q058N0, Q0VA04, Q14D04, Q28IH8, Q4R6I5, Q4R7Z7, Q502W7, Q569B9, Q5PQS3, Q5SPP5, Q5XG48, Q5XIR8, Q641A2, Q6ZQ18, Q7T0S7, Q86VD1, Q8BG67, Q8BMD7, Q8CDN8, Q8H1E8, Q8IGJ0, Q8N957, Q8NCR3, Q8NHS4, Q96L03, Q96LI9
Diamond homologs: Q09263, Q14156, Q5SPP5, Q620W3, Q641A2, Q6ZQ18, Q8BG67, Q8IGJ0, Q9Y2G0, Q6C8F7
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| EFR3B | “up-regulates quantity” | PI4KA | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
80 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 72 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3247406 | NC_000002.11:g.(?24443763)(25536853_?)del | Pathogenic |
SpliceAI
3959 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:25042315:GTACG:G | donor_gain | 1.0000 |
| 2:25092997:CTACA:C | acceptor_loss | 1.0000 |
| 2:25092998:TACAG:T | acceptor_loss | 1.0000 |
| 2:25093000:CAGG:C | acceptor_loss | 1.0000 |
| 2:25093001:AG:A | acceptor_gain | 1.0000 |
| 2:25093001:AGGAT:A | acceptor_gain | 1.0000 |
| 2:25093002:G:A | acceptor_loss | 1.0000 |
| 2:25093002:GG:G | acceptor_gain | 1.0000 |
| 2:25093002:GGAT:G | acceptor_gain | 1.0000 |
| 2:25093002:GGATG:G | acceptor_gain | 1.0000 |
| 2:25093126:TATGG:T | donor_gain | 1.0000 |
| 2:25093127:ATGG:A | donor_gain | 1.0000 |
| 2:25093128:TGG:T | donor_gain | 1.0000 |
| 2:25093129:GG:G | donor_gain | 1.0000 |
| 2:25093129:GGG:G | donor_gain | 1.0000 |
| 2:25093129:GGGTA:G | donor_loss | 1.0000 |
| 2:25093130:GG:G | donor_gain | 1.0000 |
| 2:25093131:G:GG | donor_gain | 1.0000 |
| 2:25093131:GT:G | donor_loss | 1.0000 |
| 2:25093132:T:A | donor_loss | 1.0000 |
| 2:25103636:GGTAC:G | acceptor_gain | 1.0000 |
| 2:25103783:ACTCG:A | donor_gain | 1.0000 |
| 2:25103785:TCG:T | donor_gain | 1.0000 |
| 2:25103785:TCGG:T | donor_loss | 1.0000 |
| 2:25103786:CG:C | donor_gain | 1.0000 |
| 2:25103787:GG:G | donor_gain | 1.0000 |
| 2:25103788:G:GG | donor_gain | 1.0000 |
| 2:25103789:T:G | donor_loss | 1.0000 |
| 2:25121667:T:TA | acceptor_gain | 1.0000 |
| 2:25121669:ATAGT:A | acceptor_loss | 1.0000 |
AlphaMissense
5378 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:25091358:G:T | R14M | 1.000 |
| 2:25091360:T:G | Y15D | 1.000 |
| 2:25091365:A:C | K16N | 1.000 |
| 2:25091365:A:T | K16N | 1.000 |
| 2:25091370:T:C | L18P | 1.000 |
| 2:25091373:T:A | V19D | 1.000 |
| 2:25091382:T:A | I22N | 1.000 |
| 2:25091384:T:C | F23L | 1.000 |
| 2:25091385:T:C | F23S | 1.000 |
| 2:25091386:C:A | F23L | 1.000 |
| 2:25091386:C:G | F23L | 1.000 |
| 2:25093034:T:A | L39Q | 1.000 |
| 2:25093034:T:C | L39P | 1.000 |
| 2:25093034:T:G | L39R | 1.000 |
| 2:25093039:T:A | F41I | 1.000 |
| 2:25093039:T:C | F41L | 1.000 |
| 2:25093040:T:C | F41S | 1.000 |
| 2:25093041:C:A | F41L | 1.000 |
| 2:25093041:C:G | F41L | 1.000 |
| 2:25093042:T:G | Y42D | 1.000 |
| 2:25093045:G:C | A43P | 1.000 |
| 2:25093046:C:A | A43D | 1.000 |
| 2:25093049:T:C | L44P | 1.000 |
| 2:25093063:A:G | K49E | 1.000 |
| 2:25093065:A:C | K49N | 1.000 |
| 2:25093065:A:T | K49N | 1.000 |
| 2:25093067:T:A | L50H | 1.000 |
| 2:25093067:T:C | L50P | 1.000 |
| 2:25093072:C:A | R52S | 1.000 |
| 2:25093073:G:C | R52P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000016955 (2:25104124 G>A), RS1000026291 (2:25093080 C>G,T), RS1000029553 (2:25148754 C>A,G,T), RS1000068924 (2:25127404 T>C), RS1000090370 (2:25134283 G>C), RS1000098010 (2:25150500 T>G), RS1000132354 (2:25119407 G>A), RS1000232932 (2:25130034 C>G,T), RS1000264932 (2:25140590 G>A), RS1000272034 (2:25129829 AGCT>A), RS1000288287 (2:25073956 C>T), RS1000302477 (2:25111560 A>G), RS1000305167 (2:25045142 C>A,G,T), RS1000315333 (2:25058295 C>T), RS1000322774 (2:25043210 A>C)
Disease associations
OMIM: gene MIM:616797 | disease phenotypes: MIM:615879, MIM:617190
GenCC curated gene-disease
Mondo (2): Tatton-Brown-Rahman overgrowth syndrome (MONDO:0014382), Shashi-Pena syndrome (MONDO:0014963)
Orphanet (2): Tatton-Brown-Rahman syndrome (Orphanet:404443), Shashi-Pena syndrome (Orphanet:689408)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
31 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001255_1 | Type 1 diabetes | 4.000000e-09 |
| GCST001935_6 | Body mass index in non-asthmatics | 3.000000e-06 |
| GCST004131_107 | Inflammatory bowel disease | 3.000000e-07 |
| GCST004132_38 | Crohn’s disease | 9.000000e-08 |
| GCST005950_4 | Body mass index x sex x age interaction (4df test) | 5.000000e-26 |
| GCST005951_195 | Body mass index | 3.000000e-24 |
| GCST005952_4 | Body mass index (age>50) | 5.000000e-09 |
| GCST005953_10 | Body mass index (age <50) | 6.000000e-20 |
| GCST007293_13 | Body fat distribution (arm fat ratio) | 2.000000e-39 |
| GCST007293_41 | Body fat distribution (arm fat ratio) | 5.000000e-22 |
| GCST007293_5 | Body fat distribution (arm fat ratio) | 2.000000e-21 |
| GCST007294_128 | Body fat distribution (trunk fat ratio) | 7.000000e-06 |
| GCST007294_94 | Body fat distribution (trunk fat ratio) | 9.000000e-10 |
| GCST008163_518 | Height | 1.000000e-13 |
| GCST008163_594 | Height | 3.000000e-06 |
| GCST011494_92 | Daytime nap | 3.000000e-06 |
| GCST012226_436 | Waist circumference adjusted for body mass index | 4.000000e-09 |
| GCST90020024_855 | A body shape index | 1.000000e-08 |
| GCST90020024_856 | A body shape index | 4.000000e-08 |
| GCST90020024_857 | A body shape index | 2.000000e-10 |
| GCST90020025_1589 | Waist-to-hip ratio adjusted for BMI | 2.000000e-10 |
| GCST90020025_1590 | Waist-to-hip ratio adjusted for BMI | 4.000000e-08 |
| GCST90020027_1598 | Waist-hip index | 6.000000e-12 |
| GCST90020027_1599 | Waist-hip index | 7.000000e-10 |
| GCST90020028_430 | Hip circumference adjusted for BMI | 2.000000e-08 |
| GCST90020028_434 | Hip circumference adjusted for BMI | 3.000000e-08 |
| GCST90020029_656 | Waist circumference adjusted for body mass index | 5.000000e-09 |
| GCST90020029_782 | Waist circumference adjusted for body mass index | 4.000000e-15 |
| GCST90020029_783 | Waist circumference adjusted for body mass index | 4.000000e-12 |
| GCST90020029_784 | Waist circumference adjusted for body mass index | 6.000000e-18 |
EFO canonical traits (8, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
| EFO:0008007 | age at assessment |
| EFO:0008343 | sex interaction measurement |
| EFO:0004341 | body fat distribution |
| EFO:0007828 | daytime rest measurement |
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0008039 | BMI-adjusted hip circumference |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
45 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| (+)-JQ1 compound | increases expression | 6 |
| Benzo(a)pyrene | affects methylation, decreases expression, increases methylation | 5 |
| Valproic Acid | affects cotreatment, decreases expression, increases expression | 4 |
| Estradiol | decreases expression, decreases reaction, affects cotreatment, increases expression | 3 |
| Aflatoxin B1 | decreases expression, increases methylation | 3 |
| sodium arsenite | increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Cadmium Chloride | increases expression | 2 |
| OTX015 | increases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| mivebresib | increases expression | 1 |
| propionaldehyde | increases expression | 1 |
| titanium dioxide | decreases expression | 1 |
| trichostatin A | decreases expression | 1 |
| sulforaphane | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| butyraldehyde | increases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| aflatoxin B2 | affects methylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| perfluoro-n-nonanoic acid | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| perfluorohexanesulfonic acid | increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Decitabine | affects expression | 1 |
Clinical trials (associated diseases)
1 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03303716 | Not specified | RECRUITING | ASXL-Related Disorders Natural History Study |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Shashi-Pena syndrome, Tatton-Brown-Rahman overgrowth syndrome