EFTUD2
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Also known as U5-116KDSnrp116Snu114SNRNP116
Summary
EFTUD2 (elongation factor Tu GTP binding domain containing 2, HGNC:30858) is a protein-coding gene on chromosome 17q21.31, encoding 116 kDa U5 small nuclear ribonucleoprotein component (Q15029). Required for pre-mRNA splicing as component of the spliceosome, including pre-catalytic, catalytic and post-catalytic spliceosomal complexes. It is a common-essential gene (DepMap: required in 99.8% of cancer cell lines) and haploinsufficient (ClinGen: sufficient evidence).
This gene encodes a GTPase which is a component of the spliceosome complex which processes precursor mRNAs to produce mature mRNAs. Mutations in this gene are associated with mandibulofacial dysostosis with microcephaly. Multiple transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 9343 — RefSeq curated summary.
At a glance
- Gene–disease (curated): mandibulofacial dysostosis-microcephaly syndrome (Definitive, ClinGen)
- GWAS associations: 2
- Clinical variants (ClinVar): 956 total — 99 pathogenic, 70 likely-pathogenic
- Phenotypes (HPO): 46
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer driver (intOGen): activating (oncogene-like) across 1 cancer types
- Cancer dependency (DepMap): dependent in 99.8% of screened cell lines (common-essential)
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_004247
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30858 |
| Approved symbol | EFTUD2 |
| Name | elongation factor Tu GTP binding domain containing 2 |
| Location | 17q21.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | U5-116KD, Snrp116, Snu114, SNRNP116 |
| Ensembl gene | ENSG00000108883 |
| Ensembl biotype | protein_coding |
| OMIM | 603892 |
| Entrez | 9343 |
Gene structure
Transcript identifiers
Ensembl transcripts: 42 — 23 protein_coding, 14 retained_intron, 3 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined
ENST00000402521, ENST00000426333, ENST00000585616, ENST00000585794, ENST00000586276, ENST00000586654, ENST00000586875, ENST00000587914, ENST00000587957, ENST00000588340, ENST00000588374, ENST00000589211, ENST00000589475, ENST00000589769, ENST00000589825, ENST00000590105, ENST00000590124, ENST00000590367, ENST00000590977, ENST00000591382, ENST00000591856, ENST00000592408, ENST00000592576, ENST00000592701, ENST00000593072, ENST00000593200, ENST00000880573, ENST00000880574, ENST00000880575, ENST00000880576, ENST00000880577, ENST00000925102, ENST00000925103, ENST00000925104, ENST00000925105, ENST00000969863, ENST00000969864, ENST00000969865, ENST00000969866, ENST00000969867, ENST00000969868, ENST00000969869
RefSeq mRNA: 4 — MANE Select: NM_004247
NM_001142605, NM_001258353, NM_001258354, NM_004247
CCDS: CCDS11489, CCDS45707, CCDS59295
Canonical transcript exons
ENST00000426333 — 28 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000731710 | 44875934 | 44876100 |
| ENSE00000731712 | 44872446 | 44872570 |
| ENSE00000897994 | 44853517 | 44853635 |
| ENSE00000897996 | 44854269 | 44854356 |
| ENSE00001562801 | 44849948 | 44851369 |
| ENSE00002753940 | 44899369 | 44899445 |
| ENSE00003469531 | 44851710 | 44851817 |
| ENSE00003485324 | 44854918 | 44855004 |
| ENSE00003505008 | 44881687 | 44881722 |
| ENSE00003520040 | 44883093 | 44883158 |
| ENSE00003535956 | 44852409 | 44852562 |
| ENSE00003540960 | 44859905 | 44860045 |
| ENSE00003542876 | 44862713 | 44862906 |
| ENSE00003543414 | 44868287 | 44868350 |
| ENSE00003552970 | 44879556 | 44879638 |
| ENSE00003573385 | 44894417 | 44894525 |
| ENSE00003584154 | 44863655 | 44863782 |
| ENSE00003584566 | 44853296 | 44853390 |
| ENSE00003627866 | 44854556 | 44854682 |
| ENSE00003633543 | 44867807 | 44867897 |
| ENSE00003639072 | 44857075 | 44857157 |
| ENSE00003644492 | 44885256 | 44885334 |
| ENSE00003654703 | 44864930 | 44865065 |
| ENSE00003657482 | 44883649 | 44883724 |
| ENSE00003658803 | 44880554 | 44880644 |
| ENSE00003670210 | 44860432 | 44860543 |
| ENSE00003687595 | 44859080 | 44859181 |
| ENSE00003756120 | 44886585 | 44886750 |
Expression profiles
Bgee: expression breadth ubiquitous, 253 present calls, max score 97.07.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 48.0302 / max 1019.3506, expressed in 1823 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 166403 | 47.0114 | 1823 |
| 166404 | 1.0188 | 516 |
Top tissues by expression
256 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| bone marrow cell | CL:0002092 | 97.07 | gold quality |
| tibialis anterior | UBERON:0001385 | 96.82 | gold quality |
| ventricular zone | UBERON:0003053 | 96.81 | gold quality |
| adrenal tissue | UBERON:0018303 | 96.72 | gold quality |
| monocyte | CL:0000576 | 96.68 | gold quality |
| leukocyte | CL:0000738 | 96.61 | gold quality |
| ileal mucosa | UBERON:0000331 | 96.60 | gold quality |
| ganglionic eminence | UBERON:0004023 | 95.83 | gold quality |
| upper arm skin | UBERON:0004263 | 95.67 | gold quality |
| cortical plate | UBERON:0005343 | 95.31 | gold quality |
| gastrocnemius | UBERON:0001388 | 95.27 | gold quality |
| stromal cell of endometrium | CL:0002255 | 95.17 | gold quality |
| muscle of leg | UBERON:0001383 | 95.16 | gold quality |
| islet of Langerhans | UBERON:0000006 | 95.03 | gold quality |
| calcaneal tendon | UBERON:0003701 | 95.02 | gold quality |
| vermiform appendix | UBERON:0001154 | 94.99 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 94.95 | silver quality |
| sural nerve | UBERON:0015488 | 94.87 | gold quality |
| granulocyte | CL:0000094 | 94.77 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 94.44 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 94.43 | gold quality |
| rectum | UBERON:0001052 | 94.34 | gold quality |
| skin of leg | UBERON:0001511 | 94.17 | gold quality |
| deltoid | UBERON:0001476 | 94.14 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 94.01 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 93.87 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 93.67 | gold quality |
| colonic epithelium | UBERON:0000397 | 93.62 | gold quality |
| adrenal gland | UBERON:0002369 | 93.53 | gold quality |
| zone of skin | UBERON:0000014 | 93.50 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.33 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
54 targeting EFTUD2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-498-3P | 99.91 | 71.27 | 1114 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-26A-5P | 99.78 | 73.52 | 2303 |
| HSA-MIR-26B-5P | 99.78 | 73.51 | 2305 |
| HSA-MIR-4306 | 99.72 | 70.50 | 3630 |
| HSA-MIR-4465 | 99.71 | 72.56 | 2096 |
| HSA-MIR-3175 | 99.65 | 66.30 | 2031 |
| HSA-MIR-3177-5P | 99.65 | 70.38 | 1174 |
| HSA-MIR-4328 | 99.57 | 71.06 | 4094 |
| HSA-MIR-6716-5P | 99.56 | 68.62 | 1244 |
| HSA-MIR-186-3P | 99.51 | 66.24 | 1685 |
| HSA-MIR-4696 | 99.48 | 67.48 | 1040 |
| HSA-MIR-1275 | 99.47 | 67.90 | 2749 |
| HSA-MIR-3915 | 99.45 | 68.49 | 1905 |
| HSA-MIR-185-5P | 99.35 | 68.60 | 2497 |
| HSA-MIR-4644 | 99.35 | 69.12 | 2514 |
| HSA-MIR-4685-5P | 99.25 | 65.99 | 1563 |
| HSA-MIR-6837-5P | 99.25 | 65.47 | 1632 |
| HSA-MIR-544B | 99.18 | 67.41 | 1632 |
| HSA-MIR-892C-5P | 99.16 | 70.56 | 2116 |
| HSA-MIR-3127-3P | 98.94 | 67.34 | 1055 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
DepMap (CRISPR cell-line fitness): dependent in 99.8% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 23)
- Validation studies of eight additional individuals with MFDM demonstrated causative EFTUD2 mutations in all affected individuals tested. (PMID:22305528)
- EFTUD2 haploinsufficiency leads to syndromic oesophageal atresia. (PMID:23188108)
- Novel mutations in EFTUD2 were discovered in 3 patients. These mutations expand the clinical features in patients with EFTUD2 mutations and demonstrate an overlap with oculo-auriculo-vertebral spectrum. (PMID:23239648)
- the phenotype in patients with EFTUD2 mutations is much broader than previously anticipated; in addition to AFD type Guion-Almeida and syndromic esophageal atresia, oto-facial syndrome also belongs to the EFTUD2 mutation spectrum (PMID:23879989)
- A de nove deletion mutation at 17q21.31, encompassing the EFTUD2 gene, is associated with congenital mandibulofacial dysostosis with microcephaly. (PMID:24266672)
- Study describes loss-of-function mutations in EFTUD2 gene in patients with different clinical manifestations of Mandibulofacial dysostosis, Guion-Almeida type syndrome. (PMID:24470203)
- Three different mutations in EFTUD2 gene were found in patients with mandibulofacial dysostosis type Guion-Almeida syndrome (PMID:25387991)
- Results show that SNW1 directly associates with EFTUD2 and SNRNP200 and that disruption of SNW1 association with these proteins promotes the apoptosis of breast cancer cells. (PMID:25450007)
- Novel heterozygous mutations in EFTUD2, detected by exome sequencing, in mandibulofacial dysostosis with Microcephaly syndrome. (PMID:25735261)
- We report a clinical and extensive molecular study, including TCOF1, POLR1D, POLR1C, and EFTUD2 genes, in a series of 146 patients with TCS. (PMID:25790162)
- These data demonstrate that EFTUD2 restricts Hepatitis C Virus infection mainly through an RIG-I/MDA5-mediated, JAK-STAT-independent pathway, thereby revealing the participation of EFTUD2 as a novel innate immune regulator. (PMID:25878102)
- An update on mandibulofacial dysostosis with microcephaly and EFTUD2 mutations has been presented. (Review) (PMID:26507355)
- we report two individuals of Asian ancestry with Mandibulofacial dysostosis type Guion-Almeida (MFDGA), each harboring a novel, pathogenic splice site variant in EFTUD2 (PMID:29381487)
- report 2 cases of mandibulofacial dysostosis with microcephaly (MFDM) with different and novel de novo mutations in the elongation factor Tu GTP binding domain containing 2 gene (PMID:30343593)
- EFTUD2 missense variants disrupt protein function and splicing in mandibulofacial dysostosis Guion-Almeida type. (PMID:32333448)
- Spliceosome protein EFTUD2 is upregulated in the trophoblast of spontaneous miscarriage and hydatidiform mole. (PMID:32447180)
- A novel EFTUD2 mutation identified an adult male with mandibulofacial dysostosis Guion-Almeida type. (PMID:32541334)
- EFTUD2 maintains the survival of tumor cells and promotes hepatocellular carcinoma progression via the activation of STAT3. (PMID:33024090)
- Mandibulofacial dysostosis with microcephaly: An expansion of the phenotype via parental survey. (PMID:33247512)
- Association of Elongation Factor Tu GTP-binding Domain-containing 2 Gene (EFTUD2) Polymorphism with the Risk of Hepatitis B Virus Infection. (PMID:34436958)
- The Pregnancy Zone Protein (PZP) is significantly downregulated in the placenta of preeclampsia and HELLP syndrome patients. (PMID:35843132)
- The Spliceosome Factor EFTUD2 Promotes IFN Anti-HBV Effect through mRNA Splicing. (PMID:37396299)
- Identification of novel mutations in EYA3 and EFTUD2 in a family with craniofacial microsomia: evidence of digenic inheritance. (PMID:37507637)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | eftud2 | ENSDARG00000012261 |
| mus_musculus | Eftud2 | ENSMUSG00000020929 |
| rattus_norvegicus | Eftud2 | ENSRNOG00000002818 |
| drosophila_melanogaster | CG4849 | FBGN0039566 |
| caenorhabditis_elegans | WBGENE00001166 |
Paralogs (18): MTIF2 (ENSG00000085760), GTPBP1 (ENSG00000100226), EEF1A2 (ENSG00000101210), GSPT1 (ENSG00000103342), HBS1L (ENSG00000112339), EIF2S3 (ENSG00000130741), EEFSEC (ENSG00000132394), EFL1 (ENSG00000140598), GUF1 (ENSG00000151806), EEF1A1 (ENSG00000156508), EIF5B (ENSG00000158417), GFM2 (ENSG00000164347), EEF2 (ENSG00000167658), GFM1 (ENSG00000168827), GTPBP2 (ENSG00000172432), TUFM (ENSG00000178952), EIF2S3B (ENSG00000180574), GSPT2 (ENSG00000189369)
Protein
Protein identifiers
116 kDa U5 small nuclear ribonucleoprotein component — Q15029 (reviewed: Q15029)
Alternative names: Elongation factor Tu GTP-binding domain-containing protein 2, SNU114 homolog, U5 snRNP-specific protein, 116 kDa
All UniProt accessions (7): Q15029, K7EIT3, K7EIV5, K7EJ74, K7EP67, K7EQ26, K7ERJ5
UniProt curated annotations — full annotation on UniProt →
Function. Required for pre-mRNA splicing as component of the spliceosome, including pre-catalytic, catalytic and post-catalytic spliceosomal complexes. Component of the U5 snRNP and the U4/U6-U5 tri-snRNP complex, a building block of the spliceosome. As a component of the minor spliceosome, involved in the splicing of U12-type introns in pre-mRNAs.
Subunit / interactions. Component of the U5 snRNP and the U4/U6-U5 tri-snRNP complex, a building block of the spliceosome. The U4/U6-U5 tri-snRNP complex is composed of the U4, U6 and U5 snRNAs and at least PRPF3, PRPF4, PRPF6, PRPF8, PRPF31, SNRNP200, TXNL4A, SNRNP40, DDX23, CD2BP2, PPIH, SNU13, EFTUD2, SART1 and USP39. Component of the pre-catalytic, catalytic and post-catalytic spliceosome complexes. Component of the minor spliceosome, which splices U12-type introns. Within this complex, interacts with CRIPT. Interacts with ERBB4 and PRPF8. Interacts with PIH1D1. Interacts with RPAP3 and URI1 in a ZNHIT2-dependent manner. Interacts with NRDE2. Interacts with FAM50A. Interacts with UBL5.
Subcellular location. Nucleus.
Disease relevance. Mandibulofacial dysostosis with microcephaly (MFDM) [MIM:610536] A rare syndrome characterized by progressive microcephaly, midface and malar hypoplasia, micrognathia, microtia, dysplastic ears, preauricular skin tags, significant developmental delay, and speech delay. Many patients have major sequelae, including choanal atresia that results in respiratory difficulties, conductive hearing loss, and cleft palate. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q15029-1 | 1 | yes |
| Q15029-2 | 2 | |
| Q15029-3 | 3 |
RefSeq proteins (4): NP_001136077, NP_001245282, NP_001245283, NP_004238* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000640 | EFG_V-like | Domain |
| IPR000795 | T_Tr_GTP-bd_dom | Domain |
| IPR004161 | EFTu-like_2 | Domain |
| IPR005225 | Small_GTP-bd | Domain |
| IPR005517 | Transl_elong_EFG/EF2_IV | Domain |
| IPR009000 | Transl_B-barrel_sf | Homologous_superfamily |
| IPR014721 | Ribsml_uS5_D2-typ_fold_subgr | Homologous_superfamily |
| IPR020568 | Ribosomal_Su5_D2-typ_SF | Homologous_superfamily |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR031950 | EFTUD2_N | Domain |
| IPR035647 | EFG_III/V | Homologous_superfamily |
| IPR035655 | U5-116kDa_C | Domain |
| IPR041095 | EFG_II | Domain |
| IPR044121 | Snu114_GTP-bd | Domain |
Pfam: PF00009, PF00679, PF03144, PF03764, PF14492, PF16004
UniProt features (125 total): strand 54, helix 32, turn 17, sequence variant 4, modified residue 3, sequence conflict 3, binding site 3, cross-link 2, splice variant 2, compositionally biased region 2, chain 1, domain 1, region of interest 1
Structure
Experimental structures (PDB)
68 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8H6L | ELECTRON MICROSCOPY | 2.6 |
| 8H6K | ELECTRON MICROSCOPY | 2.7 |
| 8C6J | ELECTRON MICROSCOPY | 2.8 |
| 6ID1 | ELECTRON MICROSCOPY | 2.86 |
| 7DVQ | ELECTRON MICROSCOPY | 2.89 |
| 6ID0 | ELECTRON MICROSCOPY | 2.9 |
| 6QW6 | ELECTRON MICROSCOPY | 2.92 |
| 6ICZ | ELECTRON MICROSCOPY | 3 |
| 8I0R | ELECTRON MICROSCOPY | 3 |
| 8I0T | ELECTRON MICROSCOPY | 3 |
| 8I0V | ELECTRON MICROSCOPY | 3 |
| 7QTT | ELECTRON MICROSCOPY | 3.1 |
| 8Q7N | ELECTRON MICROSCOPY | 3.1 |
| 8Q91 | ELECTRON MICROSCOPY | 3.1 |
| 8QOZ | ELECTRON MICROSCOPY | 3.1 |
| 8QPE | ELECTRON MICROSCOPY | 3.1 |
| 9R3D | ELECTRON MICROSCOPY | 3.12 |
| 8H6E | ELECTRON MICROSCOPY | 3.2 |
| 8Q7Q | ELECTRON MICROSCOPY | 3.2 |
| 8RC0 | ELECTRON MICROSCOPY | 3.2 |
| 8H6J | ELECTRON MICROSCOPY | 3.25 |
| 6QX9 | ELECTRON MICROSCOPY | 3.28 |
| 6QDV | ELECTRON MICROSCOPY | 3.3 |
| 8I0U | ELECTRON MICROSCOPY | 3.3 |
| 9FMD | ELECTRON MICROSCOPY | 3.3 |
| 8Y6O | ELECTRON MICROSCOPY | 3.38 |
| 6FF4 | ELECTRON MICROSCOPY | 3.4 |
| 6ZYM | ELECTRON MICROSCOPY | 3.4 |
| 8I0P | ELECTRON MICROSCOPY | 3.4 |
| 8I0W | ELECTRON MICROSCOPY | 3.4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q15029-F1 | 89.94 | 0.76 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (3): 136–143; 204–208; 258–261
Post-translational modifications (5): 86, 64, 64, 1, 19
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-72163 | mRNA Splicing - Major Pathway |
| R-HSA-72165 | mRNA Splicing - Minor Pathway |
| R-HSA-9918481 | Dengue Virus-Host Interactions |
MSigDB gene sets: 293 (showing top):
GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_RESPONSE_TO_COCAINE, GOBP_NEGATIVE_REGULATION_OF_RNA_SPLICING, MODULE_150, USF_C, MODULE_388, GOBP_RESPONSE_TO_ALKALOID, GOBP_SPLICEOSOMAL_TRI_SNRNP_COMPLEX_ASSEMBLY, MODULE_195, MARTINEZ_RB1_TARGETS_DN, REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA, GOBP_PROTEIN_RNA_COMPLEX_ORGANIZATION, GOBP_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND, GOBP_RNA_SPLICING, REACTOME_MRNA_SPLICING
GO Biological Process (5): mRNA splicing, via spliceosome (GO:0000398), response to cocaine (GO:0042220), cellular response to xenobiotic stimulus (GO:0071466), mRNA processing (GO:0006397), RNA splicing (GO:0008380)
GO Molecular Function (6): RNA binding (GO:0003723), GTPase activity (GO:0003924), GTP binding (GO:0005525), U5 snRNA binding (GO:0030623), nucleotide binding (GO:0000166), protein binding (GO:0005515)
GO Cellular Component (11): nucleus (GO:0005634), nucleoplasm (GO:0005654), spliceosomal complex (GO:0005681), cytosol (GO:0005829), Cajal body (GO:0015030), membrane (GO:0016020), nuclear speck (GO:0016607), U4/U6 x U5 tri-snRNP complex (GO:0046540), U2-type precatalytic spliceosome (GO:0071005), U2-type catalytic step 2 spliceosome (GO:0071007), catalytic step 2 spliceosome (GO:0071013)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| mRNA Splicing | 2 |
| Dengue Virus Infection | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| RNA processing | 2 |
| nuclear ribonucleoprotein granule | 2 |
| U5 snRNP | 2 |
| U2-type spliceosomal complex | 2 |
| U2 snRNP | 2 |
| RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | 1 |
| mRNA processing | 1 |
| response to alkaloid | 1 |
| response to oxygen-containing compound | 1 |
| response to xenobiotic stimulus | 1 |
| cellular response to chemical stimulus | 1 |
| mRNA metabolic process | 1 |
| nucleic acid binding | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| guanyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| snRNA binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| nuclear protein-containing complex | 1 |
| ribonucleoprotein complex | 1 |
| cytoplasm | 1 |
| U4/U6 snRNP | 1 |
| spliceosomal tri-snRNP complex | 1 |
| U1 snRNP | 1 |
| U4/U6 x U5 tri-snRNP complex | 1 |
| precatalytic spliceosome | 1 |
| U6 snRNP | 1 |
| catalytic step 2 spliceosome | 1 |
| Prp19 complex | 1 |
| spliceosomal complex | 1 |
| catalytic complex | 1 |
Protein interactions and networks
STRING
6375 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EFTUD2 | SNRNP200 | O75643 | 982 |
| EFTUD2 | PRPF8 | Q6P2Q9 | 970 |
| EFTUD2 | SRRM2 | Q9UQ35 | 916 |
| EFTUD2 | AAR2 | Q9Y312 | 916 |
| EFTUD2 | PRPF6 | O94906 | 847 |
| EFTUD2 | SF3B3 | Q15393 | 844 |
| EFTUD2 | PRPF31 | Q8WWY3 | 844 |
| EFTUD2 | SNRNP40 | Q96DI7 | 834 |
| EFTUD2 | PRPF3 | O43395 | 822 |
| EFTUD2 | SF3B1 | O75533 | 821 |
| EFTUD2 | SF3A3 | Q12874 | 810 |
| EFTUD2 | SF3B4 | Q15427 | 803 |
| EFTUD2 | CDC5L | Q99459 | 783 |
| EFTUD2 | TXNL4A | P83876 | 782 |
| EFTUD2 | SF3B2 | Q13435 | 778 |
| EFTUD2 | SNU13 | P55769 | 778 |
IntAct
251 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| EFTUD2 | PRPF8 | psi-mi:“MI:0915”(physical association) | 0.900 |
| PRPF8 | EFTUD2 | psi-mi:“MI:0915”(physical association) | 0.900 |
| EFTUD2 | PRPF6 | psi-mi:“MI:0915”(physical association) | 0.880 |
| EFTUD2 | SNRNP40 | psi-mi:“MI:0915”(physical association) | 0.810 |
| EFTUD2 | SNRNP200 | psi-mi:“MI:0915”(physical association) | 0.790 |
| SNRNP200 | EFTUD2 | psi-mi:“MI:0915”(physical association) | 0.790 |
| PRPF6 | SNRNP200 | psi-mi:“MI:0914”(association) | 0.770 |
| SNRPE | GEMIN2 | psi-mi:“MI:0914”(association) | 0.770 |
| PRPF8 | SNRNP200 | psi-mi:“MI:0915”(physical association) | 0.740 |
| PRPF3 | PRPF4 | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| SNRPD2 | GEMIN2 | psi-mi:“MI:0914”(association) | 0.710 |
| SNRPG | GEMIN2 | psi-mi:“MI:0914”(association) | 0.710 |
| MYC | EFTUD2 | psi-mi:“MI:0915”(physical association) | 0.680 |
| EFTUD2 | MYC | psi-mi:“MI:0915”(physical association) | 0.680 |
| UBL5 | SART1 | psi-mi:“MI:0914”(association) | 0.670 |
| HSP90AA1 | CHUK | psi-mi:“MI:0914”(association) | 0.670 |
| SNRPB | PRMT5 | psi-mi:“MI:0914”(association) | 0.670 |
| HSF1 | KPNA3 | psi-mi:“MI:0914”(association) | 0.640 |
| NCBP2 | KPNA3 | psi-mi:“MI:0914”(association) | 0.640 |
| NCBP1 | KPNA3 | psi-mi:“MI:0914”(association) | 0.640 |
| PRPF8 | PRPF4 | psi-mi:“MI:0914”(association) | 0.640 |
| SF3B1 | SAP18 | psi-mi:“MI:0914”(association) | 0.640 |
BioGRID (1845): EFTUD2 (Affinity Capture-MS), PRPF8 (Two-hybrid), EFTUD2 (Affinity Capture-RNA), EFTUD2 (Affinity Capture-MS), EFTUD2 (Affinity Capture-MS), EFTUD2 (Affinity Capture-MS), EFTUD2 (Affinity Capture-MS), EFTUD2 (Affinity Capture-MS), EFTUD2 (Affinity Capture-MS), EFTUD2 (Affinity Capture-MS), EFTUD2 (Affinity Capture-MS), EFTUD2 (Affinity Capture-MS), EFTUD2 (Affinity Capture-MS), EFTUD2 (Affinity Capture-MS), EFTUD2 (Affinity Capture-MS)
ESM2 similar proteins: A1JJ92, A1RH82, A3MYA2, A3QGT8, A4FUD3, A4TQJ9, A4W691, A5F904, A6QLJ3, A7FMI1, A7MUW8, A8FYR3, A8H733, A9R055, B0BRI9, B0TQ95, B0USE8, B1JL43, B1KRQ3, B2K3I2, B3GZM0, B4EWB0, B4RU35, B6ENF7, C3LSR4, C5BHI4, C6DJU6, F4JWP9, O08810, P43928, Q0I2G9, Q12QG7, Q15029, Q1C156, Q1CMZ7, Q2S9X0, Q3IHI5, Q487B0, Q5F3X4, Q5QXU1
Diamond homologs: A0B7D5, A0RW30, A0SXL6, A1RVX2, A3CXM8, A3DMV6, A3MSN3, A4FUD3, A4WMR8, A4YCV9, A5DI11, A5ULM6, A7I4X4, A8ACA7, B0R8C8, B1L7Q0, B1YE08, B6YVG5, B8D6B2, B8GJK8, C3MQ53, C3MVH1, C3N5S0, C3NED6, C3NHB6, C4KHE9, C4YJQ8, C5A6N7, C6A4M0, C7NYH7, D3E3N9, F4JWP9, O08810, O14460, O23755, O27131, O28385, O59521, O74945, O93632
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| EFTUD2 | “form complex” | “U4/U6.U5 snRNP complex” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 208 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Metabolism of non-coding RNA | 8 | 33.4× | 3e-09 |
| mRNA Splicing - Minor Pathway | 15 | 22.1× | 8e-15 |
| mRNA Splicing | 28 | 20.2× | 7e-27 |
| mRNA Splicing - Major Pathway | 49 | 17.6× | 7e-46 |
| Abortive elongation of HIV-1 transcript in the absence of Tat | 5 | 16.3× | 3e-04 |
| Processing of Capped Intron-Containing Pre-mRNA | 30 | 16.2× | 5e-26 |
| RNA Polymerase II Transcription Termination | 10 | 14.4× | 9e-08 |
| mRNA Polyadenylation | 23 | 13.3× | 1e-17 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| spliceosomal tri-snRNP complex assembly | 7 | 42.3× | 2e-08 |
| RNA splicing, via transesterification reactions | 11 | 36.9× | 1e-12 |
| spliceosomal snRNP assembly | 11 | 34.4× | 2e-12 |
| U2-type prespliceosome assembly | 10 | 33.6× | 4e-11 |
| spliceosomal complex assembly | 10 | 32.4× | 5e-11 |
| mRNA cis splicing, via spliceosome | 5 | 26.6× | 1e-04 |
| regulation of mRNA splicing, via spliceosome | 5 | 23.8× | 2e-04 |
| mRNA splicing, via spliceosome | 45 | 22.2× | 2e-45 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: activating (oncogene-like) across 1 cancer types — PCM.
Clinical variants and AI predictions
ClinVar
956 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 99 |
| Likely pathogenic | 70 |
| Uncertain significance | 294 |
| Likely benign | 281 |
| Benign | 98 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1029804 | NM_004247.4(EFTUD2):c.1331del (p.Gly444fs) | Pathogenic |
| 1029805 | NM_004247.4(EFTUD2):c.378del (p.Glu127fs) | Pathogenic |
| 1175913 | NM_004247.4(EFTUD2):c.1150-1G>T | Pathogenic |
| 1364366 | NM_004247.4(EFTUD2):c.702+1del | Pathogenic |
| 1409617 | NM_004247.4(EFTUD2):c.1920_1923dup (p.His642fs) | Pathogenic |
| 1431432 | NM_004247.4(EFTUD2):c.158del (p.Pro53fs) | Pathogenic |
| 1433437 | NM_004247.4(EFTUD2):c.1402dup (p.Cys468fs) | Pathogenic |
| 1454611 | NM_004247.4(EFTUD2):c.2562-2del | Pathogenic |
| 1526579 | GRCh37/hg19 17q21.31(chr17:42953220-42972444) | Pathogenic |
| 1679931 | NM_004247.4(EFTUD2):c.3G>T (p.Met1Ile) | Pathogenic |
| 1693035 | NM_004247.4(EFTUD2):c.1127C>G (p.Pro376Arg) | Pathogenic |
| 1698725 | NM_004247.4(EFTUD2):c.1719+1G>A | Pathogenic |
| 1702966 | NM_004247.4(EFTUD2):c.2199G>A (p.Trp733Ter) | Pathogenic |
| 1703337 | NM_004247.4(EFTUD2):c.1705C>T (p.Arg569Ter) | Pathogenic |
| 1706532 | NM_004247.4(EFTUD2):c.423del (p.Lys142fs) | Pathogenic |
| 1804926 | NM_004247.4(EFTUD2):c.509_519del (p.Ile170fs) | Pathogenic |
| 2002395 | NM_004247.4(EFTUD2):c.1888del (p.Leu630fs) | Pathogenic |
| 203386 | NM_004247.4(EFTUD2):c.764dup (p.Cys256fs) | Pathogenic |
| 2100276 | NM_004247.4(EFTUD2):c.1513C>T (p.Gln505Ter) | Pathogenic |
| 210914 | NM_004247.4(EFTUD2):c.1149+1G>C | Pathogenic |
| 210915 | NM_004247.4(EFTUD2):c.1297_1298del (p.Met433fs) | Pathogenic |
| 2446031 | NM_004247.4(EFTUD2):c.1012G>T (p.Glu338Ter) | Pathogenic |
| 2498220 | NM_004247.4(EFTUD2):c.593dup (p.Tyr198Ter) | Pathogenic |
| 2506543 | GRCh37/hg19 17q21.31(chr17:42929777-42937911) | Pathogenic |
| 2581074 | NM_004247.4(EFTUD2):c.2643_2649del (p.Phe881fs) | Pathogenic |
| 265116 | NM_004247.4(EFTUD2):c.2698_2701del (p.Val900fs) | Pathogenic |
| 265311 | NM_004247.4(EFTUD2):c.1860+2del | Pathogenic |
| 2662935 | NM_004247.4(EFTUD2):c.2330G>T (p.Gly777Val) | Pathogenic |
| 2687899 | NM_004247.4(EFTUD2):c.1421del (p.Leu474fs) | Pathogenic |
| 2710262 | NM_004247.4(EFTUD2):c.671G>T (p.Gly224Val) | Pathogenic |
SpliceAI
3677 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:44851366:GGCC:G | acceptor_gain | 1.0000 |
| 17:44851368:CC:C | acceptor_gain | 1.0000 |
| 17:44851369:CC:C | acceptor_gain | 1.0000 |
| 17:44851370:C:CC | acceptor_gain | 1.0000 |
| 17:44851370:CTG:C | acceptor_loss | 1.0000 |
| 17:44851371:T:A | acceptor_loss | 1.0000 |
| 17:44851705:CATA:C | donor_loss | 1.0000 |
| 17:44851706:ATACC:A | donor_loss | 1.0000 |
| 17:44851707:TAC:T | donor_loss | 1.0000 |
| 17:44851708:ACCTT:A | donor_gain | 1.0000 |
| 17:44851709:C:G | donor_loss | 1.0000 |
| 17:44851709:CCTTC:C | donor_gain | 1.0000 |
| 17:44851712:T:A | donor_gain | 1.0000 |
| 17:44851813:ACAAT:A | acceptor_gain | 1.0000 |
| 17:44851814:CAAT:C | acceptor_gain | 1.0000 |
| 17:44851814:CAATC:C | acceptor_gain | 1.0000 |
| 17:44851815:AAT:A | acceptor_gain | 1.0000 |
| 17:44851816:AT:A | acceptor_gain | 1.0000 |
| 17:44851817:TCTAA:T | acceptor_loss | 1.0000 |
| 17:44851818:C:CC | acceptor_gain | 1.0000 |
| 17:44851818:CTAAA:C | acceptor_loss | 1.0000 |
| 17:44852403:TCTCA:T | donor_loss | 1.0000 |
| 17:44852404:CTCA:C | donor_loss | 1.0000 |
| 17:44852405:TCA:T | donor_loss | 1.0000 |
| 17:44852406:CA:C | donor_loss | 1.0000 |
| 17:44852408:C:CT | donor_loss | 1.0000 |
| 17:44852558:GCCCC:G | acceptor_gain | 1.0000 |
| 17:44852559:CCCC:C | acceptor_gain | 1.0000 |
| 17:44852559:CCCCC:C | acceptor_gain | 1.0000 |
| 17:44852560:CCC:C | acceptor_gain | 1.0000 |
AlphaMissense
6450 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:44851365:A:G | L943P | 1.000 |
| 17:44851369:C:G | G942R | 1.000 |
| 17:44851713:C:A | R940S | 1.000 |
| 17:44851713:C:G | R940S | 1.000 |
| 17:44851714:C:A | R940M | 1.000 |
| 17:44851714:C:G | R940T | 1.000 |
| 17:44851717:C:G | R939P | 1.000 |
| 17:44851720:C:G | R938P | 1.000 |
| 17:44851721:G:T | R938S | 1.000 |
| 17:44851744:G:T | A930D | 1.000 |
| 17:44852461:C:G | R888P | 1.000 |
| 17:44852464:A:G | L887P | 1.000 |
| 17:44852530:C:T | G865D | 1.000 |
| 17:44852560:C:T | G855E | 1.000 |
| 17:44852561:C:A | G855W | 1.000 |
| 17:44852561:C:G | G855R | 1.000 |
| 17:44852561:C:T | G855R | 1.000 |
| 17:44853296:C:A | R854M | 1.000 |
| 17:44853296:C:G | R854T | 1.000 |
| 17:44853389:G:T | A823D | 1.000 |
| 17:44853390:C:G | A823P | 1.000 |
| 17:44853521:A:G | L821P | 1.000 |
| 17:44853545:C:A | R813M | 1.000 |
| 17:44853545:C:G | R813T | 1.000 |
| 17:44854280:A:G | L779P | 1.000 |
| 17:44854286:C:T | G777D | 1.000 |
| 17:44854287:C:G | G777R | 1.000 |
| 17:44854310:C:T | G769D | 1.000 |
| 17:44854311:C:G | G769R | 1.000 |
| 17:44854566:A:T | L750Q | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000027322 (17:44882631 T>C), RS1000188945 (17:44888803 T>A,C), RS1000256102 (17:44877642 C>T), RS1000281618 (17:44871261 G>A), RS1000337987 (17:44854414 G>A), RS1000348735 (17:44894307 T>C,G), RS1000382466 (17:44890162 C>G), RS1000398052 (17:44871498 C>A,G), RS1000423862 (17:44894697 A>T), RS1000495182 (17:44865243 C>T), RS1000545149 (17:44859653 A>ACG), RS1000594635 (17:44858830 C>T), RS1000627959 (17:44877391 G>A), RS1000806640 (17:44894317 C>G), RS1000829265 (17:44852618 A>C)
Disease associations
OMIM: gene MIM:603892 | disease phenotypes: MIM:610536, MIM:610805, MIM:189960
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| mandibulofacial dysostosis-microcephaly syndrome | Definitive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| mandibulofacial dysostosis-microcephaly syndrome | Definitive | AD |
Mondo (7): mandibulofacial dysostosis-microcephaly syndrome (MONDO:0012516), mandibulofacial dysostosis (MONDO:0015483), cleft lip/palate (MONDO:0016044), congenital anomaly of kidney and urinary tract (MONDO:0019719), esophageal atresia (MONDO:0001044), neurodevelopmental disorder (MONDO:0700092), esophageal atresia/tracheoesophageal fistula (MONDO:0008586)
Orphanet (6): Mandibulofacial dysostosis-microcephaly syndrome (Orphanet:79113), Genetic syndromic Pierre Robin syndrome (Orphanet:363294), Mandibulofacial dysostosis (Orphanet:155899), Cleft lip/palate (Orphanet:199306), Renal or urinary tract malformation (Orphanet:93545), Esophageal atresia (Orphanet:1199)
HPO phenotypes
46 total (30 of 46 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000175 | Cleft palate |
| HP:0000191 | Accessory oral frenulum |
| HP:0000243 | Trigonocephaly |
| HP:0000252 | Microcephaly |
| HP:0000253 | Progressive microcephaly |
| HP:0000272 | Malar flattening |
| HP:0000286 | Epicanthus |
| HP:0000327 | Hypoplasia of the maxilla |
| HP:0000347 | Micrognathia |
| HP:0000356 | Abnormality of the outer ear |
| HP:0000369 | Low-set ears |
| HP:0000384 | Preauricular skin tag |
| HP:0000396 | Overfolded helix |
| HP:0000405 | Conductive hearing impairment |
| HP:0000413 | Atresia of the external auditory canal |
| HP:0000453 | Choanal atresia |
| HP:0000463 | Anteverted nares |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000506 | Telecanthus |
| HP:0000582 | Upslanted palpebral fissure |
| HP:0000750 | Delayed speech and language development |
| HP:0001177 | Preaxial hand polydactyly |
| HP:0001238 | Slender finger |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001263 | Global developmental delay |
| HP:0001629 | Ventricular septal defect |
| HP:0001631 | Atrial septal defect |
| HP:0002002 | Deep philtrum |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004412_12 | Craniofacial microsomia | 9.000000e-06 |
| GCST008916_39 | Asthma | 8.000000e-12 |
MeSH disease descriptors (6)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D004933 | Esophageal Atresia | C06.198.330; C06.405.117.260; C16.131.314.330 |
| D008342 | Mandibulofacial Dysostosis | C05.116.099.370.231.576; C05.660.207.231.576; C11.270.147.750; C16.131.621.207.231.576 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
| C566906 | Cakut (supp.) | |
| C531835 | Esophageal atresia with or without tracheoesophageal fistula (supp.) | |
| C537405 | Growth and mental retardation, mandibulofacial dysostosis, microcephaly, and cleft palate (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5725038 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 1,538 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1232461 | MOLIBRESIB | 2 | 1,538 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
5 potent at pChembl≥5 of 5 total, top 5 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.23 | Kd | 59.32 | nM | CHEMBL5653589 |
| 7.23 | ED50 | 59.32 | nM | CHEMBL5653589 |
| 7.07 | Kd | 85 | nM | MOLIBRESIB |
| 6.97 | Kd | 108.2 | nM | CHEMBL3752910 |
| 6.97 | ED50 | 108.2 | nM | CHEMBL3752910 |
PubChem BioAssay actives
3 with measured affinity, of 11 total; 3 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148291: Binding affinity to human EFTUD2 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0593 | uM |
| 2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-N-ethylacetamide | 2179080: Binding affinity against EFTUD2 (unknown origin) assessed as apparent dissociation constant incubated for 1 hr by colloidal coomassie staining based LC-MS/MS analysis | kd | 0.0850 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148291: Binding affinity to human EFTUD2 incubated for 45 mins by Kinobead based pull down assay | kd | 0.1082 | uM |
CTD chemical–gene interactions
43 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | increases expression, affects cotreatment, decreases expression | 2 |
| sodium arsenite | decreases expression, increases expression | 2 |
| Particulate Matter | increases expression | 2 |
| FR900359 | increases phosphorylation | 1 |
| TAK-243 | decreases sumoylation | 1 |
| alpha-pinene | increases abundance, affects cotreatment, increases oxidation | 1 |
| beta-lapachone | decreases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| methacrylaldehyde | increases abundance, affects cotreatment, increases oxidation | 1 |
| yessotoxin | decreases expression | 1 |
| 4-phenylbutyric acid | decreases expression | 1 |
| 2,3,5-(triglutathion-S-yl)hydroquinone | increases ADP-ribosylation | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| AM 251 | decreases expression | 1 |
| nutlin 3 | affects cotreatment, increases secretion | 1 |
| ICG 001 | decreases expression | 1 |
| bisphenol B | increases expression | 1 |
| bisphenol S | increases expression | 1 |
| PP242 | decreases expression | 1 |
| bisphenol AF | increases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | decreases expression | 1 |
| Resveratrol | increases phosphorylation | 1 |
| Acetaminophen | affects response to substance | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
| Air Pollutants | increases abundance, increases oxidation, affects cotreatment | 1 |
| Vehicle Emissions | increases expression | 1 |
| Benzo(a)pyrene | increases expression | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Coumestrol | increases expression | 1 |
| Dactinomycin | affects cotreatment, increases secretion | 1 |
ChEMBL screening assays
8 unique, capped per target: 8 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5651333 | Binding | Binding affinity to human EFTUD2 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Clinical trials (associated diseases)
299 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04234971 | PHASE4 | RECRUITING | Cost Effectiveness in Alveolar Bone Grafting in Patients With Cleft Lip and Palate |
| NCT04771156 | PHASE4 | RECRUITING | Ketorolac in Palatoplasty |
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT03766217 | PHASE3 | COMPLETED | Bone Tissue Engineering With Dental Pulp Stem Cells for Alveolar Cleft Repair |
| NCT06284434 | PHASE3 | RECRUITING | Liposomal Bupivacaine Use in Alveolar Bone Graft Patients |
| NCT00226044 | PHASE3 | COMPLETED | Rectal and Oral Omeprazole Treatment of Reflux Disease in Infants. |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT00930124 | PHASE2 | COMPLETED | Cleft Orthognathic Surgery Versus Distraction Osteogenesis - Which is Better? |
| NCT03127345 | PHASE2 | WITHDRAWN | Omega 3 Fatty Acid Treatment for Pediatric Musculoskeletal Health |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | PHASE2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT04115345 | PHASE1 | COMPLETED | A Study of a Renal Autologous Cell Therapy (REACT) in Patients With Chronic Kidney Disease (CKD) From Congenital Anomalies of the Kidney and Urinary Tract (CAKUT). |
| NCT05694169 | PHASE1 | TERMINATED | A Study of Participants With Chronic Kidney Disease Previously Treated With REACT |
| NCT00503191 | PHASE1 | COMPLETED | NeuroModulation Technique Treatment of Autism |
| NCT04475848 | PHASE1 | COMPLETED | A Study to Investigate the Safety, Tolerability, Pharmacokinetics, Pharmacodynamics and Food Effect of RO6953958 in Healthy Participants |
| NCT06300398 | PHASE1 | COMPLETED | IAMA-6 Oral Dose Study in Healthy Adults |
| NCT06408337 | PHASE1/PHASE2 | RECRUITING | Phase I-IIa, to Evaluate the Safety, Feasibility, and Efficacy of the Use of BIOCLEFT in the Treatment of Cleft Palate. |
| NCT00070811 | Not specified | COMPLETED | Assessing the Results of Lip Surgery in Patients With Cleft Lip and Palate |
| NCT00156442 | Not specified | COMPLETED | A Study to Examine the Relationship Between Sleep Apnea and Cleft Lip/Palate |
| NCT01601171 | Not specified | RECRUITING | Genetics of Reproductive Disorders (Including Kallmann Syndrome) and Cleft Lip and/or Palate |
| NCT01871623 | Not specified | UNKNOWN | One-Piece Le Fort I Osteotomy Versus Segmental Le Fort I Osteotomy |
| NCT01932164 | Not specified | COMPLETED | Use of Mesenchymal Stem Cells for Alveolar Bone Tissue Engineering for Cleft Lip and Palate Patients |
| NCT02702869 | Not specified | ENROLLING_BY_INVITATION | Allied Cleft & Craniofacial Quality-Improvement and Research Network (ACCQUIREnet) |
| NCT02789787 | Not specified | COMPLETED | Clinical Effectiveness of Late Maxillary Protraction for Cleft Lip and Palate |
| NCT02845193 | Not specified | COMPLETED | Effect of Novel Nasoalveolar Molding Techniques on Parents’ Satisfaction and Short Term Treatment Outcomes in Unilateral Cleft Lip and Palate Infants: A Randomized Controlled Trial |
| NCT02881606 | Not specified | COMPLETED | Evaluation of the Clinical Effectiveness of Naso-alveolar Molding (NAM) Versus Computer Aided Design NAM (CAD/NAM) in Infants With Bilateral Cleft Lip and Palate: A Randomized Clinical Trial |
| NCT03011489 | Not specified | UNKNOWN | Parent’s Satisfaction and Evaluation of Postsurgical Outcomes in Unilateral Cleft Lip / Palate Newly Born Infants With / Without Vacuum Formed Nasoalveolar Molding Aligners : A Controlled Clinical Trial |
| NCT03065686 | Not specified | RECRUITING | Identification of Genetic Factors Implicated in Orofacial Cleft Using Whole Exome Sequencing |
| NCT03165331 | Not specified | UNKNOWN | Online Psychosocial Support for Young People With a Visible Difference: A Randomised Control Study |
| NCT03217890 | Not specified | UNKNOWN | the Relationship Between Cleft Lip and / or Palate (Different Types) and ABO Blood Groups. |
| NCT03308266 | Not specified | COMPLETED | Electromyographic Analysis of the Masticatory Muscles in Cleft Lip and Palate Children With Temporomandibular Disorders |
| NCT03395015 | Not specified | COMPLETED | Efficacy of Maxillo-facial Treatment on Cleft Lip and Palate Patients Faces: Aesthetic Considerations |
| NCT03514563 | Not specified | TERMINATED | Three Dimensional Facial Growth Analysis |
| NCT03563495 | Not specified | COMPLETED | Tissue Engineered Constructs for Alveolar Cleft Repair |
| NCT03582111 | Not specified | COMPLETED | Ultrasound Diagnosis of Cleft Lip and Palate |
Related Atlas pages
- Associated diseases: mandibulofacial dysostosis-microcephaly syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cleft lip/palate, congenital anomaly of kidney and urinary tract, craniofacial microsomia, esophageal atresia, esophageal atresia/tracheoesophageal fistula, mandibulofacial dysostosis, mandibulofacial dysostosis-microcephaly syndrome