EHD4
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Summary
EHD4 (EH domain containing 4, HGNC:3245) is a protein-coding gene on chromosome 15q15.1, encoding EH domain-containing protein 4 (Q9H223). ATP- and membrane-binding protein that probably controls membrane reorganization/tubulation upon ATP hydrolysis.
Enables cadherin binding activity. Involved in endocytic recycling and protein homooligomerization. Located in endoplasmic reticulum and recycling endosome membrane.
Source: NCBI Gene 30844 — RefSeq curated summary.
At a glance
- GWAS associations: 34
- Clinical variants (ClinVar): 95 total
- MANE Select transcript:
NM_139265
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3245 |
| Approved symbol | EHD4 |
| Name | EH domain containing 4 |
| Location | 15q15.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000103966 |
| Ensembl biotype | protein_coding |
| OMIM | 605892 |
| Entrez | 30844 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 6 protein_coding, 1 retained_intron
ENST00000220325, ENST00000569223, ENST00000857506, ENST00000857507, ENST00000926747, ENST00000952466, ENST00000952467
RefSeq mRNA: 1 — MANE Select: NM_139265
NM_139265
CCDS: CCDS10081
Canonical transcript exons
ENST00000220325 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000391391 | 41895933 | 41901181 |
| ENSE00000677684 | 41909699 | 41909863 |
| ENSE00000677777 | 41943067 | 41943164 |
| ENSE00001107320 | 41972259 | 41972557 |
| ENSE00001277799 | 41919210 | 41919622 |
| ENSE00003684419 | 41953764 | 41953940 |
Expression profiles
Bgee: expression breadth ubiquitous, 281 present calls, max score 95.04.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 20.3531 / max 188.1324, expressed in 1778 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 149539 | 20.3531 | 1778 |
Top tissues by expression
289 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| heart right ventricle | UBERON:0002080 | 95.04 | gold quality |
| synovial joint | UBERON:0002217 | 94.19 | gold quality |
| buccal mucosa cell | CL:0002336 | 94.08 | gold quality |
| pericardium | UBERON:0002407 | 93.83 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 93.80 | gold quality |
| colonic mucosa | UBERON:0000317 | 93.49 | gold quality |
| mucosa of urinary bladder | UBERON:0001259 | 93.37 | gold quality |
| layer of synovial tissue | UBERON:0007616 | 92.50 | gold quality |
| olfactory bulb | UBERON:0002264 | 92.34 | silver quality |
| epithelium of bronchus | UBERON:0002031 | 92.17 | gold quality |
| bronchial epithelial cell | CL:0002328 | 92.07 | gold quality |
| bronchus | UBERON:0002185 | 92.06 | gold quality |
| penis | UBERON:0000989 | 91.63 | gold quality |
| vena cava | UBERON:0004087 | 91.62 | gold quality |
| lower lobe of lung | UBERON:0008949 | 91.62 | gold quality |
| urethra | UBERON:0000057 | 91.13 | gold quality |
| corpus epididymis | UBERON:0004359 | 90.93 | gold quality |
| oviduct epithelium | UBERON:0004804 | 90.65 | gold quality |
| seminal vesicle | UBERON:0000998 | 90.61 | gold quality |
| amniotic fluid | UBERON:0000173 | 90.20 | gold quality |
| mammary duct | UBERON:0001765 | 90.17 | gold quality |
| superficial temporal artery | UBERON:0001614 | 90.03 | gold quality |
| nipple | UBERON:0002030 | 90.00 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 89.98 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 89.87 | gold quality |
| cardiac ventricle | UBERON:0002082 | 89.83 | gold quality |
| heart left ventricle | UBERON:0002084 | 89.67 | gold quality |
| type B pancreatic cell | CL:0000169 | 89.54 | silver quality |
| apex of heart | UBERON:0002098 | 89.49 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 89.48 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-134144 | yes | 45.99 |
| E-HCAD-11 | yes | 41.72 |
| E-GEOD-135922 | yes | 35.58 |
| E-MTAB-5061 | yes | 6.12 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
55 targeting EHD4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
| HSA-MIR-6809-3P | 99.91 | 71.45 | 3814 |
| HSA-MIR-4753-3P | 99.90 | 71.03 | 3786 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-6783-3P | 99.89 | 67.92 | 2059 |
| HSA-MIR-1343-3P | 99.89 | 66.78 | 1815 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-130B-5P | 99.83 | 68.50 | 1888 |
| HSA-MIR-4659A-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-4659B-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-1283 | 99.69 | 72.42 | 3009 |
| HSA-MIR-5004-5P | 99.68 | 66.63 | 1294 |
| HSA-MIR-3158-5P | 99.65 | 67.51 | 1763 |
| HSA-MIR-4452 | 99.50 | 68.45 | 1493 |
| HSA-MIR-6727-3P | 99.49 | 65.92 | 1333 |
| HSA-MIR-3612 | 99.45 | 66.02 | 1333 |
| HSA-MIR-650 | 99.45 | 65.77 | 1309 |
| HSA-MIR-942-5P | 99.41 | 68.40 | 1977 |
| HSA-MIR-4722-3P | 99.35 | 65.22 | 1099 |
| HSA-MIR-130A-5P | 99.33 | 70.26 | 2623 |
| HSA-MIR-1206 | 99.30 | 69.32 | 1016 |
Literature-anchored findings (GeneRIF, showing 8)
- EHD4 is involved in the control of trafficking at the early endosome and regulates exit of cargo toward both the recycling compartment and the late endocytic pathway. (PMID:18331452)
- A new class of cardiac trafficking proteins(EHD1, EHD2, EHD3, EHD4) regulates cardiac membrane protein targeting. (PMID:20489164)
- Retrograde signaling through Pincher-generated Trk-multivesicular bodies is distinctively refractory to signal termination by lysosomal processing (PMID:21187387)
- Ezrin and EHD4 appear to be involved in the ability of Nef to increase hiv-1 virus infectivity. (PMID:23325686)
- evidence that the functions of both EHD1 and EHD4 are primarily in TRE membrane vesiculation, whereas EHD3 is a membrane-tubulating protein. (PMID:24019528)
- Identification of phostensin in association with Eps 15 homology domain-containing protein 1 (EHD1) and EHD4. (PMID:32800345)
- Eps15 Homology Domain Protein 4 (EHD4) is required for Eps15 Homology Domain Protein 1 (EHD1)-mediated endosomal recruitment and fission. (PMID:32966336)
- A junctional PACSIN2/EHD4/MICAL-L1 complex coordinates VE-cadherin trafficking for endothelial migration and angiogenesis. (PMID:33972531)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ehd4 | ENSDARG00000054302 |
| mus_musculus | Ehd4 | ENSMUSG00000027293 |
| rattus_norvegicus | Ehd4 | ENSRNOG00000007584 |
Paralogs (10): EHD3 (ENSG00000013016), EHD2 (ENSG00000024422), EPS15 (ENSG00000085832), EHD1 (ENSG00000110047), EPS15L1 (ENSG00000127527), REPS1 (ENSG00000135597), REPS2 (ENSG00000169891), SRL (ENSG00000185739), ITSN2 (ENSG00000198399), ITSN1 (ENSG00000205726)
Protein
Protein identifiers
EH domain-containing protein 4 — Q9H223 (reviewed: Q9H223)
Alternative names: Hepatocellular carcinoma-associated protein 10/11, PAST homolog 4
All UniProt accessions (1): Q9H223
UniProt curated annotations — full annotation on UniProt →
Function. ATP- and membrane-binding protein that probably controls membrane reorganization/tubulation upon ATP hydrolysis. Plays a role in early endosomal transport. During sprouting angiogenesis, in complex with PACSIN2 and MICALL1, forms recycling endosome-like tubular structure at asymmetric adherens junctions to control CDH5 trafficking.
Subunit / interactions. Homooligomer, and heterooligomer with EHD1, EHD2 and EHD3. Forms a complex with EHD4 and MICALL1; the complex controls CDH5 trafficking and coordinates angiogenesis.
Subcellular location. Early endosome membrane. Recycling endosome membrane. Cell membrane. Cell junction. Adherens junction.
Tissue specificity. Highly expressed in pancreas and heart.
Domain organisation. The EH domain interacts with Asn-Pro-Phe (NPF) motifs of target proteins.
Similarity. Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. EHD subfamily.
RefSeq proteins (1): NP_644670* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000261 | EH_dom | Domain |
| IPR002048 | EF_hand_dom | Domain |
| IPR011992 | EF-hand-dom_pair | Homologous_superfamily |
| IPR018247 | EF_Hand_1_Ca_BS | Binding_site |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR030381 | G_DYNAMIN_dom | Domain |
| IPR031692 | EHD_N | Domain |
| IPR040990 | DUF5600 | Domain |
| IPR045063 | Dynamin_N | Domain |
Pfam: PF00350, PF12763, PF16880, PF18150
UniProt features (25 total): binding site 8, region of interest 5, modified residue 4, domain 3, sequence conflict 3, chain 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9H223-F1 | 88.19 | 0.66 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (8): 223; 261; 492; 494; 496; 498; 503; 68–75
Post-translational modifications (4): 1, 162, 451, 459
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 331 (showing top):
GOBP_PINOCYTOSIS, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GOBP_CELL_MIGRATION_INVOLVED_IN_SPROUTING_ANGIOGENESIS, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, GOBP_VESICLE_MEDIATED_TRANSPORT, TAL1ALPHAE47_01, GOBP_PROTEIN_LOCALIZATION_TO_CELL_PERIPHERY, GOBP_REGULATION_OF_VESICLE_MEDIATED_TRANSPORT, WEI_MYCN_TARGETS_WITH_E_BOX, GOBP_BLOOD_VESSEL_ENDOTHELIAL_CELL_MIGRATION, GOBP_SPROUTING_ANGIOGENESIS, SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM3, BRN2_01, GROSS_HYPOXIA_VIA_ELK3_UP, GOBP_CILIUM_ORGANIZATION
GO Biological Process (9): cell migration involved in sprouting angiogenesis (GO:0002042), endocytosis (GO:0006897), pinocytosis (GO:0006907), regulation of endocytosis (GO:0030100), endocytic recycling (GO:0032456), protein homooligomerization (GO:0051260), cilium assembly (GO:0060271), cellular response to growth factor stimulus (GO:0071363), protein localization to plasma membrane (GO:0072659)
GO Molecular Function (9): nucleic acid binding (GO:0003676), calcium ion binding (GO:0005509), ATP binding (GO:0005524), GTP binding (GO:0005525), protein-macromolecule adaptor activity (GO:0030674), cadherin binding (GO:0045296), nucleotide binding (GO:0000166), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (14): nucleus (GO:0005634), cytoplasm (GO:0005737), early endosome (GO:0005769), endoplasmic reticulum (GO:0005783), plasma membrane (GO:0005886), adherens junction (GO:0005912), membrane (GO:0016020), endocytic vesicle (GO:0030139), early endosome membrane (GO:0031901), perinuclear region of cytoplasm (GO:0048471), recycling endosome membrane (GO:0055038), extracellular exosome (GO:0070062), endosome (GO:0005768), anchoring junction (GO:0070161)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| endocytosis | 2 |
| binding | 2 |
| purine ribonucleoside triphosphate binding | 2 |
| intracellular membrane-bounded organelle | 2 |
| cytoplasm | 2 |
| endomembrane system | 2 |
| cytoplasmic vesicle | 2 |
| endosome membrane | 2 |
| sprouting angiogenesis | 1 |
| blood vessel endothelial cell migration | 1 |
| vesicle budding from membrane | 1 |
| membrane invagination | 1 |
| vesicle-mediated transport | 1 |
| import into cell | 1 |
| regulation of cellular component organization | 1 |
| regulation of vesicle-mediated transport | 1 |
| endosomal transport | 1 |
| vesicle-mediated transport to the plasma membrane | 1 |
| protein complex oligomerization | 1 |
| axoneme assembly | 1 |
| intraciliary transport involved in cilium assembly | 1 |
| cilium organization | 1 |
| protein localization to cilium | 1 |
| organelle assembly | 1 |
| trans-Golgi to periciliary membrane compartment transport | 1 |
| plasma membrane bounded cell projection assembly | 1 |
| ciliary transition zone assembly | 1 |
| response to growth factor | 1 |
| cellular response to endogenous stimulus | 1 |
| protein localization to membrane | 1 |
| protein localization to cell periphery | 1 |
| metal ion binding | 1 |
| adenyl ribonucleotide binding | 1 |
| guanyl ribonucleotide binding | 1 |
| protein binding | 1 |
| molecular adaptor activity | 1 |
| cell adhesion molecule binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
Protein interactions and networks
STRING
840 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EHD4 | RBSN | Q9H1K0 | 694 |
| EHD4 | NUMB | P49757 | 634 |
| EHD4 | NUMBL | Q9Y6R0 | 632 |
| EHD4 | EHBP1 | Q8NDI1 | 626 |
| EHD4 | PACSIN1 | Q9BY11 | 546 |
| EHD4 | SNAP29 | O95721 | 528 |
| EHD4 | MICALL1 | Q8N3F8 | 520 |
| EHD4 | RAB11FIP2 | Q7L804 | 505 |
| EHD4 | CDH23 | Q9H251 | 490 |
| EHD4 | PACSIN2 | Q9UNF0 | 472 |
| EHD4 | SNAP25 | P13795 | 466 |
| EHD4 | EPS15 | P42566 | 456 |
| EHD4 | ARF6 | P26438 | 447 |
| EHD4 | SLCO6A1 | Q86UG4 | 440 |
| EHD4 | RAB11A | P24410 | 436 |
IntAct
93 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| EXOC8 | EXOC5 | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| GOLM1 | EGFR | psi-mi:“MI:0914”(association) | 0.640 |
| EHD2 | EHD4 | psi-mi:“MI:0914”(association) | 0.640 |
| MICALL1 | EHD4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PCDHB16 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| FAM174A | BLTP3B | psi-mi:“MI:0914”(association) | 0.530 |
| LPAR1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| ANK2 | EHD4 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GNAT3 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| AFP | EHD4 | psi-mi:“MI:0915”(physical association) | 0.370 |
| RASGRF1 | EHD4 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CLTC | psi-mi:“MI:0914”(association) | 0.350 | |
| GOLM1 | RAB19 | psi-mi:“MI:0914”(association) | 0.350 |
| PPP1CA | ACO2 | psi-mi:“MI:0914”(association) | 0.350 |
| EHD4 | DNAJA2 | psi-mi:“MI:0914”(association) | 0.350 |
| LRRK2 | psi-mi:“MI:0914”(association) | 0.350 | |
| POC5 | CEP290 | psi-mi:“MI:0914”(association) | 0.350 |
| POC5 | CSTA | psi-mi:“MI:0914”(association) | 0.350 |
| POC5 | DSC2 | psi-mi:“MI:0914”(association) | 0.350 |
| VWA5A | PIPSL | psi-mi:“MI:0914”(association) | 0.350 |
| TPCN2 | DDX11L8 | psi-mi:“MI:0914”(association) | 0.350 |
| NTRK3 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM52B | PIK3R2 | psi-mi:“MI:0914”(association) | 0.350 |
| OLFM3 | AGRN | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (163): EHD4 (Affinity Capture-MS), EHD4 (Affinity Capture-MS), EHD4 (Affinity Capture-MS), EHD4 (Affinity Capture-MS), EHD4 (Affinity Capture-MS), EHD4 (Affinity Capture-MS), EHD4 (Affinity Capture-MS), DDOST (Co-fractionation), EHD4 (Co-fractionation), UQCRC2 (Co-fractionation), WARS (Co-fractionation), EHD4 (Affinity Capture-MS), EHD4 (Affinity Capture-MS), EHD4 (Affinity Capture-MS), EHD4 (Affinity Capture-MS)
ESM2 similar proteins: A0A060LAL9, A0A097ZPE6, A0A1I9R3Y5, A2VEI2, A2XVG1, A2YGP6, A4IFE9, A8B479, A8WQT4, B3H7A9, F4I1L3, G1JSL4, O15321, O22585, O22788, O45228, O64407, O65015, O81270, P10538, P31252, P58021, P80363, Q28C60, Q43727, Q5R8F1, Q5R8Y6, Q5Z8Y4, Q623S8, Q66HF2, Q66HG5, Q6DCK1, Q7FAX1, Q7JW12, Q8CD10, Q8IYU8, Q95PZ2, Q99805, Q99P63, Q9CAB7
Diamond homologs: A1CD74, A1CPG1, A1D2B8, A1DC51, A1DDY6, A2QRG2, A2R180, A3LN86, A3M008, A4R8N4, A5DF78, A5DP36, A5DVD6, A5DXI9, A6R7X5, A6RFP4, A6S9N4, A6SIJ6, A7E7N7, A7EKZ0, B0XR88, B0YC95, B2AS96, B2AWS3, L7IIY8, O42287, O54916, O94685, P0CT09, P32521, P42566, P42567, Q0CPW4, Q0D0N9, Q1DQC1, Q1DUU2, Q2H2V8, Q2H922, Q2UCH0, Q2UDY8
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 122 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| endocytosis | 9 | 8.1× | 8e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
95 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 82 |
| Likely benign | 2 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1147 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:41900668:T:TA | donor_gain | 1.0000 |
| 15:41900669:C:A | donor_gain | 1.0000 |
| 15:41900719:AG:A | donor_gain | 1.0000 |
| 15:41901179:TTCCT:T | acceptor_loss | 1.0000 |
| 15:41901182:C:CC | acceptor_gain | 1.0000 |
| 15:41901182:CTGC:C | acceptor_loss | 1.0000 |
| 15:41919204:GCTTA:G | donor_loss | 1.0000 |
| 15:41919205:CTTA:C | donor_loss | 1.0000 |
| 15:41919206:TTACC:T | donor_loss | 1.0000 |
| 15:41919207:TACCT:T | donor_loss | 1.0000 |
| 15:41919208:A:C | donor_loss | 1.0000 |
| 15:41919621:GCC:G | acceptor_loss | 1.0000 |
| 15:41919623:CTG:C | acceptor_loss | 1.0000 |
| 15:41943063:TGACC:T | donor_loss | 1.0000 |
| 15:41943064:GACCT:G | donor_loss | 1.0000 |
| 15:41943065:ACCTC:A | donor_loss | 1.0000 |
| 15:41943066:C:CG | donor_loss | 1.0000 |
| 15:41953759:CTTA:C | donor_loss | 1.0000 |
| 15:41953761:TACC:T | donor_loss | 1.0000 |
| 15:41953762:A:AC | donor_gain | 1.0000 |
| 15:41953763:C:CC | donor_gain | 1.0000 |
| 15:41953936:GGTAT:G | acceptor_gain | 1.0000 |
| 15:41953937:GTAT:G | acceptor_gain | 1.0000 |
| 15:41953938:TAT:T | acceptor_gain | 1.0000 |
| 15:41953939:AT:A | acceptor_gain | 1.0000 |
| 15:41953940:TC:T | acceptor_loss | 1.0000 |
| 15:41953941:C:CC | acceptor_gain | 1.0000 |
| 15:41972254:GGTAC:G | donor_loss | 1.0000 |
| 15:41972255:GTACC:G | donor_loss | 1.0000 |
| 15:41972256:TACCT:T | donor_loss | 1.0000 |
AlphaMissense
3579 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 15:41900742:A:G | L510P | 1.000 |
| 15:41900947:A:G | W442R | 1.000 |
| 15:41900947:A:T | W442R | 1.000 |
| 15:41909838:A:G | L317P | 1.000 |
| 15:41919413:A:G | W241R | 1.000 |
| 15:41919413:A:T | W241R | 1.000 |
| 15:41919418:A:G | L239P | 1.000 |
| 15:41919439:A:G | L232P | 1.000 |
| 15:41919465:C:A | K223N | 1.000 |
| 15:41919465:C:G | K223N | 1.000 |
| 15:41919472:A:G | L221P | 1.000 |
| 15:41943102:C:T | G159D | 1.000 |
| 15:41943103:C:G | G159R | 1.000 |
| 15:41943107:G:C | S157R | 1.000 |
| 15:41943107:G:T | S157R | 1.000 |
| 15:41943109:T:G | S157R | 1.000 |
| 15:41953836:C:T | G114E | 1.000 |
| 15:41953837:C:A | G114W | 1.000 |
| 15:41953893:G:T | P95H | 1.000 |
| 15:41972271:G:A | T75I | 1.000 |
| 15:41972277:C:T | G73D | 1.000 |
| 15:41972282:G:C | S71R | 1.000 |
| 15:41972282:G:T | S71R | 1.000 |
| 15:41972284:T:G | S71R | 1.000 |
| 15:41972287:A:G | Y70H | 1.000 |
| 15:41972301:A:G | L65P | 1.000 |
| 15:41900752:C:G | A507P | 0.999 |
| 15:41900754:A:G | L506P | 0.999 |
| 15:41900775:A:G | L499P | 0.999 |
| 15:41900775:A:T | L499H | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000056529 (15:41935194 C>G), RS1000065345 (15:41973469 C>T), RS1000096670 (15:41968940 C>T), RS1000111594 (15:41930824 C>G), RS1000121536 (15:41930596 C>T), RS1000122623 (15:41906219 AC>A), RS1000148727 (15:41927807 A>T), RS1000157414 (15:41912560 T>C), RS1000204617 (15:41956182 C>T), RS1000282949 (15:41966566 A>T), RS1000297481 (15:41929578 G>A), RS1000314636 (15:41912844 T>C), RS1000338921 (15:41923640 T>G), RS1000339626 (15:41904264 G>C), RS1000357650 (15:41917836 A>C,G)
Disease associations
OMIM: gene MIM:605892 | disease phenotypes: MIM:189800
GenCC curated gene-disease
Mondo (1): preeclampsia (MONDO:0005081)
Orphanet (1): Preeclampsia (Orphanet:275555)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
34 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004603_231 | Platelet count | 6.000000e-09 |
| GCST004610_141 | White blood cell count | 4.000000e-16 |
| GCST004613_41 | Sum neutrophil eosinophil counts | 1.000000e-16 |
| GCST004613_46 | Sum neutrophil eosinophil counts | 1.000000e-17 |
| GCST004614_19 | Granulocyte count | 8.000000e-18 |
| GCST004614_20 | Granulocyte count | 2.000000e-16 |
| GCST004620_89 | Sum basophil neutrophil counts | 2.000000e-15 |
| GCST004620_94 | Sum basophil neutrophil counts | 3.000000e-17 |
| GCST004625_148 | Monocyte count | 1.000000e-16 |
| GCST004625_149 | Monocyte count | 1.000000e-28 |
| GCST004626_130 | Myeloid white cell count | 2.000000e-19 |
| GCST004626_131 | Myeloid white cell count | 3.000000e-19 |
| GCST004629_140 | Neutrophil count | 4.000000e-17 |
| GCST004629_141 | Neutrophil count | 8.000000e-16 |
| GCST004632_44 | Lymphocyte percentage of white cells | 7.000000e-12 |
| GCST005977_14 | Monocyte count | 4.000000e-08 |
| GCST006979_1018 | Heel bone mineral density | 8.000000e-11 |
| GCST009028_38 | Adverse response to drug | 2.000000e-07 |
| GCST90002385_43 | High light scatter reticulocyte count | 2.000000e-11 |
| GCST90002386_592 | High light scatter reticulocyte percentage of red cells | 7.000000e-14 |
| GCST90002389_296 | Lymphocyte percentage of white cells | 3.000000e-24 |
| GCST90002389_297 | Lymphocyte percentage of white cells | 1.000000e-09 |
| GCST90002393_602 | Monocyte count | 6.000000e-23 |
| GCST90002393_603 | Monocyte count | 2.000000e-40 |
| GCST90002394_488 | Monocyte percentage of white cells | 1.000000e-12 |
| GCST90002398_281 | Neutrophil count | 9.000000e-19 |
| GCST90002398_282 | Neutrophil count | 3.000000e-25 |
| GCST90002399_362 | Neutrophil percentage of white cells | 5.000000e-17 |
| GCST90002400_154 | Plateletcrit | 1.000000e-11 |
| GCST90002402_159 | Platelet count | 8.000000e-12 |
EFO canonical traits (13, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004309 | platelet count |
| EFO:0004833 | neutrophil count |
| EFO:0004842 | eosinophil count |
| EFO:0007987 | granulocyte count |
| EFO:0005090 | basophil count |
| EFO:0005091 | monocyte count |
| EFO:0007993 | lymphocyte percentage of leukocytes |
| EFO:0009270 | heel bone mineral density |
| EFO:0009658 | adverse effect |
| EFO:0007986 | reticulocyte count |
| EFO:0007989 | monocyte percentage of leukocytes |
| EFO:0007990 | neutrophil percentage of leukocytes |
| EFO:0007985 | platelet crit |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D011225 | Pre-Eclampsia | C12.050.703.395.249 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
58 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression, increases methylation | 8 |
| bisphenol A | decreases methylation, increases expression | 3 |
| Tetrachlorodibenzodioxin | increases expression | 3 |
| Tobacco Smoke Pollution | increases expression, affects expression, decreases methylation | 3 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 2 |
| Nickel | increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Smoke | decreases expression | 2 |
| Cyclosporine | increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| methylmercuric chloride | decreases expression | 1 |
| glycidyl methacrylate | increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| butyraldehyde | increases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| ochratoxin A | decreases expression | 1 |
| bleomycetin | increases expression | 1 |
| coumarin | increases phosphorylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, decreases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| entinostat | increases expression | 1 |
| abrine | increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| bisphenol S | increases expression | 1 |
| LDN 193189 | affects cotreatment, decreases expression | 1 |
| Temozolomide | increases expression | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00117546 | PHASE4 | UNKNOWN | Cardiovascular and Autonomic Reactivity in Women With a History of Pre-eclampsia |
| NCT00567957 | PHASE4 | UNKNOWN | Remifentanil for General Anesthesia in Preeclamptics |
| NCT01030627 | PHASE4 | COMPLETED | Treatment Approaches to Preeclampsia |
| NCT01352234 | PHASE4 | COMPLETED | Comparison of Doses of Acetylsalicylic Acid in Women With Previous History of Preeclampsia |
| NCT01361425 | PHASE4 | UNKNOWN | Anti-Hypertensive Treatment In Stable Pregnant Women With Severe Pre-Eclampsia (Metildopape) |
| NCT01729468 | PHASE4 | COMPLETED | Prevention of Pre-eclampsia and SGA by Low-Dose Aspirin in Nulliparous Women With Abnormal First-trimester Uterine Artery Dopplers |
| NCT01761916 | PHASE4 | COMPLETED | Clonidine Versus Captopril for Treatment of Postpartum Very High Blood Pressure |
| NCT01912677 | PHASE4 | COMPLETED | Oral Antihypertensive Regimens for Management of Hypertension in Pregnancy |
| NCT02025426 | PHASE4 | TERMINATED | Phenylephrine Versus Ephedrine in Pre-eclampsia |
| NCT02091401 | PHASE4 | COMPLETED | A Trial Comparing Treatment With the Springfusor Infusion Pump to the IV Magnesium Sulfate Regimen |
| NCT02163655 | PHASE4 | COMPLETED | Diuretics for Postpartum High Blood Pressure in Preeclampsia |
| NCT02338687 | PHASE4 | COMPLETED | Low Dose Calcium to Prevent Preeclampsia |
| NCT02396030 | PHASE4 | TERMINATED | Different Schemes of Magnesium Sulfate for Preeclampsia |
| NCT02531490 | PHASE4 | UNKNOWN | Early Vascular Adjustments During Hypertensive Pregnancy |
| NCT02699827 | PHASE4 | COMPLETED | Adding MgSO4 to Epidural Levobupivacaine in CS for Patients With Preeclampsia |
| NCT02835339 | PHASE4 | COMPLETED | Magnesium Sulfate in Obese Preeclamptics |
| NCT02891174 | PHASE4 | COMPLETED | The Effect of Ibuprofen on Post-partum Blood Pressure in Women With Hypertensive Disorders of Pregnancy |
| NCT02911701 | PHASE4 | COMPLETED | Effect of Acetaminophen on Postpartum Blood Pressure Control in Preeclampsia With Severe Features |
| NCT03171480 | PHASE4 | COMPLETED | Use of Nitrous Oxide Donor for Labor Induction in Women With PreEclampsia |
| NCT03233880 | PHASE4 | UNKNOWN | Impact of Antichlamydial Treatment on the Rate of Preeclampsia |
| NCT03237000 | PHASE4 | UNKNOWN | Effect of Administering Intravenous Magnesium Sulfate on Fetal Cardiotocography and Neonatal Outcome in Preeclamptic Patients |
| NCT03506724 | PHASE4 | COMPLETED | Response to Anti-hypertensives in Pregnant and Postpartum Patients |
| NCT03674606 | PHASE4 | COMPLETED | Trial of Early Screening Test for Pre-eclampsia and Growth Restriction |
| NCT03735433 | PHASE4 | TERMINATED | The Effect of Two Aspirin Dosing Strategies for Obese Women at High Risk for Preeclampsia |
| NCT03824119 | PHASE4 | UNKNOWN | Postpartum NSAIDS and Maternal Hypertension |
| NCT04051567 | PHASE4 | UNKNOWN | Low-dose Aspirin for Prevention of Adverse Pregnancy Outcomes in Twin Pregnancies |
| NCT04077853 | PHASE4 | COMPLETED | Progesterone in Expectantly Managed Early-onset Preeclampsia |
| NCT04158830 | PHASE4 | WITHDRAWN | Aspirin (ASA) Therapy and Preeclampsia Prevention |
| NCT04424693 | PHASE4 | UNKNOWN | Comparing the Incidence of Preeclampsia Between Pregnant Women Receiving Tdap Vaccinations at Week 28 or at Week 36 |
| NCT04631627 | PHASE4 | UNKNOWN | Early Prediction and Randomised Prevention of Preeclampsia With Low Dose Aspirin in Chinese Cohort |
| NCT04656665 | PHASE4 | UNKNOWN | The Effectiveness of Aspirin on Preventing Pre-eclampsia |
| NCT04797949 | PHASE4 | WITHDRAWN | Adherence to Universal Aspirin Compared to Screening Indicated Aspirin for Prevention of Preeclampsia |
| NCT04908982 | PHASE4 | UNKNOWN | Aspirin for the Prevention of Preeclampsia in Women With Stage 1 Hypertension |
| NCT05221164 | PHASE4 | UNKNOWN | 162 mg of Aspirin for Prevention of Preeclampsia |
| NCT05294952 | PHASE4 | UNKNOWN | co Ihibtory Receptor in Preeclampsia |
| NCT05514847 | PHASE4 | ACTIVE_NOT_RECRUITING | Low Dose Aspirin for Preterm Preeclampsia Preventionmg/day Dose in High-risk Patients |
| NCT05586373 | PHASE4 | COMPLETED | Ibuprofen vs Dipyrone After C-section in Preeclampsia |
| NCT06069102 | PHASE4 | COMPLETED | Optimal Blood Pressure Treatment Thresholds Postpartum |
| NCT06107335 | PHASE4 | NOT_YET_RECRUITING | Effect of Albumin Versus Routine Care on Hemodynamic Response and Stability in Patients With Preeclampsia Guided by a Non-invasive Hemodynamic Monitoring System During Cesarean Delivery With Spinal Anesthesia |
| NCT06281665 | PHASE4 | RECRUITING | Treatment With Aspirin After Preeclampsia: TAP Trial |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): preeclampsia