EIF3CL
gene geneOn this page
Summary
EIF3CL (eukaryotic translation initiation factor 3 subunit C like, HGNC:26347) is a protein-coding gene on chromosome 16p12.1, encoding Eukaryotic translation initiation factor 3 subunit C-like protein (B5ME19). Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis.
The protein encoded by this gene is a core subunit of the eukaryotic translation initiation factor 3 (eIF3) complex. The encoded protein is nearly identical to another protein, eIF3c, from a related gene. The eIF3 complex binds the 40S ribosome and mRNAs to enable translation initiation. Several transcript variants encoding the same protein have been found for this gene.
Source: NCBI Gene 728689 — RefSeq curated summary.
At a glance
- GWAS associations: 5
- Clinical variants (ClinVar): 12 total
- MANE Select transcript:
NM_001317857
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26347 |
| Approved symbol | EIF3CL |
| Name | eukaryotic translation initiation factor 3 subunit C like |
| Location | 16p12.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000205609 |
| Ensembl biotype | protein_coding |
| Entrez | 728689 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 8 protein_coding
ENST00000380876, ENST00000398944, ENST00000864343, ENST00000918077, ENST00000918078, ENST00000962381, ENST00000962382, ENST00000962383
RefSeq mRNA: 3 — MANE Select: NM_001317857
NM_001099661, NM_001317856, NM_001317857
CCDS: CCDS42136
Canonical transcript exons
ENST00000380876 — 21 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001602876 | 28391980 | 28392142 |
| ENSE00001622183 | 28400615 | 28400669 |
| ENSE00001631040 | 28388508 | 28388698 |
| ENSE00001636926 | 28380292 | 28380379 |
| ENSE00001666906 | 28401539 | 28401604 |
| ENSE00001679591 | 28388058 | 28388282 |
| ENSE00001697307 | 28383118 | 28383481 |
| ENSE00001709881 | 28391752 | 28391855 |
| ENSE00001712108 | 28380468 | 28380533 |
| ENSE00001718695 | 28400377 | 28400486 |
| ENSE00001722268 | 28379976 | 28380138 |
| ENSE00001735371 | 28399871 | 28399998 |
| ENSE00001736622 | 28401207 | 28401396 |
| ENSE00001755465 | 28390840 | 28390981 |
| ENSE00001759897 | 28380632 | 28380791 |
| ENSE00001761111 | 28390520 | 28390645 |
| ENSE00001776765 | 28400859 | 28400984 |
| ENSE00001790058 | 28390291 | 28390384 |
| ENSE00001849218 | 28403787 | 28403841 |
| ENSE00001940731 | 28379715 | 28379880 |
| ENSE00002367001 | 28403518 | 28403648 |
Expression profiles
Bgee: expression breadth ubiquitous, 134 present calls, max score 92.94.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 24.6456 / max 201.7010, expressed in 1810 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 153386 | 24.6456 | 1810 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| apex of heart | UBERON:0002098 | 92.94 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 87.00 | gold quality |
| heart left ventricle | UBERON:0002084 | 85.92 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 84.90 | gold quality |
| colonic epithelium | UBERON:0000397 | 84.08 | gold quality |
| right atrium auricular region | UBERON:0006631 | 84.07 | gold quality |
| heart | UBERON:0000948 | 83.67 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 83.27 | gold quality |
| gastrocnemius | UBERON:0001388 | 83.00 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 82.91 | gold quality |
| Ammon’s horn | UBERON:0001954 | 82.65 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 82.43 | gold quality |
| right frontal lobe | UBERON:0002810 | 82.36 | gold quality |
| putamen | UBERON:0001874 | 81.94 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 81.90 | gold quality |
| amygdala | UBERON:0001876 | 81.63 | gold quality |
| muscle of leg | UBERON:0001383 | 81.56 | gold quality |
| stromal cell of endometrium | CL:0002255 | 81.53 | gold quality |
| temporal lobe | UBERON:0001871 | 81.52 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 80.96 | gold quality |
| nucleus accumbens | UBERON:0001882 | 80.68 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 80.68 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 80.58 | gold quality |
| cerebral cortex | UBERON:0000956 | 80.48 | gold quality |
| primary visual cortex | UBERON:0002436 | 80.46 | gold quality |
| right lobe of liver | UBERON:0001114 | 80.34 | gold quality |
| muscle tissue | UBERON:0002385 | 80.33 | gold quality |
| substantia nigra | UBERON:0002038 | 80.32 | gold quality |
| brain | UBERON:0000955 | 80.30 | gold quality |
| hypothalamus | UBERON:0001898 | 80.18 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 18.24 |
| E-MTAB-8060 | no | 554.92 |
| E-CURD-53 | no | 511.71 |
| E-MTAB-7008 | no | 81.12 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
23 targeting EIF3CL, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3617-3P | 99.98 | 67.86 | 918 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-4437 | 99.52 | 65.29 | 1266 |
| HSA-MIR-122B-5P | 99.46 | 70.81 | 1457 |
| HSA-MIR-3606-5P | 99.31 | 69.67 | 1168 |
| HSA-MIR-877-3P | 99.09 | 68.10 | 1637 |
| HSA-MIR-1228-3P | 99.00 | 66.53 | 857 |
| HSA-MIR-873-5P | 98.84 | 66.90 | 1348 |
| HSA-MIR-1199-5P | 98.44 | 66.51 | 829 |
| HSA-MIR-6751-3P | 98.44 | 66.35 | 835 |
| HSA-MIR-4660 | 97.79 | 67.44 | 1328 |
| HSA-MIR-4759 | 97.39 | 65.86 | 608 |
| HSA-MIR-134-5P | 97.11 | 66.52 | 976 |
| HSA-MIR-3118 | 97.11 | 66.58 | 984 |
| HSA-MIR-921 | 97.09 | 66.45 | 562 |
| HSA-MIR-215-3P | 97.02 | 68.01 | 1209 |
| HSA-MIR-6759-3P | 96.94 | 68.31 | 823 |
| HSA-MIR-34A-3P | 96.80 | 67.70 | 805 |
| HSA-MIR-6854-5P | 96.77 | 65.96 | 848 |
| HSA-MIR-6857-3P | 96.70 | 65.43 | 915 |
| HSA-MIR-3117-3P | 95.96 | 67.82 | 473 |
| HSA-MIR-8083 | 95.93 | 67.55 | 694 |
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | eif3c | ENSDARG00000016443 |
| mus_musculus | Eif3c | ENSMUSG00000030738 |
| rattus_norvegicus | Eif3c | ENSRNOG00000018761 |
| drosophila_melanogaster | eIF3c | FBGN0034258 |
| caenorhabditis_elegans | eif-3.C | WBGENE00001226 |
Paralogs (1): EIF3C (ENSG00000184110)
Protein
Protein identifiers
Eukaryotic translation initiation factor 3 subunit C-like protein — B5ME19 (reviewed: B5ME19)
All UniProt accessions (1): B5ME19
UniProt curated annotations — full annotation on UniProt →
Function. Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression.
Subunit / interactions. Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is composed of 13 subunits: EIF3A, EIF3B, EIF3C, EIF3D, EIF3E, EIF3F, EIF3G, EIF3H, EIF3I, EIF3J, EIF3K, EIF3L and EIF3M. The eIF-3 complex appears to include 3 stable modules: module A is composed of EIF3A, EIF3B, EIF3G and EIF3I; module B is composed of EIF3F, EIF3H, and EIF3M; and module C is composed of EIF3C, EIF3D, EIF3E, EIF3K and EIF3L. EIF3C of module C binds EIF3B of module A and EIF3H of module B, thereby linking the three modules. EIF3J is a labile subunit that binds to the eIF-3 complex via EIF3B. The eIF-3 complex interacts with RPS6KB1 under conditions of nutrient depletion. Mitogenic stimulation leads to binding and activation of a complex composed of MTOR and RPTOR, leading to phosphorylation and release of RPS6KB1 and binding of EIF4B to eIF-3.
Subcellular location. Cytoplasm.
Post-translational modifications. Phosphorylated. Phosphorylation is enhanced upon serum stimulation.
Similarity. Belongs to the eIF-3 subunit C family.
RefSeq proteins (3): NP_001093131, NP_001304785, NP_001304786* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000717 | PCI_dom | Domain |
| IPR008905 | EIF3C_N_dom | Domain |
| IPR027516 | EIF3C | Family |
| IPR036388 | WH-like_DNA-bd_sf | Homologous_superfamily |
| IPR036390 | WH_DNA-bd_sf | Homologous_superfamily |
| IPR058999 | EIF3CL_C | Domain |
Pfam: PF01399, PF05470, PF26569
UniProt features (29 total): modified residue 15, compositionally biased region 8, region of interest 4, chain 1, domain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-B5ME19-F1 | 74.11 | 0.27 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (15): 9, 11, 13, 15, 16, 18, 39, 99, 166, 178, 181, 182, 525, 644, 910
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 29 (showing top):
GOBP_CYTOPLASMIC_TRANSLATION, GOBP_TRANSLATIONAL_INITIATION, GOCC_EUKARYOTIC_TRANSLATION_INITIATION_FACTOR_3_COMPLEX, GOMF_TRANSLATION_INITIATION_FACTOR_ACTIVITY, GOBP_TRANSLATION, GOBP_CYTOPLASMIC_TRANSLATIONAL_INITIATION, GOBP_PROTEIN_RNA_COMPLEX_ORGANIZATION, LINDVALL_IMMORTALIZED_BY_TERT_UP, GOBP_RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS, chr16p12, GOCC_RIBONUCLEOPROTEIN_COMPLEX, GOCC_CYTOSOLIC_TRANSLATION_PREINITIATION_COMPLEX, GOMF_TRANSLATION_INITIATION_FACTOR_BINDING, E2F3_UP.V1_DN, SRC_UP.V1_DN
GO Biological Process (4): formation of cytoplasmic translation initiation complex (GO:0001732), translational initiation (GO:0006413), cytoplasmic translational initiation (GO:0002183), translation (GO:0006412)
GO Molecular Function (4): RNA binding (GO:0003723), translation initiation factor activity (GO:0003743), translation initiation factor binding (GO:0031369), protein binding (GO:0005515)
GO Cellular Component (4): eukaryotic translation initiation factor 3 complex (GO:0005852), eukaryotic 43S preinitiation complex (GO:0016282), eukaryotic 48S preinitiation complex (GO:0033290), cytoplasm (GO:0005737)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| translational initiation | 3 |
| cytosolic small ribosomal subunit | 2 |
| cytosolic translation preinitiation complex | 2 |
| cytoplasmic translational initiation | 1 |
| protein-RNA complex assembly | 1 |
| formation of translation initiation ternary complex | 1 |
| translation | 1 |
| metabolic process | 1 |
| cytoplasmic translation | 1 |
| peptidyltransferase activity | 1 |
| translational elongation | 1 |
| translational termination | 1 |
| macromolecule biosynthetic process | 1 |
| protein metabolic process | 1 |
| protein biosynthetic process | 1 |
| nucleic acid binding | 1 |
| translation factor activity | 1 |
| protein binding | 1 |
| binding | 1 |
| cytoplasm | 1 |
| protein-containing complex | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1577 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EIF3CL | SOWAHD | A6NJG2 | 518 |
| EIF3CL | EIF3D | O15371 | 507 |
| EIF3CL | TUFM | P49411 | 497 |
| EIF3CL | RABEP2 | Q9H5N1 | 496 |
| EIF3CL | EIF3F | O00303 | 490 |
| EIF3CL | EIF3K | Q9UBQ5 | 458 |
| EIF3CL | EIF2S2 | P20042 | 458 |
| EIF3CL | EIF3M | Q7L2H7 | 458 |
| EIF3CL | EIF3L | Q9Y262 | 457 |
| EIF3CL | EIF3G | O75821 | 454 |
| EIF3CL | NPIPB9 | F8W1W9 | 451 |
| EIF3CL | LRRC47 | Q8N1G4 | 449 |
| EIF3CL | EIF3I | Q13347 | 447 |
| EIF3CL | EIF3J | O75822 | 443 |
| EIF3CL | EIF3A | Q14152 | 443 |
IntAct
66 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| EIF3CL | EIF3H | psi-mi:“MI:0915”(physical association) | 0.670 |
| EIF3H | EIF3CL | psi-mi:“MI:0914”(association) | 0.670 |
| EIF3F | EIF3CL | psi-mi:“MI:0914”(association) | 0.640 |
| EIF3I | EIF3CL | psi-mi:“MI:0914”(association) | 0.640 |
| EIF3M | EIF3CL | psi-mi:“MI:0914”(association) | 0.640 |
| EIF3E | EIF3CL | psi-mi:“MI:0914”(association) | 0.530 |
| EIF3L | EIF3CL | psi-mi:“MI:0914”(association) | 0.530 |
| EIF3CL | H1-5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| STK4 | EIF3CL | psi-mi:“MI:0914”(association) | 0.350 |
| OCRL | EIF3CL | psi-mi:“MI:0914”(association) | 0.350 |
| LRRK2 | psi-mi:“MI:0914”(association) | 0.350 | |
| RAB5A | EIF3CL | psi-mi:“MI:0914”(association) | 0.350 |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| BMI1 | HMGB1P1 | psi-mi:“MI:0914”(association) | 0.350 |
| BMI1 | MEIS3P1 | psi-mi:“MI:0914”(association) | 0.350 |
| RAF1 | EIF3CL | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (156): EIF3CL (Affinity Capture-MS), EIF3CL (Affinity Capture-MS), EIF3CL (Affinity Capture-MS), EIF3CL (Affinity Capture-MS), EIF3B (Co-fractionation), EIF3CL (Co-fractionation), EIF3CL (Co-fractionation), EIF3CL (Co-fractionation), EIF3CL (Co-fractionation), EIF3CL (Co-fractionation), EIF3CL (Co-fractionation), EIF3CL (Co-fractionation), EIF3D (Co-fractionation), EIF3G (Co-fractionation), EIF3CL (Affinity Capture-MS)
ESM2 similar proteins: A0A8I3P7X4, A7S641, A8WG88, A9ULY7, B0R034, B0W6N3, B5DFC8, B5ME19, D6WIX5, E7EXT2, F7AEX0, O60308, O95202, P0C204, P45433, P53569, Q03701, Q0VA06, Q173M7, Q1L987, Q28HX4, Q3SYW6, Q3ZC50, Q4QR58, Q5RAT8, Q5RCI4, Q5U2X6, Q5XGZ8, Q5XIN6, Q5ZK33, Q66I12, Q6AZI2, Q6IVW0, Q6P1V4, Q6PFQ2, Q6PGY6, Q7PGE8, Q7SYB2, Q8BZN6, Q8R1B4
Diamond homologs: A1C987, A1D9P1, A1ZAX1, A3GGB4, A4QSX4, A5DPQ5, A5E3Q2, A6S043, A6ZN26, A7E471, A7TML4, A8WWU0, B0W0S3, B0YEH1, B3MIF1, B3NML0, B4GIB1, B4HMY3, B4J789, B4KN00, B4LNA1, B4MRZ8, B4P562, B5DFC8, B5ME19, O02328, O14164, O49160, P0CN46, P0CN47, P32497, Q0CVT0, Q0V1H5, Q0ZB76, Q17Q06, Q1DP77, Q28Z41, Q2H731, Q2U0Q9, Q3SYW6
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 55 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Formation of the ternary complex, and subsequently, the 43S complex | 11 | 56.4× | 3e-15 |
| Ribosomal scanning and start codon recognition | 12 | 54.4× | 3e-16 |
| Translation initiation complex formation | 11 | 49.9× | 6e-15 |
| GTP hydrolysis and joining of the 60S ribosomal subunit | 13 | 31.0× | 6e-15 |
| Formation of a pool of free 40S subunits | 11 | 29.3× | 2e-12 |
| L13a-mediated translational silencing of Ceruloplasmin expression | 12 | 28.9× | 2e-13 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| formation of cytoplasmic translation initiation complex | 11 | 247.2× | 3e-23 |
| translational initiation | 11 | 78.9× | 2e-16 |
| regulation of translational initiation | 6 | 56.2× | 1e-07 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
12 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 12 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2521 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 16:28379881:C:CC | acceptor_gain | 1.0000 |
| 16:28379883:G:C | acceptor_gain | 1.0000 |
| 16:28379894:A:AC | acceptor_gain | 1.0000 |
| 16:28379894:A:C | acceptor_gain | 1.0000 |
| 16:28379972:TCA:T | donor_loss | 1.0000 |
| 16:28379973:CACC:C | donor_loss | 1.0000 |
| 16:28379974:A:AC | donor_gain | 1.0000 |
| 16:28379974:AC:A | donor_gain | 1.0000 |
| 16:28379974:ACCT:A | donor_gain | 1.0000 |
| 16:28379975:C:CA | donor_gain | 1.0000 |
| 16:28379975:CC:C | donor_gain | 1.0000 |
| 16:28379975:CCT:C | donor_gain | 1.0000 |
| 16:28379975:CCTC:C | donor_gain | 1.0000 |
| 16:28379975:CCTCG:C | donor_gain | 1.0000 |
| 16:28380134:GAGGC:G | acceptor_gain | 1.0000 |
| 16:28380135:AGGC:A | acceptor_gain | 1.0000 |
| 16:28380136:GGC:G | acceptor_gain | 1.0000 |
| 16:28380137:GC:G | acceptor_gain | 1.0000 |
| 16:28380138:CC:C | acceptor_gain | 1.0000 |
| 16:28380139:C:CA | acceptor_loss | 1.0000 |
| 16:28380139:C:CC | acceptor_gain | 1.0000 |
| 16:28380139:C:T | acceptor_gain | 1.0000 |
| 16:28380140:T:A | acceptor_loss | 1.0000 |
| 16:28380144:A:T | acceptor_gain | 1.0000 |
| 16:28380147:C:CT | acceptor_gain | 1.0000 |
| 16:28380150:C:CT | acceptor_gain | 1.0000 |
| 16:28380150:C:T | acceptor_gain | 1.0000 |
| 16:28380151:A:T | acceptor_gain | 1.0000 |
| 16:28380155:C:CT | acceptor_gain | 1.0000 |
| 16:28380156:A:T | acceptor_gain | 1.0000 |
AlphaMissense
6072 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 16:28380501:A:G | L793P | 1.000 |
| 16:28380513:A:G | L789P | 1.000 |
| 16:28380676:C:A | W767C | 1.000 |
| 16:28380676:C:G | W767C | 1.000 |
| 16:28380677:C:G | W767S | 1.000 |
| 16:28380678:A:G | W767R | 1.000 |
| 16:28380678:A:T | W767R | 1.000 |
| 16:28380718:A:C | C753W | 1.000 |
| 16:28380719:C:T | C753Y | 1.000 |
| 16:28380729:A:G | W750R | 1.000 |
| 16:28380729:A:T | W750R | 1.000 |
| 16:28380753:A:G | S742P | 1.000 |
| 16:28380755:G:T | A741D | 1.000 |
| 16:28380756:C:G | A741P | 1.000 |
| 16:28383147:A:G | L719P | 1.000 |
| 16:28383158:G:C | F715L | 1.000 |
| 16:28383158:G:T | F715L | 1.000 |
| 16:28383159:A:C | F715C | 1.000 |
| 16:28383159:A:G | F715S | 1.000 |
| 16:28383160:A:G | F715L | 1.000 |
| 16:28383164:C:A | K713N | 1.000 |
| 16:28383164:C:G | K713N | 1.000 |
| 16:28383166:T:C | K713E | 1.000 |
| 16:28383167:G:C | S712R | 1.000 |
| 16:28383167:G:T | S712R | 1.000 |
| 16:28383169:T:G | S712R | 1.000 |
| 16:28383220:C:T | E695K | 1.000 |
| 16:28383225:A:G | L693P | 1.000 |
| 16:28383231:G:T | A691D | 1.000 |
| 16:28383232:C:G | A691P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000148590 (16:28382489 CCA>C), RS1000410100 (16:28428286 G>A,C), RS1000560068 (16:28412119 G>A), RS1000592727 (16:28411315 T>A), RS1000840889 (16:28427512 T>G), RS1001908574 (16:28427172 C>T), RS1001925069 (16:28426801 G>A), RS1002105067 (16:28410910 G>A), RS1002268117 (16:28410580 G>A), RS1002867940 (16:28396872 C>G), RS1002900237 (16:28423134 C>G,T), RS1002928103 (16:28422570 A>C), RS1003494382 (16:28402451 G>A,T), RS1004361407 (16:28413085 T>C), RS1004969234 (16:28379082 C>G,T)
Disease associations
OMIM: gene `` | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002598_62 | Educational attainment | 1.000000e-06 |
| GCST004131_83 | Inflammatory bowel disease | 2.000000e-12 |
| GCST004132_69 | Crohn’s disease | 3.000000e-10 |
| GCST010133_15 | Lamb consumption | 3.000000e-08 |
| GCST010703_152 | Brain morphology (MOSTest) | 3.000000e-09 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004784 | self reported educational attainment |
| EFO:0008111 | diet measurement |
| EFO:0004346 | neuroimaging measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
20 total (human), top 20 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Diethylhexyl Phthalate | affects cotreatment, affects expression, increases expression | 2 |
| bisphenol A | decreases expression | 1 |
| lead acetate | decreases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects localization, increases expression, affects cotreatment, decreases expression | 1 |
| tetrachlorodian | increases expression | 1 |
| abrine | increases expression | 1 |
| theaflavin-3,3’-digallate | affects expression | 1 |
| Benztropine | affects cotreatment, decreases expression | 1 |
| Cuprizone | affects cotreatment, decreases expression | 1 |
| Dimethyl Sulfoxide | increases expression | 1 |
| Doxorubicin | increases expression | 1 |
| Colforsin | affects cotreatment, affects expression | 1 |
| Furaldehyde | affects cotreatment, decreases expression, affects localization, increases expression | 1 |
| Smoke | decreases expression | 1 |
| Sodium Chloride | affects cotreatment, decreases expression, affects localization, increases expression | 1 |
| Tetrachlorodibenzodioxin | decreases expression | 1 |
| Tobacco Smoke Pollution | affects expression | 1 |
| Valproic Acid | decreases expression | 1 |
| Cyclosporine | increases methylation | 1 |
| Aflatoxin M1 | increases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.