EIF4E3
gene geneOn this page
Also known as MGC39820
Summary
EIF4E3 (eukaryotic translation initiation factor 4E family member 3, HGNC:31837) is a protein-coding gene on chromosome 3p13, encoding Eukaryotic translation initiation factor 4E type 3 (Q8N5X7). Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis.
EIF4E3 belongs to the EIF4E family of translational initiation factors that interact with the 5-prime cap structure of mRNA and recruit mRNA to the ribosome (Joshi et al., 2004 [PubMed 15153109]).
Source: NCBI Gene 317649 — RefSeq curated summary.
At a glance
- GWAS associations: 16
- Clinical variants (ClinVar): 86 total — 2 pathogenic
- MANE Select transcript:
NM_001134651
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:31837 |
| Approved symbol | EIF4E3 |
| Name | eukaryotic translation initiation factor 4E family member 3 |
| Location | 3p13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC39820 |
| Ensembl gene | ENSG00000163412 |
| Ensembl biotype | protein_coding |
| OMIM | 609896 |
| Entrez | 317649 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 10 protein_coding, 2 protein_coding_CDS_not_defined
ENST00000295612, ENST00000389826, ENST00000421769, ENST00000425534, ENST00000448225, ENST00000468147, ENST00000469524, ENST00000481525, ENST00000496214, ENST00000497838, ENST00000859497, ENST00000948192
RefSeq mRNA: 5 — MANE Select: NM_001134651
NM_001134649, NM_001134650, NM_001134651, NM_001282886, NM_173359
CCDS: CCDS33786, CCDS46867
Canonical transcript exons
ENST00000425534 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001252440 | 71696460 | 71696520 |
| ENSE00001746209 | 71725192 | 71725402 |
| ENSE00001858849 | 71675414 | 71684728 |
| ENSE00003535120 | 71710412 | 71710484 |
| ENSE00003577786 | 71699614 | 71699708 |
| ENSE00003685646 | 71690010 | 71690165 |
| ENSE00003785554 | 71693875 | 71693941 |
Expression profiles
Bgee: expression breadth ubiquitous, 259 present calls, max score 96.74.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 10.1634 / max 475.9939, expressed in 1496 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 43095 | 9.0212 | 1471 |
| 43101 | 0.4708 | 261 |
| 43100 | 0.2370 | 93 |
| 43097 | 0.1178 | 61 |
| 43102 | 0.1068 | 60 |
| 43098 | 0.1061 | 60 |
| 43103 | 0.0759 | 41 |
| 43096 | 0.0278 | 19 |
Top tissues by expression
260 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| buccal mucosa cell | CL:0002336 | 96.74 | gold quality |
| tibialis anterior | UBERON:0001385 | 96.08 | gold quality |
| deltoid | UBERON:0001476 | 95.39 | gold quality |
| ileal mucosa | UBERON:0000331 | 95.17 | gold quality |
| monocyte | CL:0000576 | 94.81 | gold quality |
| leukocyte | CL:0000738 | 94.59 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 94.44 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 93.54 | gold quality |
| quadriceps femoris | UBERON:0001377 | 93.54 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 93.23 | gold quality |
| muscle of leg | UBERON:0001383 | 93.17 | gold quality |
| gastrocnemius | UBERON:0001388 | 93.17 | gold quality |
| vastus lateralis | UBERON:0001379 | 93.10 | gold quality |
| biceps brachii | UBERON:0001507 | 92.69 | gold quality |
| muscle tissue | UBERON:0002385 | 92.55 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 92.55 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 92.51 | gold quality |
| secondary oocyte | CL:0000655 | 92.50 | gold quality |
| blood | UBERON:0000178 | 92.23 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 92.12 | gold quality |
| myocardium | UBERON:0002349 | 91.27 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 91.24 | gold quality |
| bone marrow | UBERON:0002371 | 90.12 | gold quality |
| bone marrow cell | CL:0002092 | 90.09 | gold quality |
| prefrontal cortex | UBERON:0000451 | 89.75 | gold quality |
| colonic epithelium | UBERON:0000397 | 89.66 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 89.49 | gold quality |
| parotid gland | UBERON:0001831 | 89.40 | gold quality |
| calcaneal tendon | UBERON:0003701 | 89.05 | gold quality |
| islet of Langerhans | UBERON:0000006 | 88.97 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
210 targeting EIF4E3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-3617-3P | 99.98 | 67.86 | 918 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
Literature-anchored findings (GeneRIF, showing 6)
- eIF4E3 impedes oncogenic transformation and its expression is lost in some cancers. (PMID:23587918)
- MNK1 and MNK2 inhibition ablates eIF4E1 phosphorylation and concurrently enhances eIF4E3 expression in diffuse large B-cell lymphoma. (PMID:25403230)
- Following heat shock, eIF4E2 is found in both processing bodies and stress granules, whereas eIF4E3_A relocates only to stress granules. (PMID:27578149)
- We performed bioinformatics analyses of ESTs and the 3’UTRs of the main transcript splice variants of the translational initiation factor eIF4E1 and its family members, eIF4E2 and eIF4E3. We propose to elucidate the minor splice variants of eIF4E2 and eIF4E3 in great detail because they might produce proteins with modified features that fulfill different cellular roles from their major counterparts. (PMID:28942592)
- eIF4E3 forms an active eIF4F complex during stresses (eIF4FS) targeting mTOR and re-programs the translatome. (PMID:33893802)
- m7G-related genes-NCBP2 and EIF4E3 determine immune contexture in head and neck squamous cell carcinoma by regulating CCL4/CCL5 expression. (PMID:37067401)
Cross-species orthologs
13 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | eif4e3 | ENSDARG00000005078 |
| mus_musculus | Eif4e3 | ENSMUSG00000093661 |
| rattus_norvegicus | Eif4e3 | ENSRNOG00000010301 |
| drosophila_melanogaster | eIF4E1 | FBGN0015218 |
| drosophila_melanogaster | eIF4E4 | FBGN0035709 |
| drosophila_melanogaster | eIF4E5 | FBGN0035823 |
| drosophila_melanogaster | eIF4E6 | FBGN0039622 |
| drosophila_melanogaster | eIF4E7 | FBGN0040368 |
| drosophila_melanogaster | eIF4EHP | FBGN0053100 |
| drosophila_melanogaster | eIF4E3 | FBGN0265089 |
| caenorhabditis_elegans | WBGENE00002059 | |
| caenorhabditis_elegans | WBGENE00002062 | |
| caenorhabditis_elegans | WBGENE00002063 |
Paralogs (3): EIF4E2 (ENSG00000135930), EIF4E (ENSG00000151247), EIF4E1B (ENSG00000175766)
Protein
Protein identifiers
Eukaryotic translation initiation factor 4E type 3 — Q8N5X7 (reviewed: Q8N5X7)
All UniProt accessions (4): C9J6E5, C9J7Z6, C9JUY2, Q8N5X7
UniProt curated annotations — full annotation on UniProt →
Function. Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis. May act as an inhibitor of EIF4E1 activity.
Subunit / interactions. eIF4F is a multi-subunit complex, the composition of which varies with external and internal environmental conditions. It is composed of at least eIF4A, eIF4E and eIF4G. EIF4E3 interacts with EIF4G1, but not with EIF4EBP1, EIF4EBP2 and EIF4EBP3.
Similarity. Belongs to the eukaryotic initiation factor 4E family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8N5X7-1 | 1 | yes |
| Q8N5X7-2 | 2 |
RefSeq proteins (5): NP_001128121, NP_001128122, NP_001128123, NP_001269815, NP_775495 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001040 | TIF_eIF_4E | Family |
| IPR023398 | TIF_eIF4e-like | Homologous_superfamily |
Pfam: PF01652
UniProt features (6 total): binding site 2, chain 1, region of interest 1, compositionally biased region 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8N5X7-F1 | 80.02 | 0.41 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (2): 115–116; 169–174
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-1169408 | ISG15 antiviral mechanism |
| R-HSA-9918487 | Dengue Virus Genome Translation and Replication |
MSigDB gene sets: 188 (showing top):
BENPORATH_ES_WITH_H3K27ME3, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, GOBP_TRANSLATIONAL_INITIATION, GOMF_TRANSLATION_INITIATION_FACTOR_ACTIVITY, BEIER_GLIOMA_STEM_CELL_DN, GOBP_TRANSLATION, GOBP_POST_TRANSCRIPTIONAL_REGULATION_OF_GENE_EXPRESSION, GGGCATT_MIR365, chr3p13, ATTCTTT_MIR186, ATGCTGG_MIR338, ACTTTAT_MIR1425P, DOUGLAS_BMI1_TARGETS_UP
GO Biological Process (3): translational initiation (GO:0006413), regulation of translation (GO:0006417), translation (GO:0006412)
GO Molecular Function (4): RNA 7-methylguanosine cap binding (GO:0000340), translation initiation factor activity (GO:0003743), RNA binding (GO:0003723), protein binding (GO:0005515)
GO Cellular Component (2): cytosol (GO:0005829), eukaryotic translation initiation factor 4F complex (GO:0016281)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Antimicrobial mechanism of IFN-stimulated genes | 1 |
| Dengue Virus Infection | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| translation | 2 |
| translational initiation | 2 |
| cytoplasm | 2 |
| formation of translation initiation ternary complex | 1 |
| metabolic process | 1 |
| post-transcriptional regulation of gene expression | 1 |
| regulation of protein metabolic process | 1 |
| peptidyltransferase activity | 1 |
| translational elongation | 1 |
| translational termination | 1 |
| macromolecule biosynthetic process | 1 |
| protein metabolic process | 1 |
| protein biosynthetic process | 1 |
| RNA cap binding | 1 |
| translation factor activity | 1 |
| nucleic acid binding | 1 |
| binding | 1 |
| cellular anatomical structure | 1 |
| RNA cap binding complex | 1 |
Protein interactions and networks
STRING
2076 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EIF4E3 | EIF4G1 | Q04637 | 915 |
| EIF4E3 | EIF4A1 | P04765 | 830 |
| EIF4E3 | EIF4G3 | O43432 | 785 |
| EIF4E3 | EIF4EBP1 | Q13541 | 721 |
| EIF4E3 | YTHDF1 | Q9BYJ9 | 685 |
| EIF4E3 | EIF3D | O15371 | 660 |
| EIF4E3 | EIF5B | O60841 | 603 |
| EIF4E3 | GPR27 | Q9NS67 | 580 |
| EIF4E3 | PABPN1 | Q86U42 | 574 |
| EIF4E3 | EIF4EBP2 | Q13542 | 535 |
| EIF4E3 | MAGOH | P50606 | 517 |
| EIF4E3 | MAGOHB | Q96A72 | 513 |
| EIF4E3 | EIF4E2 | O60573 | 502 |
| EIF4E3 | CASC3 | O15234 | 473 |
| EIF4E3 | EIF4G2 | P78344 | 463 |
IntAct
8 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| DCC | NTN1 | psi-mi:“MI:0914”(association) | 0.700 |
| EIF4A1 | EIF3D | psi-mi:“MI:0914”(association) | 0.530 |
| BMP2K | EIF4E3 | psi-mi:“MI:0915”(physical association) | 0.490 |
| CFTR | EIF4E3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| EIF4E3 | TBC1D4 | psi-mi:“MI:0914”(association) | 0.350 |
| EIF4E3 | fliP | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (17): TBC1D4 (Affinity Capture-MS), THEMIS2 (Affinity Capture-MS), EIF4E3 (Synthetic Lethality), THEMIS2 (Affinity Capture-MS), TBC1D4 (Affinity Capture-MS), EIF4E3 (Affinity Capture-MS), EIF4E3 (Two-hybrid), EIF4E3 (Affinity Capture-MS), THEMIS2 (Affinity Capture-MS), TBC1D4 (Affinity Capture-MS), EIF4E3 (PCA), CTNNB1 (Affinity Capture-RNA), EIF4E3 (Affinity Capture-Western), EIF4E3 (Affinity Capture-Western), EIF4E3 (Affinity Capture-Western)
ESM2 similar proteins: A0JN27, A0PJN4, A1L167, A1L3K1, A2ADY9, B5DFI8, C1C3R6, D3Z7P3, G3MWR8, O43741, O88508, O94925, P13264, Q07G17, Q12800, Q13888, Q16763, Q1LZ53, Q1RML1, Q28D01, Q28F89, Q2KJ29, Q2TBV5, Q3MHJ2, Q4R9A8, Q4W5Z4, Q5NVP9, Q5R532, Q5RBN9, Q5SP67, Q5TDH0, Q66H54, Q6AYU1, Q6P1K8, Q6PAM0, Q76EZ2, Q7L5Y9, Q7RTP6, Q86TJ2, Q8AVU2
Diamond homologs: A0A075QQ08, A0A1D8EJF9, A0A1U8F5V2, A0A1U8GR65, A0A2J6L8Y7, A0A3Q7FGP1, A0A3Q7I7R4, A0A445AGS0, A3RCV9, A6NMX2, A7KWF8, C6ZJZ3, C7SG33, D3UW26, K0P2S0, M1J8U6, M1JJT8, O04663, O23252, O45551, O60573, O61955, O74743, O77210, O81481, O81482, P06730, P07260, P0DXI0, P0DXI5, P29338, P29557, P48597, P48598, P48599, P48600, P56570, P63073, P63074, P78954
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
86 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 0 |
| Uncertain significance | 70 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 148629 | GRCh38/hg38 3p13(chr3:70943620-71861889)x1 | Pathogenic |
| 3062672 | GRCh37/hg19 3p13(chr3:70583776-72793789)x1 | Pathogenic |
SpliceAI
1204 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:71690003:CACTT:C | donor_loss | 1.0000 |
| 3:71690004:ACTTA:A | donor_loss | 1.0000 |
| 3:71690005:CTTA:C | donor_loss | 1.0000 |
| 3:71690006:TTA:T | donor_loss | 1.0000 |
| 3:71690007:T:TC | donor_loss | 1.0000 |
| 3:71690008:A:AC | donor_gain | 1.0000 |
| 3:71690008:ACGTT:A | donor_loss | 1.0000 |
| 3:71690009:C:A | donor_loss | 1.0000 |
| 3:71690009:C:CG | donor_gain | 1.0000 |
| 3:71690009:CG:C | donor_gain | 1.0000 |
| 3:71690009:CGT:C | donor_gain | 1.0000 |
| 3:71690009:CGTT:C | donor_gain | 1.0000 |
| 3:71690009:CGTTT:C | donor_gain | 1.0000 |
| 3:71690162:TCAT:T | acceptor_gain | 1.0000 |
| 3:71690163:CAT:C | acceptor_gain | 1.0000 |
| 3:71690163:CATC:C | acceptor_gain | 1.0000 |
| 3:71690164:AT:A | acceptor_gain | 1.0000 |
| 3:71690165:TC:T | acceptor_loss | 1.0000 |
| 3:71690166:C:CC | acceptor_gain | 1.0000 |
| 3:71690166:CT:C | acceptor_loss | 1.0000 |
| 3:71710501:A:T | acceptor_gain | 1.0000 |
| 3:71690161:ATCAT:A | acceptor_gain | 0.9900 |
| 3:71690178:C:CT | acceptor_gain | 0.9900 |
| 3:71690179:A:T | acceptor_gain | 0.9900 |
| 3:71691706:A:C | acceptor_gain | 0.9900 |
| 3:71691708:T:C | acceptor_gain | 0.9900 |
| 3:71693947:A:C | acceptor_gain | 0.9900 |
| 3:71710500:C:CT | acceptor_gain | 0.9900 |
| 3:71710505:C:CT | acceptor_gain | 0.9900 |
| 3:71725186:CCTCA:C | donor_loss | 0.9900 |
AlphaMissense
1437 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:71690106:A:G | W178R | 0.999 |
| 3:71690106:A:T | W178R | 0.999 |
| 3:71690143:A:C | S165R | 0.999 |
| 3:71690143:A:T | S165R | 0.999 |
| 3:71690145:T:G | S165R | 0.999 |
| 3:71693932:A:G | W139R | 0.999 |
| 3:71693932:A:T | W139R | 0.999 |
| 3:71684706:A:C | F217L | 0.998 |
| 3:71684706:A:T | F217L | 0.998 |
| 3:71684708:A:G | F217L | 0.998 |
| 3:71690114:A:T | V175D | 0.998 |
| 3:71690141:A:T | V166D | 0.998 |
| 3:71690150:C:T | G163E | 0.998 |
| 3:71696489:A:G | W126R | 0.998 |
| 3:71696489:A:T | W126R | 0.998 |
| 3:71696520:C:A | W115C | 0.998 |
| 3:71696520:C:G | W115C | 0.998 |
| 3:71699648:A:C | Y104D | 0.998 |
| 3:71699702:A:G | W86R | 0.998 |
| 3:71699702:A:T | W86R | 0.998 |
| 3:71690011:T:A | K209N | 0.997 |
| 3:71690011:T:G | K209N | 0.997 |
| 3:71690016:A:C | Y208D | 0.997 |
| 3:71690017:A:C | F207L | 0.997 |
| 3:71690017:A:T | F207L | 0.997 |
| 3:71690019:A:G | F207L | 0.997 |
| 3:71690104:C:A | W178C | 0.997 |
| 3:71690104:C:G | W178C | 0.997 |
| 3:71690108:A:T | V177D | 0.997 |
| 3:71690137:A:C | S167R | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000025866 (3:71728605 G>C), RS1000123616 (3:71696861 G>A), RS1000135104 (3:71720463 G>A), RS1000166597 (3:71721575 T>C), RS1000190302 (3:71712012 C>T), RS1000208414 (3:71725680 T>C), RS1000236470 (3:71755752 G>A), RS1000239523 (3:71726018 G>A), RS1000327646 (3:71723500 A>G), RS1000345851 (3:71739029 A>G), RS1000361277 (3:71674570 G>A), RS1000373700 (3:71678731 T>C), RS1000377169 (3:71717437 C>A,T), RS1000383922 (3:71698935 T>C), RS1000401981 (3:71720356 C>T)
Disease associations
OMIM: gene MIM:609896 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
16 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003999_1 | Nose size | 8.000000e-26 |
| GCST004608_77 | Granulocyte percentage of myeloid white cells | 1.000000e-11 |
| GCST004609_113 | Monocyte percentage of white cells | 2.000000e-14 |
| GCST007576_379 | Chronotype | 1.000000e-08 |
| GCST007576_69 | Chronotype | 6.000000e-12 |
| GCST008114_21 | Type 2 diabetes | 5.000000e-06 |
| GCST009066_5 | Mosaic loss of chromosome Y (Y chromosome dosage) | 2.000000e-09 |
| GCST009067_7 | Mosaic loss of chromosome Y (Y chromosome dosage) | 1.000000e-24 |
| GCST009391_1118 | Metabolite levels | 1.000000e-06 |
| GCST009391_150 | Metabolite levels | 3.000000e-06 |
| GCST009391_983 | Metabolite levels | 9.000000e-06 |
| GCST010148_5 | Cutaneous squamous cell carcinoma | 2.000000e-09 |
| GCST010241_367 | Apolipoprotein A1 levels | 8.000000e-11 |
| GCST010242_46 | HDL cholesterol levels | 8.000000e-15 |
| GCST90002393_240 | Monocyte count | 3.000000e-16 |
| GCST90002394_246 | Monocyte percentage of white cells | 9.000000e-24 |
EFO canonical traits (11, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007997 | granulocyte percentage of myeloid white cells |
| EFO:0007989 | monocyte percentage of leukocytes |
| EFO:0008328 | chronotype measurement |
| EFO:0007783 | mosaic loss of chromosome Y measurement |
| EFO:0010523 | phosphoglyceric acid measurement |
| EFO:0010476 | dimethylglycine measurement |
| EFO:0010538 | taurocholate measurement |
| EFO:1001927 | cutaneous squamous cell carcinoma |
| EFO:0004614 | apolipoprotein A 1 measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0005091 | monocyte count |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
36 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, affects expression, increases expression | 5 |
| trichostatin A | affects cotreatment, decreases expression | 3 |
| mercuric bromide | decreases expression, affects cotreatment | 2 |
| Panobinostat | affects cotreatment, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| p-Chloromercuribenzoic Acid | decreases expression, affects cotreatment | 2 |
| aristolochic acid I | decreases expression | 1 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | increases methylation, affects cotreatment | 1 |
| sodium arsenate | increases abundance, decreases expression | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| sulforaphane | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| nickel chloride | affects cotreatment, increases expression | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | decreases expression, affects cotreatment | 1 |
| trametinib | affects cotreatment, decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| NVP-BKM120 | affects cotreatment, decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Air Pollutants | increases abundance, decreases expression | 1 |
| Arsenic | decreases expression, increases abundance | 1 |
| Benzo(a)pyrene | decreases methylation, increases methylation | 1 |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_IN95 | HLY-1 eIF4E3 | Cancer cell line | Sex unspecified |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.