EIF4EBP1
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Also known as PHAS-I4E-BP1
Summary
EIF4EBP1 (eukaryotic translation initiation factor 4E binding protein 1, HGNC:3288) is a protein-coding gene on chromosome 8p11.23, encoding Eukaryotic translation initiation factor 4E-binding protein 1 (Q13541). Repressor of translation initiation that regulates EIF4E activity by preventing its assembly into the eIF4F complex: hypophosphorylated form competes with EIF4G1/EIF4G3 and strongly binds to EIF4E, leading to repress translation. In precision oncology, EIF4EBP1 PHOSPHORYLATION confers sensitivity to Everolimus in Gastric Adenocarcinoma (CIViC Level D); 1 further curated variant–drug associations are listed below.
This gene encodes one member of a family of translation repressor proteins. The protein directly interacts with eukaryotic translation initiation factor 4E (eIF4E), which is a limiting component of the multisubunit complex that recruits 40S ribosomal subunits to the 5’ end of mRNAs. Interaction of this protein with eIF4E inhibits complex assembly and represses translation. This protein is phosphorylated in response to various signals including UV irradiation and insulin signaling, resulting in its dissociation from eIF4E and activation of mRNA translation.
Source: NCBI Gene 1978 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 22 total — 1 pathogenic
- Druggable target: yes
- Precision-oncology evidence (CIViC): 2 curated variant–drug associations
- MANE Select transcript:
NM_004095
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3288 |
| Approved symbol | EIF4EBP1 |
| Name | eukaryotic translation initiation factor 4E binding protein 1 |
| Location | 8p11.23 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | PHAS-I, 4E-BP1 |
| Ensembl gene | ENSG00000187840 |
| Ensembl biotype | protein_coding |
| OMIM | 602223 |
| Entrez | 1978 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 2 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000338825, ENST00000520657, ENST00000936832
RefSeq mRNA: 1 — MANE Select: NM_004095
NM_004095
CCDS: CCDS6100
Canonical transcript exons
ENST00000338825 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001381442 | 38030534 | 38030718 |
| ENSE00003460623 | 38057081 | 38057260 |
| ENSE00003505633 | 38059904 | 38060365 |
Expression profiles
Bgee: expression breadth ubiquitous, 251 present calls, max score 99.01.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 108.3449 / max 2934.6064, expressed in 1815 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 88467 | 108.3449 | 1815 |
Top tissues by expression
280 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| body of pancreas | UBERON:0001150 | 99.01 | gold quality |
| parotid gland | UBERON:0001831 | 98.98 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 97.66 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 96.42 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 96.24 | gold quality |
| esophagus mucosa | UBERON:0002469 | 95.90 | gold quality |
| gastrocnemius | UBERON:0001388 | 95.71 | gold quality |
| apex of heart | UBERON:0002098 | 95.62 | gold quality |
| minor salivary gland | UBERON:0001830 | 95.61 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 95.59 | gold quality |
| omental fat pad | UBERON:0010414 | 95.20 | gold quality |
| right lobe of liver | UBERON:0001114 | 95.13 | gold quality |
| peritoneum | UBERON:0002358 | 95.13 | gold quality |
| pancreas | UBERON:0001264 | 95.01 | gold quality |
| stromal cell of endometrium | CL:0002255 | 95.00 | gold quality |
| cortical plate | UBERON:0005343 | 94.99 | gold quality |
| muscle of leg | UBERON:0001383 | 94.92 | gold quality |
| cartilage tissue | UBERON:0002418 | 94.82 | gold quality |
| body of stomach | UBERON:0001161 | 94.78 | gold quality |
| mouth mucosa | UBERON:0003729 | 94.60 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 94.54 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 94.23 | gold quality |
| monocyte | CL:0000576 | 94.08 | gold quality |
| esophagus | UBERON:0001043 | 93.87 | gold quality |
| mononuclear cell | CL:0000842 | 93.66 | gold quality |
| leukocyte | CL:0000738 | 93.49 | gold quality |
| diaphragm | UBERON:0001103 | 93.49 | silver quality |
| right atrium auricular region | UBERON:0006631 | 93.29 | gold quality |
| ganglionic eminence | UBERON:0004023 | 93.26 | gold quality |
| muscle organ | UBERON:0001630 | 92.87 | gold quality |
Single-cell (SCXA)
Detected in 9 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6701 | yes | 56.91 |
| E-MTAB-9067 | yes | 20.55 |
| E-CURD-122 | yes | 18.64 |
| E-MTAB-9388 | no | 1293.51 |
| E-MTAB-7303 | no | 456.92 |
| E-MTAB-10290 | no | 309.75 |
| E-ENAD-20 | no | 292.09 |
| E-MTAB-8271 | no | 6.86 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): FOXO1, HIF1A, MYC, SMAD4
miRNA regulators (miRDB)
44 targeting EIF4EBP1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-6891-5P | 99.98 | 66.53 | 1372 |
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-7978 | 99.86 | 66.90 | 856 |
| HSA-MIR-4319 | 99.76 | 69.83 | 2586 |
| HSA-MIR-3059-5P | 99.70 | 69.93 | 2491 |
| HSA-MIR-3202 | 99.66 | 67.70 | 2737 |
| HSA-MIR-6836-5P | 99.60 | 65.62 | 1538 |
| HSA-MIR-3612 | 99.45 | 66.02 | 1333 |
| HSA-MIR-650 | 99.45 | 65.77 | 1309 |
| HSA-MIR-6722-3P | 99.45 | 67.62 | 1919 |
| HSA-MIR-125A-5P | 99.36 | 70.59 | 1640 |
| HSA-MIR-125B-5P | 99.36 | 70.36 | 1662 |
| HSA-MIR-3692-5P | 99.29 | 67.04 | 1421 |
| HSA-MIR-5582-5P | 99.27 | 71.42 | 1879 |
| HSA-MIR-670-3P | 99.03 | 68.88 | 2404 |
| HSA-MIR-1909-3P | 99.03 | 66.56 | 1662 |
| HSA-MIR-4686 | 98.77 | 66.87 | 964 |
| HSA-MIR-138-5P | 98.43 | 70.49 | 1292 |
| HSA-MIR-93-3P | 98.15 | 66.65 | 1309 |
| HSA-MIR-4443 | 98.02 | 66.25 | 1928 |
| HSA-MIR-7111-3P | 97.80 | 66.75 | 1467 |
Literature-anchored findings (GeneRIF, showing 40)
- 4E-binding proteins, the suppressors of eukaryotic initiation factor 4E, are down-regulated in cells with acquired or intrinsic resistance to rapamycin. (PMID:11847216)
- Translational control of cell fate: availability of phosphorylation sites on translational repressor 4E-BP1 governs its proapoptotic potency. (PMID:11909977)
- Mammalian cell size is controlled by mTOR and its downstream targets S6K1 and 4EBP1/eIF4E (PMID:12080086)
- hamartin and tuberin function together to inhibit mammalian target of rapamycin (mTOR)-mediated signaling to eukaryotic initiation factor 4E-binding protein 1 (4E-BP1) and ribosomal protein S6 kinase 1 (S6K1) (PMID:12271141)
- 4E-binding protein 1 C terminus has domains that control function and phosphorylation (PMID:12588975)
- raptor binds to p70S6k and 4E-BP1 through their respective TOS (conserved TOR signaling) motifs. (PMID:12604610)
- data demonstrates that eukaryotic translation initiation factor 4E binding protein 1 is a new target for early growth response-1 (PMID:12618431)
- 4EBP1 is activated by the Type I IFN receptor-activated PI 3’-kinase pathway and has a role in regulating mRNA translation and induction of Type I IFN responses (PMID:12759354)
- Rheb is a mediator of 4EBP1. (PMID:12820960)
- TOR-signaling and RAIP motifs play distinct roles in the mammalian TOR-dependent phosphorylation of initiation factor 4E-binding protein 1 (PMID:12912989)
- Ser-64 and Ser-111 are not required for the control of PHAS-I binding to eIF4E in cells, implicating phosphorylation of the Thr sites in dissociation of the PHAS-I.eIF4E complex (PMID:14507920)
- 4EHP over-expression instigates a negative feedback loop that inhibits upstream signaling to 4E-BP1 and ribosomal protein S6 kinase 1 (S6K1) whereas the 4E-BP1-binding-deficient mutant of 4EHP(W95A) was unable to trigger this feedback loop (PMID:15094042)
- role as physiological substrates for the protein kinase activity of PI 3-kinase and suggests this activity operates in a physiological context by phosphorylating substrates other than the PI 3-kinase itself (PMID:15178440)
- These findings suggest that hyperoxia diminishes protein synthesis by increasing eIF4E phosphorylation and enhancing the affinity of 4E-BP1 for eIF4E. (PMID:15542544)
- levels of p-mTOR (Ser2481), and p-4E-BP1 (Thr70 and Ser65) dramatically increase in Alzheimer disease, and are positively significantly correlated with total tau and p-tau (PMID:16098202)
- Hypoxia inhibits protein synthesis through a 4EBP1 and EEF2 pathway controlled by mTOR and uncoupled in breast cancer cells. (PMID:16648488)
- eukaryotic translation initiation factor 4E binding protein 1(4E-BP1) overexpression is associated with prostate cancer, especially when combined with phosphatase and tensin homolog(PTEN) and mammalian target of rapamycin(mTOR) expression data (PMID:16652388)
- both ribosomal protein S6 kinase, 70kDa and 4E-BP1 pathways, regulated by TORC1, are required for cell motility (PMID:16715128)
- 4E-BP1, that binds to eukaryotic initiation factor-4E to prevent the formation of the active translation complex, dissociates from eIF4E by phosphorylation through the mammalian target of rapamycin (mTOR) in cells stimulated by amino acids. (PMID:16824195)
- AMPK activation and a reduced phosphorylation of 4E-BP1 may contribute to the inhibition of muscle protein synthesis during resistance exercise. (PMID:16873412)
- In patients with ovarian carcinoma, significant expression of p-4EBP1 was associated with high-grade tumors and a poor prognosis, regardless other oncogenic alterations upstream. (PMID:16983702)
- mTOR-dependent pathways have roles in IFN signaling and 4E-BP1 and TSC1-TSC2 are key components in the generation of IFN-dependent biological responses (PMID:17114181)
- 4E-binding protein 1 has a role in progression of breast neoplasms through cell signaling (PMID:17200342)
- These results demonstrate that “pure” isoprenoids and genistein differentially impact cap-dependent translation in tumor cell lines. (PMID:17601486)
- PRAS40 acts downstream of mTORC1 but upstream of its effectors, such as S6K1 and 4E-BP1 (PMID:17604271)
- The phosphorylation of 4E-BP1 may play a dual role in the regulation of protein synthesis, both reducing the affinity of 4E-BP1 for eIF4E and promoting the conversion of 4E-BP1 to alternative, polyubiquitinated forms. (PMID:17653084)
- Phosphorylated 4E-BP1 (p-4E-BP1) expression in tumors is associated with malignant progression and an adverse prognosis regardless of the upstream oncogenic alterations. (PMID:17699757)
- Key regulator of cyclin D1 expression. (PMID:17724476)
- treatment of acute promyelocytic leukemia (APL)-derived NB4 cells with all-trans-retinoic acid results in dissociation of the translational repressor 4E-BP1 from the eukaryotic initiation factor eIF4E, and subsequent formation of eIF4G-eIF4E complexes. (PMID:18280804)
- CCL5 induced PI-3’K-, phospholipase D-, and mTOR-dependent phosphorylation and deactivation of the transcriptional repressor 4E-BP1, which resulted in its dissociation from eIF4E (PMID:18337562)
- Analysis of the regulatory motifs in EIF4EBP1 was performed. (PMID:18384376)
- SF2/ASF promotes translation initiation of bound mRNAs; this activity requires the presence of the cytoplasmic cap-binding protein eIF4E. (PMID:18439897)
- This study revealed genetic associations of SLC1A4, SQSTM1, and EIF4EBP1 with MSA. These results may lend genetic support to the hypothesis that oxidative stress is associated with the pathogenesis of MSA. (PMID:18442140)
- endocrine hormone insulin contributes to VEGF release in skin wounds through an Akt1-and 4E-BP1- mediated posttranscriptional mechanism in keratinocytes (PMID:18668138)
- chronic inactivation of 4E-BP by LRRK2 with pathogenic mutations deregulates protein translation, eventually resulting in age-dependent loss of DA neurons (PMID:18701920)
- Effects of 4E-BP1 expression on hypoxic cell cycle inhibition and tumor cell proliferation and survival are reported. (PMID:18708753)
- These data show that, in addition to inactivation of 4E-BP1 via hyperphosphorylation, signaling through the PI3K pathway silences 4E-BP1 gene transcription. (PMID:18810319)
- Skeletal muscle eEF2 and 4EBP1 phosphorylation during endurance exercise is dependent on intensity and muscle fiber type. (PMID:19036825)
- Expression of mTOR and 4EBP1 characterize high-grade, high-stage endometrial adenocarcinomas and might be predictive markers of a response to rapamycin. (PMID:19107520)
- PI3K signaling, therefore, plays a critical role in regulating protein production during VV infection, at least in part by controlling the abundance and activity of 4E-BP1. (PMID:19211763)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | eif4ebp1 | ENSDARG00000043608 |
| mus_musculus | Eif4ebp1 | ENSMUSG00000031490 |
| rattus_norvegicus | Eif4ebp1 | ENSRNOG00000081081 |
| drosophila_melanogaster | Thor | FBGN0261560 |
Paralogs (2): EIF4EBP2 (ENSG00000148730), EIF4EBP3 (ENSG00000243056)
Protein
Protein identifiers
Eukaryotic translation initiation factor 4E-binding protein 1 — Q13541 (reviewed: Q13541)
Alternative names: Phosphorylated heat- and acid-stable protein regulated by insulin 1
All UniProt accessions (1): Q13541
UniProt curated annotations — full annotation on UniProt →
Function. Repressor of translation initiation that regulates EIF4E activity by preventing its assembly into the eIF4F complex: hypophosphorylated form competes with EIF4G1/EIF4G3 and strongly binds to EIF4E, leading to repress translation. In contrast, hyperphosphorylated form dissociates from EIF4E, allowing interaction between EIF4G1/EIF4G3 and EIF4E, leading to initiation of translation. Mediates the regulation of protein translation by hormones, growth factors and other stimuli that signal through the MAP kinase and mTORC1 pathways.
Subunit / interactions. Hypophosphorylated EIF4EBP1 competes with EIF4G1/EIF4G3 to interact with EIF4E; insulin stimulated MAP-kinase (MAPK1 and MAPK3) or mTORC1 phosphorylation of EIF4EBP1 causes dissociation of the complex allowing EIF4G1/EIF4G3 to bind and consequent initiation of translation. Interacts (via TOS motif) with RPTOR; promoting phosphorylation by mTORC1.
Subcellular location. Cytoplasm. Nucleus.
Post-translational modifications. Phosphorylated on serine and threonine residues in response to insulin, EGF and PDGF. Phosphorylation at Thr-37, Thr-46, Ser-65 and Thr-70, corresponding to the hyperphosphorylated form, is regulated by mTORC1 and abolishes binding to EIF4E. Ubiquitinated: when eIF4E levels are low, hypophosphorylated form is ubiquitinated by the BCR(KLHL25) complex, leading to its degradation and serving as a homeostatic mechanism to maintain translation and prevent eIF4E inhibition when eIF4E levels are low. Not ubiquitinated when hyperphosphorylated (at Thr-37, Thr-46, Ser-65 and Thr-70) or associated with eIF4E.
Domain organisation. The TOS motif mediates interaction with RPTOR, leading to promote phosphorylation by mTORC1 complex.
Similarity. Belongs to the eIF4E-binding protein family.
RefSeq proteins (1): NP_004086* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR008606 | EIF4EBP | Family |
Pfam: PF05456
UniProt features (38 total): modified residue 14, mutagenesis site 9, region of interest 3, helix 3, compositionally biased region 3, short sequence motif 2, initiator methionine 1, chain 1, cross-link 1, turn 1
Structure
Experimental structures (PDB)
24 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2JGB | X-RAY DIFFRACTION | 1.7 |
| 4UED | X-RAY DIFFRACTION | 1.75 |
| 3HXI | X-RAY DIFFRACTION | 1.8 |
| 5NVN | X-RAY DIFFRACTION | 1.9 |
| 3M94 | X-RAY DIFFRACTION | 2.05 |
| 1WKW | X-RAY DIFFRACTION | 2.1 |
| 2V8Y | X-RAY DIFFRACTION | 2.1 |
| 3HXG | X-RAY DIFFRACTION | 2.1 |
| 3U7X | X-RAY DIFFRACTION | 2.1 |
| 5BXV | X-RAY DIFFRACTION | 2.1 |
| 1EJH | X-RAY DIFFRACTION | 2.2 |
| 1EJ4 | X-RAY DIFFRACTION | 2.25 |
| 2V8W | X-RAY DIFFRACTION | 2.3 |
| 2V8X | X-RAY DIFFRACTION | 2.3 |
| 2JGC | X-RAY DIFFRACTION | 2.4 |
| 3M93 | X-RAY DIFFRACTION | 2.9 |
| 5WBJ | X-RAY DIFFRACTION | 3 |
| 8RCN | ELECTRON MICROSCOPY | 3.1 |
| 6BCX | ELECTRON MICROSCOPY | 3.23 |
| 9ED4 | ELECTRON MICROSCOPY | 3.23 |
| 8RCK | ELECTRON MICROSCOPY | 3.4 |
| 5EKV | X-RAY DIFFRACTION | 3.61 |
| 6BCU | ELECTRON MICROSCOPY | 3.8 |
| 8RCH | ELECTRON MICROSCOPY | 4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q13541-F1 | 71.84 | 0.13 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (15): 2, 37, 41, 44, 46, 50, 54, 65, 70, 77, 83, 96, 101, 112, 57
Mutagenesis-validated functional residues (9):
| Position | Phenotype |
|---|---|
| 37 | abolishes phosphorylation by mtor and increased ubiquitination by the bcr(klhl25) complex; when associated with a-46; a- |
| 46 | abolishes phosphorylation by mtor and increased ubiquitination by the bcr(klhl25) complex; when associated with a-37; a- |
| 57 | impaired ubiquitination by the bcr(klhl25) complex. |
| 59–60 | abolishes eif4e-binding. increased ubiquitination by the bcr(klhl25) complex. |
| 65 | abolishes phosphorylation by mtor and increased ubiquitination by the bcr(klhl25) complex; when associated with a-37; a- |
| 69 | does not affect ubiquitination by the bcr(klhl25) complex. |
| 70 | abolishes phosphorylation by mtor and increased ubiquitination by the bcr(klhl25) complex; when associated with a-37; a- |
| 105 | does not affect ubiquitination by the bcr(klhl25) complex. |
| 113 | reduced interaction with rptor. |
Function
Pathways and Gene Ontology
Reactome pathways
8 pathways
| ID | Pathway |
|---|---|
| R-HSA-166208 | mTORC1-mediated signalling |
| R-HSA-72662 | Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S |
| R-HSA-162582 | Signal Transduction |
| R-HSA-165159 | MTOR signalling |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-72613 | Eukaryotic Translation Initiation |
| R-HSA-72737 | Cap-dependent Translation Initiation |
| R-HSA-72766 | Translation |
MSigDB gene sets: 285 (showing top):
GSE37336_LY6C_POS_VS_NEG_NAIVE_CD4_TCELL_DN, GSE18804_SPLEEN_MACROPHAGE_VS_BRAIN_TUMORAL_MACROPHAGE_DN, GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_DN, TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_MONOCYTE_UP, MODULE_52, RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP, RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP, ATACCTC_MIR202, GOBP_CELL_CYCLE_PHASE_TRANSITION, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GOBP_POSITIVE_REGULATION_OF_MITOTIC_CELL_CYCLE, DACOSTA_UV_RESPONSE_VIA_ERCC3_UP, GOBP_TRANSLATIONAL_INITIATION, MODULE_16, GGGTGGRR_PAX4_03
GO Biological Process (6): G1/S transition of mitotic cell cycle (GO:0000082), negative regulation of translation (GO:0017148), TOR signaling (GO:0031929), positive regulation of mitotic cell cycle (GO:0045931), negative regulation of translational initiation (GO:0045947), regulation of translation (GO:0006417)
GO Molecular Function (4): eukaryotic initiation factor 4E binding (GO:0008190), translation repressor activity (GO:0030371), translation initiation factor binding (GO:0031369), protein binding (GO:0005515)
GO Cellular Component (3): nucleus (GO:0005634), cytosol (GO:0005829), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-6 pathways:
| Category | Pathways |
|---|---|
| MTOR signalling | 1 |
| Cap-dependent Translation Initiation | 1 |
| Signal Transduction | 1 |
| Translation | 1 |
| Eukaryotic Translation Initiation | 1 |
| Metabolism of proteins | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| mitotic cell cycle | 2 |
| translation | 2 |
| negative regulation of translation | 2 |
| cellular anatomical structure | 2 |
| mitotic cell cycle phase transition | 1 |
| cell cycle G1/S phase transition | 1 |
| regulation of translation | 1 |
| negative regulation of gene expression | 1 |
| negative regulation of protein metabolic process | 1 |
| intracellular signal transduction | 1 |
| regulation of mitotic cell cycle | 1 |
| positive regulation of cell cycle | 1 |
| translational initiation | 1 |
| regulation of translational initiation | 1 |
| post-transcriptional regulation of gene expression | 1 |
| regulation of protein metabolic process | 1 |
| translation initiation factor binding | 1 |
| translation regulator activity | 1 |
| protein binding | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| cytoplasm | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
1862 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EIF4EBP1 | EIF4E | P06730 | 999 |
| EIF4EBP1 | RPTOR | Q8N122 | 997 |
| EIF4EBP1 | EIF4G1 | Q04637 | 980 |
| EIF4EBP1 | RPS6KB1 | P23443 | 972 |
| EIF4EBP1 | MTOR | P42345 | 952 |
| EIF4EBP1 | RPS6 | P08227 | 929 |
| EIF4EBP1 | MLST8 | Q9BVC4 | 901 |
| EIF4EBP1 | AKT1 | P31749 | 883 |
| EIF4EBP1 | TSC2 | P49815 | 874 |
| EIF4EBP1 | EIF4A1 | P04765 | 856 |
| EIF4EBP1 | RICTOR | Q6R327 | 843 |
| EIF4EBP1 | RHEB | Q15382 | 841 |
| EIF4EBP1 | EIF4A2 | Q14240 | 839 |
| EIF4EBP1 | RPS6KB2 | Q9UBS0 | 836 |
| EIF4EBP1 | TSC1 | Q92574 | 799 |
IntAct
126 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| EIF4EBP1 | EIF4E | psi-mi:“MI:0915”(physical association) | 0.980 |
| EIF4E | EIF4EBP1 | psi-mi:“MI:0915”(physical association) | 0.980 |
| EIF4EBP1 | EIF4E | psi-mi:“MI:0407”(direct interaction) | 0.980 |
| EIF4E | EIF4EBP1 | psi-mi:“MI:0407”(direct interaction) | 0.980 |
| EIF4E | psi-mi:“MI:0914”(association) | 0.880 | |
| EIF4E | DDX3X | psi-mi:“MI:0914”(association) | 0.830 |
| EIF4E | EIF4G3 | psi-mi:“MI:0914”(association) | 0.810 |
| EIF4EBP1 | RPTOR | psi-mi:“MI:0407”(direct interaction) | 0.800 |
| RPTOR | EIF4EBP1 | psi-mi:“MI:0915”(physical association) | 0.800 |
BioGRID (201): EIF4EBP1 (Biochemical Activity), EIF4EBP1 (Affinity Capture-Western), EIF4EBP1 (Biochemical Activity), EIF4EBP1 (Biochemical Activity), EIF4EBP1 (Biochemical Activity), EIF4EBP1 (Affinity Capture-Western), EIF4EBP1 (Biochemical Activity), EIF4EBP1 (Two-hybrid), REL (Two-hybrid), TCF4 (Two-hybrid), EIF4EBP1 (Biochemical Activity), EIF4EBP1 (Biochemical Activity), EIF4EBP1 (Biochemical Activity), EIF4EBP1 (Affinity Capture-MS), CHTF8 (Two-hybrid)
ESM2 similar proteins: A2AQ25, A4IGU9, A7E300, A8E4V2, B5DF41, B5DGK1, F1N4M2, O15079, O55003, O60238, O60516, Q0IHF8, Q0P5A7, Q12983, Q13541, Q14DQ1, Q1LWL8, Q3B7T9, Q3T013, Q3UN70, Q3ZCB6, Q5PR01, Q5XG16, Q5XKK7, Q5ZLN7, Q60876, Q62622, Q62739, Q63744, Q68EF0, Q68FF7, Q6AYT4, Q6PBI2, Q6PFP3, Q6ZNC4, Q7Z309, Q80U23, Q80VV3, Q8AVU0, Q8LD26
Diamond homologs: O60516, P70445, Q0P5A7, Q13541, Q13542, Q54DU8, Q60876, Q62622, Q80VV3, Q98TT6, Q9XZ56
SIGNOR signaling
64 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| MTOR | “down-regulates activity” | EIF4EBP1 | phosphorylation |
| CDK1 | “down-regulates activity” | EIF4EBP1 | phosphorylation |
| MAPK1 | down-regulates | EIF4EBP1 | phosphorylation |
| MAPK14 | down-regulates | EIF4EBP1 | |
| EIF4EBP1 | “down-regulates activity” | EIF4E | binding |
| GSK3B | “down-regulates activity” | EIF4EBP1 | phosphorylation |
| CSNK1E | down-regulates | EIF4EBP1 | phosphorylation |
| mTORC1 | “down-regulates activity” | EIF4EBP1 | phosphorylation |
| CSNK2A2 | “down-regulates activity” | EIF4EBP1 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 45 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| MTOR signalling | 5 | 44.3× | 2e-05 |
| PIP3 activates AKT signaling | 8 | 17.8× | 4e-06 |
| PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling | 5 | 16.1× | 8e-04 |
| Intracellular signaling by second messengers | 5 | 15.2× | 1e-03 |
| Diseases of signal transduction by growth factor receptors and second messengers | 6 | 11.4× | 8e-04 |
| Transcriptional Regulation by TP53 | 5 | 10.3× | 2e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| translational initiation | 6 | 55.2× | 6e-07 |
| positive regulation of translation | 5 | 29.2× | 1e-04 |
| positive regulation of cell growth | 6 | 28.2× | 2e-05 |
| negative regulation of apoptotic process | 7 | 6.2× | 4e-03 |
Disease & clinical
Cancer significance
Clinical variants and AI predictions
ClinVar
22 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 10 |
| Likely benign | 1 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1455925 | NC_000008.10:g.(?37595441)(38961219_?)del | Pathogenic |
SpliceAI
425 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 8:38030716:G:GT | donor_gain | 1.0000 |
| 8:38030716:G:T | donor_gain | 1.0000 |
| 8:38057079:A:AG | acceptor_gain | 1.0000 |
| 8:38057080:G:GA | acceptor_gain | 1.0000 |
| 8:38057080:G:GT | acceptor_loss | 1.0000 |
| 8:38057080:GGT:G | acceptor_gain | 1.0000 |
| 8:38057246:A:G | donor_gain | 1.0000 |
| 8:38057256:GGGCG:G | donor_gain | 1.0000 |
| 8:38057257:GGCG:G | donor_gain | 1.0000 |
| 8:38057257:GGCGG:G | donor_gain | 1.0000 |
| 8:38057258:GCG:G | donor_gain | 1.0000 |
| 8:38057258:GCGG:G | donor_gain | 1.0000 |
| 8:38057261:G:GG | donor_gain | 1.0000 |
| 8:38030717:AGGT:A | donor_loss | 0.9900 |
| 8:38030718:GGT:G | donor_loss | 0.9900 |
| 8:38030719:GT:G | donor_loss | 0.9900 |
| 8:38030720:T:G | donor_loss | 0.9900 |
| 8:38057079:AG:A | acceptor_gain | 0.9900 |
| 8:38057080:GG:G | acceptor_gain | 0.9900 |
| 8:38057080:GGTA:G | acceptor_gain | 0.9900 |
| 8:38057080:GGTAC:G | acceptor_gain | 0.9900 |
| 8:38057209:G:GT | donor_gain | 0.9900 |
| 8:38057245:GA:G | donor_gain | 0.9900 |
| 8:38057261:G:A | donor_loss | 0.9900 |
| 8:38057262:T:A | donor_loss | 0.9900 |
| 8:38057263:G:GT | donor_loss | 0.9900 |
| 8:38030714:GGGAG:G | donor_gain | 0.9800 |
| 8:38030715:GGAGG:G | donor_gain | 0.9800 |
| 8:38030865:G:GT | donor_gain | 0.9800 |
| 8:38057077:CTAGG:C | acceptor_gain | 0.9800 |
AlphaMissense
769 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 8:38030700:T:C | F43L | 0.999 |
| 8:38030702:C:A | F43L | 0.999 |
| 8:38030702:C:G | F43L | 0.999 |
| 8:38030703:A:C | S44R | 0.999 |
| 8:38030705:C:A | S44R | 0.999 |
| 8:38030705:C:G | S44R | 0.999 |
| 8:38057090:T:G | I52S | 0.999 |
| 8:38057095:T:G | Y54D | 0.999 |
| 8:38059918:T:C | F114L | 0.999 |
| 8:38059920:T:A | F114L | 0.999 |
| 8:38059920:T:G | F114L | 0.999 |
| 8:38030701:T:C | F43S | 0.998 |
| 8:38030716:G:A | G48E | 0.998 |
| 8:38057081:G:A | G49D | 0.998 |
| 8:38057081:G:T | G49V | 0.998 |
| 8:38057088:G:C | R51S | 0.998 |
| 8:38057088:G:T | R51S | 0.998 |
| 8:38057090:T:A | I52N | 0.998 |
| 8:38057090:T:C | I52T | 0.998 |
| 8:38057095:T:C | Y54H | 0.998 |
| 8:38057102:G:C | R56P | 0.998 |
| 8:38057107:T:C | F58L | 0.998 |
| 8:38057109:C:A | F58L | 0.998 |
| 8:38057109:C:G | F58L | 0.998 |
| 8:38057111:T:C | L59P | 0.998 |
| 8:38030691:G:C | G40R | 0.997 |
| 8:38030692:G:A | G40D | 0.997 |
| 8:38030718:G:C | G49R | 0.997 |
| 8:38057093:T:A | I53N | 0.997 |
| 8:38057095:T:A | Y54N | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000005389 (8:38048874 A>G), RS1000056597 (8:38038743 T>C), RS1000279508 (8:38054640 A>T), RS1000389744 (8:38060643 C>G), RS1000485964 (8:38045387 C>CGTT), RS1000575788 (8:38033198 G>A), RS1000665025 (8:38050131 T>TGAACTCCTGACCTC), RS1000724986 (8:38059446 C>T), RS1000986673 (8:38037099 G>C), RS1001055474 (8:38037383 C>G), RS1001084168 (8:38043925 GAC>G), RS1001128592 (8:38037154 A>G), RS1001131364 (8:38031594 C>G,T), RS1001166719 (8:38053073 T>C), RS1001220528 (8:38056702 G>A)
Disease associations
OMIM: gene MIM:602223 | disease phenotypes: MIM:101600, MIM:147950
GenCC curated gene-disease
Mondo (2): Pfeiffer syndrome (MONDO:0007043), hypogonadotropic hypogonadism 2 with or without anosmia (MONDO:0007844)
Orphanet (2): Kallmann syndrome (Orphanet:478), Pfeiffer syndrome (Orphanet:710)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST005863_18 | Menopause (age at onset) | 2.000000e-08 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004704 | age at menopause |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL3351214 (SINGLE PROTEIN), CHEMBL4296088 (PROTEIN-PROTEIN INTERACTION)
Clinical evidence (CIViC)
Drug × variant × indication: 2 predictive associations from 2 curated evidence items.
| Variant | Therapy | Indication | Effect | Level | CIViC |
|---|---|---|---|---|---|
| EIF4EBP1 PHOSPHORYLATION | Everolimus | Gastric Adenocarcinoma | Sensitivity/Response | CIViC D | EID918 |
| EIF4EBP1 PHOSPHORYLATION | MTOR Kinase Inhibitor PP242 + WYE354 + Dactolisib | Colorectal Cancer | Resistance | CIViC D | EID932 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
1789 potent at pChembl≥5 of 1805 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 10.15 | IC50 | 0.07 | nM | CHEMBL6061585 |
| 9.08 | IC50 | 0.832 | nM | CHEMBL6014814 |
| 8.98 | IC50 | 1.05 | nM | CHEMBL5829109 |
| 8.97 | IC50 | 1.08 | nM | CHEMBL6025422 |
| 8.96 | IC50 | 1.11 | nM | CHEMBL5868247 |
| 8.96 | IC50 | 1.11 | nM | CHEMBL6005726 |
| 8.88 | IC50 | 1.32 | nM | CHEMBL5942267 |
| 8.87 | IC50 | 1.36 | nM | CHEMBL6049186 |
| 8.85 | IC50 | 1.4 | nM | CHEMBL5955061 |
| 8.82 | IC50 | 1.52 | nM | CHEMBL5766874 |
| 8.80 | IC50 | 1.57 | nM | CHEMBL5872545 |
| 8.76 | IC50 | 1.75 | nM | CHEMBL5867926 |
| 8.70 | IC50 | 2 | nM | CHEMBL5749737 |
| 8.67 | IC50 | 2.12 | nM | CHEMBL5975748 |
| 8.65 | IC50 | 2.25 | nM | CHEMBL6013552 |
| 8.65 | IC50 | 2.26 | nM | CHEMBL5955775 |
| 8.63 | IC50 | 2.33 | nM | CHEMBL5865561 |
| 8.62 | IC50 | 2.37 | nM | CHEMBL5770741 |
| 8.61 | IC50 | 2.45 | nM | CHEMBL5993825 |
| 8.61 | IC50 | 2.44 | nM | CHEMBL5857755 |
| 8.61 | IC50 | 2.44 | nM | CHEMBL5837198 |
| 8.55 | IC50 | 2.79 | nM | CHEMBL5752087 |
| 8.54 | IC50 | 2.92 | nM | CHEMBL5997235 |
| 8.54 | IC50 | 2.87 | nM | CHEMBL5966247 |
| 8.54 | IC50 | 2.87 | nM | CHEMBL5823781 |
| 8.53 | IC50 | 2.98 | nM | CHEMBL6007589 |
| 8.52 | IC50 | 3.02 | nM | CHEMBL5819279 |
| 8.51 | IC50 | 3.1 | nM | CHEMBL4577429 |
| 8.51 | IC50 | 3.12 | nM | CHEMBL5902945 |
| 8.51 | IC50 | 3.12 | nM | CHEMBL5865084 |
| 8.51 | IC50 | 3.12 | nM | CHEMBL5882758 |
| 8.50 | IC50 | 3.18 | nM | CHEMBL6013609 |
| 8.50 | IC50 | 3.15 | nM | CHEMBL6060012 |
| 8.49 | IC50 | 3.26 | nM | CHEMBL5944824 |
| 8.48 | IC50 | 3.27 | nM | CHEMBL5772839 |
| 8.48 | IC50 | 3.31 | nM | CHEMBL5820229 |
| 8.48 | IC50 | 3.32 | nM | CHEMBL5999888 |
| 8.47 | IC50 | 3.41 | nM | CHEMBL6051719 |
| 8.47 | IC50 | 3.4 | nM | CHEMBL5875282 |
| 8.47 | IC50 | 3.41 | nM | CHEMBL5764132 |
| 8.46 | IC50 | 3.51 | nM | CHEMBL5999014 |
| 8.45 | IC50 | 3.52 | nM | CHEMBL5884619 |
| 8.45 | IC50 | 3.59 | nM | CHEMBL5801810 |
| 8.45 | IC50 | 3.58 | nM | CHEMBL5974991 |
| 8.45 | IC50 | 3.58 | nM | CHEMBL6010422 |
| 8.44 | IC50 | 3.63 | nM | CHEMBL5918970 |
| 8.44 | IC50 | 3.65 | nM | CHEMBL5742504 |
| 8.43 | IC50 | 3.71 | nM | CHEMBL5854914 |
| 8.42 | IC50 | 3.8 | nM | CHEMBL5873281 |
| 8.42 | IC50 | 3.78 | nM | CHEMBL6036741 |
PubChem BioAssay actives
8 with measured affinity, of 65 total; 8 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (3S)-3-[[(2S)-2-[[(2S,3S)-2-[[(2S,3S)-2-[[(2S)-2-[[(2S,3R)-2-[(2-acetamidoacetyl)amino]-3-hydroxybutanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-methylpentanoyl]amino]-3-methylpentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-4-[[(2S)-1-[[(3S,6S,9S,12S,16Z,21S)-9-benzyl-21-[[(2R)-1-[[(2S)-5-carbamimidamido-1-[[(2S)-1,4-diamino-1,4-dioxobutan-2-yl]amino]-1-oxopentan-2-yl]amino]-1-oxo-3-sulfanylpropan-2-yl]carbamoyl]-12,21-dimethyl-6-(2-methylpropyl)-3-(2-methylsulfanylethyl)-2,5,8,11-tetraoxo-1,4,7,10-tetrazacyclohenicos-16-en-12-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-4-oxobutanoic acid | 1598541: Inhibition of Halo-tagged biotinylated human eIF4E expressed in Escherichia coli/Halo-tagged methyltetrazine-labelled human 4E-BP1 expressed in Escherichia coli protein-protein interaction incubated for 1 hr by catalytic enzyme-linked click chemistry assay | ic50 | 0.0031 | uM |
| (2S,5S,8S,11S,15Z,20S)-20-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-acetamido-6-aminohexanoyl]amino]-6-aminohexanoyl]amino]-5-(diaminomethylideneamino)pentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-hydroxypropanoyl]amino]-5-(diaminomethylideneamino)pentanoyl]amino]-N-[(2S)-1-amino-4-methyl-1-oxopentan-2-yl]-2-(3-amino-3-oxopropyl)-11,20-dimethyl-5,8-bis(2-methylpropyl)-3,6,9,21-tetraoxo-1,4,7,10-tetrazacyclohenicos-15-ene-11-carboxamide | 1598541: Inhibition of Halo-tagged biotinylated human eIF4E expressed in Escherichia coli/Halo-tagged methyltetrazine-labelled human 4E-BP1 expressed in Escherichia coli protein-protein interaction incubated for 1 hr by catalytic enzyme-linked click chemistry assay | ic50 | 0.0166 | uM |
| (4S)-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S,3S)-2-[[(2S,3S)-2-[[(2S)-2-[[(2S,3R)-2-[(2-acetamidoacetyl)amino]-3-hydroxybutanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-methylpentanoyl]amino]-3-methylpentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-carboxypropanoyl]amino]-5-carbamimidamidopentanoyl]amino]-6-aminohexanoyl]amino]-3-phenylpropanoyl]amino]-4-methylpentanoyl]amino]-4-methylsulfanylbutanoyl]amino]-5-[[(2R)-1-[[(2S)-5-carbamimidamido-1-[[(2S)-1,4-diamino-1,4-dioxobutan-2-yl]amino]-1-oxopentan-2-yl]amino]-1-oxo-3-sulfanylpropan-2-yl]amino]-5-oxopentanoic acid | 1598541: Inhibition of Halo-tagged biotinylated human eIF4E expressed in Escherichia coli/Halo-tagged methyltetrazine-labelled human 4E-BP1 expressed in Escherichia coli protein-protein interaction incubated for 1 hr by catalytic enzyme-linked click chemistry assay | ic50 | 0.0201 | uM |
| (4S)-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-acetamido-6-aminohexanoyl]amino]-6-aminohexanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-carboxypropanoyl]amino]-5-carbamimidamidopentanoyl]amino]-5-[[(2S)-1-[[(2S)-1-[[(2S)-1-[[2-[[(2S)-1-[[(2S)-5-amino-1-[[(2S)-1-amino-1-oxo-3-phenylpropan-2-yl]amino]-1,5-dioxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-2-oxoethyl]amino]-4-methyl-1-oxopentan-2-yl]amino]-4-methyl-1-oxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]amino]-5-oxopentanoic acid | 1598541: Inhibition of Halo-tagged biotinylated human eIF4E expressed in Escherichia coli/Halo-tagged methyltetrazine-labelled human 4E-BP1 expressed in Escherichia coli protein-protein interaction incubated for 1 hr by catalytic enzyme-linked click chemistry assay | ic50 | 0.1370 | uM |
| (4S)-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-acetamido-6-aminohexanoyl]amino]-6-aminohexanoyl]amino]-5-(diaminomethylideneamino)pentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-3-hydroxypropanoyl]amino]-5-(diaminomethylideneamino)pentanoyl]amino]-5-[[(2S)-5-amino-1-[[(2S)-1-[[(2S)-1-[[2-[[(2S)-1-amino-4-methyl-1-oxopentan-2-yl]amino]-2-oxoethyl]amino]-4-methyl-1-oxopentan-2-yl]amino]-4-methyl-1-oxopentan-2-yl]amino]-1,5-dioxopentan-2-yl]amino]-5-oxopentanoic acid | 1598541: Inhibition of Halo-tagged biotinylated human eIF4E expressed in Escherichia coli/Halo-tagged methyltetrazine-labelled human 4E-BP1 expressed in Escherichia coli protein-protein interaction incubated for 1 hr by catalytic enzyme-linked click chemistry assay | ic50 | 0.3840 | uM |
| (3S)-3-[[(2S)-2-[[(2S,3S)-2-[[(2S,3S)-2-[[(2S)-2-[[(2S,3R)-2-[(2-acetamidoacetyl)amino]-3-hydroxybutanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-methylpentanoyl]amino]-3-methylpentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-4-[[(2S)-1-[[(3S,6S,9S,12S,16Z,21S)-9-benzyl-21-[[(2R)-1-[[(2S)-5-carbamimidamido-1-[[(2S)-1,4-diamino-1,4-dioxobutan-2-yl]amino]-1-oxopentan-2-yl]amino]-1-oxo-3-sulfanylpropan-2-yl]carbamoyl]-3,6,12,21-tetramethyl-2,5,8,11-tetraoxo-1,4,7,10-tetrazacyclohenicos-16-en-12-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-4-oxobutanoic acid | 1598541: Inhibition of Halo-tagged biotinylated human eIF4E expressed in Escherichia coli/Halo-tagged methyltetrazine-labelled human 4E-BP1 expressed in Escherichia coli protein-protein interaction incubated for 1 hr by catalytic enzyme-linked click chemistry assay | ic50 | 3.5000 | uM |
| (3S)-3-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[(2S)-2-acetamido-6-aminohexanoyl]amino]-6-aminohexanoyl]amino]-5-carbamimidamidopentanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]-4-[[(2S)-1-[[(3S,6S,9S,12S,16Z,21S)-21-[[(2S)-1-[[(2S)-5-amino-1-[[(2S)-1-amino-1-oxo-3-phenylpropan-2-yl]amino]-1,5-dioxopentan-2-yl]amino]-1-oxo-3-phenylpropan-2-yl]carbamoyl]-9-benzyl-12,21-dimethyl-3,6-bis(2-methylpropyl)-2,5,8,11-tetraoxo-1,4,7,10-tetrazacyclohenicos-16-en-12-yl]amino]-5-carbamimidamido-1-oxopentan-2-yl]amino]-4-oxobutanoic acid | 1598541: Inhibition of Halo-tagged biotinylated human eIF4E expressed in Escherichia coli/Halo-tagged methyltetrazine-labelled human 4E-BP1 expressed in Escherichia coli protein-protein interaction incubated for 1 hr by catalytic enzyme-linked click chemistry assay | ic50 | 4.5000 | uM |
| (2R,14R,15S)-7,14,21-trihydroxy-16-oxa-5,12,19,26-tetrazaheptacyclo[15.12.0.02,15.04,13.06,11.018,27.020,25]nonacosa-1(29),4,6(11),7,9,12,17,19,21,23,25,27-dodecaene-28-carboxylic acid | 2010030: Inhibition of eIF4E-4E-BP1 (unknown origin) interaction by cat-ELCCA assay | ec50 | 7.8000 | uM |
CTD chemical–gene interactions
201 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Sirolimus | decreases reaction, increases abundance, decreases phosphorylation, affects phosphorylation, increases phosphorylation (+6 more) | 23 |
| Resveratrol | decreases activity, decreases expression, increases expression, increases activity, decreases phosphorylation (+2 more) | 8 |
| sodium arsenite | affects cotreatment, increases abundance, increases expression, increases phosphorylation, increases reaction (+3 more) | 7 |
| 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine | increases reaction, increases response to substance, affects cotreatment, decreases phosphorylation | 7 |
| Valproic Acid | increases expression, decreases expression, affects cotreatment | 7 |
| 2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one | increases phosphorylation, decreases phosphorylation, affects cotreatment, decreases reaction | 6 |
| Sorafenib | affects cotreatment, decreases phosphorylation, decreases reaction, increases phosphorylation | 6 |
| Cyclosporine | affects expression, increases expression | 6 |
| Everolimus | decreases activity, decreases reaction, increases phosphorylation, decreases phosphorylation, increases reaction (+1 more) | 5 |
| bisphenol A | affects expression, increases expression, decreases reaction | 4 |
| trichostatin A | affects cotreatment, increases expression, decreases phosphorylation | 4 |
| dactolisib | decreases phosphorylation, increases response to substance, decreases reaction, increases reaction | 4 |
| Tretinoin | decreases expression, increases reaction | 4 |
| deguelin | decreases expression, decreases phosphorylation, increases expression | 3 |
| platycodin D | decreases phosphorylation, increases reaction, affects cotreatment, decreases expression | 3 |
| temsirolimus | decreases reaction, increases phosphorylation, increases reaction, affects cotreatment, decreases phosphorylation | 3 |
| MK 2206 | decreases reaction, increases phosphorylation, decreases phosphorylation, affects cotreatment | 3 |
| Wortmannin | increases abundance, decreases reaction, increases phosphorylation, increases expression, affects cotreatment | 3 |
| Cisplatin | increases phosphorylation, increases reaction, decreases phosphorylation, affects cotreatment, decreases reaction | 3 |
| Curcumin | decreases reaction, increases expression, decreases expression, decreases phosphorylation | 3 |
| Niclosamide | increases reaction, decreases phosphorylation, decreases expression, decreases reaction, increases phosphorylation (+1 more) | 3 |
| Oxygen | affects cotreatment, decreases phosphorylation, decreases reaction, increases phosphorylation, affects phosphorylation (+1 more) | 3 |
| Cadmium Chloride | increases phosphorylation, decreases reaction, increases expression | 3 |
| entinostat | increases expression, affects cotreatment | 2 |
| dorsomorphin | decreases reaction, increases phosphorylation, affects cotreatment, increases expression | 2 |
| 1-(4-(4-propionylpiperazin-1-yl)-3-(trifluoromethyl)phenyl)-9-(quinolin-3-yl)benzo(h)(1,6)naphthyridin-2(1H)-one | affects binding, increases reaction, decreases phosphorylation | 2 |
| 1-(4-((2-(2-aminopyrimidin-5-yl)-7-methyl-4-morpholinothieno(3,2-d)pyrimidin-6-yl)methyl)piperazin-1-yl)-2-hydroxypropan-1-one | decreases phosphorylation, affects cotreatment | 2 |
| Imatinib Mesylate | decreases expression, decreases phosphorylation, increases reaction | 2 |
| Pioglitazone | increases expression, decreases phosphorylation, affects binding, decreases reaction | 2 |
| Sunitinib | affects cotreatment, decreases phosphorylation, increases expression | 2 |
ChEMBL screening assays
33 unique, capped per target: 33 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3371381 | Binding | Induction of 4E-BP1 phosphorylation at Thr37/46 in human A549 cells at 250 uM after 6 hrs by Western blotting analysis | The identification of perillyl alcohol glycosides with improved antiproliferative activity. — J Med Chem |
Cellosaurus cell lines
2 cell lines: 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1QX | Abcam HeLa EIF4EBP1 KO | Cancer cell line | Female |
| CVCL_SL79 | HAP1 EIF4EBP1 (-) | Cancer cell line | Male |
Clinical trials (associated diseases)
1 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT07535372 | Not specified | NOT_YET_RECRUITING | ASO Treatment for Syndromic Craniosynostoses |
Related Atlas pages
- Associated diseases: gastric adenocarcinoma, colorectal carcinoma
- Biomarker drugs (CIViC) (drugs whose response is associated with variants in this gene — CIViC predictive evidence, not targeting): Everolimus
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): colorectal carcinoma, gastric adenocarcinoma, hypogonadotropic hypogonadism 2 with or without anosmia, Pfeiffer syndrome