ENAH

gene
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Also known as FLJ10773NDPP1MENA

Summary

ENAH (ENAH actin regulator, HGNC:18271) is a protein-coding gene on chromosome 1q42.12, encoding Protein enabled homolog (Q8N8S7). Ena/VASP proteins are actin-associated proteins involved in a range of processes dependent on cytoskeleton remodeling and cell polarity such as axon guidance and lamellipodial and filopodial dynamics in migrating cells.

This gene encodes a member of the enabled/ vasodilator-stimulated phosphoprotein. Members of this gene family are involved in actin-based motility. This protein is involved in regulating the assembly of actin filaments and modulates cell adhesion and motility. Alternate splice variants of this gene have been correlated with tumor invasiveness in certain tissues and these variants may serve as prognostic markers. A pseudogene of this gene is found on chromosome 3.

Source: NCBI Gene 55740 — RefSeq curated summary.

At a glance

  • GWAS associations: 6
  • Clinical variants (ClinVar): 83 total
  • MANE Select transcript: NM_018212

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:18271
Approved symbolENAH
NameENAH actin regulator
Location1q42.12
Locus typegene with protein product
StatusApproved
AliasesFLJ10773, NDPP1, MENA
Ensembl geneENSG00000154380
Ensembl biotypeprotein_coding
OMIM609061
Entrez55740

Gene structure

Transcript identifiers

Ensembl transcripts: 26 — 22 protein_coding, 2 retained_intron, 2 protein_coding_CDS_not_defined

ENST00000284563, ENST00000358675, ENST00000366843, ENST00000366844, ENST00000391874, ENST00000483952, ENST00000497899, ENST00000498108, ENST00000635051, ENST00000696609, ENST00000893223, ENST00000893224, ENST00000893225, ENST00000893226, ENST00000893227, ENST00000893228, ENST00000893229, ENST00000893230, ENST00000931074, ENST00000931075, ENST00000931076, ENST00000931077, ENST00000931078, ENST00000931079, ENST00000931080, ENST00000931081

RefSeq mRNA: 9 — MANE Select: NM_018212 NM_001008493, NM_001377481, NM_001377482, NM_001377483, NM_001420159, NM_001420160, NM_001420161, NM_001420162, NM_018212

CCDS: CCDS31040, CCDS31041

Canonical transcript exons

ENST00000366843 — 14 exons

ExonStartEnd
ENSE00001129400225514596225514900
ENSE00001811595225486829225497812
ENSE00001888697225652686225653123
ENSE00003463753225519198225519565
ENSE00003479547225567249225567414
ENSE00003485859225530554225530638
ENSE00003496493225500992225501070
ENSE00003534455225512871225513016
ENSE00003567376225554906225555083
ENSE00003597630225507951225508017
ENSE00003627426225511811225511859
ENSE00003670110225498347225498404
ENSE00003681553225512657225512714
ENSE00003967846225517196225517306

Expression profiles

Bgee: expression breadth ubiquitous, 292 present calls, max score 99.08.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 51.0827 / max 598.3145, expressed in 1526 samples.

FANTOM5 promoters (8 alternative TSS)

Promoter IDTPM avgSamples expressed
1771445.08641523
177152.0798923
177091.2435670
177101.1255577
177080.7548411
177110.5419273
177030.193178
177040.057528

Top tissues by expression

295 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
saphenous veinUBERON:000731899.08gold quality
blood vessel layerUBERON:000479798.53gold quality
colonic epitheliumUBERON:000039798.49gold quality
secondary oocyteCL:000065598.36gold quality
vena cavaUBERON:000408798.21gold quality
urethraUBERON:000005798.16gold quality
seminal vesicleUBERON:000099898.08gold quality
cardia of stomachUBERON:000116298.08gold quality
ventricular zoneUBERON:000305398.07gold quality
calcaneal tendonUBERON:000370197.92gold quality
skeletal muscle tissue of rectus abdominisUBERON:000451197.88gold quality
sural nerveUBERON:001548897.70gold quality
choroid plexus epitheliumUBERON:000391197.67gold quality
oocyteCL:000002397.50gold quality
bronchial epithelial cellCL:000232897.39gold quality
ganglionic eminenceUBERON:000402397.35gold quality
adrenal tissueUBERON:001830397.28gold quality
embryoUBERON:000092297.19gold quality
pylorusUBERON:000116697.18gold quality
cauda epididymisUBERON:000436097.03gold quality
popliteal arteryUBERON:000225096.92gold quality
tibial arteryUBERON:000761096.91gold quality
mucosa of paranasal sinusUBERON:000503096.90gold quality
corpus epididymisUBERON:000435996.83gold quality
tibiaUBERON:000097996.80gold quality
arteryUBERON:000163796.64gold quality
corpus callosumUBERON:000233696.50gold quality
nippleUBERON:000203096.43gold quality
aortaUBERON:000094796.42gold quality
smooth muscle tissueUBERON:000113596.23gold quality

Single-cell (SCXA)

Detected in 4 experiment(s), a significant marker in 4.

ExperimentMarker?Max mean expression
E-ANND-3yes13.64
E-CURD-112yes13.19
E-MTAB-8271yes7.17
E-MTAB-6678yes4.03

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): CTNNB1, TP53

miRNA regulators (miRDB)

309 targeting ENAH, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3163100.0077.238605
HSA-MIR-340-5P100.0072.504437
HSA-MIR-3613-3P100.0076.367965
HSA-MIR-4510100.0066.602050
HSA-MIR-5011-5P100.0083.465820
HSA-MIR-6127100.0066.762188
HSA-MIR-6129100.0066.462080
HSA-MIR-6130100.0066.692012
HSA-MIR-6133100.0066.482064
HSA-MIR-3646100.0073.565283
HSA-MIR-656-3P100.0072.152788
HSA-MIR-4425100.0067.591049
HSA-MIR-5692A100.0074.406850
HSA-MIR-4262100.0073.263931
HSA-MIR-200B-3P100.0073.312693
HSA-MIR-200C-3P100.0073.352685
HSA-MIR-429100.0073.442698
HSA-MIR-6833-3P100.0070.633197
HSA-MIR-371B-5P99.9975.344759
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-186-5P99.9970.833707
HSA-MIR-428299.9975.366408
HSA-MIR-3667-3P99.9967.171636
HSA-MIR-366299.9973.825684
HSA-MIR-373-5P99.9875.364753
HSA-MIR-616-5P99.9875.584775
HSA-MIR-4482-3P99.9872.503147
HSA-MIR-548P99.9872.253784
HSA-MIR-56899.9869.862084
HSA-MIR-480399.9871.993117

Literature-anchored findings (GeneRIF, showing 40)

  • mena phosphorylation is regulated by Abi-1 and c-Abl (PMID:12672821)
  • overexpression of ENAH is associated with breast cancer (PMID:16533770)
  • Oservations identify Tes as an atypical binding partner of EVH1 domain of Mena and a regulator specific to a single Ena/VASP family member. (PMID:18158903)
  • the hMena(+11a) isoform is associated with an epithelial phenotype and identifies EGFR-dependent cell lines that are sensitive to the EGFR inhibitor erlotinib (PMID:18676769)
  • two isoforms of Mena, ++ and +++, are upregulated in the invasive tumor cells and one isoform, 11a, is downregulated (PMID:18985426)
  • the Mena invasion isoform potentiates EGF-induced carcinoma cell invasion and metastasis (PMID:19081071)
  • Increased hMena expression is associated with colorectal carcinomas. (PMID:19082477)
  • hMena possesses properties which help to regulate the formation of lamellipodia through the modulation of the activity of Rac1. (PMID:19277120)
  • Mena was not expressed in the normal cervical squamous epithelium but its expression was increased in parallel with the increasing grade of CIN, with up-regulation upon transition to CIN3 and further to invasive carcinoma. (PMID:19434313)
  • ENAH polymorphisms are associated with increased susceptibility, development of proteinuria and gross hematuria, and pathological progression of childhood IgAN. (PMID:19641378)
  • hMena and HER2 signalling has a role in breast cancer (PMID:21209853)
  • Mammalian enabled (Mena) is a critical regulator of cardiac function. (PMID:21335464)
  • ENA/VASP-family proteins are functionally redundant in homologous recombination, and MENA, VASP and EVL may be involved in the DSB repair pathway in humans (PMID:21398369)
  • Data show that VASP and Mena interact with RSK1. (PMID:21423205)
  • results indicate that by mediating intensive F-actin accumulation at the sites of cell infiltration, WAVE2, N-WASP, and Mena are crucial for PI3K-dependent cell invasion induced by PDGF (PMID:21769917)
  • Mena protein seems to play a role in malignant transformation and its intensity is correlated with the type and grade of tumor and also with vascular invasion. Its positivity in endothelial cells may suggest its potential role in tumor angiogenesis. (PMID:22472896)
  • Overexpression of Wnt1 and Wnt3a ligands increased MENA mRNA levels. (PMID:22615875)
  • High Menacalc levels identify a subgroup of breast cancer patients with poor disease-specific survival, suggesting that Menacalc may serve as a biomarker for metastasis. (PMID:22971274)
  • This study demonistrated that dysregulation of ENAH eeox in brain of patient with schizophrenia. (PMID:23062752)
  • These data suggest that polarized and growth-arrested cellular architecture correlates with absence of alternative hMENA isoform expression. (PMID:23129656)
  • we consider that it is necessary to analyze the expression of Mena splice variants in a higher number of cases, in different epithelial lesions, and also in experimental studies to define its exact role in carcinogenesis (PMID:23956979)
  • this study suggests a novel mechanism in which Lpd mediates EGFR endocytosis via Mena downstream of endophilin. (PMID:24076656)
  • High expression of Mena is associated with hepatocellular carcinoma. (PMID:24683008)
  • determined the alpha-synuclein-binding domain of beta-III tubulin and demonstrated that a short fragment containing this domain can suppress alpha-synuclein accumulation in the primary cultured cells (PMID:25031323)
  • the higher relative expression of hMena(11a) compared with hMena(INV) may predict malignant transformation in breast epithelial cells, and, furthermore, a reversal of expression of hMena(11a) and hMena(INV) may dictate the state of cancer progression (PMID:25109497)
  • Invasive breast ductal-carcinoma cells that migrated thru a layer of human endothelial cells were enriched for the transcript encoding Mena(INV), an invasive isoform of Mena. (PMID:25429076)
  • High ENAH expression is associated with trastuzumab-resistant breast cancer. (PMID:25449779)
  • our results indicate that hMENA11a is an anti-apoptotic regulator involved in the HER3-mediated mechanisms of resistance to PI3K inhibition in breast cancer (PMID:25961924)
  • we evaluate the prognostic value of Menacalc in a cohort of ANN patients. Our primary objective was to determine if there was an association between Menacalc and overall patient mortality. (PMID:26112005)
  • these data provide the first description of endogenous Mena(INV) protein expression in mouse and human breast tumors. (PMID:26680363)
  • PPARgamma might inhibit the proliferation and migration of GC cell lines through suppressing the expression of TERT and ENAH (PMID:26956036)
  • SHIP2 recruits Mena to invadopodia and disruption of SHIP2-Mena interaction in cancer cells leads to attenuated capacity for ECM degradation and invasion in vitro, as well as reduced metastasis in vivo. (PMID:27597754)
  • the difference between mRNAs encoding constitutive Mena sequences and those containing the 11a exon correlates with metastasis in colorectal cancer, suggesting that 11a exon exclusion contributes to invasive phenotypes and leads to poor clinical outcome (PMID:27748415)
  • Mena(INV) promotes invadopodium maturation by inhibiting normal dephosphorylation of cortactin at tyrosine 421 by the phosphatase PTP1B. (PMID:27824079)
  • Endothelin-1 is a regulator of Mena expression in the serous ovarian cancer.Mena expression is associated with a poor prognosis in serous ovarian cancer patients.Mena is recruited to mature invadopodia in endothelin-1 and beta-arrestin-1 signaling. (PMID:29439204)
  • hMENA regulates beta1 integrin expression and hMENA(11a) reduces and hMENADeltav6 increases beta1 integrin activation and signaling (PMID:29907768)
  • Enah is upregulated in gastric cancer tissues and cell lines and is correlated with clinicopathological parameters and survival of gastric cancer patients. (PMID:30250066)
  • Findings show that Mena is a splicing target of PTBP1 which regulates exon11a skipping to promote lung cancer cells metastasis. (PMID:31075540)
  • Scaffold stiffness influences breast cancer cell invasion via EGFR-linked Mena upregulation and matrix remodeling. (PMID:31323325)
  • IRSp53 is a novel interactor of SHIP2: A role of the actin binding protein Mena in their cellular localization in breast cancer cells. (PMID:32535200)

Cross-species orthologs

6 orthologs

OrganismSymbolGene ID
danio_rerioenahENSDARG00000032049
mus_musculusEnahENSMUSG00000022995
rattus_norvegicusEnahENSRNOG00000031934
drosophila_melanogasterenaFBGN0000578
drosophila_melanogasterSpredFBGN0020767
caenorhabditis_elegansWBGENE00006770

Paralogs (5): VASP (ENSG00000125753), SPRED1 (ENSG00000166068), SPRED3 (ENSG00000188766), EVL (ENSG00000196405), SPRED2 (ENSG00000198369)

Protein

Protein identifiers

Protein enabled homologQ8N8S7 (reviewed: Q8N8S7)

All UniProt accessions (6): Q8N8S7, A0A075B6E5, A0A0U1RQP7, A0A0U1RRM6, A0A4D6J698, A0A8Q3WLE0

UniProt curated annotations — full annotation on UniProt →

Function. Ena/VASP proteins are actin-associated proteins involved in a range of processes dependent on cytoskeleton remodeling and cell polarity such as axon guidance and lamellipodial and filopodial dynamics in migrating cells. ENAH induces the formation of F-actin rich outgrowths in fibroblasts. Acts synergistically with BAIAP2-alpha and downstream of NTN1 to promote filipodia formation.

Subunit / interactions. Homotetramer. Interacts with APBB1IP, APBB1, PFN1 and ROBO4. Isoforms, containing the polyproline-rich regions with PPLP motifs, bind the WW domain of APBB1IP. Isoforms, containing the PPSY motif, bind, in vitro, to the WW2 and WW3 domains of NEDD4 and to the WW1 domain of YAP1. Binds the SH3 domain of BAIAP2-alpha but only after the autoinhibitory region of BAIAP2-alpha has been blocked by interaction with CDC42. Interacts, via the EVH1/WH1 domain, with the Pro-rich domains from VCL, ZYX and Listeria monocytogenes actA and with TES (via LIM domains). The TES LIM domain and the Pro-rich domains from VCL or ZYX compete for the same binding site. Interaction with ZYX is important for targeting ENAH to focal adhesions and enhances production of actin-rich structures at the apical surface of cells. Interacts, through the Pro-rich region, with the C-terminal SH3 domain of DNMPB. Binds GPHN. Interacts with FAT1 (via EVH1 domains). Heterotrimer with TES and ACTL7A. Interacts with PRPF40A.

Subcellular location. Cytoplasm. Cytoskeleton. Cell projection. Lamellipodium. Filopodium. Synapse. Cell junction. Focal adhesion.

Tissue specificity. Expressed in myoepithelia of parotid, breast, bronchial glands and sweat glands. Expressed in colon-rectum muscolaris mucosae epithelium, pancreas acinar ductal epithelium, endometrium epithelium, prostate fibromuscolar stroma and placenta vascular media. Overexpressed in a majority of breast cancer cell lines and primary breast tumor lesions.

Post-translational modifications. NTN1-induced PKA phosphorylation on Ser-265 directly parallels the formation of filopodial protrusions.

Domain organisation. The EVH2 domain is comprised of 3 regions. Block A is a thymosin-like domain required for G-actin binding. The KLKR motif within this block is essential for the G-actin binding and for actin polymerization. Block B is required for F-actin binding and subcellular location, and Block C for tetramerization.

Miscellaneous. Required to transform actin polymerization into active movement for the propulsive force of Listeria monocytogenes. Expression restricted to invasive cancer cells.

Similarity. Belongs to the Ena/VASP family.

Isoforms (3)

UniProt IDNamesCanonical?
Q8N8S7-11yes
Q8N8S7-22
Q8N8S7-33, Deltav6

RefSeq proteins (9): NP_001008493, NP_001364410, NP_001364411, NP_001364412, NP_001407088, NP_001407089, NP_001407090, NP_001407091, NP_060682* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000697WH1/EVH1_domDomain
IPR011993PH-like_dom_sfHomologous_superfamily
IPR014885VASP_tetraDomain
IPR038023VASP_sfHomologous_superfamily

Pfam: PF00568, PF08776

UniProt features (59 total): modified residue 10, repeat 9, compositionally biased region 9, strand 9, region of interest 8, splice variant 3, turn 3, coiled-coil region 2, helix 2, chain 1, domain 1, short sequence motif 1, sequence conflict 1

Structure

Experimental structures (PDB)

27 structures.

PDBMethodResolution (Å)
7A5MX-RAY DIFFRACTION0.78
6RD2X-RAY DIFFRACTION1
5NCGX-RAY DIFFRACTION1.02
6RCFX-RAY DIFFRACTION1.1
5NBFX-RAY DIFFRACTION1.15
5N9CX-RAY DIFFRACTION1.16
5NEGX-RAY DIFFRACTION1.29
2HO2X-RAY DIFFRACTION1.33
6RCJX-RAY DIFFRACTION1.35
7AKIX-RAY DIFFRACTION1.36
5NCFX-RAY DIFFRACTION1.4
6XVTX-RAY DIFFRACTION1.4
9C66X-RAY DIFFRACTION1.4
5NDUX-RAY DIFFRACTION1.42
5ND0X-RAY DIFFRACTION1.45
5NAJX-RAY DIFFRACTION1.46
6XXRX-RAY DIFFRACTION1.48
5N91X-RAY DIFFRACTION1.49
5NC2X-RAY DIFFRACTION1.58
5NBXX-RAY DIFFRACTION1.65
5NCPX-RAY DIFFRACTION1.65
4MY6X-RAY DIFFRACTION1.7
5N9PX-RAY DIFFRACTION1.8
7LXEX-RAY DIFFRACTION1.88
2IYBX-RAY DIFFRACTION2.35
2XQNX-RAY DIFFRACTION2.62
5NC7X-RAY DIFFRACTION2.7

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q8N8S7-F172.690.46

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (10): 125, 265, 506, 508, 502, 508, 512, 465, 471, 475

Function

Pathways and Gene Ontology

Reactome pathways

2 pathways

IDPathway
R-HSA-202433Generation of second messenger molecules
R-HSA-376176Signaling by ROBO receptors

MSigDB gene sets: 0 (showing top):

GO Biological Process (4): axon guidance (GO:0007411), actin polymerization or depolymerization (GO:0008154), actin polymerization-dependent cell motility (GO:0070358), postsynaptic cytoskeleton organization (GO:0099188)

GO Molecular Function (6): actin binding (GO:0003779), profilin binding (GO:0005522), SH3 domain binding (GO:0017124), WW domain binding (GO:0050699), protein binding (GO:0005515), protein domain specific binding (GO:0019904)

GO Cellular Component (12): cytosol (GO:0005829), cytoskeleton (GO:0005856), plasma membrane (GO:0005886), focal adhesion (GO:0005925), lamellipodium (GO:0030027), filopodium (GO:0030175), postsynapse (GO:0098794), GABA-ergic synapse (GO:0098982), cytoplasm (GO:0005737), cell projection (GO:0042995), synapse (GO:0045202), anchoring junction (GO:0070161)

Reactome top-level categories

Rollup of top-2 pathways:

CategoryPathways
TCR signaling1
Axon guidance1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure4
protein binding2
protein domain specific binding2
synapse2
cell junction2
axonogenesis1
neuron projection guidance1
actin filament organization1
cell motility1
cytoskeleton organization1
postsynapse organization1
cytoskeletal protein binding1
binding1
cytoplasm1
intracellular membraneless organelle1
membrane1
cell periphery1
cell-substrate junction1
cell leading edge1
plasma membrane bounded cell projection1
actin-based cell projection1
intracellular anatomical structure1

Protein interactions and networks

STRING

1496 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
ENAHESRP1Q6NXG1906
ENAHESRP2Q9H6T0904
ENAHCTNND1O60716752
ENAHWASLO00401735
ENAHABI1Q8IZP0707
ENAHBAIAP2Q9UQB8693
ENAHPFN1P07737677
ENAHAPBB1O00213667
ENAHWASF1Q92558659
ENAHWIPF2Q8TF74654
ENAHPFN4Q8NHR9654
ENAHPFN3P60673652
ENAHGPHNQ9NQX3628
ENAHFGFR2P18443623
ENAHRAPH1Q70E73586

IntAct

82 interactions, top by confidence:

ABTypeScore
VASPCEP43psi-mi:“MI:0914”(association)0.740
ZYXENAHpsi-mi:“MI:0915”(physical association)0.670
DLGAP4LIN7Apsi-mi:“MI:0914”(association)0.590
TESENAHpsi-mi:“MI:0407”(direct interaction)0.540
TESENAHpsi-mi:“MI:0915”(physical association)0.540
SYNGAP1IGF2BP3psi-mi:“MI:0914”(association)0.530
SYNGAP1SEC16Apsi-mi:“MI:0914”(association)0.530
VASPGTPBP1psi-mi:“MI:0914”(association)0.530
BAG2HGSpsi-mi:“MI:0914”(association)0.530
TACC3HSPA8psi-mi:“MI:0914”(association)0.530
NECTIN4EIF2B2psi-mi:“MI:0914”(association)0.530
ZYXTBC1D10Bpsi-mi:“MI:0914”(association)0.530
NHSL3NCK2psi-mi:“MI:0914”(association)0.530
EVLVASPpsi-mi:“MI:0914”(association)0.530
DYRK1BBMAL1psi-mi:“MI:0914”(association)0.530
ENAHTERF2IPpsi-mi:“MI:0915”(physical association)0.510
DCAF7CLASP2psi-mi:“MI:0914”(association)0.510
FAT1ENAHpsi-mi:“MI:0407”(direct interaction)0.440
ENAHFAT1psi-mi:“MI:0407”(direct interaction)0.440
ACTL7AENAHpsi-mi:“MI:0915”(physical association)0.400
ENAHRPS6KA1psi-mi:“MI:0915”(physical association)0.400
ENAHBAIAP2psi-mi:“MI:0915”(physical association)0.400
ENAHMYO10psi-mi:“MI:0915”(physical association)0.400
HMGB1ENAHpsi-mi:“MI:0915”(physical association)0.370
MAPK1ENAHpsi-mi:“MI:0915”(physical association)0.370
ENAHSPTA1psi-mi:“MI:0915”(physical association)0.370
TACC3DHRS2psi-mi:“MI:0914”(association)0.350
PRPF4psi-mi:“MI:0914”(association)0.350

BioGRID (188): ENAH (Affinity Capture-Western), ENAH (Affinity Capture-Western), ENAH (Affinity Capture-Western), ENAH (Reconstituted Complex), ENAH (Reconstituted Complex), ENAH (Reconstituted Complex), ENAH (Affinity Capture-MS), ENAH (Affinity Capture-MS), ENAH (Affinity Capture-MS), ENAH (Affinity Capture-MS), ENAH (Co-fractionation), EVL (Co-fractionation), ENAH (Affinity Capture-MS), ENAH (Proximity Label-MS), ENAH (Affinity Capture-MS)

ESM2 similar proteins: A1A5Q0, A2VDK6, A7Z063, B2RYF7, B5DF93, E1BTG2, O00401, O08816, P49140, P50551, Q02225, Q0IIJ3, Q13191, Q13435, Q28DN4, Q3TC46, Q3UHZ5, Q3UJB0, Q3UQU0, Q5BJU7, Q5NVG8, Q5PQQ2, Q5R8Q4, Q5T8P6, Q5U3K5, Q5ZKA6, Q62415, Q68EF0, Q6NZN0, Q6P0D5, Q6P5Q4, Q6PFT9, Q7Z5R6, Q86TB9, Q8BH43, Q8CH02, Q8IWZ8, Q8N8S7, Q8R5A3, Q8R5H6

Diamond homologs: O08719, P50551, P50552, P70429, P70460, Q03173, Q2TA49, Q3C2P8, Q5R896, Q5RDN2, Q5TJ65, Q5Y171, Q64GL0, Q6NYK3, Q7Z698, Q8N8S7, Q8T4F7, Q924S7, Q9UI08, Q2MJR0, Q6P6N5, Q9Z2X5, A2VDU1, O43597, O43610, Q08E39, Q2PFN5, Q3UUD2, Q5R959, Q66JG9, Q7Z699, Q866R9, Q924S8, Q9C004, Q9PTL2, Q9QXV8, Q9WTP2

SIGNOR signaling

6 interactions.

AEffectBMechanism
PKA“up-regulates activity”ENAHphosphorylation
PRKG1“down-regulates activity”ENAHphosphorylation
ENAHup-regulatesAxonal_growth_cone_formation
ENAHup-regulatesNeurite_outgrowth
BAIAP2“up-regulates activity”ENAHbinding
RAPH1“up-regulates activity”ENAHbinding

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 95 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

GO biological processes:

GO termPartnersFoldFDR
positive regulation of actin filament polymerization518.4×6e-03

Disease & clinical

Clinical variants and AI predictions

ClinVar

83 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance59
Likely benign5
Benign3

Top pathogenic / likely-pathogenic (0)

SpliceAI

3387 predictions. Top by Δscore:

VariantEffectΔscore
1:225507945:TGATA:Tdonor_loss1.0000
1:225507946:GATAC:Gdonor_loss1.0000
1:225507947:ATAC:Adonor_loss1.0000
1:225507948:TACC:Tdonor_loss1.0000
1:225507949:A:Cdonor_loss1.0000
1:225507950:C:CGdonor_loss1.0000
1:225508015:GTTC:Gacceptor_loss1.0000
1:225508017:TCTT:Tacceptor_loss1.0000
1:225508018:C:CCacceptor_gain1.0000
1:225508019:T:Aacceptor_loss1.0000
1:225508019:T:Cacceptor_gain1.0000
1:225508020:T:Cacceptor_gain1.0000
1:225508020:T:TCacceptor_gain1.0000
1:225512655:A:ACdonor_gain1.0000
1:225512656:C:CCdonor_gain1.0000
1:225512656:CA:Cdonor_gain1.0000
1:225513018:T:Cacceptor_gain1.0000
1:225519561:GTTGT:Gacceptor_gain1.0000
1:225519562:TTGT:Tacceptor_gain1.0000
1:225519563:TGT:Tacceptor_gain1.0000
1:225519564:GT:Gacceptor_gain1.0000
1:225519565:TCTG:Tacceptor_loss1.0000
1:225519566:C:CCacceptor_gain1.0000
1:225530549:TTTAC:Tdonor_loss1.0000
1:225530550:TTA:Tdonor_loss1.0000
1:225530551:TA:Tdonor_loss1.0000
1:225530553:C:Tdonor_loss1.0000
1:225530553:CCTT:Cdonor_gain1.0000
1:225530556:T:Adonor_gain1.0000
1:225530634:TGGCC:Tacceptor_gain1.0000

AlphaMissense

3656 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
1:225497809:A:TI581N1.000
1:225498355:A:GL577P1.000
1:225498364:T:AK574I1.000
1:225498367:A:GL573P1.000
1:225512711:T:AR456S1.000
1:225512711:T:GR456S1.000
1:225512712:C:GR456T1.000
1:225512714:C:AR455S1.000
1:225512714:C:GR455S1.000
1:225512871:C:AR455M1.000
1:225512871:C:GR455T1.000
1:225512878:C:GA453P1.000
1:225512880:A:GL452P1.000
1:225512880:A:TL452Q1.000
1:225512883:A:GL451P1.000
1:225512891:C:AM448I1.000
1:225512891:C:GM448I1.000
1:225512891:C:TM448I1.000
1:225512892:A:CM448R1.000
1:225512892:A:GM448T1.000
1:225512892:A:TM448K1.000
1:225554932:A:GL108S1.000
1:225554935:G:TA107D1.000
1:225554936:C:GA107P1.000
1:225554944:A:CM104R1.000
1:225554944:A:TM104K1.000
1:225554947:G:TA103D1.000
1:225554948:C:GA103P1.000
1:225554954:C:GA101P1.000
1:225554955:G:CF100L1.000

dbSNP variants (sampled 300 via entrez): RS1000002575 (1:225654367 A>G), RS1000015503 (1:225581677 A>G), RS1000067187 (1:225536464 A>G,T), RS1000107718 (1:225597995 G>A), RS1000119965 (1:225654547 C>T), RS1000125039 (1:225528287 G>C), RS1000132335 (1:225525305 A>G), RS1000187084 (1:225594495 A>T), RS1000203622 (1:225650343 C>G,T), RS1000210319 (1:225508081 A>G,T), RS1000225632 (1:225652669 C>T), RS1000244131 (1:225543722 C>T), RS1000260093 (1:225630436 T>C), RS1000265764 (1:225643502 A>C), RS1000272959 (1:225512379 T>C)

Disease associations

OMIM: gene MIM:609061 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

6 associations (top):

StudyTraitp-value
GCST001762_686Obesity-related traits2.000000e-06
GCST003447_2Neuroticism2.000000e-08
GCST005851_25Delirium4.000000e-06
GCST006427_22Depression in smokers4.000000e-06
GCST010796_5335Electrocardiogram morphology (amplitude at temporal datapoints)4.000000e-08
GCST90013407_89Liver enzyme levels (gamma-glutamyl transferase)4.000000e-21

EFO canonical traits (4, from GWAS)

EFO IDTrait name
EFO:0004810interleukin-6 measurement
EFO:0007660neuroticism measurement
EFO:0004327electrocardiography
EFO:0004532serum gamma-glutamyl transferase measurement

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

44 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidaffects cotreatment, decreases expression, affects expression6
trichostatin Aaffects cotreatment, decreases expression3
Estradiolincreases reaction, affects expression, affects binding2
Phenylmercuric Acetateaffects cotreatment, decreases expression2
Tretinoindecreases expression2
aristolochic acid Idecreases expression1
FR900359increases phosphorylation1
bisphenol Fincreases expression1
oxybenzonedecreases expression1
bisphenol Aincreases expression1
arsenitedecreases reaction, affects binding1
butyraldehydedecreases expression1
potassium chromate(VI)decreases expression1
S-(1,2-dichlorovinyl)cysteineaffects cotreatment, decreases expression1
pentanaldecreases expression1
perfluorooctane sulfonic aciddecreases expression1
CGP 52608affects binding, increases reaction1
calfactantincreases expression, affects cotreatment1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, decreases expression1
bromovanindecreases expression1
dorsomorphinaffects cotreatment, decreases expression1
jinfukangaffects cotreatment, decreases expression1
bis-N,N-dimethylamino-2-(N-methylpyrrolyl)methyl cyclopentadienyl titanium (IV)decreases expression1
bisphenol AFincreases expression1
Resveratroldecreases expression, affects cotreatment1
Arsenic Trioxideincreases expression1
Leflunomideincreases expression1
Acetaminophendecreases expression1
Benzo(a)pyrenedecreases expression1
Cisplatinaffects cotreatment, decreases expression1

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

  • Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): delirium