ENO3
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Summary
ENO3 (enolase 3, HGNC:3354) is a protein-coding gene on chromosome 17p13.2, encoding Beta-enolase (P13929). Enolase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate in glycolysis and the reverse reaction in gluconeogenesis.
This gene encodes one of the three enolase isoenzymes found in mammals. This isoenzyme is found in skeletal muscle cells in the adult where it may play a role in muscle development and regeneration. A switch from alpha enolase to beta enolase occurs in muscle tissue during development in rodents. Mutations in this gene have be associated glycogen storage disease. Alternatively spliced transcript variants encoding different isoforms have been described.
Source: NCBI Gene 2027 — RefSeq curated summary.
At a glance
- Gene–disease (curated): glycogen storage disease due to muscle beta-enolase deficiency (Strong, GenCC)
- GWAS associations: 2
- Clinical variants (ClinVar): 414 total — 2 pathogenic, 2 likely-pathogenic
- Phenotypes (HPO): 7
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity unscored
- MANE Select transcript:
NM_053013
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3354 |
| Approved symbol | ENO3 |
| Name | enolase 3 |
| Location | 17p13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000108515 |
| Ensembl biotype | protein_coding |
| OMIM | 131370 |
| Entrez | 2027 |
Gene structure
Transcript identifiers
Ensembl transcripts: 48 — 41 protein_coding, 6 retained_intron, 1 nonsense_mediated_decay
ENST00000323997, ENST00000518175, ENST00000518972, ENST00000519266, ENST00000519300, ENST00000519584, ENST00000519602, ENST00000519834, ENST00000520221, ENST00000521659, ENST00000521811, ENST00000522249, ENST00000522301, ENST00000522425, ENST00000522798, ENST00000522954, ENST00000571235, ENST00000896245, ENST00000896246, ENST00000896247, ENST00000896248, ENST00000896249, ENST00000896250, ENST00000896251, ENST00000896252, ENST00000896253, ENST00000896254, ENST00000896255, ENST00000896256, ENST00000927531, ENST00000927532, ENST00000927533, ENST00000927534, ENST00000927535, ENST00000969664, ENST00000969665, ENST00000969666, ENST00000969667, ENST00000969668, ENST00000969669, ENST00000969670, ENST00000969671, ENST00000969672, ENST00000969673, ENST00000969674, ENST00000969675, ENST00000969676, ENST00000969677
RefSeq mRNA: 5 — MANE Select: NM_053013
NM_001193503, NM_001374523, NM_001374524, NM_001976, NM_053013
CCDS: CCDS11062, CCDS54070
Canonical transcript exons
ENST00000519602 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000676427 | 4955407 | 4955604 |
| ENSE00002126954 | 4951119 | 4951182 |
| ENSE00002161731 | 4955942 | 4956143 |
| ENSE00003514876 | 4953051 | 4953109 |
| ENSE00003552248 | 4956573 | 4956681 |
| ENSE00003573214 | 4955075 | 4955297 |
| ENSE00003585178 | 4956831 | 4956889 |
| ENSE00003590855 | 4953272 | 4953341 |
| ENSE00003596339 | 4952795 | 4952890 |
| ENSE00003786745 | 4953712 | 4953845 |
| ENSE00003799520 | 4951828 | 4951914 |
| ENSE00003898334 | 4956978 | 4957129 |
Expression profiles
Bgee: expression breadth ubiquitous, 203 present calls, max score 99.96.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 34.7064 / max 7752.6791, expressed in 1623 samples.
FANTOM5 promoters (11 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 158991 | 29.5571 | 522 |
| 208037 | 2.0444 | 1170 |
| 158993 | 0.6705 | 78 |
| 158988 | 0.6446 | 335 |
| 158992 | 0.4950 | 53 |
| 158989 | 0.4757 | 232 |
| 158990 | 0.3663 | 112 |
| 158987 | 0.3186 | 173 |
| 158998 | 0.0629 | 16 |
| 158995 | 0.0435 | 14 |
Top tissues by expression
290 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 99.96 | gold quality |
| biceps brachii | UBERON:0001507 | 99.92 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 99.90 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 99.89 | gold quality |
| triceps brachii | UBERON:0001509 | 99.88 | gold quality |
| gluteal muscle | UBERON:0002000 | 99.85 | gold quality |
| diaphragm | UBERON:0001103 | 99.80 | gold quality |
| apex of heart | UBERON:0002098 | 99.69 | gold quality |
| gastrocnemius | UBERON:0001388 | 99.68 | gold quality |
| body of tongue | UBERON:0011876 | 99.68 | gold quality |
| heart right ventricle | UBERON:0002080 | 99.02 | gold quality |
| vastus lateralis | UBERON:0001379 | 98.78 | gold quality |
| heart left ventricle | UBERON:0002084 | 98.74 | gold quality |
| cardiac ventricle | UBERON:0002082 | 98.73 | gold quality |
| right atrium auricular region | UBERON:0006631 | 98.61 | gold quality |
| muscle of leg | UBERON:0001383 | 98.40 | gold quality |
| muscle organ | UBERON:0001630 | 98.23 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 98.21 | gold quality |
| right lobe of liver | UBERON:0001114 | 97.26 | gold quality |
| quadriceps femoris | UBERON:0001377 | 97.24 | gold quality |
| heart | UBERON:0000948 | 96.52 | gold quality |
| cardiac atrium | UBERON:0002081 | 96.21 | gold quality |
| granulocyte | CL:0000094 | 95.83 | gold quality |
| muscle tissue | UBERON:0002385 | 93.99 | gold quality |
| deltoid | UBERON:0001476 | 93.85 | gold quality |
| metanephros cortex | UBERON:0010533 | 93.33 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 92.43 | gold quality |
| liver | UBERON:0002107 | 91.70 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 91.67 | gold quality |
| tongue | UBERON:0001723 | 90.89 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-112 | yes | 33582.86 |
| E-MTAB-7407 | yes | 12093.06 |
| E-GEOD-124472 | yes | 1574.23 |
| E-MTAB-9543 | yes | 33.02 |
| E-MTAB-8060 | no | 45.78 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): FOXC1, NFIX, NR4A1, PAX7, SP3, ZNF148
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity Not yet evaluated (unscored). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 5)
- Pyridoxamine and carnosine protected enolase against the total loss of catalytic activity. (PMID:21347838)
- Molecular genetic analysis of ENO3 gene revealed two novel homozygous missense mutations, (p.Asn151Ser and p.Glu187Lys)in patients presenting with recurrent rhabdomyolysis. (PMID:25267339)
- tRK1 forms a complex with human enolases and interacts with tRK1 and human pre-lysyl-tRNA synthetase (preKARS2) (PMID:25918939)
- Enolase 3 (ENO3) overexpression under serine/threonine kinase 11 (STK11) loss-of-function mutations implies that ENO3 might be a selective anticancer target in STK11-mutant cancer. (PMID:31697874)
- ENO3 promotes colorectal cancer progression by enhancing cell glycolysis. (PMID:35477821)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | eno3 | ENSDARG00000039007 |
| mus_musculus | Eno3 | ENSMUSG00000060600 |
| rattus_norvegicus | Eno3 | ENSRNOG00000004078 |
| drosophila_melanogaster | Eno | FBGN0000579 |
| caenorhabditis_elegans | WBGENE00011884 |
Paralogs (3): ENO1 (ENSG00000074800), ENO2 (ENSG00000111674), ENO4 (ENSG00000188316)
Protein
Protein identifiers
Beta-enolase — P13929 (reviewed: P13929)
Alternative names: 2-phospho-D-glycerate hydro-lyase, Enolase 3, Muscle-specific enolase, Skeletal muscle enolase
All UniProt accessions (8): P13929, E5RG95, E5RGZ4, E5RI09, E5RJH5, K7EKN2, K7EP84, K7EPM1
UniProt curated annotations — full annotation on UniProt →
Function. Enolase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate in glycolysis and the reverse reaction in gluconeogenesis. Appears to have a function in striated muscle development and regeneration.
Subunit / interactions. Mammalian enolase is composed of 3 isozyme subunits, alpha, beta and gamma, which can form homodimers or heterodimers which are cell-type and development-specific. Interacts with PNKD.
Subcellular location. Cytoplasm.
Tissue specificity. The alpha/alpha homodimer is expressed in embryo and in most adult tissues. The alpha/beta heterodimer and the beta/beta homodimer are found in striated muscle, and the alpha/gamma heterodimer and the gamma/gamma homodimer in neurons.
Disease relevance. Glycogen storage disease 13 (GSD13) [MIM:612932] A metabolic disorder that results in exercise-induced myalgias, generalized muscle weakness and fatigability. It is characterized by increased serum creatine kinase and decreased enolase 3 activity. Dramatically reduced protein levels with focal sarcoplasmic accumulation of glycogen-beta particles are detected on ultrastructural analysis. The disease is caused by variants affecting the gene represented in this entry.
Cofactor. Mg(2+) is required for catalysis and for stabilizing the dimer.
Pathway. Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 4/5.
Similarity. Belongs to the enolase family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P13929-1 | 1 | yes |
| P13929-2 | 2 | |
| P13929-3 | 3 |
RefSeq proteins (5): NP_001180432, NP_001361452, NP_001361453, NP_001967, NP_443739* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000941 | Enolase | Family |
| IPR020809 | Enolase_CS | Conserved_site |
| IPR020810 | Enolase_C | Domain |
| IPR020811 | Enolase_N | Domain |
| IPR029017 | Enolase-like_N | Homologous_superfamily |
| IPR036849 | Enolase-like_C_sf | Homologous_superfamily |
Pfam: PF00113, PF03952
Catalyzed reactions (Rhea), 1 shown:
- (2R)-2-phosphoglycerate = phosphoenolpyruvate + H2O (RHEA:10164)
UniProt features (65 total): helix 20, strand 13, binding site 9, modified residue 9, sequence variant 4, turn 4, active site 2, splice variant 2, initiator methionine 1, chain 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2XSX | X-RAY DIFFRACTION | 1.7 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P13929-F1 | 97.63 | 0.98 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 210 (proton donor); 343 (proton acceptor)
Ligand- & substrate-binding residues (9): 318; 370–373; 394; 158; 167; 245; 293; 293; 318
Post-translational modifications (9): 2, 72, 83, 157, 176, 205, 229, 236, 263
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-70171 | Glycolysis |
| R-HSA-70263 | Gluconeogenesis |
MSigDB gene sets: 294 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_DN, CREL_01, GOBP_NUCLEOSIDE_DIPHOSPHATE_METABOLIC_PROCESS, CHIARADONNA_NEOPLASTIC_TRANSFORMATION_KRAS_DN, MYOGENIN_Q6, RORA1_01, GCANCTGNY_MYOD_Q6, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_DN, GOBP_CARBOHYDRATE_DERIVATIVE_CATABOLIC_PROCESS, GOBP_MONOSACCHARIDE_CATABOLIC_PROCESS, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, TGACCTY_ERR1_Q2, KEGG_GLYCOLYSIS_GLUCONEOGENESIS, GOBP_MONOCARBOXYLIC_ACID_METABOLIC_PROCESS, USF_C
GO Biological Process (4): gluconeogenesis (GO:0006094), glycolytic process (GO:0006096), canonical glycolysis (GO:0061621), substantia nigra development (GO:0021762)
GO Molecular Function (5): magnesium ion binding (GO:0000287), phosphopyruvate hydratase activity (GO:0004634), protein binding (GO:0005515), lyase activity (GO:0016829), metal ion binding (GO:0046872)
GO Cellular Component (7): phosphopyruvate hydratase complex (GO:0000015), obsolete extracellular space (GO:0005615), cytosol (GO:0005829), plasma membrane (GO:0005886), membrane (GO:0016020), extracellular exosome (GO:0070062), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Glucose metabolism | 2 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| glucose metabolic process | 1 |
| hexose biosynthetic process | 1 |
| phosphoglycerate kinase activity | 1 |
| phosphoglycerate mutase activity | 1 |
| phosphopyruvate hydratase activity | 1 |
| pyruvate kinase activity | 1 |
| pyruvate metabolic process | 1 |
| generation of precursor metabolites and energy | 1 |
| aerobic respiration | 1 |
| carbohydrate catabolic process | 1 |
| pyridine nucleotide catabolic process | 1 |
| glyceraldehyde-3-phosphate dehydrogenase [NAD(P)+] (phosphorylating) activity | 1 |
| ADP catabolic process | 1 |
| ATP metabolic process | 1 |
| nicotinamide nucleotide metabolic process | 1 |
| glucokinase activity | 1 |
| glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 1 |
| glucose catabolic process | 1 |
| glycolytic process through glucose-6-phosphate | 1 |
| midbrain development | 1 |
| neural nucleus development | 1 |
| metal ion binding | 1 |
| hydro-lyase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| cytosol | 1 |
| catalytic complex | 1 |
| cytoplasm | 1 |
| membrane | 1 |
| cell periphery | 1 |
| extracellular vesicle | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
4422 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ENO3 | ALDOA | P04075 | 805 |
| ENO3 | PGM1 | P36871 | 773 |
| ENO3 | PGAM2 | P15259 | 741 |
| ENO3 | TPI1 | P00938 | 728 |
| ENO3 | CKM | P06732 | 714 |
| ENO3 | PGAM1 | P18669 | 706 |
| ENO3 | PGAM4 | Q8N0Y7 | 702 |
| ENO3 | MYH1 | P12882 | 691 |
| ENO3 | AK2 | P54819 | 676 |
| ENO3 | J3KPS3 | J3KPS3 | 672 |
| ENO3 | PGK1 | P00558 | 668 |
| ENO3 | PFKM | P08237 | 653 |
| ENO3 | PYGM | P11217 | 643 |
| ENO3 | ALDOC | P09972 | 626 |
| ENO3 | PKM | P14618 | 610 |
IntAct
56 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ENO1 | ENO2 | psi-mi:“MI:0914”(association) | 0.710 |
| ENO2 | ENO1 | psi-mi:“MI:0914”(association) | 0.710 |
| ENO3 | ENO1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DLD | PDHB | psi-mi:“MI:0914”(association) | 0.530 |
| HSPB8 | VWA8 | psi-mi:“MI:0914”(association) | 0.530 |
| VAPB | psi-mi:“MI:0914”(association) | 0.500 | |
| PDE4DIP | ENO3 | psi-mi:“MI:0915”(physical association) | 0.440 |
| ENO3 | PDE4DIP | psi-mi:“MI:0403”(colocalization) | 0.440 |
| HSPB2 | ENO3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| Cep152 | SH3PXD2B | psi-mi:“MI:0914”(association) | 0.350 |
| DLD | NFKBIE | psi-mi:“MI:0914”(association) | 0.350 |
| DLST | psi-mi:“MI:0914”(association) | 0.350 | |
| HSD17B10 | HMGB1P1 | psi-mi:“MI:0914”(association) | 0.350 |
| SOD1 | NPEPPSL1 | psi-mi:“MI:0914”(association) | 0.350 |
| DLD | EIF3D | psi-mi:“MI:0914”(association) | 0.350 |
| HSD17B10 | HNRNPDL | psi-mi:“MI:0914”(association) | 0.350 |
| DLD | IRS4 | psi-mi:“MI:0914”(association) | 0.350 |
| SOD1 | PGK1 | psi-mi:“MI:0914”(association) | 0.350 |
| CAMK2D | OGT | psi-mi:“MI:0914”(association) | 0.350 |
| IQCB1 | PCP4L1 | psi-mi:“MI:0914”(association) | 0.350 |
| MAPT | SHTN1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (152): ENO3 (Affinity Capture-MS), AKR1B1 (Co-fractionation), ATP5J (Co-fractionation), CALR (Co-fractionation), CAT (Co-fractionation), DUT (Co-fractionation), EEF1A1 (Co-fractionation), ENO2 (Co-fractionation), ENO3 (Co-fractionation), ENO3 (Co-fractionation), ENO3 (Co-fractionation), ENO3 (Co-fractionation), ENO3 (Co-fractionation), ENO3 (Co-fractionation), ENO3 (Co-fractionation)
ESM2 similar proteins: A0KU82, A3QC77, A5FRM5, A6GZ69, A8FSS8, A9NF93, B0S8S8, B0SRL5, B1JB38, B1KPT6, B3PJB3, B5DGQ7, I0J1J1, P04764, P06733, P13929, P17182, P26300, P30575, P33676, P42896, P51913, Q01YD1, Q04SI9, Q050L5, Q0HL72, Q0HXH0, Q12PZ4, Q15QR6, Q27655, Q27877, Q3KH92, Q3Z8W4, Q3ZX11, Q48F79, Q4KHF6, Q4R5L2, Q4ZWQ8, Q5R6Y1, Q6MPQ2
Diamond homologs: A0A509AQ68, A6LJF0, A6TU30, B5DGQ7, B6YUB8, B7IFN4, C1KY94, C5A2S7, I0J1J1, O02654, O57391, O59605, O74286, P00924, P00925, P04764, P06733, P07322, P07323, P08734, P09104, P0CX10, P0CX11, P13929, P15007, P15429, P17182, P17183, P19140, P21550, P25696, P25704, P26300, P26301, P30575, P31683, P33676, P40370, P42040, P42222
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| “MYOD1/SWI/SNF complex” | “up-regulates quantity by expression” | ENO3 | “transcriptional regulation” |
| ENO3 | “up-regulates quantity” | phosphonatoenolpyruvate | “chemical modification” |
| ENO3 | “down-regulates quantity” | 2-phosphonato-D-glycerate(3-) | “chemical modification” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 58 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Glycolysis | 5 | 31.7× | 1e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| canonical glycolysis | 5 | 71.7× | 2e-06 |
| glycolytic process | 6 | 46.9× | 2e-06 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
414 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 2 |
| Uncertain significance | 195 |
| Likely benign | 160 |
| Benign | 28 |
Top pathogenic / likely-pathogenic (4)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1285634 | NM_053013.4(ENO3):c.1070G>A (p.Cys357Tyr) | Pathogenic |
| 916552 | NM_053013.4(ENO3):c.1037_1041dup (p.Gly348fs) | Pathogenic |
| 1163998 | NM_053013.4(ENO3):c.157del (p.Asp53fs) | Likely pathogenic |
| 3068091 | NM_053013.4(ENO3):c.1176+2T>C | Likely pathogenic |
SpliceAI
1931 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:4951826:A:AG | acceptor_gain | 1.0000 |
| 17:4951827:G:GG | acceptor_gain | 1.0000 |
| 17:4951827:GCC:G | acceptor_gain | 1.0000 |
| 17:4951827:GCCAT:G | acceptor_gain | 1.0000 |
| 17:4951913:GG:G | donor_gain | 1.0000 |
| 17:4951914:GG:G | donor_gain | 1.0000 |
| 17:4953212:T:G | acceptor_gain | 1.0000 |
| 17:4953256:A:AG | acceptor_gain | 1.0000 |
| 17:4953340:GT:G | donor_gain | 1.0000 |
| 17:4953342:G:GG | donor_gain | 1.0000 |
| 17:4953710:A:AG | acceptor_gain | 1.0000 |
| 17:4953711:G:GG | acceptor_gain | 1.0000 |
| 17:4953711:GCCAA:G | acceptor_gain | 1.0000 |
| 17:4953842:GCCA:G | donor_gain | 1.0000 |
| 17:4953846:G:GG | donor_gain | 1.0000 |
| 17:4955296:GG:G | donor_gain | 1.0000 |
| 17:4955297:GG:G | donor_gain | 1.0000 |
| 17:4955403:CCAGC:C | acceptor_loss | 1.0000 |
| 17:4955404:CAG:C | acceptor_loss | 1.0000 |
| 17:4955405:A:AG | acceptor_gain | 1.0000 |
| 17:4955406:G:GT | acceptor_gain | 1.0000 |
| 17:4955406:GC:G | acceptor_gain | 1.0000 |
| 17:4955406:GCC:G | acceptor_gain | 1.0000 |
| 17:4955406:GCCC:G | acceptor_gain | 1.0000 |
| 17:4955406:GCCCT:G | acceptor_gain | 1.0000 |
| 17:4955504:G:GT | donor_gain | 1.0000 |
| 17:4955504:G:T | donor_gain | 1.0000 |
| 17:4955573:GCT:G | donor_gain | 1.0000 |
| 17:4955601:CCTGG:C | donor_loss | 1.0000 |
| 17:4955602:CTGG:C | donor_loss | 1.0000 |
AlphaMissense
1843 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:4951873:G:C | R15T | 1.000 |
| 17:4951873:G:T | R15M | 1.000 |
| 17:4951874:G:C | R15S | 1.000 |
| 17:4951874:G:T | R15S | 1.000 |
| 17:4952821:G:A | G38R | 1.000 |
| 17:4952821:G:C | G38R | 1.000 |
| 17:4952821:G:T | G38W | 1.000 |
| 17:4952822:G:A | G38E | 1.000 |
| 17:4952844:G:C | E45D | 1.000 |
| 17:4952844:G:T | E45D | 1.000 |
| 17:4955083:T:A | N151K | 1.000 |
| 17:4955083:T:G | N151K | 1.000 |
| 17:4955092:C:A | N154K | 1.000 |
| 17:4955092:C:G | N154K | 1.000 |
| 17:4955093:G:T | G155W | 1.000 |
| 17:4955094:G:A | G155E | 1.000 |
| 17:4955094:G:T | G155V | 1.000 |
| 17:4955102:C:G | H158D | 1.000 |
| 17:4955104:T:A | H158Q | 1.000 |
| 17:4955104:T:G | H158Q | 1.000 |
| 17:4955128:G:C | Q166H | 1.000 |
| 17:4955128:G:T | Q166H | 1.000 |
| 17:4955130:A:T | E167V | 1.000 |
| 17:4955252:G:C | G208R | 1.000 |
| 17:4955261:G:C | G211R | 1.000 |
| 17:4955274:C:A | P215H | 1.000 |
| 17:4955472:G:C | D245H | 1.000 |
| 17:4955473:A:C | D245A | 1.000 |
| 17:4955473:A:T | D245V | 1.000 |
| 17:4951866:G:C | D13H | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000193829 (17:4948143 G>A,C,T), RS1000649118 (17:4947960 T>C), RS1000983970 (17:4954890 C>A,T), RS1001243515 (17:4947457 A>C), RS1001247393 (17:4948788 C>T), RS1001593862 (17:4949021 G>C,T), RS1001631432 (17:4953518 C>A,G,T), RS1002072644 (17:4953886 A>C), RS1002162944 (17:4949095 G>A), RS1002198573 (17:4949953 G>A,C), RS1002639077 (17:4954687 G>A), RS1002657497 (17:4949773 C>T), RS1002689719 (17:4954485 G>A), RS1002743303 (17:4951513 C>T), RS1002817546 (17:4947282 G>A,C,T)
Disease associations
OMIM: gene MIM:131370 | disease phenotypes: MIM:612932
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| glycogen storage disease due to muscle beta-enolase deficiency | Strong | Autosomal recessive |
Mondo (1): glycogen storage disease due to muscle beta-enolase deficiency (MONDO:0013046)
Orphanet (1): Glycogen storage disease due to muscle beta-enolase deficiency (Orphanet:99849)
HPO phenotypes
7 total (7 of 7 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0003236 | Elevated circulating creatine kinase concentration |
| HP:0003326 | Myalgia |
| HP:0003546 | Exercise intolerance |
| HP:0003581 | Adult onset |
| HP:0009051 | Increased muscle glycogen content |
| HP:0034633 | Reduced muscle enolase activity |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST90002404_348 | Red cell distribution width | 1.000000e-09 |
| GCST90013442_27 | Keratoconus | 2.000000e-14 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009188 | Red cell distribution width |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C567861 | Glycogen Storage Disease XIII (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
70 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects expression, decreases expression, increases expression | 3 |
| trichostatin A | affects cotreatment, decreases expression | 3 |
| sodium arsenite | affects expression, affects cotreatment, decreases expression, increases expression | 3 |
| Benzo(a)pyrene | decreases expression, decreases methylation | 3 |
| Valproic Acid | affects cotreatment, decreases expression | 3 |
| Cyclosporine | decreases expression | 3 |
| Cisplatin | affects expression, affects cotreatment, decreases expression | 2 |
| Estradiol | decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| p-Chloromercuribenzoic Acid | affects cotreatment, decreases expression | 2 |
| Particulate Matter | decreases expression, increases abundance | 2 |
| aristolochic acid I | increases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| daidzein | decreases expression | 1 |
| propionaldehyde | increases expression | 1 |
| glycidyl methacrylate | decreases expression | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| beta-lapachone | decreases expression | 1 |
| sulforaphane | decreases expression | 1 |
| butyraldehyde | increases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| dinophysistoxin 1 | increases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| entinostat | increases expression | 1 |
| K 7174 | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| obeticholic acid | increases expression | 1 |
| perfluorohexanesulfonic acid | decreases expression | 1 |
| ICG 001 | increases expression | 1 |
| abrine | increases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: glycogen storage disease due to muscle beta-enolase deficiency
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): glycogen storage disease due to muscle beta-enolase deficiency