ENPP1

gene
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Also known as PC-1PCA1

Summary

ENPP1 (ectonucleotide pyrophosphatase/phosphodiesterase 1, HGNC:3356) is a protein-coding gene on chromosome 6q23.2, encoding Ectonucleotide pyrophosphatase/phosphodiesterase family member 1 (P22413). Nucleotide pyrophosphatase that generates diphosphate (PPi) and functions in bone mineralization and soft tissue calcification by regulating pyrophosphate levels.

This gene is a member of the ecto-nucleotide pyrophosphatase/phosphodiesterase (ENPP) family. The encoded protein is a type II transmembrane glycoprotein comprising two identical disulfide-bonded subunits. This protein has broad specificity and cleaves a variety of substrates, including phosphodiester bonds of nucleotides and nucleotide sugars and pyrophosphate bonds of nucleotides and nucleotide sugars. This protein may function to hydrolyze nucleoside 5’ triphosphates to their corresponding monophosphates and may also hydrolyze diadenosine polyphosphates. Mutations in this gene have been associated with ‘idiopathic’ infantile arterial calcification, ossification of the posterior longitudinal ligament of the spine (OPLL), and insulin resistance.

Source: NCBI Gene 5167 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): arterial calcification, generalized, of infancy, 1 (Definitive, ClinGen) — +5 more curated relationships
  • GWAS associations: 2
  • Clinical variants (ClinVar): 935 total — 55 pathogenic, 35 likely-pathogenic
  • Phenotypes (HPO): 168
  • Druggable target: yes — 1 molecules with ChEMBL bioactivity
  • Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
  • MANE Select transcript: NM_006208

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:3356
Approved symbolENPP1
Nameectonucleotide pyrophosphatase/phosphodiesterase 1
Location6q23.2
Locus typegene with protein product
StatusApproved
AliasesPC-1, PCA1
Ensembl geneENSG00000197594
Ensembl biotypeprotein_coding
OMIM173335
Entrez5167

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 5 retained_intron, 4 nonsense_mediated_decay, 2 protein_coding, 2 protein_coding_CDS_not_defined

ENST00000459624, ENST00000486853, ENST00000513998, ENST00000647893, ENST00000647981, ENST00000650147, ENST00000650437, ENST00000650507, ENST00000683687, ENST00000684147, ENST00000684536, ENST00000684674, ENST00000922186

RefSeq mRNA: 1 — MANE Select: NM_006208 NM_006208

CCDS: CCDS5150

Canonical transcript exons

ENST00000647893 — 25 exons

ExonStartEnd
ENSE00000763731131864866131864938
ENSE00000763735131861595131861704
ENSE00000763737131860387131860506
ENSE00000763739131858668131858747
ENSE00001147074131854926131855023
ENSE00001147082131852175131852235
ENSE00001147089131851142131851267
ENSE00001388381131890341131895155
ENSE00003459242131872923131873050
ENSE00003477160131864506131864571
ENSE00003478626131883694131883774
ENSE00003480135131879880131880034
ENSE00003497377131882345131882474
ENSE00003551547131849990131850106
ENSE00003565246131886562131886724
ENSE00003586924131847776131847848
ENSE00003587062131874268131874337
ENSE00003589126131878542131878593
ENSE00003601053131884931131885063
ENSE00003607573131876992131877161
ENSE00003620099131869358131869489
ENSE00003628761131875776131875863
ENSE00003641164131868018131868126
ENSE00003642026131872070131872101
ENSE00003834150131808020131808275

Expression profiles

Bgee: expression breadth ubiquitous, 227 present calls, max score 98.09.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 7.2821 / max 801.1181, expressed in 1012 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter IDTPM avgSamples expressed
698007.28211012

Top tissues by expression

284 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
tibiaUBERON:000097998.09gold quality
deciduaUBERON:000245095.52gold quality
cartilage tissueUBERON:000241895.28gold quality
cauda epididymisUBERON:000436093.64gold quality
calcaneal tendonUBERON:000370193.60gold quality
tendon of biceps brachiiUBERON:000818893.04gold quality
liverUBERON:000210792.16gold quality
tendonUBERON:000004391.73gold quality
right lobe of liverUBERON:000111490.65gold quality
synovial jointUBERON:000221789.94gold quality
placentaUBERON:000198789.31gold quality
corpus epididymisUBERON:000435988.99gold quality
body of uterusUBERON:000985387.39gold quality
myometriumUBERON:000129687.25gold quality
layer of synovial tissueUBERON:000761687.01gold quality
buccal mucosa cellCL:000233685.78gold quality
periodontal ligamentUBERON:000826685.15gold quality
primordial germ cell in gonadCL:0000670 ∩ UBERON:000099185.13gold quality
caput epididymisUBERON:000435884.93gold quality
body of pancreasUBERON:000115084.24gold quality
descending thoracic aortaUBERON:000234584.12gold quality
stromal cell of endometriumCL:000225583.97gold quality
thyroid glandUBERON:000204683.60gold quality
tracheaUBERON:000312683.39gold quality
mammary ductUBERON:000176583.21gold quality
amniotic fluidUBERON:000017382.96gold quality
epithelium of mammary glandUBERON:000324482.86gold quality
smooth muscle tissueUBERON:000113582.53gold quality
pancreasUBERON:000126482.49gold quality
uterusUBERON:000099582.37gold quality

Single-cell (SCXA)

Detected in 8 experiment(s), a significant marker in 6.

ExperimentMarker?Max mean expression
E-MTAB-9801yes412.30
E-MTAB-10290yes211.53
E-MTAB-6701yes67.66
E-ANND-3yes17.49
E-MTAB-6678yes7.07
E-CURD-112yes5.81
E-GEOD-70580no629.47
E-MTAB-8271no522.74

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): AP1, FGF2, IL1B, JUN, MSX2, RUNX2, TGFB1

miRNA regulators (miRDB)

191 targeting ENPP1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3613-3P100.0076.367965
HSA-MIR-3163100.0077.238605
HSA-MIR-7110-3P100.0073.182486
HSA-MIR-6873-3P100.0071.422626
HSA-MIR-4768-5P100.0069.492861
HSA-MIR-6833-3P100.0070.633197
HSA-MIR-5692A100.0074.406850
HSA-MIR-513A-5P100.0069.772465
HSA-MIR-196A-5P100.0068.16684
HSA-MIR-196B-5P100.0068.16681
HSA-MIR-4262100.0073.263931
HSA-MIR-371B-5P99.9975.344759
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-6759-5P99.9966.54785
HSA-MIR-453199.9969.703181
HSA-MIR-428299.9975.366408
HSA-MIR-4789-3P99.9970.752484
HSA-MIR-6870-5P99.9968.552115
HSA-MIR-373-5P99.9875.364753
HSA-MIR-616-5P99.9875.584775
HSA-MIR-477599.9875.006394
HSA-MIR-520D-5P99.9873.344883
HSA-MIR-524-5P99.9873.434882
HSA-MIR-60799.9773.625593
HSA-MIR-314899.9775.066478
HSA-MIR-4723-5P99.9768.702034
HSA-MIR-1229-3P99.9766.49906
HSA-MIR-3688-3P99.9772.022834
HSA-MIR-548AN99.9770.912817
HSA-MIR-569899.9768.492029

Functional genomics

ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map

Literature-anchored findings (GeneRIF, showing 40)

  • The IVS15-14T –> C substitution in the human NPPS gene is associated not only with susceptibility to, but also with severity of OPLL. (PMID:11771660)
  • polymorphic in normoalbuminuric type 1 diabetic patients (PMID:12126783)
  • in type 1 diabetic patients, the ACE and the PC-1 genes interact in increasing the individual risk of having a faster diabetic nephropathy progression (PMID:12147786)
  • Amino acid variant (K121Q) has no impact on progression of diabetic nephropathy in type 1 diabetic patients (PMID:12147787)
  • Insulin modulates PC-1 processing and recruitment in cultured human cells.autophosphorylation. Insulin stimulates PC-1 posttranslational processing and translocation to the plasma membrane, which in turn impairs insulin receptor signaling. (PMID:12441313)
  • PC1 has a role in predisposition to early myocardial infarction (PMID:12483464)
  • In healthy normoglycemic Finnish subjects, the K121Q polymorphism of the PC-1 gene is associated with insulin resistance but not with impaired insulin secretion or dyslipidemia. (PMID:12547881)
  • study suggests that both examined polymorphisms: the -308 G/A in the promoter region of TNF-alpha and K121Q amino acid variant of the PC-1 influence the development of insulin resistance as a prediabetic quantitative trait in a Polish population (PMID:12715715)
  • Mutations in ENPP1 are associated with ‘idiopathic’ infantile arterial calcification. (PMID:12881724)
  • PC-1 K121Q polymorphism associates with primary insulin resistance in migrant Asian Indians. High frequency of this polymorphism may be one factor contributing to insulin resistance susceptibility in Asian Indians. (PMID:14671192)
  • PC-1 Q121 allele is exceptionally prevalent in the Dominican Republic, contributing to both insulin resistance and type 2 diabetes. (PMID:15001634)
  • Interaction between the K121Q polymorphism of the PC-1 gene and birth length affects insulin sensitivity and increases susceptibility to type 2 diabetes and hypertension in adulthood (PMID:15126519)
  • The K121Q polymorphism of the plasma cell membrane glycoprotein 1 gene is significantly associated with polycystic ovary syndrome (PCOS) susceptibility. (PMID:15374726)
  • Plays a role in insulin resistance and suggests that animals with overexpression of human PC-1 in liver may be interesting models to investigate insulin resistance and glucose intolerance. (PMID:15677494)
  • Our study supports the hypothesis that ENPP1 121Q predicts genetic susceptibility to type 2 diabetes in both South Asians and Caucasians. (PMID:15793263)
  • Increased lymphocyte PC-1 activity was associated with end-stage renal failure patients on haemodialysis (PMID:15802034)
  • The IVS20-11delT variant of the NPPS gene and the A861G variant of the leptin receptor gene are associated with more extensive OPLL, but not with the frequency with which it occurs. (PMID:15834329)
  • ectonucleotide pyrophosphatase/phosphodiesterase 1(ENPP1/PC-1) 121Q variant is associated with a progressive deterioration of the insulin resistance-atherogenic phenotype and earlier onset of type 2 diabetes and myocardial infarction (PMID:16186408)
  • The K121Q polymorphism of the plasma cell membrane glycoprotein-1 (PC-1) gene is unlikely to be a major genetic factor predisposing to preeclampsia in Finnish women. (PMID:16272817)
  • Overexpression of ENPP1 induces insulin resistance and hyperglycemia. (PMID:16278247)
  • Analysis of the DNA variations of ENPP1 provides a first molecular basis for the physiopathologic association between severe insulin resistance and obesity, and further type 2 diabetes. (PMID:16527214)
  • the K121Q variant of the ENPP1 gene has very little, if any, impact on type 2 diabetes (T2D) susceptibility in Japanese, but may play a role in the inter-ethnic variability in insulin resistance and T2D (PMID:16607460)
  • the ENPP1 K121Q polymorphism does not seem to influence the risk of insulin resistance or type 2 diabetes in Danish white subjects; however, a meta-analysis of the present and published studies demonstrates evidence of association with type 2 diabetes (PMID:16865358)
  • we found a new SNP, rs997509, in intron 1 that is strongly associated with risk of type 2 diabetes in obese individuals. (PMID:16936213)
  • role of the K121Q polymorphism or derived ENPP1 haplotypes in increased susceptibility to obesity and early impairment of glucose and insulin metabolism in children. (PMID:16968801)
  • a significant association of PC-1 K121Q with obesity (PMID:17026496)
  • No evidence that previously associated variants of ENPP1 are associated with type 2 diabetes or obesity in the U.K. population. (PMID:17065358)
  • No association with three variants and body mass index or type 2 diabetes. (PMID:17065359)
  • PC-1 (ENPP1) 121Q allele is associated with the genetic susceptibility for metabolic syndrome in patients with coronary heart disease (PMID:17129580)
  • Ectonucleotide pyrophosphatase phosphodiesterase 1 as a ‘gatekeeper’ of insulin receptors. (PMID:17143316)
  • There is a lack of correlation between genetic expression of ENPP1 and body mass index. This may suggest that glucose metabolism is more complex than lipid metabolism. (PMID:17287921)
  • THE 121Q allele frequency may contribute to increased susceptibility to type 2 diabetes observed in US minority groups. (PMID:17493546)
  • Overexpression of ENPP1 in insulin target tissues is an early, intrinsic defect observed in human insulin resistance (PMID:17563456)
  • functional interactions between alkaline phosphatase and ENPP1(PC-1) may link insulin resistance to vascular calcification. (PMID:17606264)
  • Nominal evidence of association between the K121Q polymorphism and both severe adult obesity at baseline and risk of hyperglycaemia or type 2 diabetes . (PMID:17704904)
  • Our results suggest that the ENPP1121Q allele might contribute to the genetic susceptibility to abdominal obesity among subjects with MS. (PMID:17986276)
  • The ENPP1 Q121 variant increases risk of type 2 diabetes under a recessive model of inheritance in whites, an effect that appears to be modulated by body mass index. (PMID:18071025)
  • K121Q polymorphism is more common among Afro-Brazilian descendants regardless of glycemic status or insulin sensitivity indices. Likewise, insulin sensitivity and DM chronic complications appear not to be related to the polymorphism in this sample. (PMID:18176722)
  • Variants in the distal region of the ENPP1 gene may contribute to diabetes or diabetic nephropathy susceptibility in African Americans. (PMID:18184924)
  • Results describe the activities of ectonucleotide pyrophosphatase/phosphodiesterase and adenosine deaminase in patients with uterine cervix neoplasia. (PMID:18222177)

Cross-species orthologs

6 orthologs

OrganismSymbolGene ID
danio_rerioenpp1ENSDARG00000005789
mus_musculusEnpp1ENSMUSG00000037370
rattus_norvegicusEnpp1ENSRNOG00000013994
caenorhabditis_elegansWBGENE00007753
caenorhabditis_elegansWBGENE00007755
caenorhabditis_elegansWBGENE00015283

Paralogs (6): ENPP4 (ENSG00000001561), ENPP5 (ENSG00000112796), ENPP2 (ENSG00000136960), ENPP3 (ENSG00000154269), ENPP6 (ENSG00000164303), ENPP7 (ENSG00000182156)

Protein

Protein identifiers

Ectonucleotide pyrophosphatase/phosphodiesterase family member 1P22413 (reviewed: P22413)

Alternative names: Alkaline phosphodiesterase I, Membrane component chromosome 6 surface marker 1, Nucleotide diphosphatase, Nucleotide pyrophosphatase, Phosphodiesterase I/nucleotide pyrophosphatase 1, Plasma-cell membrane glycoprotein PC-1

All UniProt accessions (5): A0A3B3ISN7, A0A3B3IST7, A0A3B3IU14, E9PE72, P22413

UniProt curated annotations — full annotation on UniProt →

Function. Nucleotide pyrophosphatase that generates diphosphate (PPi) and functions in bone mineralization and soft tissue calcification by regulating pyrophosphate levels. PPi inhibits bone mineralization and soft tissue calcification by binding to nascent hydroxyapatite crystals, thereby preventing further growth of these crystals. Preferentially hydrolyzes ATP, but can also hydrolyze other nucleoside 5’ triphosphates such as GTP, CTP and UTP to their corresponding monophosphates with release of pyrophosphate, as well as diadenosine polyphosphates, and also 3’,5’-cAMP to AMP. May also be involved in the regulation of the availability of nucleotide sugars in the endoplasmic reticulum and Golgi, and the regulation of purinergic signaling. Inhibits ectopic joint calcification and maintains articular chondrocytes by repressing hedgehog signaling; it is however unclear whether hedgehog inhibition is direct or indirect. Appears to modulate insulin sensitivity and function. Also involved in melanogenesis. Also able to hydrolyze 2’,3’-cGAMP (cyclic GMP-AMP), a second messenger that activates TMEM173/STING and triggers type-I interferon production. 2’,3’-cGAMP degradation takes place in the lumen or extracellular space, and not in the cytosol where it is produced; the role of 2’,3’-cGAMP hydrolysis is therefore unclear. Not able to hydrolyze the 2’,3’-cGAMP linkage isomer 3’-3’-cGAMP.

Subunit / interactions. Homodimer. Interacts with INSR; leading to inhibit INSR autophosphorylation and subsequent activation of INSR kinase activity. Monomeric.

Subcellular location. Cell membrane. Basolateral cell membrane Secreted.

Tissue specificity. Expressed in plasma cells and also in a number of non-lymphoid tissues, including the distal convoluted tubule of the kidney, chondrocytes and epididymis. Expressed in melanocytes but not in keratinocytes.

Post-translational modifications. Autophosphorylated as part of the catalytic cycle of phosphodiesterase/pyrophosphatase activity. N-glycosylated. The secreted form is produced through cleavage at Lys-103 by intracellular processing.

Disease relevance. Ossification of the posterior longitudinal ligament of the spine (OPLL) [MIM:602475] A calcification of the posterior longitudinal ligament of the spinal column, usually at the level of the cervical spine. Patients with OPLL frequently present with a severe myelopathy that can lead to tetraparesis. The disease is caused by variants affecting the gene represented in this entry. Arterial calcification of infancy, generalized, 1 (GACI1) [MIM:208000] A severe autosomal recessive disorder characterized by calcification of the internal elastic lamina of muscular arteries and stenosis due to myointimal proliferation. The disorder is often fatal within the first 6 months of life because of myocardial ischemia resulting in refractory heart failure. The disease is caused by variants affecting the gene represented in this entry. Type 2 diabetes mellitus (T2D) [MIM:125853] A multifactorial disorder of glucose homeostasis caused by a lack of sensitivity to insulin. Affected individuals usually have an obese body habitus and manifestations of a metabolic syndrome characterized by diabetes, insulin resistance, hypertension and hypertriglyceridemia. The disease results in long-term complications that affect the eyes, kidneys, nerves, and blood vessels. Disease susceptibility is associated with variants affecting the gene represented in this entry. Hypophosphatemic rickets, autosomal recessive, 2 (ARHR2) [MIM:613312] A hereditary form of hypophosphatemic rickets, a disorder of proximal renal tubule function that causes phosphate loss, hypophosphatemia and skeletal deformities, including rickets and osteomalacia unresponsive to vitamin D. Symptoms are bone pain, fractures and growth abnormalities. The disease is caused by variants affecting the gene represented in this entry. Cole disease (COLED) [MIM:615522] A rare autosomal dominant genodermatosis characterized by punctate keratoderma associated with irregularly shaped hypopigmented macules, which are typically found over the arms and legs but not the trunk or acral regions. Skin biopsies of palmoplantar lesions show hyperorthokeratosis, hypergranulosis, and acanthosis. Hypopigmented areas of skin, however, reveal a reduction in melanin content in keratinocytes but not in melanocytes, as well as hyperkeratosis and a normal number of melanocytes. Ultrastructurally, melanocytes show a disproportionately large number of melanosomes in the cytoplasm and dendrites, whereas keratinocytes show a paucity of these organelles, suggestive of impaired melanosome transfer. Some patients also exhibit calcinosis cutis or calcific tendinopathy. The disease is caused by variants affecting the gene represented in this entry.

Activity regulation. At low concentrations of ATP, a phosphorylated intermediate is formed which inhibits further hydrolysis.

Cofactor. Binds 2 Zn(2+) ions per subunit.

Domain organisation. The di-leucine motif is required for basolateral targeting in epithelial cells, and for targeting to matrix vesicles derived from mineralizing cells. The nuclease-like domain is most probably catalytically inactive as residues that are essential for catalysis in the DNA/RNA non-specific endonucleases are not conserved. However, it is required for the stability of the protein and the catalytic activity born by the phosphodiesterase domain.

Similarity. Belongs to the nucleotide pyrophosphatase/phosphodiesterase family.

RefSeq proteins (1): NP_006199* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR001212Somatomedin_B_domDomain
IPR001604Endo_G_ENPP1-like_domDomain
IPR002591Phosphodiest/P_TrfaseFamily
IPR017850Alkaline_phosphatase_core_sfHomologous_superfamily
IPR020436SMB_chordataDomain
IPR020821ENPP1-3/EXOG-like_nuc-likeDomain
IPR036024Somatomedin_B-like_dom_sfHomologous_superfamily
IPR044925His-Me_finger_sfHomologous_superfamily
IPR044929DNA/RNA_non-sp_Endonuclease_sfHomologous_superfamily

Pfam: PF01033, PF01223, PF01663

Enzyme classification (BRENDA):

  • EC 3.6.1.9 — nucleotide diphosphatase (BRENDA: 33 organisms, 282 substrates, 447 inhibitors, 181 Km, 58 kcat entries)

Substrate kinetics (BRENDA)

77 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.

SubstrateKm (mM)Measurements
ATP0.0062–7814
NAD+0.004–31.212
FAD0.005–1.810
UDP-GLUCOSE0.62–508
NADH0.042–207
THYMIDINE 5’-MONOPHOSPHATE P-NITROPHENYL ESTER0.066–207
UTP0.0566–337
4-NITROPHENYL-5’-THYMIDINE MONOPHOSPHATE0.0618–0.2225
4-NITROPHENYL-5’-TMP0.027–0.11854
AP3A0.0051–0.04954
ADENOSINE 5’-PHOSPHOSULFATE0.5–33
ADP0.18–4.33
ADP-GLUCOSE0.7–0.83
ADP-RIBOSE0.5–18.93
BIS(4-NITROPHENYL)PHOSPHATE2.1–33

Catalyzed reactions (Rhea), 8 shown:

  • ATP + H2O = AMP + diphosphate + H(+) (RHEA:14245)
  • a ribonucleoside 5’-triphosphate + H2O = a ribonucleoside 5’-phosphate + diphosphate + H(+) (RHEA:23996)
  • 3’,5’-cyclic AMP + H2O = AMP + H(+) (RHEA:25277)
  • CTP + H2O = CMP + diphosphate + H(+) (RHEA:27762)
  • GTP + H2O = GMP + diphosphate + H(+) (RHEA:29391)
  • UTP + H2O = UMP + diphosphate + H(+) (RHEA:29395)
  • P(1),P(4)-bis(5’-adenosyl) tetraphosphate + H2O = AMP + ATP + 2 H(+) (RHEA:32039)
  • 2’,3’-cGAMP + 2 H2O = GMP + AMP + 2 H(+) (RHEA:58808)

UniProt features (205 total): sequence variant 51, binding site 43, helix 31, strand 29, disulfide bond 16, turn 9, glycosylation site 9, region of interest 4, chain 2, topological domain 2, domain 2, site 2, short sequence motif 1, compositionally biased region 1, active site 1, transmembrane region 1, modified residue 1

Structure

Experimental structures (PDB)

7 structures.

PDBMethodResolution (Å)
6WFJX-RAY DIFFRACTION2.5
6WETX-RAY DIFFRACTION2.6
6WEUX-RAY DIFFRACTION2.65
6WEWX-RAY DIFFRACTION2.73
6WEVX-RAY DIFFRACTION2.9
8GHRELECTRON MICROSCOPY3.2
2YS0SOLUTION NMR

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P22413-F191.350.87

Antibody-complex structures (SAbDab): 18GHR

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (3): 256 (amp-threonine intermediate); 102–103 (cleavage); 915 (essential for catalytic activity)

Ligand- & substrate-binding residues (43): 218; 218; 256; 256; 256; 256; 256; 277; 277; 277; 277; 290

Post-translational modifications (1): 256

Disulfide bonds (16): 108–122, 112–140, 120–133, 126–132, 149–166, 154–184, 164–177, 170–176, 195–241, 203–415, 431–530, 480–868, 614–672, 626–726, 628–711, 838–848

Glycosylation sites (9): 179, 285, 341, 477, 585, 643, 700, 731, 748

Function

Pathways and Gene Ontology

Reactome pathways

2 pathways

IDPathway
R-HSA-196843Vitamin B2 (riboflavin) metabolism
R-HSA-199220Vitamin B5 (pantothenate) metabolism

MSigDB gene sets: 702 (showing top): GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_NEGATIVE_REGULATION_OF_TRANSMEMBRANE_TRANSPORT, GOBP_CARBOHYDRATE_TRANSPORT, GOBP_REGULATION_OF_FAT_CELL_DIFFERENTIATION, GOBP_POLYSACCHARIDE_BIOSYNTHETIC_PROCESS, BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_DN, GOCC_VACUOLAR_MEMBRANE, GOBP_NEGATIVE_REGULATION_OF_FAT_CELL_DIFFERENTIATION, GOMF_NUCLEASE_ACTIVITY, GOBP_NEGATIVE_REGULATION_OF_CELL_GROWTH, GOZGIT_ESR1_TARGETS_DN, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_RESPONSE_TO_INSULIN_STIMULUS, GOBP_GROWTH, GOCC_CELL_SURFACE, GOBP_INORGANIC_ANION_TRANSPORT

GO Biological Process (26): generation of precursor metabolites and energy (GO:0006091), phosphate-containing compound metabolic process (GO:0006796), immune response (GO:0006955), nucleoside triphosphate catabolic process (GO:0009143), gene expression (GO:0010467), bone mineralization (GO:0030282), negative regulation of cell growth (GO:0030308), melanocyte differentiation (GO:0030318), regulation of bone mineralization (GO:0030500), negative regulation of bone mineralization (GO:0030502), inorganic diphosphate transport (GO:0030505), intracellular phosphate ion homeostasis (GO:0030643), cellular response to insulin stimulus (GO:0032869), response to ATP (GO:0033198), negative regulation of fat cell differentiation (GO:0045599), negative regulation of glycogen biosynthetic process (GO:0045719), ATP metabolic process (GO:0046034), negative regulation of D-glucose import across plasma membrane (GO:0046325), negative regulation of insulin receptor signaling pathway (GO:0046627), 3’-phosphoadenosine 5’-phosphosulfate metabolic process (GO:0050427), phosphate ion homeostasis (GO:0055062), nucleic acid metabolic process (GO:0090304), obsolete negative regulation of hh target transcription factor activity (GO:1990787), vesicle-mediated transport (GO:0016192), biomineral tissue development (GO:0031214), animal organ development (GO:0048513)

GO Molecular Function (22): nucleic acid binding (GO:0003676), 3’,5’-cyclic-AMP phosphodiesterase activity (GO:0004115), exonuclease activity (GO:0004527), phosphodiesterase I activity (GO:0004528), dinucleotide phosphatase activity (GO:0004551), scavenger receptor activity (GO:0005044), insulin receptor binding (GO:0005158), calcium ion binding (GO:0005509), ATP binding (GO:0005524), zinc ion binding (GO:0008270), phosphatase activity (GO:0016791), polysaccharide binding (GO:0030247), GTP diphosphatase activity (GO:0036219), UTP diphosphatase activity (GO:0036221), protein homodimerization activity (GO:0042803), nucleoside triphosphate diphosphatase activity (GO:0047429), ATP diphosphatase activity (GO:0047693), 3’-phosphoadenosine 5’-phosphosulfate binding (GO:0050656), cyclic-GMP-AMP hydrolase activity (GO:0106177), protein binding (GO:0005515), hydrolase activity (GO:0016787), metal ion binding (GO:0046872)

GO Cellular Component (7): obsolete extracellular space (GO:0005615), lysosomal membrane (GO:0005765), plasma membrane (GO:0005886), cell surface (GO:0009986), membrane (GO:0016020), basolateral plasma membrane (GO:0016323), extracellular region (GO:0005576)

Reactome top-level categories

Rollup of top-1 pathways:

CategoryPathways
Metabolism of water-soluble vitamins and cofactors2

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
nucleoside triphosphate diphosphatase activity3
cellular anatomical structure3
metabolic process2
bone mineralization2
purine ribonucleotide metabolic process2
binding2
pyrophosphatase activity2
adenyl ribonucleotide binding2
immune system process1
response to stimulus1
nucleoside triphosphate metabolic process1
nucleoside phosphate catabolic process1
macromolecule biosynthetic process1
ossification1
biomineral tissue development1
regulation of cell growth1
cell growth1
negative regulation of growth1
negative regulation of cellular process1
pigment cell differentiation1
regulation of ossification1
regulation of biomineral tissue development1
negative regulation of ossification1
regulation of bone mineralization1
negative regulation of biomineral tissue development1
inorganic anion transport1
phosphate ion homeostasis1
intracellular chemical homeostasis1
response to insulin1
cellular response to peptide hormone stimulus1
response to purine-containing compound1
response to organophosphorus1
response to oxygen-containing compound1
fat cell differentiation1
negative regulation of cell differentiation1
regulation of fat cell differentiation1
glycogen biosynthetic process1
regulation of glycogen biosynthetic process1
negative regulation of macromolecule biosynthetic process1
negative regulation of glycogen metabolic process1

Protein interactions and networks

STRING

1728 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
ENPP1PHEXP78562908
ENPP1NT5EP21589880
ENPP1ALPLP05186864
ENPP1FGF23Q9GZV9861
ENPP1GDPD1Q8N9F7828
ENPP1GDPD3Q7L5L3822
ENPP1PHOSPHO1Q8TCT1822
ENPP1SLC34A3Q8N130813
ENPP1ANKHQ9HCJ1796
ENPP1ABCC6P78420732
ENPP1CAPN10Q9HC96680
ENPP1AHSGP02765648
ENPP1IBSPP21815644
ENPP1CLCN5P51795640
ENPP1KLQ9UEF7631

IntAct

85 interactions, top by confidence:

ABTypeScore
EIF2B2SLC27A2psi-mi:“MI:0914”(association)0.640
ABCG2ENPP1psi-mi:“MI:0407”(direct interaction)0.600
ENPP1ABCG2psi-mi:“MI:0915”(physical association)0.600
ABCG2ENPP1psi-mi:“MI:0915”(physical association)0.600
CD81C2orf72psi-mi:“MI:0914”(association)0.530
FNTBBLTP3Bpsi-mi:“MI:0914”(association)0.530
FBXO2TMEM131Lpsi-mi:“MI:0914”(association)0.530
DEFA1MANBApsi-mi:“MI:0914”(association)0.530
LGALS1PODXLpsi-mi:“MI:0914”(association)0.530
GPC3CLGNpsi-mi:“MI:0914”(association)0.530
CLGNNPC1psi-mi:“MI:0914”(association)0.530
FANCEENPP1psi-mi:“MI:0914”(association)0.530
ARMC6SLC27A2psi-mi:“MI:0914”(association)0.530
LGALS1LAMA5psi-mi:“MI:0914”(association)0.530
FNTBCAPN1psi-mi:“MI:0914”(association)0.530
ANKHFAM234Bpsi-mi:“MI:0914”(association)0.530
FLVCR1TNFRSF10Bpsi-mi:“MI:0914”(association)0.530
ENPP1INSRpsi-mi:“MI:2364”(proximity)0.470
INSRENPP1psi-mi:“MI:0915”(physical association)0.470
Dlg4ENPP1psi-mi:“MI:0407”(direct interaction)0.440
psi-mi:“MI:0914”(association)0.350
ATP6V0D1psi-mi:“MI:0914”(association)0.350
PTCH1PLXNB2psi-mi:“MI:0914”(association)0.350
FANCEGNPATpsi-mi:“MI:0914”(association)0.350

BioGRID (98): ENPP1 (Affinity Capture-MS), ENPP1 (Affinity Capture-MS), ENPP1 (Affinity Capture-MS), ENPP1 (Affinity Capture-MS), ENPP1 (Affinity Capture-MS), PSMD12 (Affinity Capture-Western), PSMA1 (Affinity Capture-Western), PSMB1 (Affinity Capture-Western), ENPP1 (Biochemical Activity), ENPP1 (Affinity Capture-MS), ENPP1 (Affinity Capture-MS), ENPP1 (Affinity Capture-MS), ENPP1 (Affinity Capture-MS), ENPP1 (Affinity Capture-MS), ENPP1 (Affinity Capture-MS)

ESM2 similar proteins: A0A0D3QS98, A0A0D3QS99, A4D0V7, C5H5C4, F6Q1T7, O70309, O75354, P17405, P18084, P18424, P22413, P50747, P52850, P58242, P61642, P80747, Q04519, Q0VBD0, Q0VD19, Q13219, Q52KP5, Q58CQ9, Q5QQ51, Q5STE3, Q64687, Q6DFZ6, Q6KFX9, Q6MZW2, Q6P988, Q6UWX4, Q6YGZ1, Q6ZXD2, Q71RP1, Q812F8, Q8BJQ9, Q8C1F4, Q8C419, Q8N5D6, Q8N6G5, Q8R116

Diamond homologs: A0A2D0TC04, A1A4K5, A2VDP5, J3SBP3, J3SEZ3, O14638, O94323, P06802, P0DQQ4, P15396, P22413, P84039, P97675, Q0VA77, Q13822, Q3TIW9, Q566N0, Q5EZ72, Q5R5M5, Q5RAC0, Q64610, Q6AX80, Q6DYE8, Q6UWV6, Q8BTJ4, Q924C3, Q9EQG7, Q9R1E6, Q9UJA9, Q9Y6X5, W8E7D1, P90754, A1YYW7, B0BND0, F1N5C8, P90755, Q58D68, Q5BKW7, Q5RB45, Q6DDP3

SIGNOR signaling

9 interactions.

AEffectBMechanism
ENPP1“down-regulates activity”INSRbinding
FGF2“up-regulates quantity by expression”ENPP1“transcriptional regulation”
RUNX2“up-regulates quantity by expression”ENPP1“transcriptional regulation”
ENPP1up-regulatesBone_mineralization
HSPA1A“up-regulates quantity”ENPP1“post transcriptional regulation”
HSPA1B“up-regulates quantity”ENPP1“post transcriptional regulation”
IL1B“down-regulates quantity by repression”ENPP1“transcriptional regulation”
TGFB1“up-regulates quantity by expression”ENPP1“transcriptional regulation”
ENPP1“down-regulates quantity”“3’,5’-cyclic AMP”“chemical modification”

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 103 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Metal ion SLC transporters546.2×6e-06
R-HSA-425366616.7×1e-04
SLC-mediated transmembrane transport87.3×8e-04
Transport of small molecules114.3×2e-03

GO biological processes:

GO termPartnersFoldFDR
zinc ion transmembrane transport859.1×4e-10
intracellular zinc ion homeostasis630.4×9e-06
amino acid transport516.4×2e-03
transport across blood-brain barrier611.3×2e-03

Disease & clinical

Clinical variants and AI predictions

ClinVar

935 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic55
Likely pathogenic35
Uncertain significance423
Likely benign211
Benign130

Top pathogenic / likely-pathogenic (30)

Variant IDHGVSClassification
1179191NM_006208.3(ENPP1):c.2344C>T (p.Arg782Ter)Pathogenic
13585NM_006208.3(ENPP1):c.2677G>T (p.Glu893Ter)Pathogenic
13587NM_006208.3(ENPP1):c.1072_1082del (p.Gln358fs)Pathogenic
13592NM_006208.3(ENPP1):c.1112A>T (p.Tyr371Phe)Pathogenic
13593NM_006208.3(ENPP1):c.2444+702_*868delPathogenic
13594NM_006208.3(ENPP1):c.797G>T (p.Gly266Val)Pathogenic
13595NM_006208.3(ENPP1):c.2248dup (p.Ser750fs)Pathogenic
13596NM_006208.3(ENPP1):c.2702A>C (p.Tyr901Ser)Pathogenic
13597NM_006208.3(ENPP1):c.783C>G (p.Tyr261Ter)Pathogenic
13598NM_006208.3(ENPP1):c.878_879del (p.Lys293fs)Pathogenic
1526269NM_006208.3(ENPP1):c.1028C>A (p.Ser343Ter)Pathogenic
1699955NM_006208.3(ENPP1):c.915+1G>APathogenic
1699956NM_006208.3(ENPP1):c.2741T>A (p.Leu914Ter)Pathogenic
1699957NM_006208.3(ENPP1):c.511A>T (p.Lys171Ter)Pathogenic
1699959NM_006208.3(ENPP1):c.574del (p.Glu192fs)Pathogenic
1699961NM_006208.3:c.(1091+1_1092-1)_(1164+1_1165-1)delPathogenic
1699962NM_006208.3(ENPP1):c.1094del (p.Pro365fs)Pathogenic
1699963NM_006208.3(ENPP1):c.1273+1G>APathogenic
1699964NM_006208.3(ENPP1):c.196_197del (p.Ala66fs)Pathogenic
1699966NM_006208.3(ENPP1):c.2230C>T (p.Gln744Ter)Pathogenic
1699967NM_006208.3(ENPP1):c.26dup (p.Gly10fs)Pathogenic
1699971NM_006208.3(ENPP1):c.1273+2T>CPathogenic
1699972NM_006208.3(ENPP1):c.208A>T (p.Lys70Ter)Pathogenic
1699973NM_006208.3(ENPP1):c.2192del (p.Asn731fs)Pathogenic
1699974NM_006208.3(ENPP1):c.2300del (p.Gln767fs)Pathogenic
1699975NM_006208.3(ENPP1):c.2664del (p.Ile889fs)Pathogenic
1928268NM_006208.3(ENPP1):c.2429dup (p.Leu810fs)Pathogenic
2136472NM_006208.3(ENPP1):c.1412A>G (p.Tyr471Cys)Pathogenic
2136474NM_006208.3(ENPP1):c.2713_2717del (p.Lys905fs)Pathogenic
2584779NM_006208.3(ENPP1):c.2230+5G>APathogenic

SpliceAI

3637 predictions. Top by Δscore:

VariantEffectΔscore
6:131808272:GCTG:Gdonor_gain1.0000
6:131849988:A:AGacceptor_gain1.0000
6:131849988:AGTT:Aacceptor_loss1.0000
6:131849989:G:GCacceptor_gain1.0000
6:131849989:GT:Gacceptor_gain1.0000
6:131849989:GTT:Gacceptor_gain1.0000
6:131849989:GTTA:Gacceptor_gain1.0000
6:131849989:GTTAA:Gacceptor_gain1.0000
6:131850104:CAG:Cdonor_loss1.0000
6:131850105:AG:Adonor_loss1.0000
6:131850106:GGTA:Gdonor_loss1.0000
6:131850107:G:GAdonor_loss1.0000
6:131850108:T:Gdonor_loss1.0000
6:131860383:TTAG:Tacceptor_loss1.0000
6:131860384:TAG:Tacceptor_loss1.0000
6:131860385:A:AGacceptor_gain1.0000
6:131860385:A:Tacceptor_loss1.0000
6:131860385:AG:Aacceptor_gain1.0000
6:131860385:AGG:Aacceptor_gain1.0000
6:131860386:G:GGacceptor_gain1.0000
6:131860386:GG:Gacceptor_gain1.0000
6:131860386:GGG:Gacceptor_gain1.0000
6:131860386:GGGA:Gacceptor_gain1.0000
6:131860502:AACCA:Adonor_gain1.0000
6:131860503:ACCA:Adonor_gain1.0000
6:131860504:CCA:Cdonor_gain1.0000
6:131860504:CCAG:Cdonor_loss1.0000
6:131860505:CA:Cdonor_gain1.0000
6:131860505:CAGT:Cdonor_loss1.0000
6:131860506:AGTG:Adonor_loss1.0000

AlphaMissense

6133 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
6:131847804:T:AI90K0.999
6:131849998:T:AC108S0.998
6:131849999:G:AC108Y0.998
6:131849999:G:CC108S0.998
6:131850040:T:AC122S0.998
6:131850041:G:CC122S0.998
6:131850073:T:CC133R0.998
6:131847788:T:CC85R0.997
6:131847804:T:GI90R0.997
6:131847810:G:AG92D0.997
6:131849998:T:CC108R0.997
6:131850000:C:GC108W0.997
6:131850040:T:CC122R0.997
6:131850073:T:AC133S0.997
6:131850074:G:AC133Y0.997
6:131850074:G:CC133S0.997
6:131850075:T:GC133W0.997
6:131854961:A:TD218V0.997
6:131861643:T:AW322R0.997
6:131861643:T:CW322R0.997
6:131847798:C:AT88K0.996
6:131847809:G:CG92R0.996
6:131847816:T:AI94K0.996
6:131849999:G:TC108F0.996
6:131850041:G:AC122Y0.996
6:131850041:G:TC122F0.996
6:131850042:T:GC122W0.996
6:131850052:T:CC126R0.996
6:131850053:G:AC126Y0.996
6:131850054:T:GC126W0.996

dbSNP variants (sampled 300 via entrez): RS1000047589 (6:131855976 G>A), RS1000114145 (6:131858239 G>A), RS1000241254 (6:131864003 A>C,G), RS1000256451 (6:131816497 A>G), RS1000301135 (6:131876199 G>T), RS1000336343 (6:131826369 AGCT>A), RS1000420306 (6:131856268 T>C), RS1000424634 (6:131877238 C>T), RS1000455578 (6:131869904 G>A,T), RS1000465208 (6:131823106 G>C), RS1000585748 (6:131830408 C>T), RS1000628848 (6:131874770 T>C), RS1000684584 (6:131821421 T>C), RS1000738038 (6:131821130 A>G), RS1000759032 (6:131868624 T>G)

Disease associations

OMIM: gene MIM:173335 | disease phenotypes: MIM:208000, MIM:125853, MIM:613312, MIM:615522, MIM:601665, MIM:617284

GenCC curated gene-disease

DiseaseClassificationInheritance
arterial calcification, generalized, of infancy, 1DefinitiveAutosomal recessive
hypopigmentation-punctate palmoplantar keratoderma syndromeStrongAutosomal dominant
hypophosphatemic rickets, autosomal recessive, 2StrongAutosomal recessive
autosomal recessive hypophosphatemic ricketsSupportiveAutosomal recessive
arterial calcification of infancySupportiveAutosomal dominant
autosomal recessive inherited pseudoxanthoma elasticumSupportiveAutosomal recessive

ClinGen Gene-Disease Validity (2)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
arterial calcification, generalized, of infancy, 1DefinitiveAR
hypopigmentation-punctate palmoplantar keratoderma syndromeLimitedAD

Mondo (12): arterial calcification, generalized, of infancy, 1 (MONDO:0008817), type 2 diabetes mellitus (MONDO:0005148), obesity disorder (MONDO:0011122), hypophosphatemic rickets, autosomal recessive, 2 (MONDO:0013219), hypopigmentation-punctate palmoplantar keratoderma syndrome (MONDO:0014227), inherited obesity (MONDO:0019182), hypophosphatemic rickets (MONDO:0024300), intellectual disability (MONDO:0001071), dystonia 28, childhood-onset (MONDO:0015004), autosomal recessive hypophosphatemic rickets (MONDO:0017324), arterial calcification of infancy (MONDO:0018870), autosomal recessive inherited pseudoxanthoma elasticum (MONDO:0009925)

Orphanet (8): Generalized arterial calcification of infancy (Orphanet:51608), Autosomal recessive hypophosphatemic rickets (Orphanet:289176), Hypopigmentation-punctate palmoplantar keratoderma syndrome (Orphanet:324561), Obesity due to melanocortin 4 receptor deficiency (Orphanet:71529), Genetic obesity (Orphanet:77828), Dystonia 28 (Orphanet:589618), NON RARE IN EUROPE: Non rare obesity (Orphanet:521399), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)

HPO phenotypes

168 total (30 of 168 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000007Autosomal recessive inheritance
HP:0000117Renal phosphate wasting
HP:0000121Nephrocalcinosis
HP:0000164Abnormality of the dentition
HP:0000365Hearing impairment
HP:0000381Stapes ankylosis
HP:0000405Conductive hearing impairment
HP:0000407Sensorineural hearing impairment
HP:0000410Mixed hearing impairment
HP:0000474Thickened nuchal skin fold
HP:0000488Retinopathy
HP:0000505Visual impairment
HP:0000573Retinal hemorrhage
HP:0000592Blue sclerae
HP:0000630Abnormal retinal arterial/arteriolar morphology
HP:0000670Carious teeth
HP:0000684Delayed eruption of teeth
HP:0000685Hypoplasia of teeth
HP:0000737Irritability
HP:0000765Abnormal thorax morphology
HP:0000822Hypertension
HP:0000855Insulin resistance
HP:0000951Abnormality of the skin
HP:0000961Cyanosis
HP:0000962Hyperkeratosis
HP:0000969Edema
HP:0000974Hyperextensible skin
HP:0000978Bruising susceptibility
HP:0000982Palmoplantar keratoderma

GWAS associations

2 associations (top):

StudyTraitp-value
GCST001762_810Obesity-related traits3.000000e-06
GCST008163_207Height2.000000e-07

EFO canonical traits (1, from GWAS)

EFO IDTrait name
EFO:0004458C-reactive protein measurement

MeSH disease descriptors (6)

DescriptorNameTree numbers
D003924Diabetes Mellitus, Type 2C18.452.394.750.149; C19.246.300
D008607Intellectual DisabilityC10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539
D011561Pseudoxanthoma ElasticumC14.907.454.530; C15.378.463.515.530; C16.131.831.766; C16.320.850.750; C17.300.766; C17.800.804.766; C17.800.827.750
D063730Rickets, HypophosphatemicC05.116.198.816.875; C18.452.104.816.875; C18.452.174.845.875; C18.452.750.400.750; C18.654.521.500.133.770.734.875
C537440Arterial calcification of infancy (supp.)
C567647Hypophosphatemic Rickets, Autosomal Recessive, 2 (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL5925 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 36,848 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL265502SURAMIN336,848

PharmGKB: 1 entry (VIP=true, CPIC=false)

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: enzyme — Cyclic GMP-AMP turnover

Most potent curated ligand interactions (4 total), top 4:

LigandActionAffinityParameter
ISM5939Inhibition9.35pIC50
ENPP1 inhibitor 27Inhibition8.92pIC50
vizenpistatInhibition8.22pIC50
ENPP1 inhibitor 29fInhibition7.17pIC50

Binding affinities (BindingDB)

177 measured of 223 human assays (223 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
3,5-difluoro-4-[[7-methoxy-2-oxo-3-(2,2,2-trifluoroethyl)imidazo[4,5-c][1,8]naphthyridin-1-yl]methyl]benzenesulfonamideIC500.15 nMUS-20250115609: AROMATIC HETEROCYCLIC COMPOUNDS, PREPARATION METHOD THEREFOR AND USES THEREOF
3,5-difluoro-4-[(8-methoxy-2-oxo-4H-[1,3]oxazino[5,4-c][1,8]naphthyridin-1-yl)methyl]benzenesulfonamideIC500.15 nMUS-20250115609: AROMATIC HETEROCYCLIC COMPOUNDS, PREPARATION METHOD THEREFOR AND USES THEREOF
3,5-difluoro-4-[(9-fluoro-8-methoxy-2-oxo-3,4-dihydropyrimido[5,4-c]quinolin-1-yl)methyl]benzenesulfonamideIC500.15 nMUS-20250115609: AROMATIC HETEROCYCLIC COMPOUNDS, PREPARATION METHOD THEREFOR AND USES THEREOF
3,5-difluoro-4-[(8-methoxy-2-oxopyrido[3,2-c][1,8]naphthyridin-1-yl)methyl]benzenesulfonamideIC500.15 nMUS-20250115609: AROMATIC HETEROCYCLIC COMPOUNDS, PREPARATION METHOD THEREFOR AND USES THEREOF
3,5-difluoro-4-[(8-methoxy-2-oxo-4H-[1,3]oxazino[5,4-c]quinolin-1-yl)methyl]benzenesulfonamideIC500.15 nMUS-20250115609: AROMATIC HETEROCYCLIC COMPOUNDS, PREPARATION METHOD THEREFOR AND USES THEREOF
3,5-difluoro-4-[(9-fluoro-8-methoxy-2-oxo-3,4-dihydropyrazino[2,3-c][1,8]naphthyridin-1-yl)methyl]benzenesulfonamideIC500.15 nMUS-20250115609: AROMATIC HETEROCYCLIC COMPOUNDS, PREPARATION METHOD THEREFOR AND USES THEREOF
3,5-difluoro-4-[[8-methoxy-2-oxo-3-(2,2,2-trifluoroethyl)-4H-pyrimido[5,4-c][1,8]naphthyridin-1-yl]methyl]benzenesulfonamideIC500.15 nMUS-20250115609: AROMATIC HETEROCYCLIC COMPOUNDS, PREPARATION METHOD THEREFOR AND USES THEREOF
6-[(8-methoxy-2-oxo-4H-[1,3]oxazino[5,4-c][1,8]naphthyridin-1-yl)methyl]pyridine-3-sulfonamideIC500.15 nMUS-20250115609: AROMATIC HETEROCYCLIC COMPOUNDS, PREPARATION METHOD THEREFOR AND USES THEREOF
3-fluoro-4-[(8-methoxy-2-oxo-4H-[1,3]oxazino[5,4-c][1,8]naphthyridin-1-yl)methyl]benzenesulfonamideIC500.15 nMUS-20250115609: AROMATIC HETEROCYCLIC COMPOUNDS, PREPARATION METHOD THEREFOR AND USES THEREOF
4-[(3-cyclopropyl-8-methoxy-2-oxo-4H-pyrimido[5,4-c][1,8]naphthyridin-1-yl)methyl]-3,5-difluorobenzenesulfonamideIC500.15 nMUS-20250115609: AROMATIC HETEROCYCLIC COMPOUNDS, PREPARATION METHOD THEREFOR AND USES THEREOF
3,5-difluoro-4-[(8-methoxy-2,3-dioxo-4H-pyrazino[2,3-c][1,5]naphthyridin-1-yl)methyl]benzenesulfonamideIC500.15 nMUS-20250115609: AROMATIC HETEROCYCLIC COMPOUNDS, PREPARATION METHOD THEREFOR AND USES THEREOF
3,4,5-trimethoxy-N-(1-methylbenzimidazol-5-yl)benzamideEC500.316 nMUS-20260001886: ENPP1 INHIBITORS I
3,5-difluoro-4-[[6-methoxy-3-methyl-7-(1-methylpyrazol-3-yl)pyrrolo[3,2-c]pyridin-1-yl]methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(6-methoxy-7-phenylpyrrolo[3,2-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(6-methoxy-3-methyl-7-phenylpyrrolo[3,2-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(3,6-dimethyl-7-phenylpyrrolo[3,2-c]pyridin-1-yl)methyl]-3,5-difluorobenzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(6-methyl-7-phenylpyrrolo[3,2-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(3,6-dimethyl-7-phenylpyrrolo[3,2-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(6-methoxy-3-methyl-2-oxo-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(3,6-dimethyl-2-oxo-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(6-methoxy-2-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(6-methoxy-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
3,5-difluoro-4-[(6-methoxy-2-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
3-fluoro-4-[(6-methoxy-2-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(2,6-dimethyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]-3,5-difluorobenzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
3,5-difluoro-4-[(6-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(6-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(4-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(2,6-dimethyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(2,4-dimethyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[[6-(difluoromethoxy)-2-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl]methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
3,5-difluoro-4-[[6-methyl-7-phenyl-2-(trifluoromethyl)imidazo[4,5-c]pyridin-1-yl]methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
2-fluoro-4-[(6-methoxy-2-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
[4-[(2,6-dimethyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]phenyl] sulfamateIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[[2-(difluoromethyl)-6-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl]methyl]-3,5-difluorobenzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(2-cyclopropyl-6-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]-3,5-difluorobenzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(2-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(4-cyano-2-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
3,5-difluoro-4-[[6-methyl-7-phenyl-2-(trideuteriomethyl)imidazo[4,5-c]pyridin-1-yl]methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
3,5-difluoro-4-[(2-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
3,5-difluoro-4-[[7-(2-fluorophenyl)-2,6-dimethylimidazo[4,5-c]pyridin-1-yl]methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
3,5-difluoro-4-[[7-(3-fluorophenyl)-2,6-dimethylimidazo[4,5-c]pyridin-1-yl]methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
3,5-difluoro-4-[[7-(4-fluorophenyl)-2,6-dimethylimidazo[4,5-c]pyridin-1-yl]methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
3,5-difluoro-4-[[2-(fluoromethyl)-6-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl]methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(6-ethyl-2-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]-3,5-difluorobenzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[[2-[(dimethylamino)methyl]-6-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl]methyl]-3,5-difluorobenzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
3,5-difluoro-4-[[6-methyl-7-phenyl-2-(2,2,2-trifluoroethyl)imidazo[4,5-c]pyridin-1-yl]methyl]benzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[[2-(cyclopropylmethyl)-6-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl]methyl]-3,5-difluorobenzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
4-[(7-cyclopropyl-2,6-dimethylimidazo[4,5-c]pyridin-1-yl)methyl]-3,5-difluorobenzenesulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF
6-[(2-cyclopropyl-6-methyl-7-phenylimidazo[4,5-c]pyridin-1-yl)methyl]pyridine-3-sulfonamideIC500.5 nMUS-20250101019: ECTONUCLEOTIDE PYROPHOSPHATASE-PHOSPHODIESTERASE 1 (ENPP1) INHIBITORS AND USES THEREOF

ChEMBL bioactivities

574 potent at pChembl≥5 of 661 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
10.05IC500.09nMCHEMBL5566114
10.00IC500.1nMCHEMBL5566114
9.80IC500.16nMCHEMBL5556000
9.70IC500.2nMCHEMBL6174154
9.66IC500.22nMCHEMBL5826130
9.52IC500.3nMCHEMBL5560511
9.32IC500.48nMCHEMBL5561670
9.30IC500.5nMCHEMBL5915707
9.30IC500.5nMCHEMBL5560556
9.28IC500.52nMCHEMBL5555976
9.25IC500.56nMCHEMBL5566818
9.20IC500.63nMCHEMBL6149286
9.18IC500.66nMCHEMBL5558246
9.14IC500.72nMCHEMBL5558533
9.10IC500.8nMCHEMBL5556506
9.06IC500.87nMCHEMBL5826130
9.03IC500.94nMCHEMBL5567749
9.03IC500.94nMCHEMBL5777245
9.01IC500.97nMCHEMBL6169586
9.00IC501nMCHEMBL6145273
8.97IC501.07nMCHEMBL6175795
8.96IC501.1nMCHEMBL6172085
8.96IC501.1nMCHEMBL6151998
8.92IC501.21nMCHEMBL5818525
8.92IC501.2nMCHEMBL6164492
8.92IC501.2nMCHEMBL6171102
8.91IC501.23nMCHEMBL6160451
8.85IC501.41nMCHEMBL5527873
8.85IC501.4nMCHEMBL6173019
8.82IC501.5nMCHEMBL6160796
8.81IC501.53nMCHEMBL6163224
8.77IC501.7nMCHEMBL5557547
8.75IC501.77nMCHEMBL5556761
8.75IC501.79nMCHEMBL5816478
8.74IC501.8nMCHEMBL6160465
8.74IC501.8nMCHEMBL6164747
8.74IC501.8nMCHEMBL6171252
8.73IC501.84nMCHEMBL6150796
8.72IC501.9nMCHEMBL5557547
8.68IC502.1nMCHEMBL5555976
8.68IC502.1nMCHEMBL6162440
8.67IC502.14nMCHEMBL5568520
8.66IC502.2nMCHEMBL6147702
8.66IC502.2nMCHEMBL6172306
8.66IC502.2nMCHEMBL6159611
8.62IC502.4nMCHEMBL5563471
8.60IC502.5nMCHEMBL6173950
8.57IC502.7nMCHEMBL6160626
8.54IC502.88nMCHEMBL6146109
8.51IC503.06nMCHEMBL5859913

PubChem BioAssay actives

383 with measured affinity, of 963 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
2-[(1S,5R)-3-(7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)-3-azabicyclo[3.1.0]hexan-6-yl]ethylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0001uM
2-[4-methyl-1-(7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)piperidin-4-yl]ethylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0002uM
2-[1-(7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)piperidin-4-yl]ethylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0003uM
6-[(7,8-dimethoxy-2,4-dimethylimidazo[4,5-c]quinolin-1-yl)methyl]pyridine-3-sulfonamide2074403: Inhibition of human ENPP1 using TMP-pNP as substrate at pH 9.5 preincubated for 30 mins followed by substrate addition and measured after 60 mins by absorbance based assayic500.0005uM
2-[1-(7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)pyrrolidin-3-yl]ethylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0005uM
[1-(7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)azepan-4-yl]methylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0006uM
2-[4-fluoro-1-(7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)piperidin-4-yl]ethylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0007uM
2-[4-hydroxy-1-(7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)piperidin-4-yl]ethylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0007uM
2-[1-(6,7-dimethoxyquinazolin-4-yl)piperidin-4-yl]ethylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0008uM
2-[4-methoxy-1-(7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)piperidin-4-yl]ethylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0009uM
5-fluoro-6-[[6-methoxy-7-phenyl-2-(trifluoromethyl)imidazo[4,5-c]pyridin-1-yl]methyl]pyridine-3-sulfonamide2074409: Inhibition of ENNP1 (unknown origin) using 2’,3’-cGAMP as substrate preincubated with compound followed by substrate addition and measured after 60 mins by AMP-Glo reagent based assayic500.0010uM
[1-(7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)piperidin-4-yl]methylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0014uM
N-hydroxy-2-[4-[(7-methoxy-1,8-naphthyridin-4-yl)oxy]phenyl]acetamide2074396: Inhibition of ECD-his tagged human ENPP1 using 2’,3’-cGAMP as substrate preincubated for 15 mins followed by substrate addition and measured after 60 mins by AMP-Glo assayic500.0017uM
4-[(7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)amino]butylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0018uM
2-[1-(8-methoxyquinazolin-4-yl)piperidin-4-yl]ethylphosphonic acid2074388: Inhibition of ENPP1 (unknown origin) using cGAMP as substrate assessed as inhibition constant at pH 7.4ki0.0020uM
2-[1-(3-cyano-8-methoxyquinolin-4-yl)piperidin-4-yl]ethylphosphonic acid2074388: Inhibition of ENPP1 (unknown origin) using cGAMP as substrate assessed as inhibition constant at pH 7.4ki0.0020uM
[4-[(7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)amino]cyclohexyl]methylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0021uM
2-[1-(6-chloro-7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)piperidin-4-yl]ethylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0024uM
3-methyl-5-[4-methyl-4-[(sulfamoylamino)methyl]piperidin-1-yl]-2-oxo-1,4-dihydropyrimido[4,5-d]pyrimidine;hydrochloride1934341: Inhibition of ENPP1 (unknown origin)ic500.0037uM
3-[1-(2-oxo-1H-quinolin-5-yl)piperidin-4-yl]propylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0040uM
2-[1-(7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)-4-(trifluoromethyl)piperidin-4-yl]ethylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0040uM
2-(1H-benzimidazol-2-ylmethyl)-N-[(E)-1-(2-chlorophenyl)ethylideneamino]-4-hydroxy-1,1-dioxo-1lambda6,2-benzothiazine-3-carboxamide2074620: Inhibition of ENPP1 (unknown origin)ic500.0042uM
2-[(6-amino-7H-purin-8-yl)sulfanyl]-N-(3,4-dimethoxyphenyl)acetamide1170611: Inhibition of human NPP1 using p-Nph-5’-TMP as substrateki0.0050uM
8-(2-fluoro-6-methoxyphenyl)-N-[5-fluoro-2-[4-(sulfamoylamino)piperidin-1-yl]phenyl]imidazo[1,2-a]pyrazine-6-carboxamide2131186: Inhibition of C-terminal flag-tagged recombinant human ENPP1 (110 to 926 residues) extracted from HEK293F cells using p-Nph-5’-TMP as substrate by absorbance based assayic500.0057uM
2-[1-(8-methyl-7-oxopyrido[2,3-d]pyrimidin-4-yl)piperidin-4-yl]ethylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0062uM
2-[1-(7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)azetidin-3-yl]ethylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0062uM
2-[4-(7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)piperazin-1-yl]ethylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0085uM
[4-[(5-carbamoylimidazo[4,5-b]pyridin-1-yl)methyl]phenyl]boronic acid2074408: Inhibition of ENPP1 (unknown origin) using TMP-pNP as substrate preincubated for 10 mins followed by substrate addition and measured immediately under pH 8.8 by absorbance based multimode plate reader analysisic500.0100uM
[1-[[(2S)-2-amino-3,3-dimethylbutanoyl]amino]-3-[1-(8-methoxyquinazolin-4-yl)piperidin-4-yl]propan-2-yl]phosphonic acid2074388: Inhibition of ENPP1 (unknown origin) using cGAMP as substrate assessed as inhibition constant at pH 7.4ki0.0100uM
7-methoxy-4-[4-[(sulfamoylamino)methyl]phenyl]quinoline2021553: Inhibition of recombinant human ENPP1 using cGAMP as substrate assessed as inhibition of cGAMP hydrolysis preincubated for 5 to 10 mins followed by substrate addition and measured after 90 mins by AMP-Glo reagent based luminescence plate reader analysisic500.0110uM
6,7-dimethoxy-4-[4-[2-(sulfamoylamino)ethyl]piperidin-1-yl]quinazoline2074391: Inhibition of ENPP1 (unknown origin) using cGAMP as substrate assessed as inhibition constant at pH 9ki0.0110uM
2-[1-(6-methoxy-7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)piperidin-4-yl]ethylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0126uM
4-[[4-formyl-5,6-dimethyl-3-(phosphonooxymethyl)-2-pyridinyl]diazenyl]benzene-1,3-disulfonic acid2074620: Inhibition of ENPP1 (unknown origin)ic500.0150uM
[7-(7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)-7-azaspiro[3.5]nonan-2-yl]methylphosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0189uM
N-(3,4-dimethoxyphenyl)-2-[(6-oxo-1,7-dihydropurin-8-yl)sulfanyl]acetamide1170611: Inhibition of human NPP1 using p-Nph-5’-TMP as substrateki0.0200uM
[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-[[dihydroxyphosphinothioyloxy(hydroxy)phosphoryl]methyl]phosphinic acid1153903: Mixed type inhibition of human NPP1 using pNP-TMP as substrate after 20 mins by Dixon and Cornish-Bowden methodki0.0200uM
4-[4-methyl-4-[(sulfamoylamino)methyl]piperidin-1-yl]-7H-pyrrolo[2,3-d]pyrimidine2074395: Inhibition of recombinant human ENPP1 using 2’,3’-cGAMP as substrate preincubated for 5 to 10 mins followed by substrate addition and measured after 90 mins by ADP-Glo assayic500.0250uM
(2R)-3-(3,4-dihydroxyphenyl)-2-[(E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxypropanoic acid2074621: Binding affinity to human ENPP1 assessed as inhibition constantki0.0269uM
[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-sulfanylphosphinothioyl] [[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-sulfanylphosphinothioyl]oxy-hydroxyphosphoryl] hydrogen phosphate1369990: Inhibition of human NPP1 using pNP-TMP as substrate preincubated for 3 mins followed by substrate addition measured after 15 minski0.0270uM
8-(2-fluoro-6-methoxyphenyl)-N-[5-fluoro-2-[4-(sulfamoylamino)piperidin-1-yl]phenyl]-2-methylimidazo[1,2-a]pyrazine-6-carboxamide2131186: Inhibition of C-terminal flag-tagged recombinant human ENPP1 (110 to 926 residues) extracted from HEK293F cells using p-Nph-5’-TMP as substrate by absorbance based assayic500.0271uM
N-(3,4-dimethoxyphenyl)-2-[(5-methoxy-1H-imidazo[4,5-b]pyridin-2-yl)sulfanyl]acetamide1170611: Inhibition of human NPP1 using p-Nph-5’-TMP as substrateki0.0296uM
5-[3-fluoro-4-[(sulfamoylamino)methyl]phenyl]-3-methyl-2-oxo-1,4-dihydropyrido[2,3-d]pyrimidine;hydrochloride1934341: Inhibition of ENPP1 (unknown origin)ic500.0323uM
[4-[[(7-oxo-8H-pyrido[2,3-d]pyrimidin-4-yl)amino]methyl]phenyl]phosphonic acid2080851: Inhibition of human recombinant ENPP1 expressed in HEK293T cells using cGAMP as substrate at pH 7.5 measured after 3.5 hrs in presence of ATP by luminescence based AMP-glo assayic500.0340uM
N-(3,4-dimethoxyphenyl)-2-[(2,6-dioxo-3,7-dihydropurin-8-yl)sulfanyl]acetamide1170611: Inhibition of human NPP1 using p-Nph-5’-TMP as substrateki0.0358uM
8-(2,6-difluorophenyl)-N-[5-fluoro-2-[4-(sulfamoylamino)piperidin-1-yl]phenyl]imidazo[1,2-a]pyrazine-6-carboxamide2131186: Inhibition of C-terminal flag-tagged recombinant human ENPP1 (110 to 926 residues) extracted from HEK293F cells using p-Nph-5’-TMP as substrate by absorbance based assayic500.0359uM
6,7-dimethoxy-1-oxo-4-[4-[(sulfamoylamino)methyl]phenyl]-2H-phthalazine2021553: Inhibition of recombinant human ENPP1 using cGAMP as substrate assessed as inhibition of cGAMP hydrolysis preincubated for 5 to 10 mins followed by substrate addition and measured after 90 mins by AMP-Glo reagent based luminescence plate reader analysisic500.0370uM
2-[(2-amino-7H-purin-6-yl)sulfanyl]-N-(4-hydroxy-3-methoxyphenyl)acetamide2074415: Inhibition of ENPP1 (unknown origin) assessed as inhibition constantki0.0380uM
1-oxo-4-[[4-(sulfamoylamino)phenyl]methyl]-2H-phthalazine2021553: Inhibition of recombinant human ENPP1 using cGAMP as substrate assessed as inhibition of cGAMP hydrolysis preincubated for 5 to 10 mins followed by substrate addition and measured after 90 mins by AMP-Glo reagent based luminescence plate reader analysisic500.0390uM
2-[(2-amino-7H-purin-6-yl)sulfanyl]-N-(4-hydroxy-3-methoxyphenyl)butanamide2074415: Inhibition of ENPP1 (unknown origin) assessed as inhibition constantki0.0410uM
N-(3,4-dimethoxyphenyl)-2-(3H-imidazo[4,5-c]pyridin-2-ylsulfanyl)acetamide1170611: Inhibition of human NPP1 using p-Nph-5’-TMP as substrateki0.0442uM

CTD chemical–gene interactions

62 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidaffects cotreatment, increases expression, affects expression5
bisphenol Aaffects cotreatment, increases expression, affects expression, decreases expression4
Benzo(a)pyrenedecreases expression, increases expression, increases methylation, affects methylation4
Cyclosporinedecreases expression, increases expression3
sodium arsenitedecreases expression, increases abundance, increases expression, affects cotreatment2
Manganeseincreases expression, affects cotreatment, decreases expression, increases abundance2
Tetrachlorodibenzodioxindecreases expression2
Aflatoxin B1decreases expression, decreases methylation2
aristolochic acid Idecreases expression1
bisphenol Faffects cotreatment, increases expression1
sotorasibaffects cotreatment, increases expression1
2,4,6-tribromophenolincreases expression1
testosterone enanthateaffects expression1
methylmercuric chloridedecreases expression1
decabromobiphenyl etherincreases expression1
trichostatin Adecreases expression1
tris(1,3-dichloro-2-propyl)phosphateincreases expression1
butyraldehydedecreases expression1
tetrabromobisphenol Aincreases expression1
manganese chlorideaffects cotreatment, decreases expression, increases abundance1
nickel sulfateincreases expression1
beta-glycerophosphoric acidincreases activity, increases expression, decreases reaction1
2-palmitoylglycerolincreases expression1
K 7174increases expression1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, increases expression1
2,2’,4,4’-tetrabromodiphenyl etherincreases expression1
dorsomorphinincreases expression, affects cotreatment1
pentabrominated diphenyl ether 100increases expression1
hexabrominated diphenyl ether 153increases expression1
incobotulinumtoxinAdecreases expression1

ChEMBL screening assays

167 unique, capped per target: 154 binding, 13 admet

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1004221BindingActivity of human NPP1 expressed in human 293T cells assessed as drug hydrolysis at 100 uM after 20 mins by reverse-phase HPLC relative to p-nitrophenyl-thymidine-5-monophosphateIdentification of hydrolytically stable and selective P2Y(1) receptor agonists. — Eur J Med Chem
CHEMBL2090463ADMETHydrolytic stability of the compound assessed as human NPP1-mediated hydrolysis measuring UMP formation after 2 hrs by HPLC analysisUDP made a highly promising stable, potent, and selective P2Y6-receptor agonist upon introduction of a boranophosphate moiety. — Bioorg Med Chem

Cellosaurus cell lines

7 cell lines: 4 transformed cell line, 2 finite cell line, 1 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_D9EAUbigene HEK293 ENPP1 KOTransformed cell lineFemale
CVCL_E1W1HAP1 ENPP1 (-)Cancer cell lineMale
CVCL_EG72GM10439Finite cell lineFemale
CVCL_EG73GM10440Transformed cell lineFemale
CVCL_EJ63GM14556Transformed cell lineMale
CVCL_FA40GM14553Finite cell lineFemale
CVCL_FA41GM14554Transformed cell lineFemale

Clinical trials (associated diseases)

332 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00006163PHASE4COMPLETEDComputer-assisted Diabetes Self-management Interventions
NCT00036504PHASE4COMPLETEDEfficacy and Safety of Twice-Daily Insulin Lispro Low Mixture Compared to a Once-Daily Long Acting Insulin Comparator in Patients Who Have Been Using One or More Oral Antihyperglycemic Agents Without Insulin
NCT00044460PHASE4COMPLETEDEfficacy and Safety In Poorly Controlled Type 2 Diabetics
NCT00095446PHASE4COMPLETEDNovoLog Observation Trial in Subjects With Type 1 and Type 2 Diabetes
NCT00101751PHASE4COMPLETEDINITIATE Plus (INITiation of Insulin to Reach A1c TargEt) Study
NCT00110370PHASE4COMPLETEDComparing Pre-Mixed Insulin With Insulin Glargine Combined With Rapid-Acting Insulin in Patients With Type 2 Diabetes
NCT00110448PHASE4COMPLETEDJapanese Primary Prevention of Atherosclerosis With Aspirin for Diabetes (JPAD) Trial
NCT00118950PHASE4COMPLETEDEffect of Metformin Versus Repaglinide Treatment in Non-Obese Type 2 Diabetic Patients Uncontrolled by Diet
NCT00118963PHASE4COMPLETEDEffect of Repaglinide Versus Metformin Treatment in Non-Obese Patients With Type-2-Diabetes
NCT00121966PHASE4COMPLETEDSouth Danish Diabetes Study: Evaluation of the Antidiabetic Treatment of Type 2 Diabetes Mellitus
NCT00123604PHASE4COMPLETEDVascular Effects of Carvedilol Versus Metoprolol in Hypertensive Patients With Type 2 Diabetes
NCT00123643PHASE4COMPLETEDVascular Effects of Rosiglitazone Versus Glyburide in Type 2 Diabetic Patients
NCT00124397PHASE4COMPLETEDAtorvastatin and Endothelial Function in Type 2 Diabetes Mellitus (ATTEND-Study)
NCT00129233PHASE4COMPLETEDComparison of Valsartan With Amlodipine in Hypertensive Patients With Glucose Intolerance
NCT00133718PHASE4COMPLETEDA 2 Year Trial of Patients With Type 2 Diabetes Focusing on Cardiovascular Diagnostics and Metabolic Control
NCT00135070PHASE4TERMINATEDHospital In-Patient Insulin Study
NCT00141232PHASE4COMPLETEDEvaluating Atorvastatin With Omega-3 Fatty Acids in Cardiovascular Risk Reduction in Patients With Type 2 Diabetes
NCT00144144PHASE4UNKNOWNA Study on Ca Blocker Versus AII Antagonists in Hypertension With Type 2 Diabetes
NCT00149331PHASE4COMPLETEDThe Effects of Two Education Strategies About Insulin on Patient Preferences and Perceptions About Insulin Therapy
NCT00162357PHASE4COMPLETEDPost-PCI:Cardiac Imaging in Patients With Diabetes to Detect Coronary Artery Blockages Previously Opened by Angioplasty
NCT00174681PHASE4COMPLETEDTulip Study: Testing the Usefulness of Lantus When Initiated Prematurely In Patients With Type 2 Diabetes
NCT00174824PHASE4COMPLETEDComparison of Insulin Glargine and NPH Human Insulin in Progression of Diabetic Retinopathy in Type 2 Diabetic Patients
NCT00177398PHASE4COMPLETEDEffect of Glargine Insulin on Glucose Control in Hospitalized Patients Who Receive Tube Feedings
NCT00179400PHASE4COMPLETEDThe Role of Acute Combined PPAR Alpha and Gamma Stimulation on Insulin Action in Humans
NCT00184561PHASE4COMPLETEDEffectiveness and Safety of Biphasic Insulin Aspart 70/30 in Subjects With Type 2 Diabetes
NCT00184626PHASE4COMPLETEDComparison of Insulin Glargine Versus Biphasic Insulin Aspart 30/70 or Biphasic Insulin Aspart 30/70 in Combination With Metformin in Subjects With Type 2 Diabetes.
NCT00191178PHASE4COMPLETEDEffects of Insulin in Perceived Mood Symptoms in Patients With Type 2 Diabetes
NCT00191282PHASE4COMPLETEDHyperglycemia and Cardiovascular Outcomes With Type 2 Diabetes
NCT00191464PHASE4COMPLETEDLong-Term Effects of Insulin Plus Metformin Regimens on the Overall and Postprandial Glycemic Control of Patients With Type 2 Diabetes
NCT00192803PHASE4UNKNOWNNon-Insulin Dependent Diabetes Mellitus (NIDDM) and Angiotensin Converting Enzyme 2 (ACE2): Diabetic Patients Treated With Antihypertensive Drugs
NCT00202033PHASE4COMPLETEDImpact of Self-Monitoring Blood Glucose Frequency on Glycemic Control in Patients With Type 2 Diabetes
NCT00205660PHASE4COMPLETEDChanges in Adiposity, Metabolic Measures From Atypicals to Aripiprazole
NCT00212290PHASE4COMPLETEDInsulin Resistance and Central Nervous System (CNS) Function in Type 2 Diabetes
NCT00212303PHASE4COMPLETEDExercise Training in Type 2 Diabetes and Hypertension
NCT00225342PHASE4WITHDRAWNStudy Protocol for Rosiglitazone Versus Gliclazide in Diabetics With Angina
NCT00238472PHASE4COMPLETEDA Pilot Study to Evaluate the Effects of Nateglinide vs. Glibenclamide on Renal Hemodynamics and Albumin Excretion
NCT00239538PHASE4COMPLETEDSMOOTH - Blood Pressure Control in Diabetic/Obese Patients
NCT00240253PHASE4COMPLETEDA Study Evaluating the Efficacy and Safety of Adding Symlin® to Lantus® (Insulin Glargine) in Subjects With Type 2 Diabetes
NCT00240422PHASE4COMPLETEDTrial to Compare the Effects of Either Telmisartan (40-80 mg PO Once Daily) or Ramipril (5-10 mg PO Once Daily) on Renal Endothelial Dysfunction in Hypertensive Patients With Type 2 Diabetes
NCT00241085PHASE4COMPLETEDEffect of Valsartan on Proteinuria in Patients With Hypertension and Diabetes Mellitus