EPB41
gene geneOn this page
Also known as 4.1R
Summary
EPB41 (erythrocyte membrane protein band 4.1, HGNC:3377) is a protein-coding gene on chromosome 1p35.3, encoding Protein 4.1 (P11171). Protein 4.1 is a major structural element of the erythrocyte membrane skeleton.
The protein encoded by this gene, together with spectrin and actin, constitute the red cell membrane cytoskeletal network. This complex plays a critical role in erythrocyte shape and deformability. Mutations in this gene are associated with type 1 elliptocytosis (EL1). Alternatively spliced transcript variants encoding different isoforms have been described for this gene.
Source: NCBI Gene 2035 — RefSeq curated summary.
At a glance
- Gene–disease (curated): elliptocytosis 1 (Definitive, GenCC) — +1 more curated relationship
- GWAS associations: 15
- Clinical variants (ClinVar): 303 total — 17 pathogenic, 17 likely-pathogenic
- Phenotypes (HPO): 26
- Druggable target: yes
- MANE Select transcript:
NM_001376013
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3377 |
| Approved symbol | EPB41 |
| Name | erythrocyte membrane protein band 4.1 |
| Location | 1p35.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | 4.1R |
| Ensembl gene | ENSG00000159023 |
| Ensembl biotype | protein_coding |
| OMIM | 130500 |
| Entrez | 2035 |
Gene structure
Transcript identifiers
Ensembl transcripts: 88 — 72 protein_coding, 6 retained_intron, 6 protein_coding_CDS_not_defined, 4 nonsense_mediated_decay
ENST00000343067, ENST00000347529, ENST00000349460, ENST00000373797, ENST00000373798, ENST00000373800, ENST00000460378, ENST00000462032, ENST00000482464, ENST00000488277, ENST00000490308, ENST00000636666, ENST00000642643, ENST00000642937, ENST00000643155, ENST00000643173, ENST00000643302, ENST00000643604, ENST00000644342, ENST00000644470, ENST00000644600, ENST00000644780, ENST00000644848, ENST00000645111, ENST00000645184, ENST00000645999, ENST00000646189, ENST00000646260, ENST00000646800, ENST00000646871, ENST00000647103, ENST00000647918, ENST00000648181, ENST00000648891, ENST00000649674, ENST00000649717, ENST00000649992, ENST00000650132, ENST00000650265, ENST00000706361, ENST00000870250, ENST00000870251, ENST00000870252, ENST00000870253, ENST00000870254, ENST00000870255, ENST00000870256, ENST00000921693, ENST00000921694, ENST00000921695, ENST00000921696, ENST00000921697, ENST00000921698, ENST00000921699, ENST00000921700, ENST00000921701, ENST00000921702, ENST00000921703, ENST00000921704, ENST00000921705, ENST00000921706, ENST00000921707, ENST00000921708, ENST00000921709, ENST00000921710, ENST00000921711, ENST00000921712, ENST00000921713, ENST00000921714, ENST00000921715, ENST00000921716, ENST00000921717, ENST00000921718, ENST00000921719, ENST00000921720, ENST00000921721, ENST00000921722, ENST00000921723, ENST00000921724, ENST00000921725, ENST00000921726, ENST00000921727, ENST00000921728, ENST00000921729, ENST00000921730, ENST00000921731, ENST00000921732, ENST00000921733
RefSeq mRNA: 22 — MANE Select: NM_001376013
NM_001166005, NM_001166006, NM_001166007, NM_001376013, NM_001376014, NM_001376015, NM_001376016, NM_001376017, NM_001376018, NM_001376019, NM_001376020, NM_001376021, NM_001376022, NM_001376023, NM_001376024, NM_001376025, NM_001376026, NM_001376027, NM_001376028, NM_004437, NM_203342, NM_203343
CCDS: CCDS330, CCDS331, CCDS53288, CCDS53289, CCDS85947, CCDS90897, CCDS90898, CCDS90899, CCDS90900, CCDS90901, CCDS90902
Canonical transcript exons
ENST00000343067 — 21 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001065024 | 29035826 | 29035923 |
| ENSE00001065025 | 29033093 | 29033245 |
| ENSE00001065026 | 28997215 | 28997319 |
| ENSE00001065027 | 29018224 | 29018442 |
| ENSE00001065029 | 29060422 | 29060484 |
| ENSE00001065030 | 29015692 | 29015767 |
| ENSE00001065031 | 29053104 | 29053312 |
| ENSE00001065032 | 29011865 | 29011907 |
| ENSE00001065035 | 29039254 | 29039426 |
| ENSE00001065038 | 29058811 | 29058852 |
| ENSE00001065039 | 29058589 | 29058645 |
| ENSE00001065043 | 29030400 | 29030487 |
| ENSE00003461752 | 29064982 | 29065158 |
| ENSE00003487555 | 29097807 | 29097935 |
| ENSE00003493439 | 29112368 | 29112448 |
| ENSE00003507583 | 28993330 | 28993542 |
| ENSE00003509531 | 29109336 | 29109437 |
| ENSE00003538414 | 29115699 | 29115803 |
| ENSE00003686609 | 28987431 | 28987905 |
| ENSE00003823103 | 28914569 | 28914768 |
| ENSE00003825110 | 29116819 | 29120041 |
Expression profiles
Bgee: expression breadth ubiquitous, 261 present calls, max score 99.17.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 39.5928 / max 2597.6035, expressed in 1716 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 1843 | 23.9157 | 1622 |
| 1845 | 7.0381 | 876 |
| 1847 | 5.1241 | 700 |
| 1844 | 1.9748 | 356 |
| 1846 | 0.5189 | 250 |
| 1849 | 0.4395 | 208 |
| 1848 | 0.3206 | 167 |
| 1852 | 0.2612 | 78 |
Top tissues by expression
286 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| trabecular bone tissue | UBERON:0002483 | 99.17 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 97.79 | gold quality |
| cerebellar cortex | UBERON:0002129 | 97.75 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 97.26 | gold quality |
| colonic epithelium | UBERON:0000397 | 96.36 | gold quality |
| cerebellum | UBERON:0002037 | 96.06 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 94.98 | gold quality |
| tonsil | UBERON:0002372 | 94.78 | gold quality |
| blood | UBERON:0000178 | 94.77 | gold quality |
| amniotic fluid | UBERON:0000173 | 94.06 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 93.82 | gold quality |
| monocyte | CL:0000576 | 93.17 | gold quality |
| bone marrow | UBERON:0002371 | 93.06 | gold quality |
| granulocyte | CL:0000094 | 93.01 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 92.64 | gold quality |
| leukocyte | CL:0000738 | 92.51 | gold quality |
| lymph node | UBERON:0000029 | 92.49 | gold quality |
| colonic mucosa | UBERON:0000317 | 92.48 | gold quality |
| gingival epithelium | UBERON:0001949 | 92.39 | gold quality |
| upper leg skin | UBERON:0004262 | 92.27 | gold quality |
| mononuclear cell | CL:0000842 | 92.18 | gold quality |
| cardia of stomach | UBERON:0001162 | 91.72 | gold quality |
| pylorus | UBERON:0001166 | 91.66 | gold quality |
| gingiva | UBERON:0001828 | 91.46 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 91.26 | gold quality |
| jejunal mucosa | UBERON:0000399 | 91.17 | gold quality |
| ganglionic eminence | UBERON:0004023 | 90.49 | gold quality |
| buccal mucosa cell | CL:0002336 | 90.48 | gold quality |
| ventricular zone | UBERON:0003053 | 90.44 | gold quality |
| cerebellar vermis | UBERON:0004720 | 90.40 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-11121 | yes | 1213.15 |
| E-MTAB-9221 | yes | 11.68 |
| E-HCAD-5 | yes | 9.58 |
| E-MTAB-6678 | yes | 4.41 |
| E-CURD-112 | yes | 3.82 |
| E-MTAB-10042 | no | 401.36 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): HOXA7, ZNF148
miRNA regulators (miRDB)
129 targeting EPB41, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-6748-5P | 100.00 | 65.81 | 1057 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-6759-5P | 99.99 | 66.54 | 785 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-4745-5P | 99.98 | 65.95 | 1028 |
| HSA-MIR-6793-5P | 99.97 | 65.95 | 758 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-381-3P | 99.93 | 71.87 | 2854 |
| HSA-MIR-6809-3P | 99.91 | 71.45 | 3814 |
| HSA-MIR-4493 | 99.90 | 66.48 | 977 |
Literature-anchored findings (GeneRIF, showing 40)
- Reassignment of the EPB4.1 gene to 1p36 and assessment of its involvement in neuroblastomas. (PMID:11737230)
- With deletions or mutations, the ability of the 8 amino acid motif (LKKNFMES) of the spectrin-actin-binding domain of erythrocyte protein 4.1 recombinant peptides to form ternary complexes with spectrin and actin is remarkably diminished. (PMID:12044158)
- falcipain-2-mediated cleavage of protein 4.1 occurs immediately after lysine 437, which lies within a region of the spectrin-actin-binding domain critical for erythrocyte membrane stability. (PMID:12130521)
- A splicing alteration of pre-mRNA generates 2 protein isoforms with distinct assembly to spindle poles in mitotic cells (PMID:12239178)
- A 4.1R isoform expressing the leucine-rich sequence binds to the export receptor CRM1 in a RanGTP-dependent fashion, whereas this does not occur in a mutant whose two conserved hydrophobic residues are substituted (PMID:12427749)
- synthesis of structurally distinct 4.1R protein isoforms in various cell types is regulated by a novel mechanism requiring coordination between upstream transcription initiation events and downstream alternative splicing events (PMID:12522012)
- A novel member of the protein 4.1 family was cloned; it has focal expression in the ovary. (PMID:12601556)
- protein 4.1R has a role in recruiting hDlg to the lateral membrane in epithelial cells (PMID:12807908)
- Protein 4.1R functions as an important tumor suppressor in the molecular pathogenesis of meningioma (PMID:12901833)
- interaction with nuclear actin during nuclear assembly in vitro (PMID:12960380)
- alpha-spectrin ubiquitination at repeats 20 and 21 increases the dissociation of the spectrin-protein-4.1-actin ternary complex thereby regulating protein 4.1’s ability to stimulate the spectrin-actin interaction (PMID:15040429)
- 135-kDa non-erythroid 4.1R has a role in cell division (PMID:15184364)
- protein 4.1R mitotic regulation involves phosphorylation by cdc2 kinase (PMID:15525677)
- 4.1R plays a key role at the centrosome, contributing to the maintenance of a radial microtubule organization (PMID:15564380)
- protein 4.1 phosphorylation modulates erythrocyte membrane mechanical function (PMID:15611095)
- Alternative splicing isoforms are present in muscular dystsrophy skeletal muscle. (PMID:15714879)
- 4.1R loss of expression was statistically more common in ependymomas. (PMID:15731777)
- We speculate that over the repetitive cycles of heart muscle contraction and relaxation, 4.1s are likely to locate, support, and coordinate functioning of key membrane-bound macromolecular assemblies. (PMID:15834631)
- 4.1R binds to the separate calponin homology CH1 and CH2 domains of beta I spectrin. (PMID:16060676)
- EPB41 gene expression was unchanged in all analyzed meningiomas. This suggests that involvement of the EPB41 gene (4.1R protein) in meningioma pathogenesis should be reconsidered. (PMID:16157202)
- interaction of protein 4.1 with TRPC4 is required for activation of the endothelial ISOC channel. (PMID:16254212)
- protein 4.1R interactions with membrane proteins are regulated by Ca2+ and calmodulin [review] (PMID:16368534)
- Fox-1 and Fox-2 splicing factors have roles in alternative splicing of protein 4.1R (PMID:16537540)
- 4.1R60 isoforms are constitutively self-associated, whereas 4.1R80 and 4.1R135 self-association is prevented by intramolecular interactions. (PMID:16881872)
- The interaction of Plasmodium falciparum EBA-181 with the highly conserved 10 kDa domain of 4.1R provides new insight into the molecular mechanisms utilized by P. falciparum during erythrocyte entry (PMID:17087826)
- A decreased expression pattern of the 4.1R protein was observed in the erythrocytes from patients with atypical NA. (PMID:17298666)
- A regulated splicing event in protein 4.1R pre-mRNA-the inclusion of exon 16-encoding peptides for spectrin-actin binding-occurs in late erythroid differentiation (PMID:17715393)
- A deficit in protein 4.1R is recurrent in myeloid malignancies and should be particularly investigated when deletion del (20 q) is present, since this chromosomal abnormality was present in four out of six patients. (PMID:17994571)
- In the 4.1R gene, intrasplicing ultimately determines N-terminal protein structure and function. (PMID:18079699)
- 4.1R makes crucial contributions to the structural integrity of centrosomes & mitotic spindles which normally enable mitosis and anaphase to proceed with coordinated precision. (PMID:18212055)
- Findings enable us to offer potential new insights into the differential contribution of 4.1R isoforms, 4.1R(80) and 4.1R(135), to membrane assembly during terminal erythroid differentiation. (PMID:18691159)
- p55 binds to two distinct sites within the FERM domain, and the alternatively spliced exon 5 is necessary for the membrane targeting of protein 4.1R in epithelial cells. (PMID:18952129)
- Study reports the first NMR-derived structure of the 4.1R FERM alpha-lobe domain and propose a new glycophorin C-binding site on the 4.1R FERM alpha-lobe domain, based on our NMR experiments. (PMID:19338061)
- Proteins in the membrane skeleton protein 4.1 family are weakly expressed in non-small cell lung cancer and are related to tumor cell differentiation. (PMID:19624891)
- 4.1R gene expression involves transcriptional regulation coupled with a complex splicing regulatory network. (PMID:19729518)
- 4.1R plays a role in the phosphatidylserine exposure signaling pathway that is of fundamental importance in red cell turnover. (PMID:19794081)
- Data suggest that one or both of proteins 4.1 and 4.2 cause a portion of band 3 to localize near the spectrin-actin junctions and provide another point of attachment between the membrane skeleton and the lipid bilayer. (PMID:20007969)
- Four EPB41 SNPs showed allelic and genotypic associations with MP in first stage. In the second stage, the allele rs4654388 showed the strongest significant association with MP. rs4654388 G-allele was associated with a significantly increased risk of MP. (PMID:20797695)
- in addition to two known minor shortened and stable spliceoforms, a 4.1R splicing mutation activates an intronic cryptic splice site, which results in a nonsense mRNA major isoform, targeted to degradation in intact cells by Nonsense-mediated mRNA decay. (PMID:20863723)
- Data provide evidence that 4.1R has functional interactions with emerin and A-type lamin that impact upon nuclear architecture, centrosome-nuclear envelope association and the regulation of beta-catenin transcriptional co-activator activity. (PMID:21486941)
Cross-species orthologs
10 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | epb41a | ENSDARG00000099283 |
| mus_musculus | Epb41 | ENSMUSG00000028906 |
| rattus_norvegicus | Epb41 | ENSRNOG00000010037 |
| drosophila_melanogaster | yrt | FBGN0004049 |
| drosophila_melanogaster | cora | FBGN0010434 |
| drosophila_melanogaster | Frmd5 | FBGN0032225 |
| caenorhabditis_elegans | erm-1 | WBGENE00001333 |
| caenorhabditis_elegans | frm-1 | WBGENE00001488 |
| caenorhabditis_elegans | WBGENE00001489 | |
| caenorhabditis_elegans | frm-4 | WBGENE00001491 |
Paralogs (10): MYLIP (ENSG00000007944), EPB41L2 (ENSG00000079819), EPB41L3 (ENSG00000082397), EPB41L1 (ENSG00000088367), EPB41L4B (ENSG00000095203), EPB41L5 (ENSG00000115109), EPB41L4A (ENSG00000129595), FRMD6 (ENSG00000139926), FRMD5 (ENSG00000171877), FRMD3 (ENSG00000172159)
Protein
Protein identifiers
Protein 4.1 — P11171 (reviewed: P11171)
Alternative names: 4.1R, Band 4.1, EPB4.1, Erythrocyte membrane protein band 4.1
All UniProt accessions (24): P11171, A0A1B0GWG0, A0A2R8Y420, A0A2R8Y4N6, A0A2R8Y570, A0A2R8Y5C8, A0A2R8Y5G2, A0A2R8Y5Z6, A0A2R8Y6D0, A0A2R8Y6G5, A0A2R8Y6T6, A0A2R8Y783, A0A2R8Y7N0, A0A2R8Y7Y3, A0A2R8YCW8, A0A2R8YD30, A0A2R8YFR9, A0A2R8YFU8, A0A2U3TZH6, A0A3B3ITC5, A0A3B3ITP0, A0A3B3IU06, A0A3B3IUD6, A0A994J847
UniProt curated annotations — full annotation on UniProt →
Function. Protein 4.1 is a major structural element of the erythrocyte membrane skeleton. It plays a key role in regulating membrane physical properties of mechanical stability and deformability by stabilizing spectrin-actin interaction. Recruits DLG1 to membranes. Required for dynein-dynactin complex and NUMA1 recruitment at the mitotic cell cortex during anaphase.
Subunit / interactions. Binds with a high affinity to glycophorin and with lower affinity to band III protein. Associates with the nuclear mitotic apparatus. Interacts with calmodulin. Interacts with CPAP. Interacts with DLG1. Also found to associate with contractile apparatus and tight junctions. Interacts with NUMA1; this interaction is negatively regulated by CDK1 during metaphase and promotes anaphase-specific localization of NUMA1 in symmetrically dividing cells. Interacts with ATP2B1; regulates small intestinal calcium absorption through regulation of membrane expression of ATP2B1.
Subcellular location. Cytoplasm. Cytoskeleton. Cell cortex. Nucleus.
Post-translational modifications. Phosphorylated at multiple sites by different protein kinases and each phosphorylation event selectively modulates the protein’s functions. Phosphorylation on Tyr-660 reduces the ability of 4.1 to promote the assembly of the spectrin/actin/4.1 ternary complex. O-glycosylated; contains N-acetylglucosamine side chains in the C-terminal domain.
Disease relevance. Elliptocytosis 1 (EL1) [MIM:611804] A Rhesus-linked form of hereditary elliptocytosis, a genetically heterogeneous, autosomal dominant hematologic disorder. It is characterized by variable hemolytic anemia and elliptical or oval red cell shape. The disease is caused by variants affecting the gene represented in this entry.
Isoforms (7)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P11171-1 | 1 | yes |
| P11171-2 | 2 | |
| P11171-3 | 3 | |
| P11171-4 | 4, Erythroid | |
| P11171-5 | 5, Non-erythroid A | |
| P11171-6 | 6, Non-erythroid B | |
| P11171-7 | 7 |
RefSeq proteins (22): NP_001159477, NP_001159478, NP_001159479, NP_001362942, NP_001362943, NP_001362944, NP_001362945, NP_001362946, NP_001362947, NP_001362948, NP_001362949, NP_001362950, NP_001362951, NP_001362952, NP_001362953, NP_001362954, NP_001362955, NP_001362956, NP_001362957, NP_004428, NP_976217, NP_976218 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000299 | FERM_domain | Domain |
| IPR000798 | Ez/rad/moesin-like | Family |
| IPR007477 | SAB_dom | Domain |
| IPR008379 | Band_4.1_C | Domain |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR014352 | FERM/acyl-CoA-bd_prot_sf | Homologous_superfamily |
| IPR014847 | FA | Domain |
| IPR018979 | FERM_N | Domain |
| IPR018980 | FERM_PH-like_C | Domain |
| IPR019747 | FERM_CS | Conserved_site |
| IPR019748 | FERM_central | Domain |
| IPR019749 | Band_41_domain | Domain |
| IPR021187 | EPB4.1_FERM_F1 | Domain |
| IPR029071 | Ubiquitin-like_domsf | Homologous_superfamily |
| IPR035963 | FERM_2 | Homologous_superfamily |
Pfam: PF00373, PF04382, PF05902, PF08736, PF09379, PF09380
UniProt features (94 total): modified residue 26, strand 14, helix 12, sequence conflict 10, compositionally biased region 9, region of interest 8, splice variant 8, mutagenesis site 2, turn 2, chain 1, domain 1, sequence variant 1
Structure
Experimental structures (PDB)
3 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3QIJ | X-RAY DIFFRACTION | 1.8 |
| 1GG3 | X-RAY DIFFRACTION | 2.8 |
| 2RQ1 | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P11171-F1 | 63.72 | 0.31 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (26): 14, 60, 84, 85, 95, 104, 121, 149, 151, 152, 188, 191, 222, 378, 521, 540, 542, 555, 660, 664 …
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 60 | loss of cdk1-mediated phosphorylation. abolishes targeting onto the mitotic spindle; when associated with a-712. |
| 712 | loss of cdk1-mediated phosphorylation. abolishes targeting onto the mitotic spindle; when associated with a-60. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-6794361 | Neurexins and neuroligins |
MSigDB gene sets: 361 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_BRAIN_TUMORAL_MACROPHAGE_UP, ATF_B, GOBP_DIGESTION, BROWNE_HCMV_INFECTION_6HR_DN, GOBP_RESPONSE_TO_FLUID_SHEAR_STRESS, PEREZ_TP63_TARGETS, GOBP_POSITIVE_REGULATION_OF_PROTEIN_LOCALIZATION, AREB6_01, KEGG_TIGHT_JUNCTION, RIZKI_TUMOR_INVASIVENESS_3D_DN, GOBP_PROTEIN_LOCALIZATION_TO_CELL_PERIPHERY, GOBP_MONOATOMIC_CATION_TRANSPORT, AGGCACT_MIR5153P, PUJANA_CHEK2_PCC_NETWORK, GOBP_POSITIVE_REGULATION_OF_PROTEIN_LOCALIZATION_TO_CELL_PERIPHERY
GO Biological Process (7): actin cytoskeleton organization (GO:0030036), cortical actin cytoskeleton organization (GO:0030866), actomyosin structure organization (GO:0031032), cell division (GO:0051301), regulation of calcium ion transport (GO:0051924), regulation of intestinal absorption (GO:1904478), positive regulation of protein localization to cell cortex (GO:1904778)
GO Molecular Function (9): actin binding (GO:0003779), structural constituent of cytoskeleton (GO:0005200), calmodulin binding (GO:0005516), 1-phosphatidylinositol binding (GO:0005545), spectrin binding (GO:0030507), phosphoprotein binding (GO:0051219), structural molecule activity (GO:0005198), protein binding (GO:0005515), cytoskeletal protein binding (GO:0008092)
GO Cellular Component (15): cytosol (GO:0005829), cytoskeleton (GO:0005856), plasma membrane (GO:0005886), cell cortex (GO:0005938), spectrin-associated cytoskeleton (GO:0014731), basolateral plasma membrane (GO:0016323), nuclear body (GO:0016604), cell junction (GO:0030054), cortical cytoskeleton (GO:0030863), protein-containing complex (GO:0032991), intercellular bridge (GO:0045171), mitotic spindle (GO:0072686), nucleus (GO:0005634), cytoplasm (GO:0005737), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Protein-protein interactions at synapses | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| cytoskeleton | 3 |
| protein binding | 3 |
| cytoskeleton organization | 2 |
| actin cytoskeleton organization | 2 |
| cytoskeletal protein binding | 2 |
| cytoplasm | 2 |
| intracellular membraneless organelle | 2 |
| cell periphery | 2 |
| actin filament-based process | 1 |
| cortical cytoskeleton organization | 1 |
| cellular process | 1 |
| calcium ion transport | 1 |
| regulation of metal ion transport | 1 |
| regulation of digestive system process | 1 |
| intestinal absorption | 1 |
| protein localization to cell cortex | 1 |
| positive regulation of protein localization to cell periphery | 1 |
| regulation of protein localization to cell cortex | 1 |
| structural molecule activity | 1 |
| phospholipid binding | 1 |
| protein-containing complex binding | 1 |
| molecular_function | 1 |
| binding | 1 |
| membrane | 1 |
| basal plasma membrane | 1 |
| plasma membrane region | 1 |
| nucleoplasm | 1 |
| cell cortex | 1 |
| cellular_component | 1 |
| spindle | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
1576 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EPB41 | ANK1 | P16157 | 997 |
| EPB41 | GYPC | P04921 | 996 |
| EPB41 | ANK3 | Q12955 | 996 |
| EPB41 | ANK2 | Q01484 | 996 |
| EPB41 | ADD1 | P35611 | 994 |
| EPB41 | ADD2 | P35612 | 993 |
| EPB41 | ADD3 | Q9UEY8 | 993 |
| EPB41 | DMTN | Q08495 | 989 |
| EPB41 | SPTB | P11277 | 972 |
| EPB41 | EZR | P15311 | 935 |
| EPB41 | CADM1 | Q9BY67 | 917 |
| EPB41 | RDX | P35241 | 894 |
| EPB41 | DLG1 | Q12959 | 892 |
| EPB41 | SLC4A1 | P02730 | 890 |
| EPB41 | MPP1 | Q00013 | 871 |
IntAct
182 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MED4 | MED19 | psi-mi:“MI:2364”(proximity) | 0.900 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| YWHAG | BLTP3B | psi-mi:“MI:0914”(association) | 0.640 |
| DDAH2 | EPB41L2 | psi-mi:“MI:0914”(association) | 0.640 |
| SNRPB | SART1 | psi-mi:“MI:0914”(association) | 0.640 |
| YWHAH | BLTP3B | psi-mi:“MI:0914”(association) | 0.570 |
| EPB41L1 | AP3B1 | psi-mi:“MI:0914”(association) | 0.530 |
| EPB41L3 | AP3B1 | psi-mi:“MI:0914”(association) | 0.530 |
| YWHAQ | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| MYL12B | psi-mi:“MI:0914”(association) | 0.460 | |
| CASK | EPB41 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| NSD3 | EPB41 | psi-mi:“MI:0915”(physical association) | 0.400 |
| EPB41 | GYPC | psi-mi:“MI:0915”(physical association) | 0.400 |
| ORF73 | ECI2 | psi-mi:“MI:0914”(association) | 0.350 |
| BCAR1 | PSMD11 | psi-mi:“MI:0914”(association) | 0.350 |
| BCAR1 | MYO1C | psi-mi:“MI:0914”(association) | 0.350 |
| ESR1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| LRRK2 | psi-mi:“MI:0914”(association) | 0.350 | |
| YWHAG | C1orf226 | psi-mi:“MI:0914”(association) | 0.350 |
| KDM4C | SMCHD1 | psi-mi:“MI:0914”(association) | 0.350 |
| EEF2K | CNOT1 | psi-mi:“MI:0914”(association) | 0.350 |
| CHEK2 | EPB41 | psi-mi:“MI:0914”(association) | 0.350 |
| NFE2L2 | MYO1D | psi-mi:“MI:0914”(association) | 0.350 |
| FGFR3 | U2SURP | psi-mi:“MI:0914”(association) | 0.350 |
| MAPT | SHTN1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (170): EPB41 (Two-hybrid), RWDD2B (Two-hybrid), ZCCHC10 (Two-hybrid), EPB41 (Affinity Capture-MS), EPB41 (Co-fractionation), SF3A3 (Co-fractionation), EPB41 (Affinity Capture-MS), EPB41 (Proximity Label-MS), EPB41 (Proximity Label-MS), EPB41 (Proximity Label-MS), EPB41 (Affinity Capture-RNA), EPB41 (Affinity Capture-MS), EPB41 (Affinity Capture-RNA), MYH9 (Affinity Capture-MS), EPB41 (Affinity Capture-MS)
ESM2 similar proteins: A2AD83, A4Q9F0, A6QP06, A7KAX9, B2RYE5, B4K6T8, F7E540, G5EEW9, O00443, O13839, O43283, O96838, P11171, P11434, P48193, Q12923, Q14693, Q22744, Q3V0G7, Q5FVG2, Q5R8N8, Q5R8X7, Q5RAY1, Q61194, Q64512, Q6DTM3, Q6GPD0, Q6Q7P4, Q6ZT98, Q6ZUT3, Q811P8, Q8BGS1, Q8BPQ7, Q8CHB8, Q8K3Y6, Q8WYB5, Q91573, Q91ZP3, Q96HH9, Q99PI5
Diamond homologs: A2A2Y4, A2AD83, A2ALK8, B2RYE5, F1LYQ8, F1P065, F8VPU2, O43491, O57457, O70318, O94887, P11171, P11434, P26045, P28191, P29074, P48193, P52963, Q0P4Q4, Q54K81, Q58CU2, Q5FVG2, Q5R803, Q5RAB8, Q6P5H6, Q6Q7P4, Q6ZUT3, Q7Z6J6, Q8BGS1, Q8BHD4, Q91VS8, Q9H329, Q9H4G0, Q9HCM4, Q9HCS5, Q9JMC8, Q9MYU8, Q9N179, Q9V8R9, Q9WTP0
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| EGFR | down-regulates | EPB41 | phosphorylation |
| EPB41 | “up-regulates activity” | NUMA1 | relocalization |
| EPB41 | “form complex” | “4.1 complex” | binding |
| EPB41 | “up-regulates activity” | DLG1 | relocalization |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 194 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Antigen processing: Ub, ATP-independent proteasomal degradation | 7 | 24.4× | 3e-07 |
| Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex | 5 | 20.5× | 4e-05 |
| Vif-mediated degradation of APOBEC3G | 10 | 15.5× | 2e-07 |
| RHO GTPases activate PKNs | 8 | 15.5× | 8e-07 |
| Regulation of activated PAK-2p34 by proteasome mediated degradation | 9 | 15.3× | 3e-07 |
| AUF1 (hnRNP D0) binds and destabilizes mRNA | 10 | 15.1× | 2e-07 |
| GSK3B and BTRC:CUL1-mediated-degradation of NFE2L2 | 10 | 15.1× | 2e-07 |
| Regulation of ornithine decarboxylase (ODC) | 9 | 14.9× | 3e-07 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
303 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 17 |
| Likely pathogenic | 17 |
| Uncertain significance | 164 |
| Likely benign | 40 |
| Benign | 18 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 16711 | NM_203342.2(EPB41):c.-159_159del | Pathogenic |
| 16712 | NM_004437.3(EPB41):c.1219_1587del | Pathogenic |
| 16713 | NM_004437.3(EPB41):c.1219_1458del | Pathogenic |
| 16714 | NM_001376013.1(EPB41):c.629T>G (p.Met210Arg) | Pathogenic |
| 16715 | NM_001376013.1(EPB41):c.629T>C (p.Met210Thr) | Pathogenic |
| 221297 | NM_001376013.1(EPB41):c.1071_1077del (p.Asn358fs) | Pathogenic |
| 2779958 | NM_001376013.1(EPB41):c.2143C>T (p.Arg715Ter) | Pathogenic |
| 2819907 | NM_001376013.1(EPB41):c.1473dup (p.Thr492fs) | Pathogenic |
| 3341889 | NM_001376013.1(EPB41):c.1059dup (p.Lys354Ter) | Pathogenic |
| 3667832 | NM_001376013.1(EPB41):c.820C>T (p.Gln274Ter) | Pathogenic |
| 3727875 | NM_001376013.1(EPB41):c.1301G>A (p.Trp434Ter) | Pathogenic |
| 3766780 | NM_001376013.1(EPB41):c.741del (p.Glu248fs) | Pathogenic |
| 4279438 | GRCh37/hg19 1p35.3(chr1:29242759-29427780)x1 | Pathogenic |
| 4728387 | NM_001376013.1(EPB41):c.659_660del (p.Thr220fs) | Pathogenic |
| 4736259 | NM_001376013.1(EPB41):c.2179G>T (p.Glu727Ter) | Pathogenic |
| 4779011 | NM_001376013.1(EPB41):c.742G>T (p.Glu248Ter) | Pathogenic |
| 620455 | NM_001376013.1(EPB41):c.666T>G (p.Tyr222Ter) | Pathogenic |
| 1163136 | NM_001376013.1(EPB41):c.1744dup (p.Thr582fs) | Likely pathogenic |
| 1324333 | NM_001376013.1(EPB41):c.712C>T (p.Arg238Ter) | Likely pathogenic |
| 1324334 | NM_001376013.1(EPB41):c.1175del (p.Lys392fs) | Likely pathogenic |
| 1330707 | NM_001376013.1(EPB41):c.2065A>T (p.Lys689Ter) | Likely pathogenic |
| 2440049 | NM_001376013.1(EPB41):c.1330dup (p.Arg444fs) | Likely pathogenic |
| 2446433 | NM_001376013.1(EPB41):c.768G>A (p.Trp256Ter) | Likely pathogenic |
| 2631490 | NM_001376013.1(EPB41):c.1652C>A (p.Ser551Ter) | Likely pathogenic |
| 2690597 | NM_001376013.1(EPB41):c.2085_2089del (p.Val696fs) | Likely pathogenic |
| 2855191 | NM_001376013.1(EPB41):c.1636+1G>T | Likely pathogenic |
| 3391109 | NM_001376013.1(EPB41):c.902C>G (p.Thr301Arg) | Likely pathogenic |
| 4081367 | NM_001376013.1(EPB41):c.818del (p.Lys273fs) | Likely pathogenic |
| 4081369 | NM_001376013.1(EPB41):c.1295del (p.Phe432fs) | Likely pathogenic |
| 4081370 | NM_001376013.1(EPB41):c.1609A>T (p.Lys537Ter) | Likely pathogenic |
SpliceAI
4279 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:28887208:CAGG:C | donor_loss | 1.0000 |
| 1:28887211:G:GA | donor_loss | 1.0000 |
| 1:28987426:A:AG | acceptor_gain | 1.0000 |
| 1:28987427:A:G | acceptor_gain | 1.0000 |
| 1:28987428:T:G | acceptor_gain | 1.0000 |
| 1:28987429:A:AG | acceptor_gain | 1.0000 |
| 1:28987430:G:GG | acceptor_gain | 1.0000 |
| 1:28987430:GC:G | acceptor_gain | 1.0000 |
| 1:28987430:GCA:G | acceptor_gain | 1.0000 |
| 1:28987430:GCAA:G | acceptor_gain | 1.0000 |
| 1:28987430:GCAAC:G | acceptor_gain | 1.0000 |
| 1:28987906:G:GC | donor_loss | 1.0000 |
| 1:28987907:T:A | donor_loss | 1.0000 |
| 1:28993303:T:A | acceptor_gain | 1.0000 |
| 1:29015686:TTATA:T | acceptor_loss | 1.0000 |
| 1:29015687:TATAG:T | acceptor_loss | 1.0000 |
| 1:29015689:TAG:T | acceptor_loss | 1.0000 |
| 1:29015691:GGT:G | acceptor_gain | 1.0000 |
| 1:29015763:ACAAG:A | donor_loss | 1.0000 |
| 1:29015764:CAAGG:C | donor_loss | 1.0000 |
| 1:29015768:G:GA | donor_loss | 1.0000 |
| 1:29015769:T:A | donor_loss | 1.0000 |
| 1:29018439:ACAG:A | donor_loss | 1.0000 |
| 1:29018442:GG:G | donor_loss | 1.0000 |
| 1:29018443:G:A | donor_loss | 1.0000 |
| 1:29030388:A:AG | acceptor_gain | 1.0000 |
| 1:29030389:T:G | acceptor_gain | 1.0000 |
| 1:29030393:A:AG | acceptor_gain | 1.0000 |
| 1:29030394:T:G | acceptor_gain | 1.0000 |
| 1:29030396:A:AG | acceptor_gain | 1.0000 |
AlphaMissense
5681 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:29018244:T:C | L309P | 1.000 |
| 1:29030419:G:C | A382P | 1.000 |
| 1:29033118:T:C | L413P | 1.000 |
| 1:29033120:G:C | G414R | 1.000 |
| 1:29033139:T:C | L420P | 1.000 |
| 1:29033145:T:A | V422D | 1.000 |
| 1:29033174:T:C | F432L | 1.000 |
| 1:29033175:T:C | F432S | 1.000 |
| 1:29033176:C:A | F432L | 1.000 |
| 1:29033176:C:G | F432L | 1.000 |
| 1:29033180:T:A | W434R | 1.000 |
| 1:29033180:T:C | W434R | 1.000 |
| 1:29033182:G:C | W434C | 1.000 |
| 1:29033182:G:T | W434C | 1.000 |
| 1:29033193:T:C | L438P | 1.000 |
| 1:29033195:A:G | K439E | 1.000 |
| 1:29033208:A:T | K443I | 1.000 |
| 1:29033220:T:C | F447S | 1.000 |
| 1:29033226:T:A | I449N | 1.000 |
| 1:29033228:A:G | K450E | 1.000 |
| 1:29035853:T:C | F465L | 1.000 |
| 1:29035854:T:C | F465S | 1.000 |
| 1:29035855:C:A | F465L | 1.000 |
| 1:29035855:C:G | F465L | 1.000 |
| 1:29035860:T:C | L467P | 1.000 |
| 1:29035878:C:A | A473D | 1.000 |
| 1:29035889:T:A | W477R | 1.000 |
| 1:29035889:T:C | W477R | 1.000 |
| 1:29035891:G:C | W477C | 1.000 |
| 1:29035891:G:T | W477C | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000014912 (1:29119298 ATG>A), RS1000015671 (1:28924821 G>C), RS1000022462 (1:29037490 C>T), RS1000037036 (1:29057765 A>G,T), RS1000055003 (1:29106735 G>A,T), RS1000060399 (1:29106449 T>C), RS1000065497 (1:29011228 G>T), RS1000068067 (1:28925169 T>C), RS1000071955 (1:29025713 T>C), RS1000085601 (1:29057486 T>G), RS1000086789 (1:28965428 A>G,T), RS1000090746 (1:29106460 T>C), RS1000120286 (1:29113276 G>A), RS1000121131 (1:29042492 T>G), RS1000130058 (1:28971180 CTTTTTTTTTTTTTTTTTT>C,CTTTT,CTTTTT,CTTTTTT,CTTTTTTT,CTTTTTTTT,CTTTTTTTTT,CTTTTTTTTTT,CTTTTTTTTTTT,CTTTTTTTTTTTT,CTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT)
Disease associations
OMIM: gene MIM:130500 | disease phenotypes: MIM:611804
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| elliptocytosis 1 | Definitive | Semidominant |
| hereditary elliptocytosis | Supportive | Autosomal dominant |
Mondo (2): elliptocytosis 1 (MONDO:0012731), hereditary elliptocytosis (MONDO:0017319)
Orphanet (1): Hereditary elliptocytosis (Orphanet:288)
HPO phenotypes
26 total (26 of 26 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000952 | Jaundice |
| HP:0000980 | Pallor |
| HP:0001081 | Cholelithiasis |
| HP:0001744 | Splenomegaly |
| HP:0001789 | Hydrops fetalis |
| HP:0001877 | Abnormal erythrocyte morphology |
| HP:0001878 | Hemolytic anemia |
| HP:0001923 | Reticulocytosis |
| HP:0001945 | Fever |
| HP:0002007 | Frontal bossing |
| HP:0002027 | Abdominal pain |
| HP:0002904 | Hyperbilirubinemia |
| HP:0003265 | Neonatal hyperbilirubinemia |
| HP:0003546 | Exercise intolerance |
| HP:0004445 | Elliptocytosis |
| HP:0004446 | Stomatocytosis |
| HP:0004447 | Poikilocytosis |
| HP:0004804 | Congenital hemolytic anemia |
| HP:0005502 | Increased red cell osmotic fragility |
| HP:0006579 | Prolonged neonatal jaundice |
| HP:0008897 | Postnatal growth retardation |
| HP:0012378 | Fatigue |
| HP:0025143 | Chills |
| HP:0200042 | Skin ulcer |
GWAS associations
15 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002337_76 | Amyotrophic lateral sclerosis (sporadic) | 6.000000e-06 |
| GCST007277_1 | Tourette syndrome | 2.000000e-06 |
| GCST010083_183 | Hemoglobin levels | 1.000000e-09 |
| GCST012325_1 | HDL levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder | 4.000000e-07 |
| GCST90002385_607 | High light scatter reticulocyte count | 2.000000e-11 |
| GCST90002386_312 | High light scatter reticulocyte percentage of red cells | 7.000000e-11 |
| GCST90002391_58 | Mean corpuscular hemoglobin concentration | 1.000000e-11 |
| GCST90002396_122 | Mean reticulocyte volume | 5.000000e-12 |
| GCST90002396_123 | Mean reticulocyte volume | 1.000000e-13 |
| GCST90002396_124 | Mean reticulocyte volume | 7.000000e-74 |
| GCST90002397_622 | Mean spheric corpuscular volume | 4.000000e-10 |
| GCST90002397_623 | Mean spheric corpuscular volume | 4.000000e-77 |
| GCST90002401_11 | Platelet distribution width | 6.000000e-16 |
| GCST90002405_600 | Reticulocyte count | 9.000000e-24 |
| GCST90002406_137 | Reticulocyte fraction of red cells | 6.000000e-25 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004509 | hemoglobin measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0005658 | response to selective serotonin reuptake inhibitor |
| EFO:0007986 | reticulocyte count |
| EFO:0004528 | mean corpuscular hemoglobin concentration |
| EFO:0010701 | mean reticulocyte volume |
| EFO:0007984 | platelet component distribution width |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D004612 | Elliptocytosis, Hereditary | C15.378.050.141.150.365; C16.320.070.365 |
| C567520 | Elliptocytosis 1 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6066965 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs6702335 | Efficacy | 3 | bupropion;nicotine | Tobacco Use Disorder |
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs6702335 | EPB41 | 3 | 3.25 | 1 | bupropion;nicotine |
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 8.11 | Kd | 7.837 | nM | CHEMBL5653589 |
| 8.11 | ED50 | 7.837 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148322: Binding affinity to human EPB41 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0078 | uM |
CTD chemical–gene interactions
39 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression, increases methylation | 5 |
| sodium arsenite | affects methylation, decreases expression, increases abundance, increases expression | 4 |
| bisphenol A | decreases expression, increases expression, increases methylation | 3 |
| Acetaminophen | decreases expression | 3 |
| Air Pollutants | decreases expression, increases abundance, increases expression | 2 |
| Arsenic | affects methylation, increases abundance, increases expression | 2 |
| Benzo(a)pyrene | affects methylation, decreases expression | 2 |
| Cyclosporine | increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | increases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| 9-hydroxyoctadecadienoic acid | increases expression | 1 |
| pirinixic acid | increases expression, affects binding, increases activity | 1 |
| trichostatin A | increases expression | 1 |
| 11-nor-delta(9)-tetrahydrocannabinol-9-carboxylic acid | affects methylation, increases abundance | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| manganese chloride | increases abundance, increases expression | 1 |
| potassium chromate(VI) | increases expression | 1 |
| coumarin | decreases phosphorylation | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| chromium hexavalent ion | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| bisphenol S | decreases methylation | 1 |
| LDN 193189 | affects cotreatment, increases expression | 1 |
| Decitabine | affects expression | 1 |
| Sunitinib | increases expression | 1 |
| Vorinostat | decreases expression | 1 |
| Caffeine | decreases phosphorylation | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5651364 | Binding | Binding affinity to human EPB41 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Clinical trials (associated diseases)
2 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00723567 | Not specified | COMPLETED | A Novel Mutation of the Spectrin Gene |
| NCT01923376 | Not specified | WITHDRAWN | Hepatic Encephalopathy: Lactulose or Polyethylene Glycol (H.E.L.P.) |
Related Atlas pages
- Associated diseases: elliptocytosis 1, hereditary elliptocytosis
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): elliptocytosis 1, hereditary elliptocytosis