EPCAM
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Also known as Ly74TROP1GA733-2EGP34EGP40EGP-2KSACD326Ep-CAMHEA125KS1/4MK-1MH99MOC31MOC-31323/A317-1ATACST-1CO-17AESA
Summary
EPCAM (epithelial cell adhesion molecule, HGNC:11529) is a protein-coding gene on chromosome 2p21, encoding Epithelial cell adhesion molecule (P16422). May act as a physical homophilic interaction molecule between intestinal epithelial cells (IECs) and intraepithelial lymphocytes (IELs) at the mucosal epithelium for providing immunological barrier as a first line of defense against mucosal infection.
This gene encodes a carcinoma-associated antigen and is a member of a family that includes at least two type I membrane proteins. This antigen is expressed on most normal epithelial cells and gastrointestinal carcinomas and functions as a homotypic calcium-independent cell adhesion molecule. The antigen is being used as a target for immunotherapy treatment of human carcinomas. Mutations in this gene result in congenital tufting enteropathy.
Source: NCBI Gene 4072 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Lynch syndrome (Definitive, ClinGen) — +3 more curated relationships
- GWAS associations: 2
- Clinical variants (ClinVar): 1,103 total — 122 pathogenic, 17 likely-pathogenic
- Phenotypes (HPO): 97
- Druggable target: yes
- MANE Select transcript:
NM_002354
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11529 |
| Approved symbol | EPCAM |
| Name | epithelial cell adhesion molecule |
| Location | 2p21 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | Ly74, TROP1, GA733-2, EGP34, EGP40, EGP-2, KSA, CD326, Ep-CAM, HEA125, KS1/4, MK-1, MH99, MOC31, MOC-31, 323/A3, 17-1A, TACST-1, CO-17A, ESA, BerEp4, Ber-Ep4 |
| Ensembl gene | ENSG00000119888 |
| Ensembl biotype | protein_coding |
| OMIM | 185535 |
| Entrez | 4072 |
Gene structure
Transcript identifiers
Ensembl transcripts: 13 — 10 protein_coding, 2 retained_intron, 1 nonsense_mediated_decay
ENST00000263735, ENST00000405271, ENST00000419334, ENST00000456133, ENST00000474691, ENST00000490733, ENST00000895681, ENST00000895682, ENST00000895683, ENST00000895684, ENST00000895685, ENST00000934495, ENST00000934496
RefSeq mRNA: 1 — MANE Select: NM_002354
NM_002354
CCDS: CCDS1833
Canonical transcript exons
ENST00000263735 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000809826 | 47373808 | 47374048 |
| ENSE00000962738 | 47373463 | 47373570 |
| ENSE00001069309 | 47369311 | 47369581 |
| ENSE00001683862 | 47386572 | 47387020 |
| ENSE00003480953 | 47378953 | 47379054 |
| ENSE00003513916 | 47385166 | 47385210 |
| ENSE00003552250 | 47375234 | 47375299 |
| ENSE00003560359 | 47379769 | 47379969 |
| ENSE00003643653 | 47377014 | 47377077 |
Expression profiles
Bgee: expression breadth ubiquitous, 253 present calls, max score 99.94.
FANTOM5 (CAGE): breadth broad, TPM avg 62.4018 / max 2406.5364, expressed in 822 samples.
FANTOM5 promoters (12 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 20151 | 56.5318 | 715 |
| 20148 | 2.2678 | 558 |
| 20152 | 1.0614 | 437 |
| 20153 | 0.9200 | 439 |
| 20155 | 0.5506 | 257 |
| 20150 | 0.2934 | 188 |
| 20156 | 0.2070 | 105 |
| 20154 | 0.2049 | 101 |
| 20149 | 0.1865 | 124 |
| 20147 | 0.0889 | 36 |
Top tissues by expression
288 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| jejunal mucosa | UBERON:0000399 | 99.94 | gold quality |
| colonic mucosa | UBERON:0000317 | 99.84 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 99.83 | gold quality |
| rectum | UBERON:0001052 | 99.76 | gold quality |
| duodenum | UBERON:0002114 | 99.73 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 99.67 | gold quality |
| renal medulla | UBERON:0000362 | 99.53 | gold quality |
| corpus epididymis | UBERON:0004359 | 99.52 | gold quality |
| islet of Langerhans | UBERON:0000006 | 99.46 | gold quality |
| bronchial epithelial cell | CL:0002328 | 99.43 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 99.26 | gold quality |
| caput epididymis | UBERON:0004358 | 99.26 | gold quality |
| ileal mucosa | UBERON:0000331 | 99.17 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 99.07 | gold quality |
| nephron tubule | UBERON:0001231 | 99.06 | gold quality |
| bronchus | UBERON:0002185 | 99.00 | gold quality |
| pancreatic ductal cell | CL:0002079 | 98.96 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 98.87 | gold quality |
| thyroid gland | UBERON:0002046 | 98.84 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 98.68 | gold quality |
| body of pancreas | UBERON:0001150 | 98.60 | gold quality |
| pancreas | UBERON:0001264 | 98.52 | gold quality |
| metanephros cortex | UBERON:0010533 | 98.34 | gold quality |
| pylorus | UBERON:0001166 | 98.33 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 98.33 | gold quality |
| gall bladder | UBERON:0002110 | 98.32 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 98.26 | gold quality |
| secondary oocyte | CL:0000655 | 98.23 | gold quality |
| seminal vesicle | UBERON:0000998 | 98.22 | gold quality |
| right uterine tube | UBERON:0001302 | 98.15 | gold quality |
Single-cell (SCXA)
Detected in 32 experiment(s), a significant marker in 28.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9906 | yes | 2378.52 |
| E-CURD-46 | yes | 1473.62 |
| E-GEOD-124472 | yes | 1434.74 |
| E-CURD-88 | yes | 1426.53 |
| E-CURD-53 | yes | 1123.40 |
| E-MTAB-9388 | yes | 1040.45 |
| E-MTAB-10485 | yes | 1021.18 |
| E-MTAB-9154 | yes | 935.90 |
| E-GEOD-114530 | yes | 907.53 |
| E-CURD-114 | yes | 818.92 |
| E-MTAB-10662 | yes | 814.20 |
| E-HCAD-10 | yes | 802.45 |
| E-MTAB-10287 | yes | 739.11 |
| E-MTAB-8205 | yes | 437.33 |
| E-MTAB-10042 | yes | 381.22 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
4 targets.
| Target | Regulation |
|---|---|
| CCNA2 | Activation |
| CCNE1 | Activation |
| FABP5 | Activation |
| MYC | Activation |
Upstream regulators (CollecTRI, top): AR, CTNNB1, DNMT1, DNMT3A, FOXA2, HDAC1, HOXA10, KLF4, NANOG, NFKB1, NFKB, NFKBID, RELA, SALL4, TCF7L2, TP53, ZEB1, ZKSCAN7
miRNA regulators (miRDB)
52 targeting EPCAM, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-6079 | 99.84 | 68.54 | 1170 |
| HSA-MIR-4307 | 99.82 | 70.45 | 3374 |
| HSA-MIR-3121-3P | 99.82 | 71.96 | 3630 |
| HSA-MIR-498-5P | 99.76 | 69.64 | 1807 |
| HSA-MIR-4719 | 99.73 | 72.10 | 3329 |
| HSA-MIR-12129 | 99.72 | 67.45 | 1311 |
| HSA-MIR-4755-5P | 99.71 | 70.34 | 2716 |
| HSA-MIR-5006-3P | 99.71 | 70.26 | 2728 |
| HSA-MIR-33A-3P | 99.70 | 70.27 | 3362 |
| HSA-MIR-466 | 99.67 | 70.85 | 2863 |
| HSA-MIR-567 | 99.63 | 68.57 | 1219 |
| HSA-MIR-1290 | 99.59 | 69.90 | 2079 |
| HSA-MIR-4328 | 99.57 | 71.06 | 4094 |
| HSA-MIR-3942-3P | 99.57 | 69.03 | 2854 |
| HSA-MIR-297 | 99.40 | 69.58 | 1418 |
| HSA-MIR-513A-3P | 99.39 | 70.63 | 3620 |
| HSA-MIR-513C-3P | 99.39 | 70.63 | 3620 |
| HSA-MIR-4318 | 99.38 | 66.94 | 1505 |
| HSA-MIR-6828-5P | 99.31 | 69.21 | 1433 |
Literature-anchored findings (GeneRIF, showing 40)
- Correlation of COX-2 and Ep-CAM overexpression in human invasive breast cancer and its impact on survival. (PMID:12592372)
- amplification is induced by mutations in TP53 (PMID:12642870)
- A 1100 bp fragment of the EpCAM promoter containing the 570 bp fragment and additional 550 bp upstream has been cloned (PMID:12926061)
- Human EGP-2 antigen on epithelial cells of transgenic trachea transplants induces specific humoral and cellular immune responses, leading to mild form of obliterative airway disease. (egp-2) (PMID:14557747)
- Epithelial cell adhesion molecule has a role in progression of renal cell carcinoma but is absent in clear cell carcinoma (PMID:15102668)
- Ep-CAM antigen represents an attractive target for specific therapies with monoclonal antibodies or specific vaccines in patients with Ep-CAM-overexpressing gallbladder carcinoma. (PMID:15131054)
- EpCAM up-regulates c-myc and induces cell proliferation (PMID:15195135)
- up-regulation of DDR1, CLDN3, and epithelial cell adhesion molecule are early events in the development of epithelial ovarian cancer (PMID:15240533)
- Vaccination with Ep-CAM protein may warrant further investigation as a novel therapeutic approach to colorectal cancer. (PMID:15328177)
- EpCAM is vastly expressed in retinoblastoma; EpCAM reactivity was significantly higher in the invasive than the noninvasive tumors and in poorly differentiated than in well-differentiated tumors (PMID:15557427)
- Ep-CAM was distributed differently in normal and various malignant colon tissues. MAbs against Ep-CAM may have diagnostic and therapeutic value to various colon carcinomas. (PMID:15637741)
- EpCAM shown to be signal transducing membrane protein involved in carcinogenesis via its ability to induce genes involved in cellular metabolism and proliferation (PMID:15922867)
- EpCAM expression in blood and primary and metastatic tumors is transient and dependent upon the local micro-environment (PMID:15942643)
- The carcinoma-specific epithelial glycoprotein-2 promoter controls efficient and selective gene expression in an adenoviral context. (PMID:16096650)
- MK-1 expression was found in 61% of samples. (PMID:16616808)
- Tumor-specific EpCAM expression and release into the circulation may serve as effective immunotherapy in esophageal cancer patients. (PMID:17143526)
- downregulation of EGP-2 promoter activity using zinc finger protein transcription factors may result in a novel anti-cancer treatment. (PMID:17186549)
- claudin-7-associated EpCAM is recruited into (tetraspanin-enriched membrane microdomains) and forms a complex with CO-029 and CD44v6 that facilitates metastasis formation (PMID:17579117)
- analysis of EpCAM expression in normal, non-pathological tissues (PMID:17981779)
- EpCAM is a Wnt-beta-catenin signaling target gene (PMID:18006828)
- The spatiotemporal expression pattern of EpCAM changes during nephrogenesis (PMID:18025791)
- EpCAM expression in gallbladder tumors may serve as a prognostic factor for poor survival. (PMID:18285265)
- EpCAM and alpha-fetoprotein are expressed in hepatocellular carcinoma (PMID:18316609)
- Active DNA methylation leads to sustained silencing of endogenous EpCAM expression. (PMID:18398839)
- Perspectives for EpCAM-targeted apoptosis induction in cancer by EpCAM-selective bispecific antibodies. [REVIEW} (PMID:18508568)
- EpCAM is strongly over-expressed in a variety of carcinomas; mutants of EpCAM that substitute asparagine198 for alanine show a decreased expression and half-life at the plasma membrane. (PMID:18508581)
- Mutations in the gene for EpCAM are responsible for congenital tufting enteropathy. (PMID:18572020)
- Reduced expression of EpCAM and villin is associated withn Barrett’s adenocarcinoma and expression of EpCam and villin differs only between squamous epithelium and Barrett esophagus (PMID:18688077)
- unmethylation of the EpCAM promoter region was associated with EpCAM overexpression; however, it was not responsible for EpCAM overexpression by itself. (PMID:18949402)
- These data suggest that EpCAM is involved in signal transduction triggering several intracellular signalling pathways using tumor cell lines in colorectal and lung cancer. (PMID:19002182)
- the transcripts upregulated according to disease progression were associated with signaling pathway/transcription, including tumor-associated calcium signal transducer 1 and chemokine ligand 19, and with cell communication, such as collagen. (PMID:19012040)
- Ep-CAM was present in urothelial cell carcinoma in situ (CIS) of the bladder with a heterogeneous staining pattern. (PMID:19019843)
- EpCAM (TACSTD1) gene mutations occur in Lynch Syndrome and result in methylation of the 3’ located msh2 gene, which is involved in mismatch repair. (PMID:19098912)
- Patients from Dutch and Chinese families with MSH2-deficient tumors carrying heterozygous germline deletions of the last exons of TACSTD1, a gene directly upstream of MSH2 encoding Ep-CAM, are described. (PMID:19098912)
- EpCAM is frequently over-expressed on cancer initiating cells in various tumour entities (PMID:19132011)
- EpCAM signals to the cell nucleus following regulated intramembrane proteolysis and nuclear translocation of its intracellular domain (EpICD). EpICD on its own (26aa) is highly tumourigenic in SCID mice. (PMID:19136966)
- Here we show that regulated intramembrane proteolysis activates EpCAM as a mitogenic signal transducer in vitro and in vivo. (PMID:19136966)
- Data are the first demonstration that wild-type p53 protein binds to a response element within the EpCAM gene and negatively regulates EpCAM expression, and transcriptional repression of EpCAM contributes to p53 control of breast cancer invasion. (PMID:19141643)
- hepatocellular carcinoma growth and invasiveness is dictated by a subset of EpCAM(+) cells (PMID:19150350)
- the overexpression of epithelial cell adhesion molecule and reduced expression of E-cadherin in combination is more significant than a single marker for predicting poor survival. (PMID:19157508)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | epcam | ENSDARG00000040534 |
| mus_musculus | Epcam | ENSMUSG00000045394 |
| rattus_norvegicus | Epcam | ENSRNOG00000015667 |
Paralogs (1): TACSTD2 (ENSG00000184292)
Protein
Protein identifiers
Epithelial cell adhesion molecule — P16422 (reviewed: P16422)
Alternative names: Adenocarcinoma-associated antigen, Cell surface glycoprotein Trop-1, Epithelial cell surface antigen, Epithelial glycoprotein, Epithelial glycoprotein 314, KS 1/4 antigen, KSA, Major gastrointestinal tumor-associated protein GA733-2, Tumor-associated calcium signal transducer 1
All UniProt accessions (3): P16422, B5MCA4, C9JKY3
UniProt curated annotations — full annotation on UniProt →
Function. May act as a physical homophilic interaction molecule between intestinal epithelial cells (IECs) and intraepithelial lymphocytes (IELs) at the mucosal epithelium for providing immunological barrier as a first line of defense against mucosal infection. Plays a role in embryonic stem cells proliferation and differentiation. Up-regulates the expression of FABP5, MYC and cyclins A and E.
Subunit / interactions. Monomer. Interacts with phosphorylated CLDN7.
Subcellular location. Lateral cell membrane. Cell junction. Tight junction.
Tissue specificity. Highly and selectively expressed by undifferentiated rather than differentiated embryonic stem cells (ESC). Levels rapidly diminish as soon as ESC’s differentiate (at protein levels). Expressed in almost all epithelial cell membranes but not on mesodermal or neural cell membranes. Found on the surface of adenocarcinoma.
Post-translational modifications. Hyperglycosylated in carcinoma tissue as compared with autologous normal epithelia. Glycosylation at Asn-198 is crucial for protein stability.
Disease relevance. Diarrhea 5, with tufting enteropathy, congenital (DIAR5) [MIM:613217] An intractable diarrhea of infancy characterized by villous atrophy and absence of inflammation, with intestinal epithelial cell dysplasia manifesting as focal epithelial tufts in the duodenum and jejunum. The disease is caused by variants affecting the gene represented in this entry. Lynch syndrome 8 (LYNCH8) [MIM:613244] A form of Lynch syndrome, an autosomal dominant disease associated with marked increase in cancer susceptibility. It is characterized by a familial predisposition to early-onset colorectal carcinoma (CRC) and extra-colonic tumors of the gastrointestinal, urological and female reproductive tracts. Lynch syndrome is reported to be the most common form of inherited colorectal cancer in the Western world. Clinically, it is often divided into two subgroups. Type I is characterized by hereditary predisposition to colorectal cancer, a young age of onset, and carcinoma observed in the proximal colon. Type II is characterized by increased risk for cancers in certain tissues such as the uterus, ovary, breast, stomach, small intestine, skin, and larynx in addition to the colon. Diagnosis of classical Lynch syndrome is based on the Amsterdam criteria: 3 or more relatives affected by colorectal cancer, one a first degree relative of the other two; 2 or more generation affected; 1 or more colorectal cancers presenting before 50 years of age; exclusion of hereditary polyposis syndromes. The term ‘suspected Lynch syndrome’ or ‘incomplete Lynch syndrome’ can be used to describe families who do not or only partially fulfill the Amsterdam criteria, but in whom a genetic basis for colon cancer is strongly suspected. The disease is caused by variants affecting the gene represented in this entry. LYNCH8 results from heterozygous deletion of 3-prime exons of EPCAM and intergenic regions directly upstream of MSH2, resulting in transcriptional read-through and epigenetic silencing of MSH2 in tissues expressing EPCAM.
Similarity. Belongs to the EPCAM family.
RefSeq proteins (1): NP_002345* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000716 | Thyroglobulin_1 | Domain |
| IPR036857 | Thyroglobulin_1_sf | Homologous_superfamily |
| IPR041630 | EpCAM_N | Domain |
| IPR043406 | EPCAM/Trop-2 | Family |
| IPR049420 | EPCAM-Trop-2_C | Domain |
Pfam: PF00086, PF18635, PF21283
Enzyme classification (BRENDA):
- EC 2.4.1.37 — fucosylgalactoside 3-alpha-galactosyltransferase (BRENDA: 12 organisms, 84 substrates, 31 inhibitors, 90 Km, 49 kcat entries)
- EC 2.4.1.40 — glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase (BRENDA: 12 organisms, 33 substrates, 15 inhibitors, 33 Km, 14 kcat entries)
Substrate kinetics (BRENDA)
48 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| UDP-GALACTOSE | 0.01–4.5 | 17 |
| UDP-ALPHA-D-GALACTOSE | 0.023–0.78 | 11 |
| ALPHA-FUC-(1->2)-BETA-D-GAL-(CH2)7CH3 | 0.088–2.64 | 8 |
| BETA-D-GALACTOSYL-(1->4)-BETA-D-GLUCOSYL-(1<->1) | 0.032–0.35 | 6 |
| L-FUCOSYL-ALPHA-1,2-BETA-D-GALACTOSYL-O(CH2)7CH3 | 0.022–0.281 | 6 |
| ALPHA-FUC-(1->2)-BETA-D-GAL-(CH2)7CH3 | 0.0099–0.4 | 6 |
| UDP-N-ACETYL-ALPHA-D-GALACTOSAMINE | 0.0087–0.086 | 6 |
| UDP-GALNAC | 0.0099–3.74 | 5 |
| L-FUCOSYL-ALPHA-1,2-BETA-GALACTOSYL-O(CH2)7CH3 | 0.027–0.116 | 4 |
| UDP-GLUCOSE | 0.12–0.238 | 4 |
| L-FUCOSYL-ALPHA-1,2-BETA-GALACTOSYL-O(CH2)7CH3 | 0.0087–0.167 | 4 |
| UDP-GALNAC | 0.023–0.78 | 3 |
| UDP-N-ACETYLGALACTOSAMINE | 0.285–0.34 | 3 |
| 2’-FUCOSYLLACTOSE | 0.27–0.47 | 3 |
| 2’-FUCOSYLLACTOSE | 0.08–0.5 | 2 |
UniProt features (47 total): strand 12, sequence variant 7, disulfide bond 6, helix 5, mutagenesis site 3, turn 3, glycosylation site 3, topological domain 2, sequence conflict 2, signal peptide 1, chain 1, transmembrane region 1, domain 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4MZV | X-RAY DIFFRACTION | 1.86 |
| 6I07 | X-RAY DIFFRACTION | 2.35 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P16422-F1 | 87.71 | 0.66 |
Antibody-complex structures (SAbDab): 1 — 6I07
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (6): 29–59, 38–48, 66–99, 110–116, 118–135, 27–46
Glycosylation sites (3): 74, 111, 198
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 74 | changed glycosylation pattern. complete loss of glycosylation and substantial decrease in protein expression; when assoc |
| 111 | changed glycosylation pattern. complete loss of glycosylation and substantial decrease in protein expression; when assoc |
| 198 | decreased glycosylation, reduced protein stability and significant decrease in protein expression. complete loss of glyc |
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-202733 | Cell surface interactions at the vascular wall |
| R-HSA-9638630 | Attachment of bacteria to epithelial cells |
| R-HSA-9927418 | Developmental Lineage of Mammary Gland Luminal Epithelial Cells |
| R-HSA-9927426 | Developmental Lineage of Mammary Gland Alveolar Cells |
| R-HSA-9927432 | Developmental Lineage of Mammary Gland Myoepithelial Cells |
| R-HSA-9938206 | Developmental Lineage of Mammary Stem Cells |
MSigDB gene sets: 480 (showing top):
MODULE_52, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_REGULATION_OF_CELL_CELL_ADHESION_MEDIATED_BY_CADHERIN, AREB6_03, GOCC_CELL_SURFACE, GOBP_NEGATIVE_REGULATION_OF_CELL_CELL_ADHESION, GOBP_KIDNEY_EPITHELIUM_DEVELOPMENT, HUMMERICH_SKIN_CANCER_PROGRESSION_UP, GOBP_STEM_CELL_PROLIFERATION, GOBP_CELL_CELL_ADHESION, MODULE_118, BROWNE_HCMV_INFECTION_24HR_UP, MCBRYAN_PUBERTAL_BREAST_3_4WK_UP, CAFFAREL_RESPONSE_TO_THC_8HR_3_UP, YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_6
GO Biological Process (8): ureteric bud development (GO:0001657), positive regulation of cell population proliferation (GO:0008284), signal transduction involved in regulation of gene expression (GO:0023019), positive regulation of transcription by RNA polymerase II (GO:0045944), stem cell differentiation (GO:0048863), negative regulation of cell-cell adhesion mediated by cadherin (GO:2000048), positive regulation of stem cell proliferation (GO:2000648), cell-cell adhesion (GO:0098609)
GO Molecular Function (3): protein-containing complex binding (GO:0044877), cadherin binding involved in cell-cell adhesion (GO:0098641), protein binding (GO:0005515)
GO Cellular Component (9): plasma membrane (GO:0005886), bicellular tight junction (GO:0005923), cell surface (GO:0009986), basolateral plasma membrane (GO:0016323), apical plasma membrane (GO:0016324), lateral plasma membrane (GO:0016328), extracellular exosome (GO:0070062), membrane (GO:0016020), anchoring junction (GO:0070161)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Developmental Lineages of the Mammary Gland | 4 |
| Hemostasis | 1 |
| Biofilm formation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| binding | 2 |
| plasma membrane region | 2 |
| mesonephric tubule development | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| positive regulation of cellular process | 1 |
| signal transduction | 1 |
| regulation of gene expression | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| positive regulation of DNA-templated transcription | 1 |
| cell differentiation | 1 |
| negative regulation of cell-cell adhesion | 1 |
| cell-cell adhesion mediated by cadherin | 1 |
| regulation of cell-cell adhesion mediated by cadherin | 1 |
| positive regulation of cell population proliferation | 1 |
| stem cell proliferation | 1 |
| regulation of stem cell proliferation | 1 |
| cell adhesion | 1 |
| cadherin binding | 1 |
| cell-cell adhesion | 1 |
| cell-cell adhesion mediator activity | 1 |
| membrane | 1 |
| cell periphery | 1 |
| apical junction complex | 1 |
| tight junction | 1 |
| basal plasma membrane | 1 |
| apical part of cell | 1 |
| plasma membrane | 1 |
| extracellular vesicle | 1 |
| cell junction | 1 |
Protein interactions and networks
STRING
3270 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EPCAM | CLDN7 | O95471 | 984 |
| EPCAM | CD44 | P16070 | 971 |
| EPCAM | CD9 | P21926 | 941 |
| EPCAM | ERBB2 | P04626 | 921 |
| EPCAM | EGFR | P00533 | 920 |
| EPCAM | MUC1 | P13931 | 913 |
| EPCAM | MSH2 | P43246 | 912 |
| EPCAM | CD24 | P25063 | 883 |
| EPCAM | MSH6 | P52701 | 873 |
| EPCAM | PMS2 | P54278 | 864 |
| EPCAM | PROM1 | O43490 | 840 |
| EPCAM | PTPRC | P08575 | 840 |
| EPCAM | CDH1 | P12830 | 838 |
| EPCAM | MLH1 | P40692 | 837 |
| EPCAM | GPC1 | P35052 | 822 |
IntAct
44 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| SLC39A5 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.640 |
| CLDN7 | TACSTD2 | psi-mi:“MI:0914”(association) | 0.570 |
| CALR | EPCAM | psi-mi:“MI:0915”(physical association) | 0.560 |
| EPCAM | CDH1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DLST | EPCAM | psi-mi:“MI:0915”(physical association) | 0.560 |
| CDK5R1 | EPCAM | psi-mi:“MI:0915”(physical association) | 0.560 |
| EPCAM | NEK7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EPCAM | bipA | psi-mi:“MI:0915”(physical association) | 0.370 |
| CFTR | psi-mi:“MI:0914”(association) | 0.350 | |
| PLEKHA7 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| DUSP4 | MYO1C | psi-mi:“MI:0914”(association) | 0.350 |
| RAB5A | EIF3CL | psi-mi:“MI:0914”(association) | 0.350 |
| SHTN1 | psi-mi:“MI:0914”(association) | 0.350 | |
| FGFR1 | NDUFA4 | psi-mi:“MI:0914”(association) | 0.350 |
| FGFR4 | NDUFA4 | psi-mi:“MI:0914”(association) | 0.350 |
| NTRK3 | ILVBL | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (45): EPCAM (Affinity Capture-Western), EPCAM (Affinity Capture-MS), EPCAM (Two-hybrid), EPCAM (Affinity Capture-MS), EPCAM (Two-hybrid), EPCAM (Affinity Capture-MS), EPCAM (Affinity Capture-MS), EPCAM (Affinity Capture-MS), EPCAM (Affinity Capture-MS), EPCAM (Affinity Capture-MS), EPCAM (Co-purification), EPCAM (Affinity Capture-MS), EPCAM (Affinity Capture-MS), EPCAM (Affinity Capture-MS), EPCAM (Proximity Label-MS)
ESM2 similar proteins: A0A182IRF8, A0A1D0C0W1, A0A1S4GYH9, A0A1S4GYJ6, A0A1S4K3K8, A0NAZ8, A0NBD9, A5X2H7, A9LKE4, A9LKE6, A9LKF0, A9LKF6, B0X6Z1, B6DDQ8, L0MZ37, M1JMQ7, P0CJ08, P0DQE4, P16422, P18153, P34174, P35775, P35776, P54194, Q06K46, Q06KA2, Q06KA5, Q0IF93, Q1WER1, Q5ENZ6, Q5ENZ7, Q5EP01, Q5EP17, Q5MIW7, Q5TXN1, Q6TS00, Q7PF80, Q7PJ76, Q7PN86, Q7PNF2
Diamond homologs: O55159, P09758, P16422, Q1WER1, Q3T0L5, Q5F381, Q6P9Z6, Q75QW1, Q8BGV3, Q99JW5
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| NfKb-p65/p50 | “down-regulates quantity by repression” | EPCAM | “transcriptional regulation” |
| CBP/p300 | “up-regulates quantity by expression” | EPCAM | “transcriptional regulation” |
| ZEB1 | “down-regulates quantity by repression” | EPCAM | “transcriptional regulation” |
Disease & clinical
Cancer significance
Clinical variants and AI predictions
ClinVar
1103 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 122 |
| Likely pathogenic | 17 |
| Uncertain significance | 573 |
| Likely benign | 295 |
| Benign | 49 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1049167 | NM_002354.3(EPCAM):c.556-3_657+288del | Pathogenic |
| 1050058 | NM_002354.3(EPCAM):c.859-2_903+43del | Pathogenic |
| 1070268 | NC_000002.11:g.(?47604143)(47613752_?)del | Pathogenic |
| 1071367 | NC_000002.11:g.(?47596639)(47705664_?)del | Pathogenic |
| 1073180 | NC_000002.11:g.(?47596645)(47693957_?)del | Pathogenic |
| 1075374 | NC_000002.11:g.(?47596635)(47639709_?)del | Pathogenic |
| 1076143 | NC_000002.11:g.(?47600592)(47613752_?)del | Pathogenic |
| 1244227 | NM_002354.3(EPCAM):c.903+1G>A | Pathogenic |
| 12771 | NM_002354.3(EPCAM):c.491+1G>A | Pathogenic |
| 12773 | NM_002354.3(EPCAM):c.197G>A (p.Cys66Tyr) | Pathogenic |
| 12774 | NM_002354.3(EPCAM):c.499dup (p.Gln167fs) | Pathogenic |
| 12775 | NC_000002.12:g.47383704_47388612del | Pathogenic |
| 12776 | NR_030286.1(MIR559):n.278_23134del | Pathogenic |
| 1322824 | NM_002354.3(EPCAM):c.160C>T (p.Gln54Ter) | Pathogenic |
| 1359152 | NC_000002.11:g.(?47596645)(47607118_?)del | Pathogenic |
| 1411908 | NC_000002.11:g.(?47596645)(47604226_?)del | Pathogenic |
| 1442833 | NC_000002.11:g.(?47602363)(47602448_?)del | Pathogenic |
| 1455569 | NC_000002.11:g.(?47596645)(47602448_?)del | Pathogenic |
| 1458036 | NC_000002.11:g.(?47600592)(47604226_?)del | Pathogenic |
| 1459780 | NC_000002.11:g.(?47596645)(47672806_?)del | Pathogenic |
| 1459802 | NC_000002.11:g.(?47612824)(47615711_?)del | Pathogenic |
| 1460466 | NC_000002.11:g.(?47613701)(47613752_?)del | Pathogenic |
| 157604 | NM_002354.3(EPCAM):c.492-2A>G | Pathogenic |
| 1801570 | NM_002354.3(EPCAM):c.315dup (p.Lys106Ter) | Pathogenic |
| 1801600 | NM_002354.3(EPCAM):c.11del (p.Pro4fs) | Pathogenic |
| 1801614 | NM_002354.3(EPCAM):c.37del (p.Ala14fs) | Pathogenic |
| 1801615 | NM_002354.3(EPCAM):c.87_88del (p.Cys29_Glu30delinsTer) | Pathogenic |
| 1801616 | NM_002354.3(EPCAM):c.167del (p.Thr56fs) | Pathogenic |
| 1801668 | NM_002354.3(EPCAM):c.3G>C (p.Met1Ile) | Pathogenic |
| 1801674 | NM_002354.3(EPCAM):c.373A>T (p.Arg125Ter) | Pathogenic |
SpliceAI
1447 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:47373457:TTCTA:T | acceptor_loss | 1.0000 |
| 2:47373458:TCTA:T | acceptor_loss | 1.0000 |
| 2:47373461:A:AG | acceptor_gain | 1.0000 |
| 2:47373461:A:C | acceptor_loss | 1.0000 |
| 2:47373461:AGAAT:A | acceptor_gain | 1.0000 |
| 2:47373462:G:A | acceptor_loss | 1.0000 |
| 2:47373462:G:GT | acceptor_gain | 1.0000 |
| 2:47373462:GA:G | acceptor_gain | 1.0000 |
| 2:47373462:GAA:G | acceptor_gain | 1.0000 |
| 2:47373462:GAAT:G | acceptor_gain | 1.0000 |
| 2:47373462:GAATG:G | acceptor_gain | 1.0000 |
| 2:47373566:AAAGC:A | donor_gain | 1.0000 |
| 2:47373567:AAGC:A | donor_gain | 1.0000 |
| 2:47373568:AGCG:A | donor_loss | 1.0000 |
| 2:47373569:GC:G | donor_gain | 1.0000 |
| 2:47373570:CGTG:C | donor_loss | 1.0000 |
| 2:47373571:G:C | donor_loss | 1.0000 |
| 2:47373571:G:GG | donor_gain | 1.0000 |
| 2:47373572:T:A | donor_loss | 1.0000 |
| 2:47373574:A:AT | donor_loss | 1.0000 |
| 2:47373575:G:C | donor_loss | 1.0000 |
| 2:47374046:CTA:C | donor_gain | 1.0000 |
| 2:47374049:G:GG | donor_gain | 1.0000 |
| 2:47375232:A:AG | acceptor_gain | 1.0000 |
| 2:47375233:G:GG | acceptor_gain | 1.0000 |
| 2:47375297:GAC:G | donor_gain | 1.0000 |
| 2:47375300:G:GG | donor_gain | 1.0000 |
| 2:47378949:CCAG:C | acceptor_loss | 1.0000 |
| 2:47378950:CAG:C | acceptor_loss | 1.0000 |
| 2:47378951:A:AG | acceptor_gain | 1.0000 |
AlphaMissense
2073 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:47373918:T:A | C99S | 0.998 |
| 2:47373919:G:C | C99S | 0.998 |
| 2:47373975:T:A | C118S | 0.998 |
| 2:47373976:G:C | C118S | 0.998 |
| 2:47373983:C:A | N120K | 0.998 |
| 2:47373983:C:G | N120K | 0.998 |
| 2:47373819:T:A | C66S | 0.997 |
| 2:47373819:T:C | C66R | 0.997 |
| 2:47373820:G:C | C66S | 0.997 |
| 2:47373936:T:C | F105L | 0.997 |
| 2:47373938:T:A | F105L | 0.997 |
| 2:47373938:T:G | F105L | 0.997 |
| 2:47373972:T:A | W117R | 0.997 |
| 2:47373972:T:C | W117R | 0.997 |
| 2:47373975:T:C | C118R | 0.997 |
| 2:47373977:T:G | C118W | 0.997 |
| 2:47373990:G:T | G123W | 0.997 |
| 2:47374028:C:G | C135W | 0.997 |
| 2:47378981:T:C | L195P | 0.997 |
| 2:47373821:T:G | C66W | 0.996 |
| 2:47373937:T:G | F105C | 0.996 |
| 2:47373974:G:C | W117C | 0.996 |
| 2:47373974:G:T | W117C | 0.996 |
| 2:47373991:G:A | G123E | 0.996 |
| 2:47374026:T:A | C135S | 0.996 |
| 2:47374026:T:C | C135R | 0.996 |
| 2:47374027:G:A | C135Y | 0.996 |
| 2:47374027:G:C | C135S | 0.996 |
| 2:47375251:T:C | L148P | 0.996 |
| 2:47379944:C:A | A278E | 0.996 |
dbSNP variants (sampled 300 via entrez): RS1000041924 (2:47382245 A>G), RS1000140374 (2:47382690 A>C,G), RS1000151428 (2:47387432 G>A,C), RS1000226715 (2:47370516 C>G), RS1000227825 (2:47384733 G>A), RS1000451548 (2:47386248 A>G,T), RS1000530194 (2:47369489 C>T), RS1000598521 (2:47370304 C>T), RS1000739398 (2:47381642 C>T), RS1000803828 (2:47380526 A>G), RS1000898513 (2:47376947 A>C,G,T), RS1000921673 (2:47376715 A>G), RS1000967615 (2:47369363 C>A,G,T), RS1000971952 (2:47382441 C>T), RS1001092284 (2:47372652 G>A,T)
Disease associations
OMIM: gene MIM:185535 | disease phenotypes: MIM:167000, MIM:613244, MIM:613659, MIM:613217, MIM:120435, MIM:114480
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| congenital diarrhea 5 with tufting enteropathy | Definitive | Autosomal recessive |
| Lynch syndrome 8 | Definitive | Autosomal dominant |
| Lynch syndrome | Definitive | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Lynch syndrome | Definitive | AD |
| hereditary breast carcinoma | Refuted | AD |
Mondo (12): hereditary neoplastic syndrome (MONDO:0015356), ovarian cancer (MONDO:0008170), colon carcinoma (MONDO:0002032), Lynch syndrome 8 (MONDO:0013196), colonic neoplasm (MONDO:0005401), gastric cancer (MONDO:0001056), congenital diarrhea 5 with tufting enteropathy (MONDO:0013184), Lynch syndrome (MONDO:0005835), Lynch syndrome 1 (MONDO:0007356), hereditary breast carcinoma (MONDO:0016419), hereditary nonpolyposis colon cancer (MONDO:0018630), hereditary breast ovarian cancer syndrome (MONDO:0003582)
Orphanet (7): Inherited cancer-predisposing syndrome (Orphanet:140162), Rare ovarian cancer (Orphanet:213500), Lynch syndrome (Orphanet:144), Congenital tufting enteropathy (Orphanet:92050), Hereditary breast cancer (Orphanet:227535), Hereditary nonpolyposis colon cancer (Orphanet:443909), Hereditary breast and/or ovarian cancer syndrome (Orphanet:145)
HPO phenotypes
97 total (30 of 97 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000202 | Orofacial cleft |
| HP:0000453 | Choanal atresia |
| HP:0000505 | Visual impairment |
| HP:0000518 | Cataract |
| HP:0000588 | Optic disc coloboma |
| HP:0000613 | Photophobia |
| HP:0000708 | Atypical behavior |
| HP:0000716 | Depression |
| HP:0000737 | Irritability |
| HP:0000738 | Hallucinations |
| HP:0000739 | Anxiety |
| HP:0000951 | Abnormality of the skin |
| HP:0001123 | Visual field defect |
| HP:0001250 | Seizure |
| HP:0001252 | Hypotonia |
| HP:0001260 | Dysarthria |
| HP:0001276 | Hypertonia |
| HP:0001288 | Gait disturbance |
| HP:0001369 | Arthritis |
| HP:0001371 | Flexion contracture |
| HP:0001402 | Hepatocellular carcinoma |
| HP:0001508 | Failure to thrive |
| HP:0001518 | Small for gestational age |
| HP:0001522 | Death in infancy |
| HP:0001824 | Weight loss |
| HP:0001944 | Dehydration |
| HP:0002013 | Vomiting |
| HP:0002017 | Nausea and vomiting |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST009568_1 | epithelial cell adhesion molecule levels | 7.000000e-16 |
| GCST90026413_12 | Severe insulin-deficient type 2 diabetes | 2.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0010574 | epithelial cell adhesion molecule measurement |
MeSH disease descriptors (8)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D003110 | Colonic Neoplasms | C04.588.274.476.411.307.180; C06.301.371.411.307.180; C06.405.249.411.307.180; C06.405.469.158.356.180; C06.405.469.491.307.180 |
| D061325 | Hereditary Breast and Ovarian Cancer Syndrome | C04.588.180.483; C04.588.322.455.431; C04.700.517; C12.050.351.500.056.630.705.431; C12.050.351.937.418.685.431; C12.100.250.056.630.705.431; C12.900.418.685.431; C16.320.700.517; C17.800.090.500.483; C19.344.410.431; C19.391.630.705.431 |
| D009386 | Neoplastic Syndromes, Hereditary | C04.700; C16.320.700 |
| D010051 | Ovarian Neoplasms | C04.588.322.455; C12.050.351.500.056.630.705; C12.050.351.937.418.685; C12.100.250.056.630.705; C12.900.418.685; C19.344.410; C19.391.630.705 |
| C562840 | Breast Cancer, Familial (supp.) | |
| C567685 | Colorectal Cancer, Hereditary Nonpolyposis, Type 8 (supp.) | |
| C567703 | Diarrhea 5, With Tufting Enteropathy, Congenital (supp.) | |
| C537261 | Lynch syndrome I (site-specific colonic cancer) (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3580493 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.33 | Kd | 0.472 | nM | CHEMBL5653589 |
| 9.33 | ED50 | 0.472 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148324: Binding affinity to human EPCAM incubated for 45 mins by Kinobead based pull down assay | kd | 0.0005 | uM |
CTD chemical–gene interactions
81 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression, decreases expression, increases methylation | 6 |
| methylmercuric chloride | decreases expression, increases expression, affects cotreatment | 4 |
| sodium arsenite | affects reaction, increases expression, increases reaction, decreases reaction, decreases expression | 4 |
| bisphenol A | decreases expression, increases expression | 3 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | increases expression, affects cotreatment, decreases expression | 3 |
| Tretinoin | affects expression, decreases expression, increases expression | 3 |
| Paclitaxel | affects cotreatment, increases expression, decreases expression | 3 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| entinostat | increases expression, affects cotreatment | 2 |
| Decitabine | affects expression, affects methylation | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Cisplatin | affects cotreatment, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance | 2 |
| p-Chloromercuribenzoic Acid | affects cotreatment, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| napabucasin | decreases expression | 1 |
| XMU-MP-1 | decreases expression, decreases reaction | 1 |
| dicrotophos | decreases expression | 1 |
| lead acetate | decreases expression | 1 |
| methylparaben | decreases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| potassium chromate(VI) | increases expression | 1 |
| ferrous chloride | increases expression | 1 |
| cupric chloride | decreases expression | 1 |
| nickel sulfate | decreases expression | 1 |
| artemisinin | decreases expression | 1 |
| 3-hydroxyflavone | decreases expression | 1 |
| casticin | decreases expression, increases reaction, decreases reaction | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5651366 | Binding | Binding affinity to human EPCAM incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
8 cell lines: 4 cancer cell line, 2 spontaneously immortalized cell line, 1 finite cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1C4 | Abcam A-431 EPCAM KO | Cancer cell line | Female |
| CVCL_B3ZD | WG4190 | Finite cell line | Male |
| CVCL_D2TL | CHO/EpCAM | Spontaneously immortalized cell line | Female |
| CVCL_D8KV | Ubigene HCT 116 EPCAM KO | Cancer cell line | Male |
| CVCL_E0ZT | Ubigene NCI-H292 EPCAM KO | Cancer cell line | Female |
| CVCL_E6Q8 | Genomeditech CHO-K1 H_EPCAM | Spontaneously immortalized cell line | Female |
| CVCL_E8GZ | CT26-hEpCam-LZ | Cancer cell line | Female |
| CVCL_UE39 | 293T human Epcam | Transformed cell line | Female |
Clinical trials (associated diseases)
401 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00190697 | PHASE4 | COMPLETED | A Study of LY353381 (Arzoxifene) for Patients Who Benefitted From This Drug in Other Oncology Trials and Wished to Continue Treatment |
| NCT00277160 | PHASE4 | COMPLETED | A Study of Primary Prophylaxis With Neulasta (Pegfilgrastim) Versus Secondary Prophylaxis After Chemotherapy in Elderly Subjects (>/= 65 Years Old) With Cancer |
| NCT00727961 | PHASE4 | COMPLETED | A Study to Evaluate Efficacy and Tolerance of Caelyx in Patients With Epithelial Ovarian Cancer. (Study P04072)(COMPLETED) |
| NCT00740116 | PHASE4 | COMPLETED | Tranexamic Acid in Surgery of Advanced Ovarian Cancer |
| NCT00817479 | PHASE4 | COMPLETED | Tumor Gene Expression in Women With Ovarian Cancer |
| NCT01432015 | PHASE4 | COMPLETED | Fosaprepitant Versus Aprepitant in the Prevention of Chemotherapy Induced Nausea and Vomiting |
| NCT01706120 | PHASE4 | UNKNOWN | Study of Clinical and Biological Prognostic Factors in Patients With Ovarian Cancer Receiving Carboplatin +Paclitaxel With Bevacizumab |
| NCT01932125 | PHASE4 | COMPLETED | An Interventional Study of Avastin (Bevacizumab) in Patients With Advanced/Metastatic Epithelial Ovarian Cancer, Fallopian Tube Cancer or Primary Peritoneal Cancer |
| NCT01953107 | PHASE4 | COMPLETED | Oral Iron vs. Placebo in Newly Diagnosed Gynecologic Oncology Patients Who Are Surgical Candidates. |
| NCT02035345 | PHASE4 | TERMINATED | Slowed Carboplatin Infusion for Ovarian Cancer Patients Receiving Carboplatin Re-Treatment |
| NCT02243059 | PHASE4 | WITHDRAWN | Magnetic Resonance Imaging for Lymph Node Staging in Ovarian Cancer |
| NCT03164980 | PHASE4 | TERMINATED | QoL-Comparison Between Trabectedin/PLD and Pt-based Therapy in Patients With Pt-sensitive Recurrent Ovarian Cancer |
| NCT03384511 | PHASE4 | COMPLETED | The Use of 18F-ALF-NOTA-PRGD2 PET/CT Scan to Predict the Efficacy and Adverse Events of Apatinib in Malignancies. |
| NCT03543462 | PHASE4 | COMPLETED | Diaphragmatic Resection And Gynecological Ovarian Neoplasm |
| NCT03752216 | PHASE4 | COMPLETED | NIraparib and Quality of LifE is a Longitudinal Study Evaluating in Real Life the Tolerability of Niraparib. |
| NCT03858166 | PHASE4 | TERMINATED | Efficacy and Safety of PEG-rhG-CSF Secondary Prophylaxis vs. Therapeutic Administration in Patients With Ovarian Cancer |
| NCT04024254 | PHASE4 | COMPLETED | A Study of Serum Folate Levels in Patients Treated With Olaparib |
| NCT04330040 | PHASE4 | COMPLETED | Prospective Multicentre Phase-IV Clinical Trial of Olaparib in Indian Patients With Ovarian and Metastatic Breast Cancer |
| NCT04352439 | PHASE4 | COMPLETED | Aspirin for Prevention of Venous Thromboembolism Among Ovarian Cancer Patients Receiving Neoadjuvant Chemotherapy |
| NCT05187208 | PHASE4 | UNKNOWN | PARP Inhibitor Oral Maintenance in Low-Risk Ovarian Cancer |
| NCT05606692 | PHASE4 | RECRUITING | Influences of Propofol and Sevoflurane Anesthesia in Ovarian Cancer (Anesthetics) |
| NCT05926336 | PHASE4 | RECRUITING | The Effects of Using Different Anesthetics on the Prognosis of Primary Tumors and Its Mechanism of Action |
| NCT06412120 | PHASE4 | RECRUITING | Study Evaluating Safety, Tolerability, and Metabolism of Niraparib |
| NCT06871787 | PHASE4 | NOT_YET_RECRUITING | Near-Infrared Fluorescence Imaging With Indocyanine Green to Evaluate Bowel Anastomoses in Gynecologic Oncology Surgery |
| NCT06887933 | PHASE4 | NOT_YET_RECRUITING | A Trial to Evaluate the Safety of Niraparib Tablets in Adult Female Participants With Advanced or Relapsed Epithelial Ovarian Cancer |
| NCT07469202 | PHASE4 | NOT_YET_RECRUITING | CYTALUX Dose Extension Study |
| NCT00566644 | PHASE3 | TERMINATED | Intrauterine Levonorgestrel and Observation or Observation Alone in Preventing Atypical Endometrial Hyperplasia and Endometrial Cancer in Women With Hereditary Non-Polyposis Colorectal Cancer or Lynch Syndrome |
| NCT02000089 | PHASE3 | RECRUITING | The Cancer of the Pancreas Screening-5 CAPS5)Study |
| NCT02813824 | PHASE3 | ACTIVE_NOT_RECRUITING | Effect of Chemoprevention by Low-dose Aspirin of New or Recurrent Colorectal Adenomas in Patients With Lynch Syndrome |
| NCT02912559 | PHASE3 | ACTIVE_NOT_RECRUITING | Combination Chemotherapy With or Without Atezolizumab in Treating Patients With Stage III Colon Cancer and Deficient DNA Mismatch Repair |
| NCT04711434 | PHASE3 | UNKNOWN | PD-1 Antibody for The Prevention of Adenomatous Polyps and Second Primary Tumors in Lynch Syndrome Patients |
| NCT07609901 | PHASE3 | NOT_YET_RECRUITING | Preventive Dendritic Cell Vaccination for Lynch Syndrome Carriers |
| NCT00001806 | PHASE3 | COMPLETED | Methods in Education for Breast Cancer Genetics |
| NCT00002477 | PHASE3 | UNKNOWN | Adjuvant Chemotherapy Compared With Observation in Treating Patients With Resected Early Stage Ovarian Epithelial Cancer |
| NCT00002568 | PHASE3 | COMPLETED | Combination Chemotherapy With or Without Surgery in Treating Patients With Stage III Ovarian Epithelial Cancer |
| NCT00002641 | PHASE3 | COMPLETED | Surgery With or Without Chemotherapy in Treating Patients With Soft Tissue Sarcoma |
| NCT00002717 | PHASE3 | COMPLETED | Paclitaxel and Cisplatin in Treating Patients With Stage III or Stage IV Ovarian Cancer or Primary Peritoneal Cancer |
| NCT00002764 | PHASE3 | COMPLETED | Surgery With or Without Combination Chemotherapy in Treating Patients With Lung Metastases From Soft Tissue Sarcoma |
| NCT00002819 | PHASE3 | TERMINATED | Chemotherapy With or Without Peripheral Stem Cell Transplantation in Treating Patients With Persistent Ovarian Epithelial Cancer |
| NCT00002894 | PHASE3 | COMPLETED | Platinum-based Chemotherapy With or Without Paclitaxel in Treating Patients With Relapsed Ovarian Cancer |
Related Atlas pages
- Associated diseases: congenital diarrhea 5 with tufting enteropathy, Lynch syndrome 8, Lynch syndrome, hereditary breast carcinoma
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): colon carcinoma, colonic neoplasm, congenital diarrhea 5 with tufting enteropathy, gastric cancer, hereditary breast carcinoma, hereditary breast ovarian cancer syndrome, hereditary neoplastic syndrome, hereditary nonpolyposis colon cancer, Lynch syndrome, Lynch syndrome 1, Lynch syndrome 8, ovarian cancer, type 2 diabetes mellitus