EPHA10
gene geneOn this page
Also known as FLJ16103FLJ33655
Summary
EPHA10 (EPH receptor A10, HGNC:19987) is a protein-coding gene on chromosome 1p34.3, encoding Ephrin type-A receptor 10 (Q5JZY3). Receptor for members of the ephrin-A family.
Ephrin receptors, the largest subfamily of receptor tyrosine kinases (RTKs), and their ephrin ligands are important mediators of cell-cell communication regulating cell attachment, shape, and mobility in neuronal and epithelial cells (Aasheim et al., 2005 [PubMed 15777695]). See MIM 179610 for additional background on Eph receptors and ephrins.
Source: NCBI Gene 284656 — RefSeq curated summary.
At a glance
- Gene–disease (curated): hearing loss, autosomal dominant 88 (Limited, GenCC) — +1 more curated relationship
- GWAS associations: 2
- Clinical variants (ClinVar): 205 total — 1 pathogenic
- Phenotypes (HPO): 3
- Druggable target: yes
- MANE Select transcript:
NM_001099439
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:19987 |
| Approved symbol | EPHA10 |
| Name | EPH receptor A10 |
| Location | 1p34.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ16103, FLJ33655 |
| Ensembl gene | ENSG00000183317 |
| Ensembl biotype | protein_coding |
| OMIM | 611123 |
| Entrez | 284656 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 4 nonsense_mediated_decay, 3 protein_coding, 2 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000319637, ENST00000373048, ENST00000427468, ENST00000432874, ENST00000437645, ENST00000444950, ENST00000446149, ENST00000453577, ENST00000525749, ENST00000534097
RefSeq mRNA: 2 — MANE Select: NM_001099439
NM_001099439, NM_173641
CCDS: CCDS41305, CCDS425
Canonical transcript exons
ENST00000373048 — 17 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001459406 | 37752876 | 37753226 |
| ENSE00001459407 | 37754215 | 37754370 |
| ENSE00001459408 | 37761405 | 37762083 |
| ENSE00001776249 | 37715976 | 37718486 |
| ENSE00002051945 | 37762785 | 37762849 |
| ENSE00003477597 | 37721660 | 37721845 |
| ENSE00003515096 | 37731411 | 37731582 |
| ENSE00003528058 | 37720351 | 37720554 |
| ENSE00003573684 | 37735257 | 37735390 |
| ENSE00003577320 | 37727102 | 37727210 |
| ENSE00003590293 | 37718661 | 37718816 |
| ENSE00003619271 | 37723311 | 37723372 |
| ENSE00003630484 | 37719909 | 37720058 |
| ENSE00003639548 | 37720783 | 37720844 |
| ENSE00003648762 | 37723041 | 37723166 |
| ENSE00003669162 | 37719414 | 37719607 |
| ENSE00003844082 | 37764961 | 37765120 |
Expression profiles
Bgee: expression breadth ubiquitous, 166 present calls, max score 96.11.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.4161 / max 57.4145, expressed in 99 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 11801 | 0.3271 | 89 |
| 11796 | 0.0380 | 11 |
| 11795 | 0.0301 | 7 |
| 11797 | 0.0209 | 7 |
Top tissues by expression
244 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| sperm | CL:0000019 | 96.11 | silver quality |
| mucosa of transverse colon | UBERON:0004991 | 91.36 | gold quality |
| left testis | UBERON:0004533 | 90.42 | gold quality |
| right testis | UBERON:0004534 | 89.65 | gold quality |
| testis | UBERON:0000473 | 86.74 | gold quality |
| transverse colon | UBERON:0001157 | 86.10 | gold quality |
| rectum | UBERON:0001052 | 85.41 | gold quality |
| ileal mucosa | UBERON:0000331 | 82.84 | gold quality |
| right frontal lobe | UBERON:0002810 | 81.78 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 81.26 | gold quality |
| nucleus accumbens | UBERON:0001882 | 81.07 | gold quality |
| colonic epithelium | UBERON:0000397 | 81.03 | gold quality |
| pituitary gland | UBERON:0000007 | 80.57 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 80.10 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 79.97 | gold quality |
| prefrontal cortex | UBERON:0000451 | 79.38 | gold quality |
| oocyte | CL:0000023 | 79.14 | gold quality |
| adenohypophysis | UBERON:0002196 | 78.99 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 78.76 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 78.72 | gold quality |
| frontal cortex | UBERON:0001870 | 77.89 | gold quality |
| secondary oocyte | CL:0000655 | 77.45 | gold quality |
| neocortex | UBERON:0001950 | 77.43 | gold quality |
| hypothalamus | UBERON:0001898 | 77.30 | gold quality |
| small intestine | UBERON:0002108 | 77.22 | gold quality |
| caudate nucleus | UBERON:0001873 | 77.01 | gold quality |
| cortical plate | UBERON:0005343 | 76.30 | gold quality |
| putamen | UBERON:0001874 | 75.74 | gold quality |
| forebrain | UBERON:0001890 | 75.72 | gold quality |
| cerebral cortex | UBERON:0000956 | 75.53 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.20 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
42 targeting EPHA10, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-4745-5P | 99.98 | 65.95 | 1028 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
| HSA-MIR-4493 | 99.90 | 66.48 | 977 |
| HSA-MIR-3681-3P | 99.88 | 70.46 | 2254 |
| HSA-MIR-3941 | 99.86 | 70.54 | 2735 |
| HSA-MIR-6875-3P | 99.82 | 70.26 | 2983 |
| HSA-MIR-6817-3P | 99.79 | 68.35 | 2126 |
| HSA-MIR-4679 | 99.76 | 69.19 | 1229 |
| HSA-MIR-1827 | 99.63 | 68.57 | 3265 |
| HSA-MIR-4649-3P | 99.56 | 66.90 | 1783 |
| HSA-MIR-766-3P | 99.47 | 65.24 | 1811 |
| HSA-MIR-6080 | 99.43 | 69.43 | 373 |
| HSA-MIR-4293 | 99.22 | 65.46 | 1263 |
| HSA-MIR-452-3P | 99.01 | 66.25 | 1241 |
| HSA-MIR-12114 | 98.70 | 63.45 | 730 |
| HSA-MIR-4768-3P | 98.16 | 66.02 | 2330 |
| HSA-MIR-338-3P | 98.14 | 67.38 | 1137 |
| HSA-MIR-4659A-5P | 98.03 | 66.42 | 819 |
| HSA-MIR-4659B-5P | 98.03 | 66.84 | 979 |
| HSA-MIR-4433A-3P | 97.75 | 62.82 | 1435 |
| HSA-MIR-4723-3P | 97.67 | 65.91 | 1017 |
| HSA-MIR-4676-5P | 97.54 | 65.29 | 715 |
| HSA-MIR-575 | 97.54 | 65.18 | 718 |
| HSA-MIR-6865-3P | 97.54 | 64.67 | 684 |
| HSA-MIR-6791-3P | 97.45 | 64.31 | 1123 |
| HSA-MIR-6829-3P | 97.45 | 64.31 | 1137 |
Literature-anchored findings (GeneRIF, showing 12)
- CLL B-cells showed a more heterogeneous Eph/EFN profile, specially EFNA4, EphB6 and EphA10. (PMID:18819711)
- EPHA10 does not interact with EPHB6 in breast neoplasms (PMID:21737611)
- EphA10 expression at both the gene and protein level in clinical breast cancer tissues is significantly associated with lymph node metastasis as well as stage progression. (PMID:24403271)
- Therefore, the idea was conceived that the overexpression of EphA10 in prostate cancers might have a potential as a target for prostate cancer therapy, and formed the basis for the studies reported here. (PMID:24924629)
- Ephrin receptor A10 is a promising drug target potentially useful for breast cancers including triple negative breast cancers (PMID:24946238)
- We have demonstrated the physical association and cellular co-localization of EPHA7 and EPHA10 in breast carcinoma cells. The nuclear co-localization of these two receptors in invasive MDA-MB-231 cells suggests their involvement in transcriptional activation of genes involved in invasiveness. (PMID:27566654)
- we defined the novel interaction via expression patterns of EphA10s and EphA10 that promote malignant transformation of breast cancer, and demonstrated the potential benefit in clinical usage. (PMID:28427223)
- Cataloguing the dead: breathing new life into pseudokinase research. (PMID:32053275)
- Ephrin A4-ephrin receptor A10 signaling promotes cell migration and spheroid formation by upregulating NANOG expression in oral squamous cell carcinoma cells. (PMID:33436772)
- Coexpression of EphA10 and Gli3 promotes breast cancer cell proliferation, invasion and migration. (PMID:33990369)
- EphA10 drives tumor progression and immune evasion by regulating the MAPK/ERK cascade in lung adenocarcinoma. (PMID:35839564)
- A non-coding variant in 5’ untranslated region drove up-regulation of pseudo-kinase EPHA10 and caused non-syndromic hearing loss in humans. (PMID:36048850)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Epha10 | ENSMUSG00000028876 |
| rattus_norvegicus | Epha10 | ENSRNOG00000037340 |
Paralogs (53): INSRR (ENSG00000027644), MUSK (ENSG00000030304), FLT4 (ENSG00000037280), EPHA3 (ENSG00000044524), ROS1 (ENSG00000047936), LTK (ENSG00000062524), ERBB3 (ENSG00000065361), TIE1 (ENSG00000066056), FGFR2 (ENSG00000066468), FGFR3 (ENSG00000068078), EPHA8 (ENSG00000070886), FGFR1 (ENSG00000077782), EPHA6 (ENSG00000080224), TYRO3 (ENSG00000092445), FLT1 (ENSG00000102755), MET (ENSG00000105976), EPHB6 (ENSG00000106123), PDGFRB (ENSG00000113721), EPHA4 (ENSG00000116106), TEK (ENSG00000120156), FLT3 (ENSG00000122025), KDR (ENSG00000128052), EPHB2 (ENSG00000133216), PDGFRA (ENSG00000134853), EPHA7 (ENSG00000135333), IGF1R (ENSG00000140443), NTRK3 (ENSG00000140538), ERBB2 (ENSG00000141736), EPHA2 (ENSG00000142627), EPHA5 (ENSG00000145242), EGFR (ENSG00000146648), EPHA1 (ENSG00000146904), NTRK2 (ENSG00000148053), MERTK (ENSG00000153208), EPHB1 (ENSG00000154928), KIT (ENSG00000157404), FGFR4 (ENSG00000160867), DDR2 (ENSG00000162733), RYK (ENSG00000163785), MST1R (ENSG00000164078)
Protein
Protein identifiers
Ephrin type-A receptor 10 — Q5JZY3 (reviewed: Q5JZY3)
All UniProt accessions (6): Q5JZY3, H0YCC9, H0YD12, H0YEP6, H0YER4, J3KQG3
UniProt curated annotations — full annotation on UniProt →
Function. Receptor for members of the ephrin-A family. Binds to EFNA3, EFNA4 and EFNA5.
Subcellular location. Cell membrane Cell membrane Secreted.
Tissue specificity. Mainly expressed in testis.
Disease relevance. Deafness, autosomal dominant, 88 (DFNA88) [MIM:620283] A form of non-syndromic, sensorineural hearing loss. Sensorineural hearing loss results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. DFNA88 is characterized by postlingual, progressive and severe hearing loss with tinnitus. The disease may be caused by variants affecting the gene represented in this entry.
Domain organisation. The protein kinase domain is predicted to be catalytically inactive.
Miscellaneous. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
Similarity. Belongs to the protein kinase superfamily. Tyr protein kinase family. Ephrin receptor subfamily.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q5JZY3-1 | 1 | yes |
| Q5JZY3-2 | 2, Epha10s | |
| Q5JZY3-3 | 3, Epha10* |
RefSeq proteins (2): NP_001092909, NP_775912 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000719 | Prot_kinase_dom | Domain |
| IPR001090 | EPH_LBD | Domain |
| IPR001245 | Ser-Thr/Tyr_kinase_cat_dom | Domain |
| IPR001426 | Tyr_kinase_rcpt_V_CS | Conserved_site |
| IPR001660 | SAM | Domain |
| IPR003961 | FN3_dom | Domain |
| IPR008979 | Galactose-bd-like_sf | Homologous_superfamily |
| IPR011009 | Kinase-like_dom_sf | Homologous_superfamily |
| IPR013761 | SAM/pointed_sf | Homologous_superfamily |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR016257 | EPH | Family |
| IPR027936 | EPH_TM | Domain |
| IPR036116 | FN3_sf | Homologous_superfamily |
| IPR050449 | Ephrin_rcpt_TKs | Family |
Pfam: PF00041, PF01404, PF07647, PF07714, PF14575, PF25599
Catalyzed reactions (Rhea), 1 shown:
- L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+) (RHEA:10596)
UniProt features (30 total): sequence variant 11, domain 5, splice variant 4, glycosylation site 2, topological domain 2, sequence conflict 2, signal peptide 1, chain 1, region of interest 1, transmembrane region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q5JZY3-F1 | 79.56 | 0.40 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (2): 311, 486
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-2682334 | EPH-Ephrin signaling |
| R-HSA-3928663 | EPHA-mediated growth cone collapse |
| R-HSA-3928665 | EPH-ephrin mediated repulsion of cells |
MSigDB gene sets: 69 (showing top):
BENPORATH_ES_WITH_H3K27ME3, GOBP_NEUROGENESIS, VART_KSHV_INFECTION_ANGIOGENIC_MARKERS_UP, chr1p34, GOBP_EPHRIN_RECEPTOR_SIGNALING_PATHWAY, GOMF_TRANSMEMBRANE_RECEPTOR_PROTEIN_KINASE_ACTIVITY, LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN, GOCC_NEURON_PROJECTION, GOBP_CELL_PROJECTION_ORGANIZATION, ACEVEDO_METHYLATED_IN_LIVER_CANCER_DN, GOBP_CELL_SURFACE_RECEPTOR_PROTEIN_TYROSINE_KINASE_SIGNALING_PATHWAY, GOCC_SOMATODENDRITIC_COMPARTMENT, GOMF_PROTEIN_KINASE_ACTIVITY, GOMF_KINASE_ACTIVITY, GOMF_TRANSMEMBRANE_SIGNALING_RECEPTOR_ACTIVITY
GO Biological Process (4): axon guidance (GO:0007411), ephrin receptor signaling pathway (GO:0048013), protein phosphorylation (GO:0006468), cell surface receptor protein tyrosine kinase signaling pathway (GO:0007169)
GO Molecular Function (10): transmembrane-ephrin receptor activity (GO:0005005), ATP binding (GO:0005524), nucleotide binding (GO:0000166), protein kinase activity (GO:0004672), protein tyrosine kinase activity (GO:0004713), transmembrane receptor protein tyrosine kinase activity (GO:0004714), ephrin receptor activity (GO:0005003), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740)
GO Cellular Component (4): extracellular region (GO:0005576), plasma membrane (GO:0005886), membrane (GO:0016020), dendrite (GO:0030425)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| EPH-Ephrin signaling | 2 |
| Axon guidance | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| axonogenesis | 1 |
| neuron projection guidance | 1 |
| cell surface receptor protein tyrosine kinase signaling pathway | 1 |
| phosphorylation | 1 |
| protein modification process | 1 |
| enzyme-linked receptor protein signaling pathway | 1 |
| ephrin receptor activity | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| kinase activity | 1 |
| phosphotransferase activity, alcohol group as acceptor | 1 |
| catalytic activity, acting on a protein | 1 |
| protein kinase activity | 1 |
| protein tyrosine kinase activity | 1 |
| transmembrane receptor protein kinase activity | 1 |
| transmembrane receptor protein tyrosine kinase activity | 1 |
| ephrin receptor signaling pathway | 1 |
| binding | 1 |
| transferase activity, transferring phosphorus-containing groups | 1 |
| catalytic activity | 1 |
| membrane | 1 |
| cell periphery | 1 |
| neuron projection | 1 |
| dendritic tree | 1 |
Protein interactions and networks
STRING
1176 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EPHA10 | EFNA1 | P20827 | 993 |
| EPHA10 | EFNA4 | P52798 | 969 |
| EPHA10 | EFNA3 | P52797 | 960 |
| EPHA10 | EFNA5 | P52803 | 920 |
| EPHA10 | EFNA2 | O43921 | 919 |
| EPHA10 | EFNB1 | P98172 | 917 |
| EPHA10 | EFNB2 | P52799 | 882 |
| EPHA10 | EFNB3 | Q15768 | 774 |
| EPHA10 | EPHA7 | Q15375 | 659 |
| EPHA10 | PEAK1 | Q9H792 | 460 |
| EPHA10 | FN1 | P02751 | 449 |
| EPHA10 | ERBB3 | P21860 | 438 |
| EPHA10 | PTK7 | Q13308 | 434 |
| EPHA10 | EPHB6 | O15197 | 430 |
| EPHA10 | RTN4RL1 | Q86UN2 | 425 |
IntAct
5 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| EPHA10 | MYO1C | psi-mi:“MI:0914”(association) | 0.350 |
| EPHA7 | PLOD3 | psi-mi:“MI:0914”(association) | 0.350 |
| EPHA10 | PLOD2 | psi-mi:“MI:2364”(proximity) | 0.270 |
BioGRID (92): EPHA10 (Two-hybrid), EPHA10 (Two-hybrid), EPHA10 (Two-hybrid), EPHA10 (Two-hybrid), EPHA10 (Affinity Capture-MS), EPHA10 (Affinity Capture-MS), HSPA1B (Affinity Capture-MS), DNAJC3 (Affinity Capture-MS), MYO6 (Affinity Capture-MS), DNAJC16 (Affinity Capture-MS), DNAJB11 (Affinity Capture-MS), FAF2 (Affinity Capture-MS), PDIA4 (Affinity Capture-MS), HLA-C (Affinity Capture-MS), CALM3 (Affinity Capture-MS)
ESM2 similar proteins: A0A061IR73, A0A7N9VSG0, A7YSY2, D3KCC4, D3ZU57, D4A2B7, O08644, O15197, O19179, O43542, O75064, O95382, P0C0K6, P0C0K7, P51840, P52785, P52824, P54777, Q02846, Q05932, Q13470, Q13608, Q1HG60, Q3ZBE0, Q4KM32, Q5JZY3, Q643R3, Q6MG64, Q6NVG1, Q6ZPS2, Q76MJ5, Q7TNJ2, Q80SX8, Q8BYG9, Q8IZY2, Q8NFF5, Q8R5G7, Q8TDZ2, Q8WWN8, Q91V24
Diamond homologs: O08644, O08680, O09127, O13146, O13147, O13148, O15197, O35346, O42422, O45539, O73875, O73878, P00523, P00525, P00527, P00530, P00541, P00542, P00543, P05480, P07332, P09324, P09759, P09760, P0C0K6, P0C0K7, P12931, P13115, P13116, P14084, P14085, P14234, P14238, P15054, P16591, P16879, P18106, P21709, P24604, P28693
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| EPHA7 | “up-regulates activity” | EPHA10 | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
205 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 161 |
| Likely benign | 7 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1698698 | NM_001099439.1(EPHA10):c.-81_-73delinsAGC | Pathogenic |
SpliceAI
3870 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:37718659:A:AC | donor_gain | 1.0000 |
| 1:37718660:C:CC | donor_gain | 1.0000 |
| 1:37718767:C:CT | acceptor_gain | 1.0000 |
| 1:37719614:C:CT | acceptor_gain | 1.0000 |
| 1:37719616:C:CT | acceptor_gain | 1.0000 |
| 1:37719617:A:T | acceptor_gain | 1.0000 |
| 1:37719905:TCA:T | donor_loss | 1.0000 |
| 1:37719906:CAC:C | donor_loss | 1.0000 |
| 1:37719907:A:AC | donor_gain | 1.0000 |
| 1:37719907:ACGT:A | donor_gain | 1.0000 |
| 1:37719908:C:CT | donor_gain | 1.0000 |
| 1:37719908:CG:C | donor_gain | 1.0000 |
| 1:37719908:CGT:C | donor_gain | 1.0000 |
| 1:37719908:CGTC:C | donor_gain | 1.0000 |
| 1:37720057:CT:C | acceptor_gain | 1.0000 |
| 1:37720059:C:CC | acceptor_gain | 1.0000 |
| 1:37720781:AC:A | donor_gain | 1.0000 |
| 1:37720782:CC:C | donor_gain | 1.0000 |
| 1:37720852:C:CT | acceptor_gain | 1.0000 |
| 1:37720852:C:T | acceptor_gain | 1.0000 |
| 1:37720853:A:T | acceptor_gain | 1.0000 |
| 1:37721841:CCGCC:C | acceptor_gain | 1.0000 |
| 1:37721842:CGCCC:C | acceptor_gain | 1.0000 |
| 1:37723003:T:TA | donor_gain | 1.0000 |
| 1:37723022:T:TA | donor_gain | 1.0000 |
| 1:37723042:T:TA | donor_gain | 1.0000 |
| 1:37723162:TTTGA:T | acceptor_gain | 1.0000 |
| 1:37723167:C:CC | acceptor_gain | 1.0000 |
| 1:37723309:A:AC | donor_gain | 1.0000 |
| 1:37723310:C:CC | donor_gain | 1.0000 |
AlphaMissense
6470 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:37753156:C:A | W359C | 1.000 |
| 1:37753156:C:G | W359C | 1.000 |
| 1:37761469:C:A | W262C | 1.000 |
| 1:37761469:C:G | W262C | 1.000 |
| 1:37761662:C:T | C198Y | 1.000 |
| 1:37761680:A:G | F192S | 1.000 |
| 1:37761772:G:C | F161L | 1.000 |
| 1:37761772:G:T | F161L | 1.000 |
| 1:37761773:A:C | F161C | 1.000 |
| 1:37761774:A:G | F161L | 1.000 |
| 1:37761878:A:G | F126S | 1.000 |
| 1:37761934:G:C | F107L | 1.000 |
| 1:37761934:G:T | F107L | 1.000 |
| 1:37761935:A:C | F107C | 1.000 |
| 1:37761935:A:G | F107S | 1.000 |
| 1:37761936:A:G | F107L | 1.000 |
| 1:37761992:A:G | L88P | 1.000 |
| 1:37762025:C:G | C77S | 1.000 |
| 1:37762025:C:T | C77Y | 1.000 |
| 1:37762026:A:T | C77S | 1.000 |
| 1:37762081:C:A | W58C | 1.000 |
| 1:37762081:C:G | W58C | 1.000 |
| 1:37762083:A:G | W58R | 1.000 |
| 1:37762083:A:T | W58R | 1.000 |
| 1:37762806:C:A | W50C | 1.000 |
| 1:37762806:C:G | W50C | 1.000 |
| 1:37731494:A:G | F527S | 0.999 |
| 1:37735326:C:A | W474C | 0.999 |
| 1:37735326:C:G | W474C | 0.999 |
| 1:37752946:G:C | N429K | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000001272 (1:37752210 G>T), RS1000010124 (1:37763347 C>T), RS1000047687 (1:37739328 C>T), RS1000076597 (1:37764700 C>A,G), RS1000097682 (1:37717674 T>C), RS1000248889 (1:37722144 A>C), RS1000301173 (1:37721884 C>T), RS1000357428 (1:37727762 G>A), RS1000363892 (1:37733430 G>A), RS1000398869 (1:37739747 G>A), RS1000549331 (1:37763568 G>A), RS1000659198 (1:37765534 C>G,T), RS1000700732 (1:37732216 C>A), RS1000717810 (1:37738936 G>C), RS1000747282 (1:37728776 A>G)
Disease associations
OMIM: gene MIM:611123 | disease phenotypes: MIM:620283
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| hearing loss, autosomal dominant 88 | Limited | Autosomal dominant |
| postlingual non-syndromic genetic hearing loss | Limited | Autosomal dominant |
Mondo (2): hearing loss, autosomal dominant 88 (MONDO:0859527), postlingual non-syndromic genetic hearing loss (MONDO:0016298)
Orphanet (0):
HPO phenotypes
3 total (3 of 3 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000365 | Hearing impairment |
| HP:0011462 | Young adult onset |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002115_4 | Axial length | 4.000000e-13 |
| GCST003476_2 | Eyebrow thickness | 7.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005318 | axial length measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2363043 (PROTEIN FAMILY)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: catalytic receptor — Type XIII RTKs: Ephrin receptor family
CTD chemical–gene interactions
28 total (human), top 28 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Aflatoxin B1 | increases methylation, decreases methylation | 2 |
| 2,2’,3,4’,5,5’,6-heptachlorobiphenyl | decreases expression | 1 |
| propionaldehyde | increases expression | 1 |
| bisphenol A | decreases expression | 1 |
| kojic acid | decreases expression | 1 |
| ethyl-p-hydroxybenzoate | decreases expression | 1 |
| arsenite | increases methylation | 1 |
| sodium arsenite | decreases expression | 1 |
| butyraldehyde | increases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | increases expression, affects response to substance | 1 |
| pentanal | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| Aldehydes | increases expression | 1 |
| Arsenic | affects methylation | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Diazinon | increases methylation | 1 |
| Estradiol | increases expression | 1 |
| Lipopolysaccharides | increases expression, affects response to substance | 1 |
| Malathion | increases expression | 1 |
| Methapyrilene | decreases methylation | 1 |
| Thalidomide | decreases expression | 1 |
| Triclosan | decreases expression | 1 |
| Valproic Acid | decreases methylation | 1 |
| Cyclosporine | decreases methylation | 1 |
| Okadaic Acid | increases expression | 1 |
| Acrylamide | decreases expression | 1 |
| Permethrin | increases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: hearing loss, autosomal dominant 88, postlingual non-syndromic genetic hearing loss
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): hearing loss, autosomal dominant 88, postlingual non-syndromic genetic hearing loss