EPN3
gene geneOn this page
Also known as FLJ20778MGC129899
Summary
EPN3 (epsin 3, HGNC:18235) is a protein-coding gene on chromosome 17q21.33, encoding Epsin-3 (Q9H201).
Predicted to enable clathrin binding activity and phospholipid binding activity. Predicted to be involved in endocytosis. Located in several cellular components, including clathrin-coated vesicle; cytoplasmic side of plasma membrane; and perinuclear region of cytoplasm.
Source: NCBI Gene 55040 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 157 total
- MANE Select transcript:
NM_017957
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:18235 |
| Approved symbol | EPN3 |
| Name | epsin 3 |
| Location | 17q21.33 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ20778, MGC129899 |
| Ensembl gene | ENSG00000049283 |
| Ensembl biotype | protein_coding |
| OMIM | 607264 |
| Entrez | 55040 |
Gene structure
Transcript identifiers
Ensembl transcripts: 25 — 15 protein_coding, 6 protein_coding_CDS_not_defined, 4 nonsense_mediated_decay
ENST00000268933, ENST00000503246, ENST00000503690, ENST00000504857, ENST00000507467, ENST00000507709, ENST00000507998, ENST00000510045, ENST00000510462, ENST00000511414, ENST00000512291, ENST00000512379, ENST00000514874, ENST00000515028, ENST00000515126, ENST00000571402, ENST00000574464, ENST00000883551, ENST00000883552, ENST00000883553, ENST00000883554, ENST00000883555, ENST00000883556, ENST00000958978, ENST00000958979
RefSeq mRNA: 1 — MANE Select: NM_017957
NM_017957
CCDS: CCDS11570
Canonical transcript exons
ENST00000268933 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000737149 | 50538884 | 50538964 |
| ENSE00000819918 | 50536421 | 50537118 |
| ENSE00002057561 | 50532735 | 50532985 |
| ENSE00002074029 | 50541844 | 50543750 |
| ENSE00003467348 | 50540793 | 50541062 |
| ENSE00003485889 | 50540247 | 50540334 |
| ENSE00003495621 | 50539187 | 50539315 |
| ENSE00003631482 | 50541464 | 50541694 |
| ENSE00003642383 | 50538079 | 50538197 |
| ENSE00003665960 | 50541229 | 50541333 |
Expression profiles
Bgee: expression breadth ubiquitous, 132 present calls, max score 95.26.
FANTOM5 (CAGE): breadth broad, TPM avg 4.8790 / max 177.3424, expressed in 435 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 161676 | 3.1540 | 381 |
| 161677 | 0.8474 | 261 |
| 161680 | 0.4876 | 131 |
| 161675 | 0.3049 | 130 |
| 161679 | 0.0337 | 16 |
| 161678 | 0.0303 | 9 |
| 161674 | 0.0212 | 13 |
Top tissues by expression
135 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lower esophagus mucosa | UBERON:0035834 | 95.26 | gold quality |
| esophagus mucosa | UBERON:0002469 | 93.09 | gold quality |
| apex of heart | UBERON:0002098 | 91.48 | gold quality |
| skin of leg | UBERON:0001511 | 89.59 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 89.01 | gold quality |
| zone of skin | UBERON:0000014 | 88.89 | gold quality |
| skin of abdomen | UBERON:0001416 | 88.09 | gold quality |
| body of stomach | UBERON:0001161 | 87.46 | gold quality |
| body of pancreas | UBERON:0001150 | 86.52 | gold quality |
| stomach | UBERON:0000945 | 86.37 | gold quality |
| prostate gland | UBERON:0002367 | 85.73 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 85.41 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 84.52 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 84.44 | gold quality |
| minor salivary gland | UBERON:0001830 | 84.13 | gold quality |
| left adrenal gland | UBERON:0001234 | 84.10 | gold quality |
| right adrenal gland | UBERON:0001233 | 83.98 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 83.97 | gold quality |
| fundus of stomach | UBERON:0001160 | 83.93 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 83.54 | silver quality |
| duodenum | UBERON:0002114 | 83.46 | gold quality |
| metanephros cortex | UBERON:0010533 | 82.85 | gold quality |
| placenta | UBERON:0001987 | 82.48 | gold quality |
| left ovary | UBERON:0002119 | 82.30 | gold quality |
| ovary | UBERON:0000992 | 81.96 | gold quality |
| vagina | UBERON:0000996 | 81.81 | gold quality |
| heart left ventricle | UBERON:0002084 | 81.80 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 81.21 | gold quality |
| adrenal gland | UBERON:0002369 | 81.10 | gold quality |
| pancreas | UBERON:0001264 | 80.86 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.08 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
49 targeting EPN3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-23B-5P | 99.98 | 66.07 | 587 |
| HSA-MIR-23A-5P | 99.94 | 65.39 | 468 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-2052 | 99.79 | 69.37 | 2031 |
| HSA-MIR-4699-3P | 99.71 | 70.15 | 3142 |
| HSA-MIR-5004-5P | 99.68 | 66.63 | 1294 |
| HSA-MIR-29B-2-5P | 99.67 | 68.98 | 1726 |
| HSA-MIR-580-3P | 99.67 | 69.23 | 1841 |
| HSA-MIR-545-5P | 99.66 | 70.18 | 2308 |
| HSA-MIR-4328 | 99.57 | 71.06 | 4094 |
| HSA-MIR-6733-3P | 99.54 | 67.80 | 1281 |
| HSA-MIR-4441 | 99.49 | 66.56 | 3216 |
| HSA-MIR-203A-3P | 99.49 | 70.56 | 2806 |
| HSA-MIR-6081 | 99.48 | 66.07 | 1446 |
| HSA-MIR-6507-3P | 99.35 | 67.32 | 1059 |
| HSA-MIR-888-5P | 99.30 | 70.15 | 1855 |
| HSA-MIR-16-2-3P | 99.29 | 70.60 | 1954 |
| HSA-MIR-195-3P | 99.29 | 70.61 | 1954 |
| HSA-MIR-4641 | 99.28 | 66.64 | 744 |
| HSA-MIR-1253 | 99.12 | 67.08 | 1688 |
| HSA-MIR-4758-3P | 99.12 | 63.96 | 869 |
| HSA-MIR-4254 | 99.11 | 65.15 | 1315 |
| HSA-MIR-661 | 99.09 | 65.94 | 2062 |
| HSA-MIR-3164 | 99.02 | 68.39 | 1071 |
| HSA-MIR-6820-3P | 99.02 | 68.50 | 1035 |
Literature-anchored findings (GeneRIF, showing 5)
- High expression of epsin (EPN3) was associated with increased risk of late metastasis. (PMID:27926932)
- These results suggested that EPN3 enhances the migration and invasion of glioblastoma cells by activating the transcription factors Slug, Twist and ZEB1, but not Snail 1 or ZEB2, to induce EMT in glioma cells; EPN3 involvement in the Notch and WNT/betacatenin signaling pathways may contribute to this process. (PMID:30226603)
- EPN3 plays oncogenic role in non-small cell lung cancer by activating the JAK1/2-STAT3 pathway. (PMID:37186036)
- Expression of Epsin3 and its interaction with Notch signalling in oral epithelial dysplasia and oral squamous cell carcinoma. (PMID:37339783)
- Lowering expression of Epsin-3 inhibits migration and invasion of lung adenocarcinoma cells by inhibiting the epithelial-mesenchymal transition. (PMID:39048677)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | epn3b | ENSDARG00000004633 |
| danio_rerio | epn3a | ENSDARG00000078953 |
| mus_musculus | Epn3 | ENSMUSG00000010080 |
| rattus_norvegicus | Epn3 | ENSRNOG00000003284 |
| drosophila_melanogaster | lqf | FBGN0028582 |
| caenorhabditis_elegans | WBGENE00001329 |
Paralogs (5): EPN1 (ENSG00000063245), EPN2 (ENSG00000072134), CLINT1 (ENSG00000113282), MYCBPAP (ENSG00000136449), ENTHD1 (ENSG00000176177)
Protein
Protein identifiers
Epsin-3 — Q9H201 (reviewed: Q9H201)
Alternative names: EPS-15-interacting protein 3
All UniProt accessions (9): D6R907, D6RBA4, D6RBI9, D6RBR6, D6REL6, D6RF39, D6RFG3, I6L9I8, Q9H201
UniProt curated annotations — full annotation on UniProt →
Subcellular location. Cytoplasm. Perinuclear region. Cytoplasmic vesicle. Clathrin-coated vesicle. Nucleus.
Tissue specificity. Detected in migrating keratinocytes from wounded skin, but not in differentiating keratinocytes or in normal skin. Detected in chronic wounds, basal cell carcinoma and ulcerative colitis.
Induction. In keratinocytes, by wounding or contact with collagen.
Miscellaneous. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
Similarity. Belongs to the epsin family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9H201-1 | 1 | yes |
| Q9H201-2 | 2 |
RefSeq proteins (1): NP_060427* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003903 | UIM_dom | Conserved_site |
| IPR008942 | ENTH_VHS | Homologous_superfamily |
| IPR013809 | ENTH | Domain |
Pfam: PF01417, PF02809
UniProt features (37 total): repeat 8, region of interest 7, binding site 6, domain 3, compositionally biased region 3, modified residue 3, sequence conflict 3, splice variant 2, chain 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9H201-F1 | 61.01 | 0.25 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (6): 8; 11; 25; 30; 63; 73
Post-translational modifications (3): 191, 192, 264
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 144 (showing top):
TGACCTY_ERR1_Q2, GOBP_VESICLE_MEDIATED_TRANSPORT, CAGCTG_AP4_Q5, ONDER_CDH1_TARGETS_3_DN, CHARAFE_BREAST_CANCER_BASAL_VS_MESENCHYMAL_UP, GOCC_COATED_VESICLE, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5, ARGGGTTAA_UNKNOWN, TGANTCA_AP1_C, GOCC_VESICLE_COAT, AACTTT_UNKNOWN, RYTTCCTG_ETS2_B, P300_01, KEGG_ENDOCYTOSIS, CCCNNGGGAR_OLF1_01
GO Biological Process (1): endocytosis (GO:0006897)
GO Molecular Function (5): phospholipid binding (GO:0005543), clathrin binding (GO:0030276), EH domain binding (GO:1990175), protein binding (GO:0005515), lipid binding (GO:0008289)
GO Cellular Component (12): nucleus (GO:0005634), nucleoplasm (GO:0005654), endosome (GO:0005768), plasma membrane (GO:0005886), clathrin-coated pit (GO:0005905), cytoplasmic side of plasma membrane (GO:0009898), clathrin vesicle coat (GO:0030125), clathrin-coated vesicle (GO:0030136), perinuclear region of cytoplasm (GO:0048471), extracellular exosome (GO:0070062), cytoplasm (GO:0005737), cytoplasmic vesicle (GO:0031410)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| binding | 2 |
| endomembrane system | 2 |
| membrane | 2 |
| cytoplasm | 2 |
| vesicle budding from membrane | 1 |
| membrane invagination | 1 |
| vesicle-mediated transport | 1 |
| import into cell | 1 |
| lipid binding | 1 |
| protein binding | 1 |
| protein domain specific binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| cytoplasmic vesicle | 1 |
| cell periphery | 1 |
| plasma membrane | 1 |
| cytoplasmic side of membrane | 1 |
| clathrin coat | 1 |
| vesicle coat | 1 |
| clathrin-coated vesicle membrane | 1 |
| coated vesicle | 1 |
| extracellular vesicle | 1 |
| intracellular anatomical structure | 1 |
| intracellular vesicle | 1 |
Protein interactions and networks
STRING
1261 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EPN3 | EPS15 | P42566 | 995 |
| EPN3 | SNAP91 | O60641 | 979 |
| EPN3 | ITSN1 | Q15811 | 968 |
| EPN3 | ITSN2 | Q9NZM3 | 957 |
| EPN3 | HIP1R | O75146 | 954 |
| EPN3 | CLTC | Q00610 | 935 |
| EPN3 | CLTCL1 | P53675 | 932 |
| EPN3 | AMPH | P49418 | 872 |
| EPN3 | PICALM | Q13492 | 870 |
| EPN3 | BIN1 | O00499 | 836 |
| EPN3 | FCHO1 | O14526 | 818 |
| EPN3 | AP2B1 | P21851 | 801 |
| EPN3 | EPS15L1 | Q9UBC2 | 795 |
| EPN3 | CLTB | P09497 | 790 |
| EPN3 | SYNJ1 | O43426 | 787 |
IntAct
15 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| YWHAE | RGS12 | psi-mi:“MI:0914”(association) | 0.610 |
| YWHAE | SRSF10 | psi-mi:“MI:0914”(association) | 0.560 |
| EPN3 | HSP90B1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| RNF11 | EPN3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| EPN3 | LAPTM5 | psi-mi:“MI:0915”(physical association) | 0.370 |
| PLEKHA7 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| RTCB | MCRIP1 | psi-mi:“MI:0914”(association) | 0.350 |
| EPN3 | MID1 | psi-mi:“MI:0914”(association) | 0.350 |
| ZC3H10 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.350 |
| PAAT | HIP1 | psi-mi:“MI:0914”(association) | 0.350 |
| RBM47 | IGF2BP3 | psi-mi:“MI:0914”(association) | 0.350 |
| EPN3 | PHGDH | psi-mi:“MI:0914”(association) | 0.350 |
| KLHL22 | TRAV18 | psi-mi:“MI:0914”(association) | 0.350 |
| CDH1 | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.270 |
BioGRID (100): EPN3 (Affinity Capture-Western), UBB (Affinity Capture-MS), VPS39 (Affinity Capture-MS), HSPA1L (Affinity Capture-MS), EPN2 (Affinity Capture-MS), EPN1 (Affinity Capture-MS), TNKS2 (Affinity Capture-MS), TNKS (Affinity Capture-MS), PHGDH (Affinity Capture-MS), MID2 (Affinity Capture-MS), MID1 (Affinity Capture-MS), TRIM32 (Affinity Capture-MS), SMURF1 (Affinity Capture-MS), KCTD10 (Affinity Capture-MS), CDC27 (Affinity Capture-MS)
ESM2 similar proteins: A0A0U1RR37, A1L170, A1L1I3, A1L260, A2AMM0, A4IFJ0, B5G1P1, D3ZQL6, E7F5E1, G5BQH4, O08919, O54724, O60237, O75420, P06759, P33622, P53814, P85125, Q2KI85, Q2TAL5, Q3T044, Q3UMT1, Q4RTJ5, Q4V882, Q5I1X5, Q5U2R6, Q63312, Q6NZI2, Q75AS0, Q80VC9, Q8BG95, Q8BGT6, Q8C0J6, Q8CI12, Q8IV56, Q8K382, Q8N3F8, Q8TEH3, Q8WUF5, Q91VJ2
Diamond homologs: A7Z035, O74423, O88339, O95208, P47160, P78813, Q05785, Q12518, Q14677, Q4V882, Q54EH1, Q67YI9, Q80VP1, Q8CHU3, Q8IYW4, Q8VY07, Q91W69, Q93YP4, Q99KN9, Q9H201, Q9Y6I3, Q9Z1Z3, Q07872
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
157 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 141 |
| Likely benign | 8 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1470 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:50537115:AACT:A | donor_gain | 1.0000 |
| 17:50537116:ACT:A | donor_gain | 1.0000 |
| 17:50537117:CT:C | donor_gain | 1.0000 |
| 17:50537117:CTG:C | donor_loss | 1.0000 |
| 17:50537119:G:GG | donor_gain | 1.0000 |
| 17:50537120:T:G | donor_loss | 1.0000 |
| 17:50537121:GA:G | donor_gain | 1.0000 |
| 17:50537123:G:GG | donor_gain | 1.0000 |
| 17:50538077:A:AG | acceptor_gain | 1.0000 |
| 17:50538078:G:GA | acceptor_gain | 1.0000 |
| 17:50538102:A:AG | acceptor_gain | 1.0000 |
| 17:50538194:GAAG:G | donor_gain | 1.0000 |
| 17:50538195:AAGG:A | donor_loss | 1.0000 |
| 17:50538882:A:AG | acceptor_gain | 1.0000 |
| 17:50538883:G:GG | acceptor_gain | 1.0000 |
| 17:50538883:GCCT:G | acceptor_gain | 1.0000 |
| 17:50539182:TGCAG:T | acceptor_loss | 1.0000 |
| 17:50539183:GCA:G | acceptor_loss | 1.0000 |
| 17:50539184:CAG:C | acceptor_loss | 1.0000 |
| 17:50539185:A:AG | acceptor_gain | 1.0000 |
| 17:50539185:AG:A | acceptor_gain | 1.0000 |
| 17:50539185:AGGAG:A | acceptor_gain | 1.0000 |
| 17:50539186:G:GG | acceptor_gain | 1.0000 |
| 17:50539186:G:T | acceptor_loss | 1.0000 |
| 17:50539186:GG:G | acceptor_gain | 1.0000 |
| 17:50539186:GGA:G | acceptor_gain | 1.0000 |
| 17:50539186:GGAGG:G | acceptor_gain | 1.0000 |
| 17:50539311:GCCAG:G | donor_gain | 1.0000 |
| 17:50539312:CCAGG:C | donor_loss | 1.0000 |
| 17:50539313:CAGG:C | donor_loss | 1.0000 |
AlphaMissense
4055 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:50536635:G:C | A27P | 1.000 |
| 17:50536767:T:A | W71R | 1.000 |
| 17:50536767:T:C | W71R | 1.000 |
| 17:50536784:G:C | K76N | 1.000 |
| 17:50536784:G:T | K76N | 1.000 |
| 17:50538157:T:C | L214P | 1.000 |
| 17:50538163:T:C | L216P | 1.000 |
| 17:50536629:C:A | R25S | 0.999 |
| 17:50536630:G:C | R25P | 0.999 |
| 17:50536636:C:A | A27D | 0.999 |
| 17:50536653:T:A | W33R | 0.999 |
| 17:50536653:T:C | W33R | 0.999 |
| 17:50536655:G:C | W33C | 0.999 |
| 17:50536655:G:T | W33C | 0.999 |
| 17:50536686:G:C | A44P | 0.999 |
| 17:50536769:G:C | W71C | 0.999 |
| 17:50536769:G:T | W71C | 0.999 |
| 17:50536782:A:C | K76Q | 0.999 |
| 17:50536782:A:G | K76E | 0.999 |
| 17:50536785:G:C | A77P | 0.999 |
| 17:50536789:T:C | L78P | 0.999 |
| 17:50536795:T:G | L80W | 0.999 |
| 17:50536807:T:C | L84P | 0.999 |
| 17:50536914:G:C | G120R | 0.999 |
| 17:50536915:G:A | G120D | 0.999 |
| 17:50536927:G:C | R124P | 0.999 |
| 17:50538151:T:C | L212P | 0.999 |
| 17:50538165:G:C | A217P | 0.999 |
| 17:50538169:T:C | L218P | 0.999 |
| 17:50536592:C:A | N12K | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000045732 (17:50542894 C>T), RS1000053970 (17:50543628 C>T), RS1000111981 (17:50537898 T>C), RS1000403921 (17:50543974 C>T), RS1000889614 (17:50542410 T>G), RS1000897065 (17:50538085 C>A,G,T), RS1000964927 (17:50533487 G>A), RS1001073477 (17:50532628 T>C), RS1001303235 (17:50532908 C>G), RS1001476218 (17:50533733 T>C), RS1001798073 (17:50541419 G>A), RS1001842707 (17:50543014 G>C), RS1002228068 (17:50543255 C>G,T), RS1002239869 (17:50537555 A>T), RS1002315424 (17:50533384 G>A)
Disease associations
OMIM: gene MIM:607264 | disease phenotypes: MIM:226600
GenCC curated gene-disease
Mondo (1): recessive dystrophic epidermolysis bullosa (MONDO:0009179)
Orphanet (2): Autosomal recessive generalized dystrophic epidermolysis bullosa, severe form (Orphanet:79408), Recessive dystrophic epidermolysis bullosa inversa (Orphanet:79409)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST90020026_458 | Hip index | 2.000000e-08 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008039 | BMI-adjusted hip circumference |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
44 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 6 |
| sodium arsenite | affects cotreatment, decreases expression, increases abundance, increases expression | 3 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| Resveratrol | affects cotreatment, decreases expression | 2 |
| Air Pollutants | decreases expression, increases abundance, increases expression | 2 |
| Benzo(a)pyrene | increases methylation, affects methylation, decreases methylation, increases expression | 2 |
| Carbamazepine | affects expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tetrachlorodibenzodioxin | decreases expression, increases expression | 2 |
| Particulate Matter | increases expression, decreases expression, increases abundance | 2 |
| propionaldehyde | increases expression | 1 |
| trichostatin A | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| corosolic acid | decreases expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| clothianidin | decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Oxaliplatin | increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Panobinostat | affects cotreatment, increases expression | 1 |
| Microplastics | decreases expression, increases abundance | 1 |
| Arsenic | decreases expression, increases abundance, increases expression, affects cotreatment | 1 |
| Cannabidiol | decreases expression | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Copper | affects cotreatment, decreases expression | 1 |
| Diclofenac | affects expression | 1 |
Clinical trials (associated diseases)
27 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04213261 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study of FCX-007 for Recessive Dystrophic Epidermolysis Bullosa |
| NCT04227106 | PHASE3 | COMPLETED | Phase 3, Open-label Clinical Trial of EB-101 for the Treatment of Recessive Dystrophic Epidermolysis Bullosa (RDEB) |
| NCT04491604 | PHASE3 | COMPLETED | Ph 3 Efficacy and Safety of B-VEC for the Treatment of DEB |
| NCT04917874 | PHASE3 | COMPLETED | A Long-term Treatment With B-VEC for Dystrophic Epidermolysis Bullosa |
| NCT05725018 | PHASE3 | ACTIVE_NOT_RECRUITING | A Phase 3b Study for the Treatment of Dystrophic Epidermolysis Bullosa (DEB) in New and Previously EB-101 Treated Patients |
| NCT07016750 | PHASE3 | RECRUITING | A Study Comparing KB803 and Matched Placebo in Patients With Dystrophic Epidermolysis Bullosa |
| NCT04599881 | PHASE2 | COMPLETED | A Study of PTR-01 in Recessive Dystrophic Epidermolysis Bullosa |
| NCT05143190 | PHASE2 | COMPLETED | Extension Study to PTR-01-002 (A Study in Recessive Dystrophic Epidermolysis Bullosa (RDEB) Patients Previously Treated With PTR-01) |
| NCT02493816 | PHASE1 | COMPLETED | Safety Study of Gene-modified Autologous Fibroblasts in Recessive Dystrophic Epidermolysis Bullosa |
| NCT06713434 | PHASE1 | ACTIVE_NOT_RECRUITING | Pilot Study of ELK-003 Eye Drops for Treating Ocular Manifestations of Epidermolysis Bullosa |
| NCT02323789 | PHASE1/PHASE2 | UNKNOWN | Mesenchymal Stromal Cells in Adults With Recessive Dystrophic Epidermolysis Bullosa |
| NCT02698735 | PHASE1/PHASE2 | COMPLETED | Gentamicin Therapy for Recessive Dystrophic Epidermolysis Bullosa (RDEB) Nonsense Mutation Patients |
| NCT02984085 | PHASE1/PHASE2 | TERMINATED | Clinical Trial to Assess Safety and Efficacy of Autologous Cultured Epidermal Grafts Containing Epidermal Stem Cells Genetically Modified in Patients With RDEB. |
| NCT03012191 | PHASE1/PHASE2 | COMPLETED | Gentamicin for RDEB |
| NCT03392909 | PHASE1/PHASE2 | UNKNOWN | Intravenous Gentamicin Therapy for Recessive Dystrophic Epidermolysis Bullosa (RDEB) |
| NCT03529877 | PHASE1/PHASE2 | COMPLETED | Allogeneic ABCB5-positive Stem Cells for Treatment of Epidermolysis Bullosa |
| NCT03752905 | PHASE1/PHASE2 | COMPLETED | A Phase 1/2 Trial of PTR-01 in Adult Patients With Recessive Dystrophic Epidermolysis Bullosa (RDEB) |
| NCT04520022 | PHASE1/PHASE2 | COMPLETED | Safety and Effectiveness Study of Allogeneic Umbilical Cord Blood-derived Mesenchymal Stem Cell in Patients With RDEB |
| NCT06834035 | PHASE1/PHASE2 | RECRUITING | Targeting Collagen VII Antibodies With IV IgG in Dystrophic Epidermolysis Bullosa |
| NCT07011589 | PHASE1/PHASE2 | NOT_YET_RECRUITING | Targeting Collagen VII Antibodies in Bullous Diseases Using Efgartigimod IV (VYVGART) |
| NCT07193134 | PHASE1/PHASE2 | RECRUITING | GMEB-SASS: A Gene-Modified Skin Substitute for RDEB Treatment |
| NCT04177498 | EARLY_PHASE1 | COMPLETED | Rigosertib in Patients With Recessive Dystrophic Epidermolysis Bullosa Associated SCC |
| NCT01874769 | Not specified | COMPLETED | Study of Immune Tolerance and Capacity for Wound Healing of Patients With Recessive Dystrophic Epidermolysis Bullosa (RDEB) |
| NCT04285294 | Not specified | UNKNOWN | Molecular Signatures of Cutaneous Squamous Cell Carcinoma During Recessive Dystrophic Epidermolysis Bullosa |
| NCT04917887 | Not specified | RECRUITING | Long-Term Follow-up Protocol |
| NCT05708677 | Not specified | ENROLLING_BY_INVITATION | A Long-Term Extension Study for Participants Previously Treated With EB-101 for the Treatment of RDEB |
| NCT05944250 | Not specified | COMPLETED | A Pilot Study to Evaluate a Temporary Skin Substitute (Spincare® Matrix) for Wound Healing in RDEB Patients |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): recessive dystrophic epidermolysis bullosa