EPX
gene geneOn this page
Also known as EPOEPPEPX-PEN
Summary
EPX (eosinophil peroxidase, HGNC:3423) is a protein-coding gene on chromosome 17q22, encoding Eosinophil peroxidase (P11678). Mediates tyrosine nitration of secondary granule proteins in mature resting eosinophils.
This gene is a member of the peroxidase gene family and is expressed in eosinophils. The encoded preproprotein is proteolytically processed into covalently attached heavy and light chains to form the mature enzyme, which functions as an oxidant. The enzyme is released at sites of parasitic infection or allergen stimulation to mediate lysis of protozoa or parasitic worms. The gene is found in a gene cluster with other peroxidase genes on chromosome 17. Mutations in this gene result in eosinophil peroxidase deficiency.
Source: NCBI Gene 8288 — RefSeq curated summary.
At a glance
- Gene–disease (curated): eosinophil peroxidase deficiency (Limited, GenCC)
- Clinical variants (ClinVar): 162 total
- Phenotypes (HPO): 2
- Druggable target: yes
- MANE Select transcript:
NM_000502
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:3423 |
| Approved symbol | EPX |
| Name | eosinophil peroxidase |
| Location | 17q22 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | EPO, EPP, EPX-PEN |
| Ensembl gene | ENSG00000121053 |
| Ensembl biotype | protein_coding |
| OMIM | 131399 |
| Entrez | 8288 |
Gene structure
Transcript identifiers
Ensembl transcripts: 1 — 1 protein_coding
ENST00000225371
RefSeq mRNA: 1 — MANE Select: NM_000502
NM_000502
CCDS: CCDS11602
Canonical transcript exons
ENST00000225371 — 13 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000739111 | 58192726 | 58192922 |
| ENSE00000739112 | 58193038 | 58193131 |
| ENSE00000739113 | 58193371 | 58193546 |
| ENSE00000739114 | 58193714 | 58193831 |
| ENSE00000739115 | 58193963 | 58194092 |
| ENSE00000739116 | 58194964 | 58195170 |
| ENSE00000739117 | 58196939 | 58197257 |
| ENSE00000739118 | 58199040 | 58199200 |
| ENSE00000739119 | 58199539 | 58199794 |
| ENSE00000739153 | 58203081 | 58203318 |
| ENSE00000739157 | 58204222 | 58204434 |
| ENSE00001693468 | 58204736 | 58205174 |
| ENSE00002512830 | 58200225 | 58200395 |
Expression profiles
Bgee: expression breadth ubiquitous, 113 present calls, max score 99.00.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.5876 / max 284.1782, expressed in 36 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 161897 | 0.5776 | 32 |
| 208278 | 0.0100 | 3 |
Top tissues by expression
246 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 99.00 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 94.30 | gold quality |
| bone marrow | UBERON:0002371 | 85.72 | gold quality |
| bone element | UBERON:0001474 | 84.76 | gold quality |
| bone marrow cell | CL:0002092 | 77.00 | gold quality |
| pancreatic ductal cell | CL:0002079 | 66.45 | silver quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 66.10 | gold quality |
| endometrium epithelium | UBERON:0004811 | 66.03 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 63.13 | gold quality |
| cerebellar cortex | UBERON:0002129 | 62.97 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 62.59 | gold quality |
| diaphragm | UBERON:0001103 | 62.43 | gold quality |
| endothelial cell | CL:0000115 | 61.81 | gold quality |
| cerebellum | UBERON:0002037 | 61.43 | gold quality |
| cortical plate | UBERON:0005343 | 61.05 | gold quality |
| ileal mucosa | UBERON:0000331 | 60.48 | silver quality |
| right uterine tube | UBERON:0001302 | 59.00 | gold quality |
| prefrontal cortex | UBERON:0000451 | 56.08 | gold quality |
| spleen | UBERON:0002106 | 55.59 | gold quality |
| frontal pole | UBERON:0002795 | 55.25 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 55.16 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 54.93 | gold quality |
| right frontal lobe | UBERON:0002810 | 54.60 | gold quality |
| quadriceps femoris | UBERON:0001377 | 54.06 | gold quality |
| colonic epithelium | UBERON:0000397 | 53.99 | silver quality |
| ganglionic eminence | UBERON:0004023 | 53.79 | silver quality |
| blood | UBERON:0000178 | 53.78 | gold quality |
| frontal cortex | UBERON:0001870 | 53.59 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 53.57 | gold quality |
| cerebellar vermis | UBERON:0004720 | 53.48 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9801 | yes | 32551.67 |
| E-MTAB-9067 | yes | 12.87 |
| E-CURD-112 | yes | 9.72 |
| E-MTAB-10042 | yes | 7.34 |
| E-ANND-3 | no | 1.78 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CEBPA, CTCF, EGR1
miRNA regulators (miRDB)
31 targeting EPX, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-512-3P | 99.97 | 67.35 | 1049 |
| HSA-MIR-4267 | 99.96 | 66.53 | 2368 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-4261 | 99.59 | 70.30 | 3415 |
| HSA-MIR-24-3P | 99.59 | 69.97 | 1934 |
| HSA-MIR-4519 | 99.48 | 66.10 | 859 |
| HSA-MIR-519D-5P | 99.41 | 69.30 | 2057 |
| HSA-MIR-4505 | 99.27 | 67.81 | 2678 |
| HSA-MIR-6843-3P | 99.26 | 66.42 | 915 |
| HSA-MIR-5787 | 99.22 | 67.86 | 2628 |
| HSA-MIR-661 | 99.09 | 65.94 | 2062 |
| HSA-MIR-6814-5P | 99.03 | 66.68 | 1273 |
| HSA-MIR-4650-3P | 99.01 | 68.39 | 1062 |
| HSA-MIR-4710 | 98.61 | 65.96 | 1048 |
| HSA-MIR-4664-5P | 98.17 | 65.07 | 1020 |
| HSA-MIR-484 | 98.16 | 66.92 | 1074 |
| HSA-MIR-3155A | 98.16 | 66.09 | 965 |
| HSA-MIR-3155B | 98.16 | 66.09 | 965 |
| HSA-MIR-6847-5P | 97.93 | 66.74 | 1808 |
| HSA-MIR-4646-5P | 97.70 | 66.84 | 1692 |
| HSA-MIR-2467-5P | 97.36 | 67.71 | 991 |
| HSA-MIR-342-5P | 97.25 | 64.10 | 817 |
| HSA-MIR-10398-5P | 97.12 | 64.94 | 1051 |
| HSA-MIR-6858-3P | 96.37 | 64.41 | 771 |
| HSA-MIR-6747-5P | 96.17 | 64.99 | 743 |
| HSA-MIR-103B | 95.51 | 66.85 | 441 |
Literature-anchored findings (GeneRIF, showing 27)
- induces surface alteration, killing, and lysis of Mycobacterium tuberculosis (PMID:12540536)
- results suggest that Pro358Leu in EPO is strongly involved in the development of cedar pollinosis (PMID:14657871)
- Polymorphisms of the eosinophil peroxidase gene may be associated with Japanese cedar pollinosis. (PMID:15316147)
- Analysis of the role of thiocyanate (SCN-), in modulating the catalytic activity of myeloperoxidase (MPO) and other members of the lactoperoxidase (LPO) and eosinophil peroxidase (EPO) (PMID:15894800)
- The mechanisms by which eosinophil peroxidase oxidizes nitrite are reported. (PMID:16336215)
- post-translational tyrosine nitration of eosinophil granule toxins mediated by eosinophil peroxidase (PMID:18694936)
- No variation in genes eosinophil peroxidase for Atopic dermatitis pathogenesis in this German cohort. (PMID:19014520)
- Genetic variability in the EPO gene may contribute to the susceptibility to allergic rhinitis (or related phenotypes) in the Czech population. (PMID:19439985)
- EPO-dependent oxidative damage may play a role in tissue injury in bisulfite-exacerbated eosinophilic inflammatory disorders (PMID:20501663)
- HER2 was identified as a novel mediator of eosinophil peroxidase signaling. Eosinophil peroxidase, at noncytotoxic levels, can drive cell-cycle progression and proliferation. (PMID:21454806)
- A mechanism of induction of ASIC-3 expression relevant to AR was suggested by the finding that eosinophil peroxidase (EPO), acting via ERK1/2, induced the expression of ASIC-3 in epithelial cells. (PMID:22702502)
- Data indicate that eosinophil peroxidase (EPX)-based ELISA is the only eosinophil-specific assay. (PMID:22750539)
- Polymorphisms of EPX and ECP are associated to inflammatory bowel disease in an age and gender dependent manne. (PMID:23197886)
- Eosinophil peroxidase in sputum represents a unique biomarker of airway eosinophilia. (PMID:23931643)
- report the prevalence of a common SNP in the eosinophil protein x/eosinophil-derived neurotoxin (EPX/EDN, RNase2) and the association with the cellular contents of EPX/EDN and ECP (PMID:24738159)
- mRNA levels of eosinophil granule proteins, rather than sputum eosinophil%, may reflect airway hyperresponsiveness and airflow limitation. (PMID:24814827)
- A preferential role of EPO signaling via a specific surface receptor that leads to neural plasticity. (PMID:24937179)
- Myeloperoxidase and eosinophil peroxidase are readily internalized by HUVEC cells where they promote cellular proliferation, migration, invasion, and stimulate angiogenesis both in vitro and in vivo. (PMID:26386352)
- there is a strong association in a given patient between both nasal and pharyngeal EPX levels and the eosinophil percentage of induced sputum. (PMID:26645423)
- The main significance of this work is the discovery of EPO as a novel ligand for the HER2 receptor. Following HER2 activation, EPO induces activation of FAK and subsequent activation of beta1-integrin, via inside-out signaling. This complex results in downstream activation of ERK1/2 and a sustained up regulation of both MUC4 and the HER2 receptor (PMID:27519953)
- EPO-mediated protein carbamylation is promoted during allergen-induced asthma exacerbation, and can both modulate immune responses and trigger a cascade of many of the inflammatory signals present in asthma. (PMID:27587397)
- peroxidase enzymes, like MPO and EPO, may play a fundamental role in inhibiting RANKL-induced osteoclast differentiation at inflammatory sites of bone fracture and injury. (PMID:27836774)
- Both MPO and EPO are causatively involved in breast cancer progression and identified as potential therapeutic targets whereby specific novel inhibitors may reduce tumor growth and limit the occurrence of metastasis. (PMID:28260049)
- EPX is a useful biomarker for eosinophilic inflammation in chronic rhinosinusitis. (PMID:30738839)
- Eosinophil Peroxidase: A Biomarker for Eosinophilic Chronic Rhinosinusitis Agnostic of Polyp Status. (PMID:37255054)
- Eosinophils preserve bone homeostasis by inhibiting excessive osteoclast formation and activity via eosinophil peroxidase. (PMID:38316791)
- Eosinophil peroxidase promotes bronchial epithelial cells to secrete asthma-related factors and induces the early stage of airway remodeling. (PMID:38663494)
Cross-species orthologs
11 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mpx | ENSDARG00000019521 |
| mus_musculus | Epx | ENSMUSG00000052234 |
| rattus_norvegicus | Epx | ENSRNOG00000008707 |
| drosophila_melanogaster | Pxd | FBGN0004577 |
| drosophila_melanogaster | Pxn | FBGN0011828 |
| drosophila_melanogaster | CG4009 | FBGN0038469 |
| drosophila_melanogaster | cysu | FBGN0038511 |
| caenorhabditis_elegans | WBGENE00004256 | |
| caenorhabditis_elegans | WBGENE00004257 | |
| caenorhabditis_elegans | WBGENE00016700 | |
| caenorhabditis_elegans | WBGENE00019613 |
Paralogs (5): MPO (ENSG00000005381), TPO (ENSG00000115705), PXDN (ENSG00000130508), PXDNL (ENSG00000147485), LPO (ENSG00000167419)
Protein
Protein identifiers
Eosinophil peroxidase — P11678 (reviewed: P11678)
All UniProt accessions (1): P11678
UniProt curated annotations — full annotation on UniProt →
Function. Mediates tyrosine nitration of secondary granule proteins in mature resting eosinophils. Shows significant inhibitory activity towards Mycobacterium tuberculosis H37Rv by inducing bacterial fragmentation and lysis.
Subunit / interactions. Tetramer of two light chains and two heavy chains.
Subcellular location. Cytoplasmic granule.
Disease relevance. Eosinophil peroxidase deficiency (EPXD) [MIM:261500] A rare abnormality without clinical symptoms characterized by decreased or absent peroxidase activity and decreased volume of the granule matrix in eosinophils. The disease is caused by variants affecting the gene represented in this entry.
Cofactor. Binds 1 Ca(2+) ion per heterodimer. Binds 1 heme b (iron(II)-protoporphyrin IX) covalently through ester linkages to hydroxylated methyl groups formed auto-catalytically with hydrogen peroxide at the heme C-1 and C-5 positions. The ester linkage to Asp-232 was observed in 30% of the chains.
Similarity. Belongs to the peroxidase family. XPO subfamily.
RefSeq proteins (1): NP_000493* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR010255 | Haem_peroxidase_sf | Homologous_superfamily |
| IPR019791 | Haem_peroxidase_animal | Family |
| IPR037120 | Haem_peroxidase_sf_animal | Homologous_superfamily |
Pfam: PF03098
Catalyzed reactions (Rhea), 1 shown:
- 2 a phenolic donor + H2O2 = 2 a phenolic radical donor + 2 H2O (RHEA:56136)
UniProt features (48 total): sequence variant 16, binding site 8, glycosylation site 6, disulfide bond 6, sequence conflict 5, chain 2, signal peptide 1, propeptide 1, site 1, modified residue 1, active site 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8OGI | X-RAY DIFFRACTION | 1.55 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P11678-F1 | 92.40 | 0.82 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 377 (transition state stabilizer); 233 (proton acceptor)
Ligand- & substrate-binding residues (8): 312; 380 (covalent); 474 (axial binding residue); 232 (covalent; partial); 234; 306; 308; 310
Post-translational modifications (1): 488
Disulfide bonds (6): 141–152, 253–263, 257–281, 359–370, 578–635, 676–701
Glycosylation sites (6): 52, 113, 327, 363, 700, 708
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-6798695 | Neutrophil degranulation |
MSigDB gene sets: 371 (showing top):
GOBP_MYELOID_CELL_DIFFERENTIATION, GSE45365_NK_CELL_VS_CD8A_DC_DN, GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_HEMOGLOBIN_METABOLIC_PROCESS, GOBP_NEGATIVE_REGULATION_OF_TRANSMEMBRANE_TRANSPORT, GOBP_REGULATION_OF_LEUKOCYTE_PROLIFERATION, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_MYELOID_CELL_HOMEOSTASIS, GOBP_RESPONSE_TO_ELECTRICAL_STIMULUS, GOBP_MYELOID_LEUKOCYTE_MIGRATION, HARRIS_HYPOXIA, GOBP_CIRCULATORY_SYSTEM_PROCESS, GOBP_MYELOID_CELL_DEVELOPMENT, GOBP_INFLAMMATORY_RESPONSE, GOBP_RESPONSE_TO_PEPTIDE
GO Biological Process (10): defense response to nematode (GO:0002215), response to oxidative stress (GO:0006979), negative regulation of macrophage cytokine production (GO:0010936), negative regulation of interleukin-10 production (GO:0032693), negative regulation of interleukin-5 production (GO:0032714), positive regulation of interleukin-4 production (GO:0032753), defense response to bacterium (GO:0042742), hydrogen peroxide catabolic process (GO:0042744), eosinophil migration (GO:0072677), cellular oxidant detoxification (GO:0098869)
GO Molecular Function (5): peroxidase activity (GO:0004601), heme binding (GO:0020037), metal ion binding (GO:0046872), lactoperoxidase activity (GO:0140825), oxidoreductase activity (GO:0016491)
GO Cellular Component (4): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), secretory granule lumen (GO:0034774), extracellular exosome (GO:0070062)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Innate Immune System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| defense response | 2 |
| negative regulation of cytokine production | 2 |
| response to other organism | 1 |
| response to stress | 1 |
| negative regulation of cytokine production involved in immune response | 1 |
| macrophage cytokine production | 1 |
| regulation of macrophage cytokine production | 1 |
| interleukin-10 production | 1 |
| regulation of interleukin-10 production | 1 |
| interleukin-5 production | 1 |
| regulation of interleukin-5 production | 1 |
| positive regulation of cytokine production | 1 |
| interleukin-4 production | 1 |
| regulation of interleukin-4 production | 1 |
| response to bacterium | 1 |
| catabolic process | 1 |
| hydrogen peroxide metabolic process | 1 |
| granulocyte migration | 1 |
| cellular detoxification | 1 |
| antioxidant activity | 1 |
| oxidoreductase activity, acting on peroxide as acceptor | 1 |
| tetrapyrrole binding | 1 |
| cation binding | 1 |
| peroxidase activity | 1 |
| catalytic activity | 1 |
| cellular anatomical structure | 1 |
| secretory granule | 1 |
| cytoplasmic vesicle lumen | 1 |
| extracellular vesicle | 1 |
Protein interactions and networks
STRING
736 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| EPX | RNASE2 | P10153 | 999 |
| EPX | RNASE3 | P12724 | 999 |
| EPX | IL5 | P05113 | 719 |
| EPX | GADD45GIP1 | Q8TAE8 | 717 |
| EPX | PRG2 | P13727 | 715 |
| EPX | IL4 | P05112 | 690 |
| EPX | MRGPRX2 | Q96LB1 | 642 |
| EPX | CCL11 | P50877 | 641 |
| EPX | IL5RA | Q01344 | 621 |
| EPX | CCR3 | P51677 | 600 |
| EPX | IL13 | P35225 | 586 |
| EPX | SIGLEC8 | Q9NYZ4 | 579 |
| EPX | CCL26 | Q9Y258 | 579 |
| EPX | CLC | Q05315 | 571 |
| EPX | CCL24 | O00175 | 571 |
IntAct
11 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TMEM237 | CLGN | psi-mi:“MI:0914”(association) | 0.530 |
| NCK1 | EPX | psi-mi:“MI:0915”(physical association) | 0.400 |
| EPX | PIK3R1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| EPX | PLCG1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| EPX | TTC19 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TMEM237 | JCHAIN | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM74 | KLRG2 | psi-mi:“MI:0914”(association) | 0.350 |
| OR13C3 | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
| STX17 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| RAB11A | SERPINA3 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (16): EPX (Affinity Capture-MS), EPX (Affinity Capture-MS), EPX (Affinity Capture-MS), EPX (Affinity Capture-MS), TTC19 (Affinity Capture-MS), EPX (Affinity Capture-MS), EPX (Affinity Capture-MS), EPX (Affinity Capture-MS), EPX (Affinity Capture-MS), HNRNPA2B1 (Cross-Linking-MS (XL-MS)), DNAH2 (Cross-Linking-MS (XL-MS)), DNAH6 (Cross-Linking-MS (XL-MS)), HNRNPA1L2 (Cross-Linking-MS (XL-MS)), HNRNPA3 (Cross-Linking-MS (XL-MS)), EPX (Cross-Linking-MS (XL-MS))
ESM2 similar proteins: A0A1Y9G8H0, A0A452E9Y6, A1A4K5, A1KZ92, A5JUY8, P05164, P07202, P09933, P11247, P11678, P14650, P15396, P22079, P22413, P35419, P43446, P49290, P49340, P57110, P70669, P78562, P80025, Q01603, Q08410, Q13822, Q20616, Q23490, Q2KIY5, Q3TCN2, Q4QQW8, Q5R5M5, Q5SW46, Q64610, Q6DYE8, Q6P9A2, Q801F7, Q8CIY2, Q8HYB7, Q8HZK2, Q8HZK3
Diamond homologs: A0A1Y9G8H0, A0A452E9Y6, A1KZ92, A4IGL7, A5JUY8, B3A0P3, B3A0Q8, G5EG78, H2A0M7, O61213, P09933, P11247, P11678, P22079, P80025, P82600, P90820, Q01603, Q20616, Q23490, Q3UQ28, Q5SW46, Q6TMK4, Q7QH73, Q8CIY2, Q8HYB7, Q8R481, Q92626, Q9ES45, Q9VEG6, Q9VZZ4, A8WQH2, O02768, P05164, P07202, P14650, P35355, P35419, P49290, Q1ENI8
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| EPX | “up-regulates activity” | PRG2 | “post translational modification” |
| EPX | “up-regulates activity” | RNASE2 | “post translational modification” |
| EPX | “up-regulates activity” | RNASE3 | “post translational modification” |
| EPX | “up-regulates activity” | EPX | “post translational modification” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
162 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 137 |
| Likely benign | 9 |
| Benign | 8 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1610 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:58193129:G:GT | donor_gain | 1.0000 |
| 17:58193506:G:GT | donor_gain | 1.0000 |
| 17:58193612:G:GT | donor_gain | 1.0000 |
| 17:58193711:C:G | acceptor_gain | 1.0000 |
| 17:58193711:CAGAT:C | acceptor_loss | 1.0000 |
| 17:58193712:A:AG | acceptor_gain | 1.0000 |
| 17:58193712:AGAT:A | acceptor_gain | 1.0000 |
| 17:58193713:G:GG | acceptor_gain | 1.0000 |
| 17:58193713:GA:G | acceptor_gain | 1.0000 |
| 17:58193713:GAT:G | acceptor_gain | 1.0000 |
| 17:58193713:GATG:G | acceptor_gain | 1.0000 |
| 17:58193713:GATGT:G | acceptor_gain | 1.0000 |
| 17:58193828:ACAA:A | donor_gain | 1.0000 |
| 17:58193832:G:T | donor_loss | 1.0000 |
| 17:58193832:GTGC:G | donor_gain | 1.0000 |
| 17:58193833:T:G | donor_loss | 1.0000 |
| 17:58194065:G:GT | donor_gain | 1.0000 |
| 17:58194093:G:GG | donor_gain | 1.0000 |
| 17:58194962:A:G | acceptor_loss | 1.0000 |
| 17:58194963:GGTCC:G | acceptor_gain | 1.0000 |
| 17:58195167:CAAGG:C | donor_loss | 1.0000 |
| 17:58195168:AAG:A | donor_loss | 1.0000 |
| 17:58195171:G:GC | donor_loss | 1.0000 |
| 17:58195172:T:A | donor_loss | 1.0000 |
| 17:58196934:CTCA:C | acceptor_loss | 1.0000 |
| 17:58196935:TCA:T | acceptor_loss | 1.0000 |
| 17:58196936:CA:C | acceptor_loss | 1.0000 |
| 17:58196937:A:AC | acceptor_loss | 1.0000 |
| 17:58196937:A:AG | acceptor_gain | 1.0000 |
| 17:58196938:G:GG | acceptor_gain | 1.0000 |
AlphaMissense
4628 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:58194977:C:T | S203F | 0.995 |
| 17:58199109:G:C | R397P | 0.995 |
| 17:58195067:A:C | H233P | 0.994 |
| 17:58199097:G:C | R393P | 0.994 |
| 17:58200364:C:A | N559K | 0.994 |
| 17:58200364:C:G | N559K | 0.994 |
| 17:58200378:G:C | R564P | 0.994 |
| 17:58203092:T:A | W574R | 0.993 |
| 17:58203092:T:C | W574R | 0.993 |
| 17:58195048:T:A | W227R | 0.992 |
| 17:58195048:T:C | W227R | 0.992 |
| 17:58195066:C:G | H233D | 0.992 |
| 17:58200374:A:C | S563R | 0.992 |
| 17:58200376:C:A | S563R | 0.992 |
| 17:58200376:C:G | S563R | 0.992 |
| 17:58199175:G:C | R419P | 0.991 |
| 17:58199653:T:C | F466L | 0.991 |
| 17:58199655:C:A | F466L | 0.991 |
| 17:58199655:C:G | F466L | 0.991 |
| 17:58200372:G:C | R562P | 0.991 |
| 17:58203096:G:C | R575T | 0.990 |
| 17:58203215:T:A | W615R | 0.990 |
| 17:58203215:T:C | W615R | 0.990 |
| 17:58195073:T:C | L235P | 0.989 |
| 17:58200348:A:T | D554V | 0.989 |
| 17:58203105:G:A | C578Y | 0.989 |
| 17:58204301:T:A | C676S | 0.989 |
| 17:58204302:G:C | C676S | 0.989 |
| 17:58194977:C:A | S203Y | 0.988 |
| 17:58195069:G:C | D234H | 0.988 |
dbSNP variants (sampled 300 via entrez): RS1000228687 (17:58196837 G>A,T), RS1000836731 (17:58192330 C>A), RS1000850455 (17:58197809 A>G), RS1000932455 (17:58192514 G>T), RS1001276555 (17:58193992 A>G), RS1001502124 (17:58195739 C>T), RS1001503320 (17:58195618 T>G), RS1001680235 (17:58201465 C>T), RS1002064254 (17:58198717 T>C), RS1002343533 (17:58191591 T>C), RS1002525434 (17:58204528 A>C), RS1002560996 (17:58198432 G>A), RS1002722081 (17:58201363 C>A,T), RS1002948590 (17:58195306 C>A,T), RS1003137914 (17:58194191 C>G,T)
Disease associations
OMIM: gene MIM:131399 | disease phenotypes: MIM:261500
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| eosinophil peroxidase deficiency | Limited | Autosomal recessive |
Mondo (1): eosinophil peroxidase deficiency (MONDO:0043364)
Orphanet (0):
HPO phenotypes
2 total (2 of 2 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0034253 | Eosinophil nuclear hypersegmentation |
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C564893 | Presentey Anomaly (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2438 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
4 measured of 4 human assays (4 total across all organisms); most potent 4 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| 7-{18-oxa-3,4,10-triazatetracyclo[17.3.1.13,6.113,1 7 ]pentacosa-1(23),4,6(25),13,15,17(24),19,21-octaen-7-yl}-3H-[1,2,3]triazolo[4,5-b]pyridin-5-amine | IC50 | 37 nM | US-10577383: Macrocyclic inhibitors of myeloperoxidase |
| 7-{14′-Oxa-3′,4′,10′-triazaspiro[cyclopropane-1,12′-tricyclo[13.3.1.13,6]icosane]-1′(19′),4′,6′(20′),15′,17′-pentaen-7′-yl}-3H-[1,2,3]triazolo[4,5-b]pyridin-5-amine | IC50 | 63 nM | US-10577383: Macrocyclic inhibitors of myeloperoxidase |
| 7-{18-oxa-3,4,10-triazatetracyclo[17.3.1.13,6.112,1 6 ]pentacosa-1(23),4,6(25),12,14,16(24),19,21-octaen-7-yl}-3H-[1,2,3]triazolo[4,5-b]pyridin-5-amine | IC50 | 190 nM | US-10577383: Macrocyclic inhibitors of myeloperoxidase |
| 7-{3-Oxa-10,11,17-triazatetracyclo[16.2.2.14,8.110,13]tetracosa-4,6,8(24),11,13 | IC50 | 220 nM | US-10577383: Macrocyclic inhibitors of myeloperoxidase |
ChEMBL bioactivities
7 potent at pChembl≥5 of 7 total, top 7 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.82 | IC50 | 15 | nM | CHEMBL333928 |
| 7.77 | IC50 | 17 | nM | CHEMBL333928 |
| 7.66 | IC50 | 22 | nM | CHEMBL4482878 |
| 7.50 | IC50 | 32 | nM | CHEMBL4753981 |
| 7.04 | IC50 | 92 | nM | CHEMBL4747269 |
| 6.80 | IC50 | 160 | nM | CHEMBL4282403 |
| 6.44 | IC50 | 360 | nM | CHEMBL4790231 |
PubChem BioAssay actives
7 with measured affinity, of 8 total; 6 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 7-phenylmethoxy-2H-triazolo[4,5-d]pyrimidin-5-amine | 1416586: Inhibition of eosinophil peroxidase (unknown origin)assessed as reduction in H2O2-catalyzed 3-bromo tyrosine formation using tyrosine and potassium bromide preincubated for 10 mins followed by tyrosine/potassium bromide/H2O2 addition and measured after 15 mins by RP-UPLC analysis | ic50 | 0.0150 | uM |
| 7-[(2-fluorophenyl)methylsulfanyl]-2H-triazolo[4,5-b]pyridin-5-amine | 1533024: Inhibition of human EPX bromination activity assessed as reduction in H2O2 catalyzed 3-bromo tyrosine formation from tyrosine and potassium bromide preincubated for 10 mins followed by tyrosine/potassium bromide/H2O2 addition measured after 15 mins by RP-UPLC analysis | ic50 | 0.0220 | uM |
| 7-benzyl-2H-triazolo[4,5-b]pyridin-5-amine | 1698298: Inhibition of human EPX bromination activity using tyrosine as substrate by measuring 3-bromo tyrosine formation incubated for 10 mins | ic50 | 0.0320 | uM |
| 7-[(1R)-1-phenyl-3-[[(1S,3S)-3-phenyl-2,3-dihydro-1H-inden-1-yl]amino]propyl]-2H-triazolo[4,5-b]pyridin-5-amine | 1698298: Inhibition of human EPX bromination activity using tyrosine as substrate by measuring 3-bromo tyrosine formation incubated for 10 mins | ic50 | 0.0920 | uM |
| 5-(2,4,5-trichlorophenoxy)pyridin-2-amine | 1416586: Inhibition of eosinophil peroxidase (unknown origin)assessed as reduction in H2O2-catalyzed 3-bromo tyrosine formation using tyrosine and potassium bromide preincubated for 10 mins followed by tyrosine/potassium bromide/H2O2 addition and measured after 15 mins by RP-UPLC analysis | ic50 | 0.1600 | uM |
| 7-[(1R)-1-phenyl-3-[(4-phenyl-1-bicyclo[2.2.2]octanyl)amino]propyl]-2H-triazolo[4,5-b]pyridin-5-amine | 1698298: Inhibition of human EPX bromination activity using tyrosine as substrate by measuring 3-bromo tyrosine formation incubated for 10 mins | ic50 | 0.3600 | uM |
CTD chemical–gene interactions
26 total (human), top 26 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Arsenic Trioxide | increases expression | 2 |
| Tretinoin | decreases expression, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| lasiocarpine | decreases expression | 1 |
| chlortoluron | decreases expression | 1 |
| terbufos | increases methylation | 1 |
| cerous chloride | decreases expression | 1 |
| lanthanum chloride | increases expression | 1 |
| testosterone-3-carboxymethyloxime-bovine serum albumin conjugate | decreases expression | 1 |
| tamibarotene | decreases expression | 1 |
| azoxystrobin | decreases expression | 1 |
| cyproconazole | decreases expression | 1 |
| Grape Seed Proanthocyanidins | affects cotreatment, decreases expression | 1 |
| isonicotinyl-NAD | increases chemical synthesis, increases oxidation | 1 |
| Acetaminophen | increases expression | 1 |
| Arbutin | increases expression | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Catechin | affects cotreatment, decreases expression | 1 |
| Cisplatin | decreases expression | 1 |
| Fonofos | increases methylation | 1 |
| Isoniazid | increases oxidation, increases chemical synthesis | 1 |
| Parathion | increases methylation | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Butyric Acid | increases expression | 1 |
| Permethrin | decreases expression | 1 |
ChEMBL screening assays
4 unique, capped per target: 3 binding, 1 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4263010 | Binding | Inhibition of eosinophil peroxidase (unknown origin)assessed as reduction in H2O2-catalyzed 3-bromo tyrosine formation using tyrosine and potassium bromide preincubated for 10 mins followed by tyrosine/potassium bromide/H2O2 addition and me | Triazolopyrimidines identified as reversible myeloperoxidase inhibitors. — Medchemcomm |
| CHEMBL677515 | Functional | Compound was evaluated for the inhibition of serum-opsonized zymosan stimulated eosinophil peroxidase release from human eosinophil; Inactive | Novel benzothiophene-, benzofuran-, and naphthalenecarboxamidotetrazoles as potential antiallergy agents. — J Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: eosinophil peroxidase deficiency
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): eosinophil peroxidase deficiency